AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016801.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016801.01.T01 MTR_3g095730 94.472 398 11 4 1 391 26 419 0.0 745
MsG0380016801.01.T01 MTR_8g092870 65.915 399 125 4 1 391 23 418 0.0 515
MsG0380016801.01.T01 MTR_5g015210 28.150 373 250 5 1 373 80 434 6.13e-29 117
MsG0380016801.01.T01 MTR_7g106340 29.167 384 251 10 1 369 21 398 7.36e-29 117
MsG0380016801.01.T01 MTR_6g071340 25.553 407 261 14 1 380 18 409 8.55e-29 116
MsG0380016801.01.T01 MTR_5g077510 25.598 418 261 17 1 391 48 442 6.15e-28 114
MsG0380016801.01.T01 MTR_5g048050 25.307 407 262 14 1 380 38 429 3.04e-26 109
MsG0380016801.01.T01 MTR_2g087350 26.133 375 261 8 1 369 19 383 8.55e-24 102
MsG0380016801.01.T01 MTR_1g056880 27.059 425 259 15 1 391 20 427 6.37e-23 100
MsG0380016801.01.T01 MTR_1g017770 25.926 378 257 8 1 373 58 417 2.13e-22 98.6
MsG0380016801.01.T01 MTR_1g056870 27.059 425 259 15 1 391 20 427 2.28e-22 98.6
MsG0380016801.01.T01 MTR_4g063800 28.198 383 234 14 1 368 268 624 3.99e-21 95.9
MsG0380016801.01.T01 MTR_4g485520 26.301 346 209 13 1 326 118 437 2.05e-20 93.2
MsG0380016801.01.T01 MTR_4g485520 26.301 346 209 13 1 326 286 605 2.99e-20 93.2
MsG0380016801.01.T01 MTR_3g065080 21.921 406 276 12 1 384 49 435 1.74e-19 90.1
MsG0380016801.01.T01 MTR_2g018010 25.000 400 241 13 1 371 305 674 1.58e-18 88.2
MsG0380016801.01.T01 MTR_1g056840 25.647 425 239 16 1 391 20 401 1.04e-17 84.7
MsG0380016801.01.T01 MTR_7g059405 24.297 391 244 12 1 372 277 634 3.66e-17 83.6
MsG0380016801.01.T01 MTR_1g094215 26.796 362 216 13 1 338 77 413 2.20e-16 80.9
MsG0380016801.01.T01 MTR_4g051515 24.500 400 271 14 1 381 19 406 3.74e-16 80.1
MsG0380016801.01.T01 MTR_1g094215 26.796 362 216 13 1 338 260 596 5.25e-16 80.1
MsG0380016801.01.T01 MTR_4g085720 25.065 383 256 12 1 371 27 390 3.01e-15 77.0
MsG0380016801.01.T01 MTR_7g078330 25.373 335 219 13 1 326 287 599 4.86e-15 77.4
MsG0380016801.01.T01 MTR_1g056910 23.969 388 266 12 1 375 19 390 2.23e-14 74.7
MsG0380016801.01.T01 MTR_3g096370 27.715 267 170 8 1 254 23 279 2.78e-14 74.3
MsG0380016801.01.T01 MTR_4g107010 26.286 350 212 14 1 326 293 620 4.84e-14 74.3
MsG0380016801.01.T01 MTR_1g093965 33.099 142 72 3 1 142 1 119 1.70e-13 69.3
MsG0380016801.01.T01 MTR_4g028960 50.000 54 27 0 1 54 293 346 1.00e-12 70.1
MsG0380016801.01.T01 MTR_1g093995 32.394 142 73 3 1 142 1 119 1.12e-12 67.0
