Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000027.01.T01 | XP_013466196.1 | 87.975 | 474 | 22 | 1 | 9 | 447 | 97 | 570 | 0 | 852 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000027.01.T01 | Q9XIL5 | 57.759 | 464 | 160 | 2 | 20 | 447 | 156 | 619 | 0 | 571 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000027.01.T01 | A0A072VEK1 | 87.975 | 474 | 22 | 1 | 9 | 447 | 97 | 570 | 0.0 | 852 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080049040.01 | MsG0180000027.01 | 0.806043 | 9.961036e-50 | 5.352492e-47 |
| MsG0180000027.01 | MsG0180000843.01 | 0.814414 | 1.559761e-51 | 1.045960e-48 |
| MsG0180000027.01 | MsG0180001609.01 | 0.803007 | 4.281239e-49 | 2.127628e-46 |
| MsG0180000027.01 | MsG0180001929.01 | 0.814006 | 1.919431e-51 | 1.272913e-48 |
| MsG0180000027.01 | MsG0180005349.01 | 0.820847 | 5.525154e-53 | 4.421811e-50 |
| MsG0180000027.01 | MsG0180005803.01 | 0.802514 | 5.410871e-49 | 2.655572e-46 |
| MsG0180000027.01 | MsG0280006571.01 | 0.806002 | 1.016346e-49 | 5.455690e-47 |
| MsG0180000027.01 | MsG0280008223.01 | 0.830089 | 3.573683e-55 | 3.727118e-52 |
| MsG0180000027.01 | MsG0280011180.01 | 0.806834 | 6.786349e-50 | 3.721091e-47 |
| MsG0180000027.01 | MsG0380016194.01 | 0.800529 | 1.380904e-48 | 6.444627e-46 |
| MsG0180000027.01 | MsG0380016284.01 | 0.800198 | 1.612632e-48 | 7.463049e-46 |
| MsG0180000027.01 | MsG0380017532.01 | 0.807703 | 4.439431e-50 | 2.489777e-47 |
| MsG0180000027.01 | MsG0480018905.01 | 0.819491 | 1.129694e-52 | 8.706304e-50 |
| MsG0180000027.01 | MsG0480021817.01 | 0.805518 | 1.284050e-49 | 6.807075e-47 |
| MsG0180000027.01 | MsG0480022646.01 | 0.811611 | 6.418827e-51 | 3.991310e-48 |
| MsG0180000027.01 | MsG0480023367.01 | 0.807330 | 5.328431e-50 | 2.959590e-47 |
| MsG0180000027.01 | MsG0480023389.01 | 0.804317 | 2.289643e-49 | 1.176843e-46 |
| MsG0180000027.01 | MsG0480023845.01 | 0.808359 | 3.220259e-50 | 1.837546e-47 |
| MsG0180000027.01 | MsG0580024679.01 | 0.800014 | 1.757924e-48 | 8.097581e-46 |
| MsG0180000027.01 | MsG0580028111.01 | 0.823358 | 1.445705e-53 | 1.241893e-50 |
| MsG0180000027.01 | MsG0580029605.01 | 0.806718 | 7.177780e-50 | 3.923947e-47 |
| MsG0180000027.01 | MsG0680031115.01 | 0.815460 | 9.139264e-52 | 6.305179e-49 |
| MsG0180000027.01 | MsG0780040061.01 | 0.809939 | 1.476988e-50 | 8.787458e-48 |
| MsG0180000027.01 | MsG0780041442.01 | 0.811181 | 7.961430e-51 | 4.894860e-48 |
| MsG0180000027.01 | MsG0880042290.01 | 0.808535 | 2.953490e-50 | 1.692996e-47 |
| MsG0180000027.01 | MsG0880044884.01 | 0.830177 | 3.400313e-55 | 3.555757e-52 |
| MsG0180000027.01 | MsG0880046054.01 | 0.814805 | 1.277620e-51 | 8.658166e-49 |
| MsG0180000027.01 | MsG0880046764.01 | 0.802918 | 4.466255e-49 | 2.214735e-46 |
| MsG0180000027.01 | MsG0880047656.01 | 0.813845 | 2.082838e-51 | 1.375234e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000027.01.T01 | MTR_1g026035 | 87.975 | 474 | 22 | 1 | 9 | 447 | 97 | 570 | 0.0 | 852 |
