AlfalfaGEDB | MsG0880045457.01

M. sativa cultivar ZhongmuNo.1 / MsG0880045457.01

KEGG: -
GO: GO:0015846 GO:0019808 GO:0042597
PFAM: PF13343

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045457.01.T01	XP_003628983.2	91.783	572	17	2	1	572	1	542	0	1059

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045457.01.T01	P31133	26.027	219	138	7	245	450	80	287	4.30E-13	74.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045457.01.T01	G7L742	91.783	572	17	2	1	572	1	542	0.0	1059

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047831.01	MsG0880045457.01	-0.820936	5.269444e-53	4.227766e-50
MsG0080047910.01	MsG0880045457.01	0.815316	9.840801e-52	6.762029e-49
MsG0080047967.01	MsG0880045457.01	0.833723	4.527823e-56	5.258729e-53
MsG0080048059.01	MsG0880045457.01	0.892570	1.405911e-74	1.292639e-70
MsG0080048232.01	MsG0880045457.01	0.801696	7.971483e-49	3.831604e-46
MsG0080048281.01	MsG0880045457.01	0.801901	7.234242e-49	3.495640e-46
MsG0080048528.01	MsG0880045457.01	0.815429	9.288205e-52	6.402202e-49
MsG0080048776.01	MsG0880045457.01	0.877275	7.162366e-69	3.580433e-65
MsG0080048813.01	MsG0880045457.01	0.825332	4.965674e-54	4.512705e-51
MsG0080048887.01	MsG0880045457.01	0.812236	4.691652e-51	2.967018e-48

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045457.01.T01	MTR_8g071820	91.783	572	17	2	1	572	1	542	0.0	1059

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045457.01.T01	AT1G31410	61.743	413	154	2	160	568	94	506	0.0	537