MsG0380016801.01.T01 MTR_7g117890 23.473 311 196 10 1 304 268 543 8.02e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016801.01.T01 AT5G64660 49.512 410 176 7 1 391 23 420 1.76e-124 366
MsG0380016801.01.T01 AT5G09800 50.376 399 177 7 1 391 24 409 1.97e-119 353
MsG0380016801.01.T01 AT3G18710 47.912 407 180 14 1 391 25 415 2.53e-111 332
MsG0380016801.01.T01 AT2G35930 25.806 372 267 6 1 369 25 390 2.35e-27 112
MsG0380016801.01.T01 AT1G66160 23.560 382 257 10 1 370 46 404 1.58e-25 107
MsG0380016801.01.T01 AT3G52450 25.686 401 260 10 1 369 20 414 6.74e-25 105
MsG0380016801.01.T01 AT3G19380 26.415 371 243 11 1 356 27 382 6.79e-24 102
MsG0380016801.01.T01 AT3G49810 26.005 373 250 8 1 369 77 427 4.77e-23 100
MsG0380016801.01.T01 AT3G46510 27.273 341 210 12 1 326 269 586 4.94e-20 92.4
MsG0380016801.01.T01 AT1G49780 25.369 406 277 9 1 391 27 421 2.19e-18 86.7
MsG0380016801.01.T01 AT5G37490 24.490 392 260 14 1 375 44 416 3.25e-18 86.3
MsG0380016801.01.T01 AT1G23030 25.191 393 243 17 1 377 254 611 3.68e-18 86.7
MsG0380016801.01.T01 AT2G28830 25.063 399 246 14 1 375 197 566 3.86e-18 86.7
MsG0380016801.01.T01 AT3G54850 26.801 347 205 13 1 326 261 579 7.88e-18 85.9
MsG0380016801.01.T01 AT1G66160 22.099 362 247 10 21 370 50 388 4.45e-17 82.8
MsG0380016801.01.T01 AT1G71020 27.972 286 166 11 1 266 108 373 3.59e-16 80.5
MsG0380016801.01.T01 AT1G71020 27.972 286 166 11 1 266 256 521 4.83e-16 80.5
MsG0380016801.01.T01 AT5G42340 27.481 262 166 10 1 255 303 547 1.48e-14 75.9
MsG0380016801.01.T01 AT4G21350 24.202 376 247 10 1 367 18 364 2.16e-14 74.3
MsG0380016801.01.T01 AT1G29340 23.301 412 250 14 1 380 318 695 1.22e-12 70.1
MsG0380016801.01.T01 AT5G65920 53.704 54 25 0 1 54 73 126 2.18e-12 68.6
MsG0380016801.01.T01 AT5G65920 26.904 197 139 2 173 369 232 423 1.33e-11 66.2
MsG0380016801.01.T01 AT5G65920 53.704 54 25 0 1 54 73 126 2.18e-12 68.6
MsG0380016801.01.T01 AT5G65920 26.904 197 139 2 173 369 232 423 1.33e-11 66.2
MsG0380016801.01.T01 AT3G11840 22.222 414 266 10 1 368 23 426 3.85e-12 67.8
MsG0380016801.01.T01 AT5G01830 51.852 54 26 0 1 54 287 340 7.12e-12 67.4

Find 82 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGCATAATATGTGAAGTTT+TGG 0.276591 3:-88067663 None:intergenic
AAACAGAAACTGGTGAAAAT+TGG 0.295758 3:+88067248 MsG0380016801.01.T01:CDS
GTCTAACCAGCGTTGGATAC+TGG 0.313560 3:-88066562 None:intergenic
AACGGTGTTAGGTTTGGTTC+TGG 0.333260 3:+88066932 MsG0380016801.01.T01:CDS