| MsG0180000027.01.T01 | MTR_0381s0010 | 95.225 | 356 | 17 | 0 | 92 | 447 | 1 | 356 | 0.0 | 699 |
| MsG0180000027.01.T01 | MTR_1g112240 | 22.782 | 417 | 271 | 12 | 40 | 420 | 77 | 478 | 3.89e-18 | 87.4 |
| MsG0180000027.01.T01 | MTR_3g053350 | 28.269 | 283 | 187 | 8 | 124 | 404 | 509 | 777 | 1.30e-17 | 86.3 |
| MsG0180000027.01.T01 | MTR_5g008300 | 24.715 | 263 | 185 | 6 | 123 | 384 | 322 | 572 | 2.95e-16 | 82.0 |
| MsG0180000027.01.T01 | MTR_0014s0250 | 22.753 | 356 | 259 | 9 | 69 | 423 | 167 | 507 | 1.05e-14 | 76.6 |
| MsG0180000027.01.T01 | MTR_3g105900 | 22.343 | 367 | 260 | 10 | 64 | 423 | 266 | 614 | 2.16e-14 | 76.3 |
| MsG0180000027.01.T01 | MTR_6g079180 | 20.988 | 324 | 235 | 8 | 87 | 408 | 32 | 336 | 4.85e-14 | 73.9 |
| MsG0180000027.01.T01 | MTR_6g079210 | 20.792 | 303 | 224 | 7 | 108 | 408 | 48 | 336 | 9.58e-14 | 73.2 |
| MsG0180000027.01.T01 | MTR_6g077540 | 20.323 | 310 | 231 | 7 | 101 | 408 | 223 | 518 | 1.18e-13 | 73.6 |
| MsG0180000027.01.T01 | MTR_4g108060 | 25.087 | 287 | 186 | 9 | 108 | 385 | 145 | 411 | 1.33e-13 | 72.8 |
| MsG0180000027.01.T01 | MTR_4g108060 | 25.229 | 218 | 143 | 6 | 114 | 327 | 221 | 422 | 5.54e-11 | 64.7 |
| MsG0180000027.01.T01 | MTR_6g079250 | 21.613 | 310 | 227 | 8 | 101 | 408 | 41 | 336 | 1.38e-13 | 72.4 |
| MsG0180000027.01.T01 | MTR_1g114300 | 27.895 | 190 | 125 | 4 | 93 | 282 | 306 | 483 | 1.55e-13 | 73.2 |
| MsG0180000027.01.T01 | MTR_1g114300 | 22.837 | 289 | 203 | 8 | 117 | 401 | 225 | 497 | 3.23e-12 | 68.9 |
| MsG0180000027.01.T01 | MTR_7g012890 | 22.283 | 368 | 269 | 9 | 78 | 444 | 176 | 527 | 1.98e-13 | 72.8 |
| MsG0180000027.01.T01 | MTR_4g108060 | 25.436 | 287 | 185 | 9 | 108 | 385 | 279 | 545 | 2.28e-13 | 72.4 |
| MsG0180000027.01.T01 | MTR_4g108060 | 26.147 | 218 | 141 | 6 | 114 | 327 | 355 | 556 | 7.75e-11 | 64.7 |
| MsG0180000027.01.T01 | MTR_5g095130 | 25.203 | 369 | 231 | 14 | 64 | 416 | 404 | 743 | 2.58e-13 | 72.8 |
| MsG0180000027.01.T01 | MTR_4g074390 | 25.263 | 285 | 188 | 8 | 108 | 385 | 279 | 545 | 3.42e-13 | 72.0 |
| MsG0180000027.01.T01 | MTR_0014s0180 | 22.047 | 381 | 278 | 9 | 67 | 444 | 165 | 529 | 8.29e-13 | 70.9 |
| MsG0180000027.01.T01 | MTR_7g091410 | 23.039 | 408 | 269 | 10 | 57 | 429 | 140 | 537 | 8.89e-13 | 70.9 |
| MsG0180000027.01.T01 | MTR_7g091410 | 23.039 | 408 | 269 | 10 | 57 | 429 | 1 | 398 | 1.27e-12 | 70.5 |
| MsG0180000027.01.T01 | MTR_4g075270 | 20.725 | 386 | 257 | 6 | 38 | 423 | 470 | 806 | 3.47e-12 | 69.3 |
| MsG0180000027.01.T01 | MTR_3g061000 | 20.544 | 331 | 216 | 7 | 99 | 429 | 206 | 489 | 3.50e-12 | 68.6 |
| MsG0180000027.01.T01 | MTR_0308s0020 | 22.289 | 332 | 243 | 7 | 78 | 408 | 171 | 488 | 3.99e-12 | 68.6 |
| MsG0180000027.01.T01 | MTR_4g107210 | 21.447 | 387 | 253 | 6 | 51 | 436 | 87 | 423 | 5.18e-12 | 68.6 |
| MsG0180000027.01.T01 | MTR_3g034990 | 22.043 | 372 | 265 | 11 | 78 | 444 | 185 | 536 | 1.39e-11 | 67.0 |
| MsG0180000027.01.T01 | MTR_8g105170 | 21.282 | 390 | 274 | 12 | 41 | 420 | 322 | 688 | 1.43e-11 | 67.4 |