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Find 201 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGTGTGTGTGGTCAC+AGG	0.606559	8:-59352241	MsG0880045457.01.T01:CDS
AAAATTGTTACCCGGAGAAC+AGG	0.418311	8:-59353474	None:intergenic
AAACTTATCTGAGAAATGGA+AGG	0.613426	8:-59351551	MsG0880045457.01.T01:intron
AAAGTCTGGAGCGAGTTTAT+GGG	0.428771	8:-59350144	MsG0880045457.01.T01:CDS
AAATTGTAGGGGTTAGAGTT+AGG	0.325705	8:+59353318	None:intergenic
AAGATGTGGAAGGTCAAGAA+TGG	0.565634	8:-59351579	MsG0880045457.01.T01:CDS
AATCACCAATTTGTGATTTG+TGG	0.385438	8:-59352218	MsG0880045457.01.T01:CDS
AATTACAATTCTCCAATCAC+CGG	0.574945	8:-59353266	MsG0880045457.01.T01:CDS
AATTGAGCCAATAAAAGATG+TGG	0.585559	8:-59351593	MsG0880045457.01.T01:CDS
AATTGTAATTGAGATTTGAG+AGG	0.576588	8:+59353279	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTTATCTGAGAAATGGA+AGG	-	Chr8:59350971-59350990	MsG0880045457.01.T01:intron	30.0%
AACAAAGTGCACAAAACAAA+TGG	+	Chr8:59351072-59351091	None:intergenic	30.0%
AATCACCAATTTGTGATTTG+TGG	-	Chr8:59350304-59350323	MsG0880045457.01.T01:intron	30.0%
AATTACAATTCTCCAATCAC+CGG	-	Chr8:59349256-59349275	MsG0880045457.01.T01:three_prime_UTR	30.0%
AATTGAGCCAATAAAAGATG+TGG	-	Chr8:59350929-59350948	MsG0880045457.01.T01:intron	30.0%
ACAAATGTGAAGAACATAGT+AGG	+	Chr8:59349976-59349995	None:intergenic	30.0%
ATATATTCATGTCTCCTCTA+GGG	-	Chr8:59353359-59353378	MsG0880045457.01.T01:CDS	30.0%
ATATCTGATTTATGCTTCAC+CGG	+	Chr8:59351865-59351884	None:intergenic	30.0%
ATCAACAATTTCCTGTTACA+AGG	+	Chr8:59352512-59352531	None:intergenic	30.0%
ATCAATTTGGAAGTTAATGG+TGG	-	Chr8:59352033-59352052	MsG0880045457.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	59349061	59353483	59349061	ID=MsG0880045457.01;Name=MsG0880045457.01
Chr8	mRNA	59349061	59353483	59349061	ID=MsG0880045457.01.T01;Parent=MsG0880045457.01;Name=MsG0880045457.01.T01;_AED=0.28;_eAED=0.31;_QI=65\|0.83\|0.85\|1\|0.83\|0.71\|7\|430\|572
Chr8	exon	59349061	59349880	59349061	ID=MsG0880045457.01.T01:exon:22868;Parent=MsG0880045457.01.T01
Chr8	exon	59350133	59350294	59350133	ID=MsG0880045457.01.T01:exon:22867;Parent=MsG0880045457.01.T01
Chr8	exon	59350446	59350628	59350446	ID=MsG0880045457.01.T01:exon:22866;Parent=MsG0880045457.01.T01
Chr8	exon	59350715	59350849	59350715	ID=MsG0880045457.01.T01:exon:22865;Parent=MsG0880045457.01.T01
Chr8	exon	59351552	59351800	59351552	ID=MsG0880045457.01.T01:exon:22864;Parent=MsG0880045457.01.T01
Chr8	exon	59352035	59352279	59352035	ID=MsG0880045457.01.T01:exon:22863;Parent=MsG0880045457.01.T01
Chr8	exon	59353064	59353483	59353064	ID=MsG0880045457.01.T01:exon:22862;Parent=MsG0880045457.01.T01
Chr8	five_prime_UTR	59353419	59353483	59353419	ID=MsG0880045457.01.T01:five_prime_utr;Parent=MsG0880045457.01.T01
Chr8	CDS	59353064	59353418	59353064	ID=MsG0880045457.01.T01:cds;Parent=MsG0880045457.01.T01
Chr8	CDS	59352035	59352279	59352035	ID=MsG0880045457.01.T01:cds;Parent=MsG0880045457.01.T01
Chr8	CDS	59351552	59351800	59351552	ID=MsG0880045457.01.T01:cds;Parent=MsG0880045457.01.T01
Chr8	CDS	59350715	59350849	59350715	ID=MsG0880045457.01.T01:cds;Parent=MsG0880045457.01.T01
Chr8	CDS	59350446	59350628	59350446	ID=MsG0880045457.01.T01:cds;Parent=MsG0880045457.01.T01
Chr8	CDS	59350133	59350294	59350133	ID=MsG0880045457.01.T01:cds;Parent=MsG0880045457.01.T01
Chr8	CDS	59349491	59349880	59349491	ID=MsG0880045457.01.T01:cds;Parent=MsG0880045457.01.T01
Chr8	three_prime_UTR	59349061	59349490	59349061	ID=MsG0880045457.01.T01:three_prime_utr;Parent=MsG0880045457.01.T01