GAACAGACTTTAACGGTGTT+AGG 0.356980 3:+88066921 MsG0380016801.01.T01:CDS
ACACCGGTGCAAAGACTAAC+AGG 0.363281 3:-88066525 None:intergenic
ATTTCTTGAACAGACTTTAA+CGG 0.373579 3:+88066914 MsG0380016801.01.T01:CDS
ACGGTTAGGTACAAAATCTT+TGG 0.375445 3:-88066628 None:intergenic
AGTTTCTGTTTGTTCCGTTT+CGG 0.376803 3:-88067236 None:intergenic
TAAACCGAACCGGTTTAAAC+CGG 0.401538 3:-88066772 None:intergenic
GACTTTAACGGTGTTAGGTT+TGG 0.408394 3:+88066926 MsG0380016801.01.T01:CDS
GAACCGAATCGGTCCAGATC+TGG 0.410843 3:-88066668 None:intergenic
TCAAGAAAACTAACCATTAA+CGG 0.410858 3:-88066870 None:intergenic
GAAACGGAACAAACAGAAAC+TGG 0.418763 3:+88067238 MsG0380016801.01.T01:CDS
CTAATTTCGCGAGAAAAGTT+CGG 0.427400 3:-88066836 None:intergenic
GAAGCAGTTACGATGGCTAA+TGG 0.436021 3:+88067521 MsG0380016801.01.T01:CDS
GTGTGAAGACGCGGGGTTTG+TGG 0.454044 3:+88067394 MsG0380016801.01.T01:CDS
TAGCCTCATCCGGTTTAAAC+CGG 0.457213 3:+88066763 MsG0380016801.01.T01:CDS
GGGAAGTATTTGCATGGTGG+CGG 0.461122 3:-88066604 None:intergenic
CGAAGATAGATTCAGCAATT+CGG 0.463703 3:-88067153 None:intergenic
CTTTCGTGATTAAACCGAAC+CGG 0.470487 3:-88066782 None:intergenic
CATCCAGATCTGGACCGATT+CGG 0.478094 3:+88066665 MsG0380016801.01.T01:CDS
GGTTCATCACCGGGTCGAAC+CGG 0.478104 3:+88066686 MsG0380016801.01.T01:CDS
TACATAGTCTCATCCAGATC+TGG 0.479419 3:+88066655 MsG0380016801.01.T01:CDS
CTAAGTCGGTGATGGTTTGA+AGG 0.487003 3:-88066743 None:intergenic
GGAAGTATTTGCATGGTGGC+GGG 0.489867 3:-88066603 None:intergenic
GGACCGATTCGGTTCATCAC+CGG 0.498704 3:+88066676 MsG0380016801.01.T01:CDS
GAAGGTAACCGTGGTGGAGA+AGG 0.500974 3:+88067319 MsG0380016801.01.T01:CDS
GACCGATTCGGTTCATCACC+GGG 0.508430 3:+88066677 MsG0380016801.01.T01:CDS
TTGAAGAACCTTGTGTTGAA+AGG 0.511575 3:+88066978 MsG0380016801.01.T01:CDS
TCATCCGGTTTAAACCGGTT+CGG 0.515676 3:+88066768 MsG0380016801.01.T01:CDS
CGGCGATACTGAATAAGATT+CGG 0.518377 3:+88067417 MsG0380016801.01.T01:CDS
GGTGGAGAAGGCGTTGAAGC+TGG 0.521064 3:+88067331 MsG0380016801.01.T01:CDS
ATCAGCTTCGAATCATTCTC+CGG 0.528248 3:-88067176 None:intergenic
GTTAGGTACAAAATCTTTGG+TGG 0.531775 3:-88066625 None:intergenic
CCAATCTCCATAAATCAAAA+CGG 0.532788 3:-88067683 None:intergenic
TGTTCTTTCCTTTCAACACA+AGG 0.541607 3:-88066986 None:intergenic
AGACTATGTAGAGTACGGTT+AGG 0.544129 3:-88066642 None:intergenic
ATCACCGACTTAGCCTCATC+CGG 0.544356 3:+88066753 MsG0380016801.01.T01:CDS