| MsG0180000027.01.T01 | MTR_2g030540 | 21.829 | 339 | 243 | 9 | 51 | 384 | 170 | 491 | 1.83e-11 | 66.6 |
| MsG0180000027.01.T01 | MTR_3g088950 | 21.849 | 357 | 257 | 10 | 64 | 416 | 111 | 449 | 1.84e-11 | 66.6 |
| MsG0180000027.01.T01 | MTR_5g007250 | 23.256 | 344 | 228 | 10 | 62 | 384 | 454 | 782 | 2.23e-11 | 66.6 |
| MsG0180000027.01.T01 | MTR_8g103480 | 22.090 | 335 | 228 | 8 | 102 | 431 | 123 | 429 | 3.00e-11 | 65.9 |
| MsG0180000027.01.T01 | MTR_6g471100 | 20.132 | 303 | 228 | 6 | 108 | 408 | 284 | 574 | 3.54e-11 | 65.9 |
| MsG0180000027.01.T01 | MTR_6g080210 | 24.601 | 313 | 190 | 8 | 131 | 408 | 83 | 384 | 3.76e-11 | 65.5 |
| MsG0180000027.01.T01 | MTR_3g448620 | 22.636 | 349 | 246 | 9 | 101 | 444 | 192 | 521 | 4.24e-11 | 65.5 |
| MsG0180000027.01.T01 | MTR_3g037490 | 24.535 | 269 | 188 | 8 | 118 | 384 | 139 | 394 | 4.95e-11 | 65.1 |
| MsG0180000027.01.T01 | MTR_8g089700 | 22.571 | 350 | 241 | 11 | 80 | 420 | 127 | 455 | 5.27e-11 | 65.1 |
| MsG0180000027.01.T01 | MTR_7g091410 | 23.529 | 340 | 217 | 8 | 124 | 429 | 3 | 333 | 6.80e-11 | 64.7 |
| MsG0180000027.01.T01 | MTR_4g068360 | 21.835 | 316 | 229 | 8 | 108 | 420 | 223 | 523 | 7.29e-11 | 64.7 |
| MsG0180000027.01.T01 | MTR_6g079380 | 20.323 | 310 | 220 | 6 | 101 | 408 | 207 | 491 | 7.97e-11 | 64.3 |
| MsG0180000027.01.T01 | MTR_1g031720 | 22.569 | 288 | 209 | 6 | 117 | 403 | 327 | 601 | 8.29e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000027.01.T01 | AT2G15820 | 57.759 | 464 | 160 | 2 | 20 | 447 | 156 | 619 | 0.0 | 571 |
| MsG0180000027.01.T01 | AT1G13040 | 24.425 | 348 | 245 | 9 | 77 | 420 | 123 | 456 | 1.66e-16 | 82.0 |
| MsG0180000027.01.T01 | AT1G13040 | 24.425 | 348 | 245 | 9 | 77 | 420 | 123 | 456 | 1.66e-16 | 82.0 |
| MsG0180000027.01.T01 | AT5G64320 | 24.364 | 275 | 195 | 5 | 135 | 408 | 351 | 613 | 7.29e-15 | 77.4 |
| MsG0180000027.01.T01 | AT3G53700 | 23.279 | 305 | 207 | 7 | 124 | 420 | 211 | 496 | 8.38e-14 | 74.3 |
| MsG0180000027.01.T01 | AT3G18110 | 25.000 | 268 | 187 | 7 | 123 | 388 | 283 | 538 | 1.17e-13 | 73.9 |
| MsG0180000027.01.T01 | AT3G48810 | 25.839 | 298 | 189 | 12 | 131 | 420 | 105 | 378 | 1.93e-13 | 72.8 |
| MsG0180000027.01.T01 | AT4G20090 | 22.969 | 357 | 251 | 11 | 72 | 422 | 193 | 531 | 4.56e-13 | 71.6 |
| MsG0180000027.01.T01 | AT4G20090 | 22.969 | 357 | 251 | 11 | 72 | 422 | 193 | 531 | 4.56e-13 | 71.6 |
| MsG0180000027.01.T01 | AT1G12620 | 23.729 | 295 | 201 | 10 | 116 | 404 | 121 | 397 | 1.21e-12 | 70.5 |
| MsG0180000027.01.T01 | AT1G06710 | 22.888 | 367 | 245 | 12 | 41 | 404 | 458 | 789 | 2.02e-12 | 70.1 |
| MsG0180000027.01.T01 | AT1G06710 | 22.888 | 367 | 245 | 12 | 41 | 404 | 458 | 789 | 2.02e-12 | 70.1 |
| MsG0180000027.01.T01 | AT1G06710 | 22.888 | 367 | 245 | 12 | 41 | 404 | 458 | 789 | 2.02e-12 | 70.1 |
| MsG0180000027.01.T01 | AT1G06710 | 22.888 | 367 | 245 | 12 | 41 | 404 | 458 | 789 | 2.02e-12 | 70.1 |
| MsG0180000027.01.T01 | AT1G06710 | 22.888 | 367 | 245 | 12 | 41 | 404 | 458 | 789 | 2.02e-12 | 70.1 |