Gene Sequence

>MsG0880045457.01.T01

ATGGCTGTGTTGCTGCAAACACATAACACACTCTCTCTACCTTCACCACGTTACCCTTATCTCTTCTCAATTCGAAACCCTAACTCTAACCCCTACAATTTTCTAATCCCCACCTCACCTCTCAAATCTCAATTACAATTCTCCAATCACCGGAATCCAACACACCGTTCGCCGGCGTCACCAGTCTCCGCTTCCCGCCGGGAACCTTCAGATACGACGCCACTCAACTTGCTGCCCCGTGCTCTTGTCCGCGTCACTGTCTCTGTCGCGCTGTTTCTCTGCTGTGGCATTCGCGCTTGTTCCGCTTCTTTGCCTCCTCTAACCAACGTGGTTCAGCAGGAACAAACTATTCAAGGATTTGCTGCTGTCATAAAATGGTGTGTGTGGTCACAGGAATCACCAATTTGTGATTTGTGGTTTTATATTTTATGTATGATTGCAGATGATAATGATGCAAGGAAACATGATGCCAATGGAAATATAGATGTAGATAAGGAATTAGAAGCATCTTTTAATGCTTGGAAGTCTAAAACGTATGCATTGACAGTTCCTTTGAAAGTTGTTGCTTTGCGTGGCTCTATTCCTCCTTCATGGATCAAGGATTTCATAAATTCTCAAGGGAATAGAATGAAATTTAAGGTGAATTATTATGCAACTCTCGAGAATATCTTCTCTGATCTATCCATTCCCTTTACCAAAGGTGATCATGTCCCAACAACTGCTTTGGCAGCTGATATTGTCGGTATTGGTGACTCGTGGCTCAAATTTGCCGTTAAAAAAGCTATAATTGAGCCAATAAAAGATGTGGAAGGTCAAGAATGGTTTAAAAACTTATCTGAGAAATGGAAGGTATATCTACGCAGGAACTGTGAGGGAGAAGTGGACCCTGAAGGTGATATATGGGCTGCCCCATATCGATGGGGATGCATGGTAATAGCATACAAGACAAATAGTTTTCAAAAGCATAAGTTGGCTCCAATAGAGGACTGGGCAGATCTGTGGCGGCCTGATCTTGCAGGGAGGATTTCCATGGTGGACTCTCCTAGAGAAGTTGTCGGTGCAGTCTTAAAGTATATGGGGGCTTCCTATAATGCAAATGACATCAATTTGGAAGTTAATGGTGGGAGAGATGCTGTTAAACATAATTTAGCATTGCTTGCAAAACAGGTTCGACTATTTGATAGTGAAAACTATCTAAAGGCTTTTGGAGTTGGAGATGTGTGGGTAGCTGTTGGATGGAGTAGTGATATTATTCCTGTTGCTAAACGGATGTCTAATGTTGCAGTTATTGTTCCAAAGTCTGGAGCGAGTTTATGGGCAGATCTTTGGGCAATTCCTGCTGCCTCAAGGATTCAAACAAGTCGGATTGGTGGGCGCGTCAGGGGTCCATCCCCATTAATTCATCAGTGGATAGAGTTTTGTCTGCAATCTGCCAGAGCACTGCCCTTTAAGCAGGAGGTGATCCCAGGTGCCTCTCCCCCTCTTCTTCAAGGTCATTCCACCAATGTGCCTTTGGAGTTAACTAAGGGTAGGCCAAGGCTAGACACCAATCTCATTGATGGAGCACCACCATCTGACATTTTAGAAAGGTGTGAATTTCTAGAGCCATTATCTAATTCCGCAGAATCCGATTACCACTGGTTGCTTGCCTCAATCCAGGAACCTGGTAATGGATTGATACACAAAATGCGTCAGTATATCTCATCATTGGTTACATAG

Protein sequence

>MsG0880045457.01.T01

MAVLLQTHNTLSLPSPRYPYLFSIRNPNSNPYNFLIPTSPLKSQLQFSNHRNPTHRSPASPVSASRREPSDTTPLNLLPRALVRVTVSVALFLCCGIRACSASLPPLTNVVQQEQTIQGFAAVIKWCVWSQESPICDLWFYILCMIADDNDARKHDANGNIDVDKELEASFNAWKSKTYALTVPLKVVALRGSIPPSWIKDFINSQGNRMKFKVNYYATLENIFSDLSIPFTKGDHVPTTALAADIVGIGDSWLKFAVKKAIIEPIKDVEGQEWFKNLSEKWKVYLRRNCEGEVDPEGDIWAAPYRWGCMVIAYKTNSFQKHKLAPIEDWADLWRPDLAGRISMVDSPREVVGAVLKYMGASYNANDINLEVNGGRDAVKHNLALLAKQVRLFDSENYLKAFGVGDVWVAVGWSSDIIPVAKRMSNVAVIVPKSGASLWADLWAIPAASRIQTSRIGGRVRGPSPLIHQWIEFCLQSARALPFKQEVIPGASPPLLQGHSTNVPLELTKGRPRLDTNLIDGAPPSDILERCEFLEPLSNSAESDYHWLLASIQEPGNGLIHKMRQYISSLVT*