TCCCCTGTTAGTCTTTGCAC+CGG 0.548826 3:+88066522 MsG0380016801.01.T01:CDS
TAGCAATCTCAAAACCGAAA+CGG 0.555669 3:+88067222 MsG0380016801.01.T01:CDS
ACAGCGTCTTCAACGAGTGA+AGG 0.557046 3:+88067359 MsG0380016801.01.T01:CDS
GAGAAAAGTTCGGTTCTGAT+CGG 0.560096 3:-88066826 None:intergenic
GTACACATTTGTCGAACTTG+TGG 0.562241 3:-88067584 None:intergenic
GACCCGGTGATGAACCGAAT+CGG 0.567434 3:-88066679 None:intergenic
AAGAGAGATGTGTGAAGACG+CGG 0.568054 3:+88067385 MsG0380016801.01.T01:CDS
AGAGAGATGTGTGAAGACGC+GGG 0.574075 3:+88067386 MsG0380016801.01.T01:CDS
TTGGATACTGGAACGGTCGT+AGG 0.577907 3:-88066550 None:intergenic
AGCGATGAATTTCAAAACCC+TGG 0.578181 3:-88067081 None:intergenic
CAGCGTCTTCAACGAGTGAA+GGG 0.578889 3:+88067360 MsG0380016801.01.T01:CDS
GGATGAGACTATGTAGAGTA+CGG 0.580632 3:-88066647 None:intergenic
ATTGCTGAATCTATCTTCGC+CGG 0.591644 3:+88067157 MsG0380016801.01.T01:CDS
TACCGTCGTCTAACCAGCGT+TGG 0.592830 3:-88066569 None:intergenic
TGTTCATTAGAAAGAACTGT+AGG 0.593385 3:-88066717 None:intergenic
GAACCGGTTTAAACCGGATG+AGG 0.595940 3:-88066766 None:intergenic
GTGAAACGACCGGTTCGACC+CGG 0.613348 3:-88066695 None:intergenic
GGATGAGGCTAAGTCGGTGA+TGG 0.616650 3:-88066751 None:intergenic
TTAGGTACAAAATCTTTGGT+GGG 0.617972 3:-88066624 None:intergenic
TAAACCGGATGAGGCTAAGT+CGG 0.629808 3:-88066757 None:intergenic
ACAAGTTCGACAAATGTGTA+CGG 0.630403 3:+88067586 MsG0380016801.01.T01:CDS
TTCAAGAATCACAACCACCA+GGG 0.633736 3:+88067064 MsG0380016801.01.T01:CDS
TGAAGACGCGGGGTTTGTGG+CGG 0.634262 3:+88067397 MsG0380016801.01.T01:CDS
GGAACGGTCGTAGGTGACAC+CGG 0.634285 3:-88066541 None:intergenic
TTTGGTGGGAAGTATTTGCA+TGG 0.634607 3:-88066610 None:intergenic
AGAGTCTAATACGAGCGTGA+AGG 0.640411 3:+88067301 MsG0380016801.01.T01:CDS
GAATGTATCGAACGTTGCGA+CGG 0.642403 3:+88067439 MsG0380016801.01.T01:CDS
ATTCAAGAATCACAACCACC+AGG 0.646164 3:+88067063 MsG0380016801.01.T01:CDS
AGCACGCAGTAACGACGCTG+TGG 0.651564 3:+88067462 MsG0380016801.01.T01:CDS
GAGAGATGTGTGAAGACGCG+GGG 0.656707 3:+88067387 MsG0380016801.01.T01:CDS
GGTGGGAAGTATTTGCATGG+TGG 0.659091 3:-88066607 None:intergenic
GGAGAAGGCGTTGAAGCTGG+TGG 0.660376 3:+88067334 MsG0380016801.01.T01:CDS
AGCACAAGAAGCAGTTACGA+TGG 0.668634 3:+88067514 MsG0380016801.01.T01:CDS
ACCAGCGTTGGATACTGGAA+CGG 0.669208 3:-88066557 None:intergenic
CACCGGTGCAAAGACTAACA+GGG 0.672559 3:-88066524 None:intergenic
AGAACTGTAGGTGAAACGAC+CGG 0.674492 3:-88066705 None:intergenic