| MsG0180000027.01.T01 | AT1G06710 | 22.888 | 367 | 245 | 12 | 41 | 404 | 458 | 789 | 2.02e-12 | 70.1 |
| MsG0180000027.01.T01 | AT1G06710 | 22.888 | 367 | 245 | 12 | 41 | 404 | 458 | 789 | 2.02e-12 | 70.1 |
| MsG0180000027.01.T01 | AT1G06710 | 22.888 | 367 | 245 | 12 | 41 | 404 | 458 | 789 | 2.02e-12 | 70.1 |
| MsG0180000027.01.T01 | AT1G06710 | 22.888 | 367 | 245 | 12 | 41 | 404 | 458 | 789 | 2.02e-12 | 70.1 |
| MsG0180000027.01.T01 | AT1G06710 | 22.888 | 367 | 245 | 12 | 41 | 404 | 458 | 789 | 2.02e-12 | 70.1 |
| MsG0180000027.01.T01 | AT1G06710 | 22.888 | 367 | 245 | 12 | 41 | 404 | 458 | 789 | 2.02e-12 | 70.1 |
| MsG0180000027.01.T01 | AT1G06710 | 22.888 | 367 | 245 | 12 | 41 | 404 | 458 | 789 | 2.02e-12 | 70.1 |
| MsG0180000027.01.T01 | AT5G16640 | 25.243 | 309 | 202 | 12 | 124 | 423 | 173 | 461 | 2.12e-12 | 69.3 |
| MsG0180000027.01.T01 | AT1G06710 | 22.888 | 367 | 245 | 12 | 41 | 404 | 458 | 789 | 2.36e-12 | 69.7 |
| MsG0180000027.01.T01 | AT1G06710 | 22.888 | 367 | 245 | 12 | 41 | 404 | 458 | 789 | 2.36e-12 | 69.7 |
| MsG0180000027.01.T01 | AT1G06710 | 22.888 | 367 | 245 | 12 | 41 | 404 | 458 | 789 | 2.36e-12 | 69.7 |
| MsG0180000027.01.T01 | AT1G06710 | 22.888 | 367 | 245 | 12 | 41 | 404 | 458 | 789 | 2.36e-12 | 69.7 |
| MsG0180000027.01.T01 | AT1G06710 | 22.888 | 367 | 245 | 12 | 41 | 404 | 458 | 789 | 2.36e-12 | 69.7 |
| MsG0180000027.01.T01 | AT1G06710 | 22.888 | 367 | 245 | 12 | 41 | 404 | 458 | 789 | 2.36e-12 | 69.7 |
| MsG0180000027.01.T01 | AT1G06710 | 22.888 | 367 | 245 | 12 | 41 | 404 | 458 | 789 | 2.36e-12 | 69.7 |
| MsG0180000027.01.T01 | AT5G61990 | 24.080 | 299 | 211 | 8 | 124 | 420 | 439 | 723 | 3.48e-12 | 69.3 |
| MsG0180000027.01.T01 | AT3G49730 | 22.812 | 320 | 226 | 9 | 114 | 428 | 248 | 551 | 5.89e-12 | 68.2 |
| MsG0180000027.01.T01 | AT2G31400 | 22.703 | 370 | 241 | 10 | 56 | 390 | 186 | 545 | 6.40e-12 | 68.6 |
| MsG0180000027.01.T01 | AT2G31400 | 22.703 | 370 | 241 | 10 | 56 | 390 | 186 | 545 | 6.62e-12 | 68.2 |
| MsG0180000027.01.T01 | AT3G54980 | 21.538 | 390 | 251 | 10 | 38 | 423 | 275 | 613 | 7.08e-12 | 68.2 |
| MsG0180000027.01.T01 | AT3G54980 | 21.538 | 390 | 251 | 10 | 38 | 423 | 275 | 613 | 7.08e-12 | 68.2 |
| MsG0180000027.01.T01 | AT1G09820 | 22.997 | 387 | 239 | 11 | 83 | 418 | 82 | 460 | 9.00e-12 | 67.8 |
| MsG0180000027.01.T01 | AT1G05670 | 22.741 | 321 | 232 | 8 | 117 | 435 | 331 | 637 | 9.78e-12 | 67.8 |
| MsG0180000027.01.T01 | AT1G05670 | 22.741 | 321 | 232 | 8 | 117 | 435 | 331 | 637 | 9.78e-12 | 67.8 |
| MsG0180000027.01.T01 | AT1G05670 | 22.741 | 321 | 232 | 8 | 117 | 435 | 331 | 637 | 9.78e-12 | 67.8 |
| MsG0180000027.01.T01 | AT2G35130 | 20.604 | 364 | 245 | 10 | 88 | 417 | 141 | 494 | 1.37e-11 | 67.0 |
| MsG0180000027.01.T01 | AT1G63080 | 25.818 | 275 | 176 | 10 | 156 | 422 | 256 | 510 | 1.45e-11 | 67.0 |
| MsG0180000027.01.T01 | AT1G63080 | 25.818 | 275 | 176 | 10 | 156 | 422 | 256 | 510 | 1.45e-11 | 67.0 |
| MsG0180000027.01.T01 | AT1G63080 | 25.818 | 275 | 176 | 10 | 156 | 422 | 256 | 510 | 1.45e-11 | 67.0 |