ACCGTTCCAGTATCCAACGC+TGG 0.677562 3:+88066556 MsG0380016801.01.T01:CDS
GAGCGTGAAGGTAACCGTGG+TGG 0.681535 3:+88067313 MsG0380016801.01.T01:CDS
ACCGGTGCAAAGACTAACAG+GGG 0.687573 3:-88066523 None:intergenic
CTTCAACGCCTTCTCCACCA+CGG 0.688331 3:-88067327 None:intergenic
GATGAATTTCAAAACCCTGG+TGG 0.695060 3:-88067078 None:intergenic
TACGAGCGTGAAGGTAACCG+TGG 0.695428 3:+88067310 MsG0380016801.01.T01:CDS
ATCCAACGCTGGTTAGACGA+CGG 0.729186 3:+88066567 MsG0380016801.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATTTCTTGAACAGACTTTAA+CGG + Chr3:88066914-88066933 MsG0380016801.01.T01:CDS 25.0%
! GAACAAAAACAAAAAATGCT+TGG + Chr3:88067004-88067023 MsG0380016801.01.T01:CDS 25.0%
! TCAAGAAAACTAACCATTAA+CGG - Chr3:88066873-88066892 None:intergenic 25.0%
!!! ATGGTTCTTGTTTTACAAAA+AGG + Chr3:88067032-88067051 MsG0380016801.01.T01:CDS 25.0%
AAACAGAAACTGGTGAAAAT+TGG + Chr3:88067248-88067267 MsG0380016801.01.T01:CDS 30.0%
CAAAAAATGCTTGGATTCAA+TGG + Chr3:88067013-88067032 MsG0380016801.01.T01:CDS 30.0%
GAAAAAATTGAAGATCGTGA+AGG + Chr3:88066954-88066973 MsG0380016801.01.T01:CDS 30.0%
TGTTCATTAGAAAGAACTGT+AGG - Chr3:88066720-88066739 None:intergenic 30.0%
TTAGGTACAAAATCTTTGGT+GGG - Chr3:88066627-88066646 None:intergenic 30.0%
!! CGGATTTGCTTAAGATTTTT+CGG + Chr3:88067606-88067625 MsG0380016801.01.T01:CDS 30.0%
!! GGATTTGCTTAAGATTTTTC+GGG + Chr3:88067607-88067626 MsG0380016801.01.T01:CDS 30.0%
ACAAGTTCGACAAATGTGTA+CGG + Chr3:88067586-88067605 MsG0380016801.01.T01:CDS 35.0%
ACGGTTAGGTACAAAATCTT+TGG - Chr3:88066631-88066650 None:intergenic 35.0%
AGTTTCTGTTTGTTCCGTTT+CGG - Chr3:88067239-88067258 None:intergenic 35.0%
CGAAGATAGATTCAGCAATT+CGG - Chr3:88067156-88067175 None:intergenic 35.0%
CTAATTTCGCGAGAAAAGTT+CGG - Chr3:88066839-88066858 None:intergenic 35.0%
GTTAGGTACAAAATCTTTGG+TGG - Chr3:88066628-88066647 None:intergenic 35.0%
TAGCAATCTCAAAACCGAAA+CGG + Chr3:88067222-88067241 MsG0380016801.01.T01:CDS 35.0%
TGTTCTTTCCTTTCAACACA+AGG - Chr3:88066989-88067008 None:intergenic 35.0%
TTGAAGAACCTTGTGTTGAA+AGG + Chr3:88066978-88066997 MsG0380016801.01.T01:CDS 35.0%
! ACTTTTCTCGCGAAATTAGA+CGG + Chr3:88066840-88066859 MsG0380016801.01.T01:CDS 35.0%
! CGGCATAATATGTGAAGTTT+TGG - Chr3:88067666-88067685 None:intergenic 35.0%
!!! AGACGGTTTTATTCCGTTAA+TGG + Chr3:88066857-88066876 MsG0380016801.01.T01:CDS 35.0%
AGACTATGTAGAGTACGGTT+AGG - Chr3:88066645-88066664 None:intergenic 40.0%
AGCGATGAATTTCAAAACCC+TGG - Chr3:88067084-88067103 None:intergenic 40.0%
ATCAGCTTCGAATCATTCTC+CGG - Chr3:88067179-88067198 None:intergenic 40.0%
ATTCAAGAATCACAACCACC+AGG + Chr3:88067063-88067082 MsG0380016801.01.T01:CDS 40.0%
ATTGCTGAATCTATCTTCGC+CGG + Chr3:88067157-88067176 MsG0380016801.01.T01:CDS 40.0%
CGGCGATACTGAATAAGATT+CGG + Chr3:88067417-88067436 MsG0380016801.01.T01:CDS 40.0%
CTTTCGTGATTAAACCGAAC+CGG - Chr3:88066785-88066804 None:intergenic 40.0%
GAAACGGAACAAACAGAAAC+TGG + Chr3:88067238-88067257 MsG0380016801.01.T01:CDS 40.0%
GAACAGACTTTAACGGTGTT+AGG + Chr3:88066921-88066940 MsG0380016801.01.T01:CDS 40.0%
GATGAATTTCAAAACCCTGG+TGG - Chr3:88067081-88067100 None:intergenic 40.0%
GGATGAGACTATGTAGAGTA+CGG - Chr3:88066650-88066669 None:intergenic 40.0%
GTACACATTTGTCGAACTTG+TGG - Chr3:88067587-88067606 None:intergenic 40.0%
TACATAGTCTCATCCAGATC+TGG + Chr3:88066655-88066674 MsG0380016801.01.T01:CDS 40.0%
TTCAAGAATCACAACCACCA+GGG + Chr3:88067064-88067083 MsG0380016801.01.T01:CDS 40.0%
! GACTTTAACGGTGTTAGGTT+TGG + Chr3:88066926-88066945 MsG0380016801.01.T01:CDS 40.0%
! GAGAAAAGTTCGGTTCTGAT+CGG - Chr3:88066829-88066848 None:intergenic 40.0%
! TAAACCGAACCGGTTTAAAC+CGG - Chr3:88066775-88066794 None:intergenic 40.0%
!! TTTGGTGGGAAGTATTTGCA+TGG - Chr3:88066613-88066632 None:intergenic 40.0%
AAGAGAGATGTGTGAAGACG+CGG + Chr3:88067385-88067404 MsG0380016801.01.T01:CDS 45.0%
AGAACTGTAGGTGAAACGAC+CGG - Chr3:88066708-88066727 None:intergenic 45.0%
AGAGTCTAATACGAGCGTGA+AGG + Chr3:88067301-88067320 MsG0380016801.01.T01:CDS 45.0%
AGCACAAGAAGCAGTTACGA+TGG + Chr3:88067514-88067533 MsG0380016801.01.T01:CDS 45.0%
GAAGCAGTTACGATGGCTAA+TGG + Chr3:88067521-88067540 MsG0380016801.01.T01:CDS 45.0%
GAATGTATCGAACGTTGCGA+CGG + Chr3:88067439-88067458 MsG0380016801.01.T01:CDS 45.0%
TAAACCGGATGAGGCTAAGT+CGG - Chr3:88066760-88066779 None:intergenic 45.0%
TAGCCTCATCCGGTTTAAAC+CGG + Chr3:88066763-88066782 MsG0380016801.01.T01:CDS 45.0%
TCATCCGGTTTAAACCGGTT+CGG + Chr3:88066768-88066787 MsG0380016801.01.T01:CDS 45.0%
! AACGGTGTTAGGTTTGGTTC+TGG + Chr3:88066932-88066951 MsG0380016801.01.T01:CDS 45.0%
! CTAAGTCGGTGATGGTTTGA+AGG - Chr3:88066746-88066765 None:intergenic 45.0%
ACACCGGTGCAAAGACTAAC+AGG - Chr3:88066528-88066547 None:intergenic 50.0%
ACAGCGTCTTCAACGAGTGA+AGG + Chr3:88067359-88067378 MsG0380016801.01.T01:CDS 50.0%
ACCGGTGCAAAGACTAACAG+GGG - Chr3:88066526-88066545 None:intergenic 50.0%