| MsG0180000027.01.T01 | AT5G02860 | 21.461 | 438 | 298 | 12 | 46 | 449 | 259 | 684 | 1.80e-11 | 67.0 |
| MsG0180000027.01.T01 | AT5G02860 | 21.461 | 438 | 298 | 12 | 46 | 449 | 259 | 684 | 1.80e-11 | 67.0 |
| MsG0180000027.01.T01 | AT5G02860 | 21.461 | 438 | 298 | 12 | 46 | 449 | 259 | 684 | 1.80e-11 | 67.0 |
| MsG0180000027.01.T01 | AT5G02860 | 21.461 | 438 | 298 | 12 | 46 | 449 | 259 | 684 | 1.80e-11 | 67.0 |
| MsG0180000027.01.T01 | AT5G02860 | 21.461 | 438 | 298 | 12 | 46 | 449 | 259 | 684 | 1.80e-11 | 67.0 |
| MsG0180000027.01.T01 | AT4G31850 | 24.735 | 283 | 199 | 7 | 124 | 405 | 140 | 409 | 3.17e-11 | 66.2 |
| MsG0180000027.01.T01 | AT4G31850 | 21.229 | 358 | 261 | 9 | 71 | 422 | 259 | 601 | 9.28e-11 | 64.7 |
| MsG0180000027.01.T01 | AT5G50280 | 21.549 | 297 | 187 | 7 | 157 | 416 | 290 | 577 | 3.76e-11 | 65.9 |
| MsG0180000027.01.T01 | AT5G50280 | 24.221 | 289 | 201 | 7 | 93 | 377 | 370 | 644 | 4.52e-11 | 65.5 |
| MsG0180000027.01.T01 | AT1G80550 | 20.833 | 312 | 224 | 10 | 83 | 388 | 62 | 356 | 5.79e-11 | 64.7 |
| MsG0180000027.01.T01 | AT1G12775 | 23.596 | 267 | 185 | 6 | 159 | 420 | 142 | 394 | 6.41e-11 | 65.1 |
Find 111 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCAATTTCATACTTATTT+TGG | 0.134963 | 1:+473567 | None:intergenic |
| ATATTTATGGTGGCCTAATT+TGG | 0.196709 | 1:-474281 | MsG0180000027.01.T01:CDS |
| TGAAATTGATGCCCCATTAA+TGG | 0.248077 | 1:-473555 | MsG0180000027.01.T01:CDS |
| TTCTATTCTTTCTTTGTCTA+TGG | 0.251309 | 1:+474239 | None:intergenic |
| TATGGAATCACATGATAAAT+TGG | 0.256096 | 1:-473822 | MsG0180000027.01.T01:CDS |
| CATGATTGATTCTGCAAATT+CGG | 0.273446 | 1:+473916 | None:intergenic |
| ACTAAACATGTACTTCAATA+TGG | 0.284965 | 1:-473840 | MsG0180000027.01.T01:CDS |
| GATAGCTATGCAGCCAAATT+AGG | 0.290210 | 1:+474268 | None:intergenic |
| TAGTATATATTTAGATTCTT+TGG | 0.296485 | 1:-473747 | MsG0180000027.01.T01:CDS |
| TTCTTCTGTTCAAGGTTGTT+TGG | 0.305268 | 1:-474487 | MsG0180000027.01.T01:CDS |
| ATACTATATATAACACTATT+AGG | 0.314376 | 1:+473764 | None:intergenic |
| AATTTGGCTGCATAGCTATC+AGG | 0.319175 | 1:-474265 | MsG0180000027.01.T01:CDS |
| TACCTTAGTTCTTCTGTTCA+AGG | 0.335736 | 1:-474495 | MsG0180000027.01.T01:CDS |
| GCGAGAACGAAACCGCGTTT+AGG | 0.343042 | 1:-475422 | MsG0180000027.01.T01:CDS |
| CAGAGTTGCTTGGCTTTGTA+AGG | 0.349174 | 1:-475553 | MsG0180000027.01.T01:CDS |
| ATATTCAGGAAATCACTTAA+AGG | 0.349756 | 1:-473615 | MsG0180000027.01.T01:CDS |
| GGTAAGCCACAATCAATATA+TGG | 0.352346 | 1:+474514 | None:intergenic |
| TTAAGTGATTTCCTGAATAT+AGG | 0.360058 | 1:+473618 | None:intergenic |
| ATAAGGCGGGGACTTTGATT+AGG | 0.373927 | 1:-475518 | MsG0180000027.01.T01:CDS |
| TTGGCTTTGTAAGGAGTTAC+CGG | 0.390410 | 1:-475544 | MsG0180000027.01.T01:CDS |
| TTACATGGATACCTATATTC+AGG | 0.393280 | 1:-473629 | MsG0180000027.01.T01:CDS |
| CGAGAACGAAACCGCGTTTA+GGG | 0.394042 | 1:-475421 | MsG0180000027.01.T01:intron |
| TTAGATTCTTTGGTGAAAGT+TGG | 0.397946 | 1:-473737 | MsG0180000027.01.T01:CDS |
| AATAAACATATGATGGTGTA+AGG | 0.401918 | 1:+473864 | None:intergenic |
| ATTCCACCGAATGATTCAAT+TGG | 0.404834 | 1:-474448 | MsG0180000027.01.T01:CDS |
| TAAGGAGTTACCGGCGCATA+AGG | 0.411126 | 1:-475535 | MsG0180000027.01.T01:CDS |
| TGAGTTTATATATCATCGTT+TGG | 0.412181 | 1:-474331 | MsG0180000027.01.T01:CDS |
| CAAAATGGAAGTCCACTCTA+AGG | 0.416614 | 1:-474053 | MsG0180000027.01.T01:CDS |
| ATATAAACTCAGCTTGCTTA+AGG | 0.416737 | 1:+474343 | None:intergenic |
| AATATCTCCAAGGACTTCAT+AGG | 0.423483 | 1:+474022 | None:intergenic |
| AAACAAGCGGCTGCCGCGTC+CGG | 0.426245 | 1:-475625 | MsG0180000027.01.T01:CDS |
| CTTACAAAGCCAAGCAACTC+TGG | 0.435872 | 1:+475554 | None:intergenic |
| CCGTTTCGCAGGGGTGGAGG+AGG | 0.438291 | 1:-475655 | MsG0180000027.01.T01:intron |
| TTTGATGATATTATCAATCA+AGG | 0.443335 | 1:-474561 | MsG0180000027.01.T01:CDS |
| TATATGGAACGTGGACTCGC+TGG | 0.444107 | 1:+474530 | None:intergenic |
| TATCATCGTTTGGTTACAAA+TGG | 0.445733 | 1:-474321 | MsG0180000027.01.T01:CDS |
| TAAGATGATGTTACATGATC+GGG | 0.446858 | 1:+473649 | None:intergenic |
| TTCTGAATGGGCAGAGGAAG+TGG | 0.455423 | 1:-475494 | MsG0180000027.01.T01:CDS |
| CCTGCTTAAAGGTATACAAA+TGG | 0.464867 | 1:-474683 | MsG0180000027.01.T01:intron |
| GATGTGCATAAAGATATTTA+TGG | 0.465782 | 1:-474294 | MsG0180000027.01.T01:CDS |
| TGCTTGCATCACGAAACATT+TGG | 0.473277 | 1:+473684 | None:intergenic |
| TGAGTGAGGTGCCGGAGCTA+TGG | 0.474011 | 1:-475584 | MsG0180000027.01.T01:CDS |
| AAGTTGAAACTAGGTAAGAT+AGG | 0.481244 | 1:-473989 | MsG0180000027.01.T01:CDS |
| TTTCCGTTTCGCAGGGGTGG+AGG | 0.485521 | 1:-475658 | MsG0180000027.01.T01:intron |
| GAGTTACCGGCGCATAAGGC+GGG | 0.488242 | 1:-475531 | MsG0180000027.01.T01:CDS |
| GGCGGAGGTCCAGAGTTGCT+TGG | 0.489260 | 1:-475563 | MsG0180000027.01.T01:CDS |
| ATCCACCCAATTGAATCATT+CGG | 0.490712 | 1:+474442 | None:intergenic |
| GTTGGTAAAATTGACAAGGC+TGG | 0.491220 | 1:-473719 | MsG0180000027.01.T01:CDS |
| TTCCACCGAATGATTCAATT+GGG | 0.494453 | 1:-474447 | MsG0180000027.01.T01:CDS |
| TACTGCTTTGAAAAGTTCCC+TGG | 0.496818 | 1:+474366 | None:intergenic |
| AACTCCTTCACATCAACCTC+CGG | 0.497765 | 1:+475606 | None:intergenic |
| TTTAGTAAATAAACATATGA+TGG | 0.501648 | 1:+473857 | None:intergenic |
| TACTAGGCTAGCAGATTACA+TGG | 0.508890 | 1:-474619 | MsG0180000027.01.T01:CDS |
| ACTTTGATTAGGATTCTGAA+TGG | 0.510245 | 1:-475507 | MsG0180000027.01.T01:CDS |
| AACCTTGAACAGAAGAACTA+AGG | 0.520036 | 1:+474493 | None:intergenic |
| CACGTTCCATATATTGATTG+TGG | 0.521967 | 1:-474520 | MsG0180000027.01.T01:CDS |
| TGATGCAACGGAGTTGGTAT+CGG | 0.527693 | 1:-474659 | MsG0180000027.01.T01:CDS |
| GTAAGATGATGTTACATGAT+CGG | 0.529110 | 1:+473648 | None:intergenic |
| TCATGTAACATCATCTTACA+TGG | 0.535360 | 1:-473644 | MsG0180000027.01.T01:CDS |
| GCAGAGGAAGTGGTTGAGGC+AGG | 0.535779 | 1:-475484 | MsG0180000027.01.T01:CDS |
| AAATATCTTTATGCACATCA+AGG | 0.541678 | 1:+474298 | None:intergenic |
| TGGTATGCCTATGAAGTCCT+TGG | 0.542710 | 1:-474029 | MsG0180000027.01.T01:CDS |