AGAGAGATGTGTGAAGACGC+GGG + Chr3:88067386-88067405 MsG0380016801.01.T01:CDS 50.0%
CACCGGTGCAAAGACTAACA+GGG - Chr3:88066527-88066546 None:intergenic 50.0%
CAGCGTCTTCAACGAGTGAA+GGG + Chr3:88067360-88067379 MsG0380016801.01.T01:CDS 50.0%
CATCCAGATCTGGACCGATT+CGG + Chr3:88066665-88066684 MsG0380016801.01.T01:CDS 50.0%
TTGGATACTGGAACGGTCGT+AGG - Chr3:88066553-88066572 None:intergenic 50.0%
! ACCAGCGTTGGATACTGGAA+CGG - Chr3:88066560-88066579 None:intergenic 50.0%
! ATCCAACGCTGGTTAGACGA+CGG + Chr3:88066567-88066586 MsG0380016801.01.T01:CDS 50.0%
! GAACCGGTTTAAACCGGATG+AGG - Chr3:88066769-88066788 None:intergenic 50.0%
! GTCTAACCAGCGTTGGATAC+TGG - Chr3:88066565-88066584 None:intergenic 50.0%
!! ATCACCGACTTAGCCTCATC+CGG + Chr3:88066753-88066772 MsG0380016801.01.T01:CDS 50.0%
!! GGAAGTATTTGCATGGTGGC+GGG - Chr3:88066606-88066625 None:intergenic 50.0%
!! GGGAAGTATTTGCATGGTGG+CGG - Chr3:88066607-88066626 None:intergenic 50.0%
!! GGTGGGAAGTATTTGCATGG+TGG - Chr3:88066610-88066629 None:intergenic 50.0%
!! TCCCCTGTTAGTCTTTGCAC+CGG + Chr3:88066522-88066541 MsG0380016801.01.T01:CDS 50.0%
ACCGTTCCAGTATCCAACGC+TGG + Chr3:88066556-88066575 MsG0380016801.01.T01:CDS 55.0%
CTTCAACGCCTTCTCCACCA+CGG - Chr3:88067330-88067349 None:intergenic 55.0%
GAACCGAATCGGTCCAGATC+TGG - Chr3:88066671-88066690 None:intergenic 55.0%
GACCCGGTGATGAACCGAAT+CGG - Chr3:88066682-88066701 None:intergenic 55.0%
GAGAGATGTGTGAAGACGCG+GGG + Chr3:88067387-88067406 MsG0380016801.01.T01:CDS 55.0%
GGATGAGGCTAAGTCGGTGA+TGG - Chr3:88066754-88066773 None:intergenic 55.0%
TACCGTCGTCTAACCAGCGT+TGG - Chr3:88066572-88066591 None:intergenic 55.0%
TACGAGCGTGAAGGTAACCG+TGG + Chr3:88067310-88067329 MsG0380016801.01.T01:CDS 55.0%
! GAAGGTAACCGTGGTGGAGA+AGG + Chr3:88067319-88067338 MsG0380016801.01.T01:CDS 55.0%
!! GACCGATTCGGTTCATCACC+GGG + Chr3:88066677-88066696 MsG0380016801.01.T01:CDS 55.0%
!! GGACCGATTCGGTTCATCAC+CGG + Chr3:88066676-88066695 MsG0380016801.01.T01:CDS 55.0%
AGCACGCAGTAACGACGCTG+TGG + Chr3:88067462-88067481 MsG0380016801.01.T01:CDS 60.0%
GAGCGTGAAGGTAACCGTGG+TGG + Chr3:88067313-88067332 MsG0380016801.01.T01:CDS 60.0%
GGAACGGTCGTAGGTGACAC+CGG - Chr3:88066544-88066563 None:intergenic 60.0%
GGTTCATCACCGGGTCGAAC+CGG + Chr3:88066686-88066705 MsG0380016801.01.T01:CDS 60.0%
GTGTGAAGACGCGGGGTTTG+TGG + Chr3:88067394-88067413 MsG0380016801.01.T01:CDS 60.0%
TGAAGACGCGGGGTTTGTGG+CGG + Chr3:88067397-88067416 MsG0380016801.01.T01:CDS 60.0%