| CGCTTATAAGAGCTTTGAAG+AGG | 0.543004 | 1:+474391 | None:intergenic |
| ATGGGCAGAGGAAGTGGTTG+AGG | 0.545504 | 1:-475488 | MsG0180000027.01.T01:CDS |
| AGAGAAATGAAGTTGAAACT+AGG | 0.546888 | 1:-473998 | MsG0180000027.01.T01:CDS |
| GCGTCCGGAGGTTGATGTGA+AGG | 0.547281 | 1:-475610 | MsG0180000027.01.T01:CDS |
| CTGGACCTCCGCCATAGCTC+CGG | 0.547816 | 1:+475573 | None:intergenic |
| AATGGATGATGCAACGGAGT+TGG | 0.551069 | 1:-474665 | MsG0180000027.01.T01:CDS |
| ATCACATGATAAATTGGAAG+AGG | 0.554760 | 1:-473816 | MsG0180000027.01.T01:CDS |
| ATATGGAACGTGGACTCGCT+GGG | 0.555396 | 1:+474531 | None:intergenic |
| CACCGAATGATTCAATTGGG+TGG | 0.555489 | 1:-474444 | MsG0180000027.01.T01:CDS |
| ATGTTTCGTGATGCAAGCAT+TGG | 0.561669 | 1:-473680 | MsG0180000027.01.T01:CDS |
| TAAACATATGATGGTGTAAG+GGG | 0.566401 | 1:+473866 | None:intergenic |
| CTTTGATTAGGATTCTGAAT+GGG | 0.569163 | 1:-475506 | MsG0180000027.01.T01:CDS |
| ATGGAAGTCCACTCTAAGGT+TGG | 0.573408 | 1:-474049 | MsG0180000027.01.T01:CDS |
| ACGTGGACTCGCTGGGAACA+CGG | 0.577330 | 1:+474538 | None:intergenic |
| CAAGCGGCTGCCGCGTCCGG+AGG | 0.577693 | 1:-475622 | MsG0180000027.01.T01:CDS |
| GTGAGGTGCCGGAGCTATGG+CGG | 0.580371 | 1:-475581 | MsG0180000027.01.T01:CDS |
| ATAAACATATGATGGTGTAA+GGG | 0.580524 | 1:+473865 | None:intergenic |
| ATATCATTATGCATTGCTTG+CGG | 0.581518 | 1:-475449 | MsG0180000027.01.T01:CDS |
| AAAGTCCCCGCCTTATGCGC+CGG | 0.582323 | 1:+475525 | None:intergenic |
| AAAGCTCTTATAAGCGAACC+AGG | 0.587841 | 1:-474384 | MsG0180000027.01.T01:CDS |
| AGTTACCGGCGCATAAGGCG+GGG | 0.590910 | 1:-475530 | MsG0180000027.01.T01:CDS |
| TATATATAACACTATTAGGA+TGG | 0.591675 | 1:+473768 | None:intergenic |
| TTCACATCAACCTCCGGACG+CGG | 0.594497 | 1:+475612 | None:intergenic |
| TTAGGATTCTGAATGGGCAG+AGG | 0.597519 | 1:-475500 | MsG0180000027.01.T01:CDS |
| AGGTGCCGGAGCTATGGCGG+AGG | 0.598308 | 1:-475578 | MsG0180000027.01.T01:CDS |
| TATGCAAGCTAAGACGCGGC+TGG | 0.601478 | 1:+474418 | None:intergenic |
| GAAGGAGTTGAGTGAGGTGC+CGG | 0.609700 | 1:-475592 | MsG0180000027.01.T01:CDS |
| AAGAAAGAATAGAAGCATTG+AGG | 0.611980 | 1:-474230 | MsG0180000027.01.T01:CDS |
| CATTTCTCTAAATATCTCCA+AGG | 0.612521 | 1:+474012 | None:intergenic |
| GGAGTTACCGGCGCATAAGG+CGG | 0.615516 | 1:-475532 | MsG0180000027.01.T01:CDS |
| AATACATCCAGAGTTTGAGA+AGG | 0.618189 | 1:-473523 | MsG0180000027.01.T01:CDS |
| TATACAAATGGATGATGCAA+CGG | 0.619265 | 1:-474671 | MsG0180000027.01.T01:CDS |
| CACCCAATTGAATCATTCGG+TGG | 0.622335 | 1:+474445 | None:intergenic |
| TATTAGGATGGCATTTCTCG+AGG | 0.625254 | 1:+473780 | None:intergenic |
| GCTTATAAGAGCTTTGAAGA+GGG | 0.626136 | 1:+474392 | None:intergenic |
| AGGCAAGAGATGCTACGCGC+TGG | 0.626231 | 1:-474210 | MsG0180000027.01.T01:CDS |
| TAATATCATCAAATACCTCA+CGG | 0.632598 | 1:+474571 | None:intergenic |
| TAGGCATACCAACCTTAGAG+TGG | 0.638621 | 1:+474041 | None:intergenic |
| TGATGTGAAGGAGTTGAGTG+AGG | 0.642505 | 1:-475598 | MsG0180000027.01.T01:CDS |