!! GGAGAAGGCGTTGAAGCTGG+TGG + Chr3:88067334-88067353 MsG0380016801.01.T01:CDS 60.0%
!! GGTGGAGAAGGCGTTGAAGC+TGG + Chr3:88067331-88067350 MsG0380016801.01.T01:CDS 60.0%
!! GTGAAACGACCGGTTCGACC+CGG - Chr3:88066698-88066717 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 88066516 88067691 88066516 ID=MsG0380016801.01;Name=MsG0380016801.01
Chr3 mRNA 88066516 88067691 88066516 ID=MsG0380016801.01.T01;Parent=MsG0380016801.01;Name=MsG0380016801.01.T01;_AED=0.19;_eAED=0.19;_QI=0|-1|0|1|-1|1|1|0|391
Chr3 exon 88066516 88067691 88066516 ID=MsG0380016801.01.T01:exon:15359;Parent=MsG0380016801.01.T01
Chr3 CDS 88066516 88067691 88066516 ID=MsG0380016801.01.T01:cds;Parent=MsG0380016801.01.T01
Gene Sequence

>MsG0380016801.01.T01

ATGAAATCCCCTGTTAGTCTTTGCACCGGTGTCACCTACGACCGTTCCAGTATCCAACGCTGGTTAGACGACGGTAACAACACGTGTCCCGCCACCATGCAAATACTTCCCACCAAAGATTTTGTACCTAACCGTACTCTACATAGTCTCATCCAGATCTGGACCGATTCGGTTCATCACCGGGTCGAACCGGTCGTTTCACCTACAGTTCTTTCTAATGAACAACTCCTTCAAACCATCACCGACTTAGCCTCATCCGGTTTAAACCGGTTCGGTTTAATCACGAAAGTCATTCGTTTCGCTCAAGATTCCGATCAGAACCGAACTTTTCTCGCGAAATTAGACGGTTTTATTCCGTTAATGGTTAGTTTTCTTGACAATGTTGACAAAAGCATTGAATTTCTTGAACAGACTTTAACGGTGTTAGGTTTGGTTCTGGAAAAAATTGAAGATCGTGAAGGATTGAAGAACCTTGTGTTGAAAGGAAAGAACAAAAACAAAAAATGCTTGGATTCAATGGTTCTTGTTTTACAAAAAGGAAGCAACAATTCAAGAATCACAACCACCAGGGTTTTGAAATTCATCGCTATAGACGCTGAATCAGAGCTTCTAATAGCTGAGAACGAAGCTTTGTTAACCGAATTGCTGAATCTATCTTCGCCGGAGAATGATTCGAAGCTGATTGAAAATTGCTTATCGTGCTTAATAGCAATCTCAAAACCGAAACGGAACAAACAGAAACTGGTGAAAATTGGAGTAATGAAGATTTTGTCAAAGTTACTAAAAGAGTCTAATACGAGCGTGAAGGTAACCGTGGTGGAGAAGGCGTTGAAGCTGGTGGAAACAGCGTCTTCAACGAGTGAAGGGAGAAGAGAGATGTGTGAAGACGCGGGGTTTGTGGCGGCGATACTGAATAAGATTCGGAATGTATCGAACGTTGCGACGGAGCACGCAGTAACGACGCTGTGGAGTGTTTGTTATCTGTTTCGCGATCAGAAAGCACAAGAAGCAGTTACGATGGCTAATGGATTAACGAAGATATTGTTGCTAATACAGAGTAATTGTTCTCCACAAGTTCGACAAATGTGTACGGATTTGCTTAAGATTTTTCGGGTTAATTCTAAATCGTGTCTTTCTTCTTATGATACCAAAACTTCACATATTATGCCGTTTTGA

Protein sequence

>MsG0380016801.01.T01

MKSPVSLCTGVTYDRSSIQRWLDDGNNTCPATMQILPTKDFVPNRTLHSLIQIWTDSVHHRVEPVVSPTVLSNEQLLQTITDLASSGLNRFGLITKVIRFAQDSDQNRTFLAKLDGFIPLMVSFLDNVDKSIEFLEQTLTVLGLVLEKIEDREGLKNLVLKGKNKNKKCLDSMVLVLQKGSNNSRITTTRVLKFIAIDAESELLIAENEALLTELLNLSSPENDSKLIENCLSCLIAISKPKRNKQKLVKIGVMKILSKLLKESNTSVKVTVVEKALKLVETASSTSEGRREMCEDAGFVAAILNKIRNVSNVATEHAVTTLWSVCYLFRDQKAQEAVTMANGLTKILLLIQSNCSPQVRQMCTDLLKIFRVNSKSCLSSYDTKTSHIMPF*