| CACAATCAATATATGGAACG+TGG | 0.669238 | 1:+474521 | None:intergenic |
| AGGAGGCTGAAGAAAACAAG+CGG | 0.696169 | 1:-475638 | MsG0180000027.01.T01:CDS |
| GTGCATAAAGATATTTATGG+TGG | 0.703198 | 1:-474291 | MsG0180000027.01.T01:CDS |
| GAATTATGCAAGCTAAGACG+CGG | 0.705558 | 1:+474414 | None:intergenic |
| ACTAGGCTAGCAGATTACAT+GGG | 0.706145 | 1:-474618 | MsG0180000027.01.T01:CDS |
| CAAGTTTACAAAGTGCCGTG+AGG | 0.713955 | 1:-474586 | MsG0180000027.01.T01:CDS |
| TGGTATTGATGAAAACCAAG+AGG | 0.717050 | 1:-474190 | MsG0180000027.01.T01:intron |
| AAGCTCTTATAAGCGAACCA+GGG | 0.725063 | 1:-474383 | MsG0180000027.01.T01:CDS |
| ATACTGACTGACCCTAAACG+CGG | 0.751990 | 1:+475410 | None:intergenic |
| GAAAGTTGGTAAAATTGACA+AGG | 0.752517 | 1:-473723 | MsG0180000027.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATAAATAAATAAAT+AGG | - | Chr1:473779-473798 | MsG0180000027.01.T01:CDS | 0.0% |
| !! | AATAAATAAATAAATAAATA+GGG | - | Chr1:473776-473795 | MsG0180000027.01.T01:CDS | 0.0% |
| !!! | ATAACAATATCAATATTTTT+AGG | + | Chr1:473606-473625 | None:intergenic | 10.0% |
| !! | AAAAAAACTAAATCTATGTT+TGG | + | Chr1:474644-474663 | None:intergenic | 15.0% |
| !! | ATACTATATATAACACTATT+AGG | + | Chr1:476080-476099 | None:intergenic | 15.0% |
| !! | TAGTATATATTTAGATTCTT+TGG | - | Chr1:476094-476113 | MsG0180000027.01.T01:intron | 15.0% |
| !! | TTTAGTAAATAAACATATGA+TGG | + | Chr1:475987-476006 | None:intergenic | 15.0% |
| !! | AATTTCTTTCTTGAATATCT+AGG | + | Chr1:474735-474754 | None:intergenic | 20.0% |
| !! | CAGGGAAAATAATTAAATTT+GGG | + | Chr1:475142-475161 | None:intergenic | 20.0% |
| !! | CTGATTTCATAATAAATTCA+AGG | + | Chr1:474974-474993 | None:intergenic | 20.0% |
| !! | TAGATATTCAAGAAAGAAAT+TGG | - | Chr1:474734-474753 | MsG0180000027.01.T01:intron | 20.0% |
| !! | TATATATAACACTATTAGGA+TGG | + | Chr1:476076-476095 | None:intergenic | 20.0% |
| !!! | AAGGTTTTAGTTACTAATAT+CGG | - | Chr1:474848-474867 | MsG0180000027.01.T01:intron | 20.0% |
| !!! | AGTGTCTTTTTTTTTTTTTG+TGG | - | Chr1:473651-473670 | MsG0180000027.01.T01:CDS | 20.0% |
| !!! | ATTCAAGTTTTTCCATTAAT+GGG | + | Chr1:476301-476320 | None:intergenic | 20.0% |
| !!! | CATCAATTTCATACTTATTT+TGG | + | Chr1:476277-476296 | None:intergenic | 20.0% |
| !!! | CTTCAATTCAATTTGTTTTA+GGG | - | Chr1:474692-474711 | MsG0180000027.01.T01:intron | 20.0% |
| !!! | TATTCAAGTTTTTCCATTAA+TGG | + | Chr1:476302-476321 | None:intergenic | 20.0% |
| !!! | TCTTCAATTCAATTTGTTTT+AGG | - | Chr1:474691-474710 | MsG0180000027.01.T01:intron | 20.0% |
| !!! | TTTGATGATATTATCAATCA+AGG | - | Chr1:475280-475299 | MsG0180000027.01.T01:intron | 20.0% |
| ! | AAATATCTTTATGCACATCA+AGG | + | Chr1:475546-475565 | None:intergenic | 25.0% |
| ! | AAGACACTATAAAATCGATA+AGG | + | Chr1:473639-473658 | None:intergenic | 25.0% |
| ! | ACTAAACATGTACTTCAATA+TGG | - | Chr1:476001-476020 | MsG0180000027.01.T01:intron | 25.0% |
| ! | ATATTCAGGAAATCACTTAA+AGG | - | Chr1:476226-476245 | MsG0180000027.01.T01:intron | 25.0% |
| ! | GATGTGCATAAAGATATTTA+TGG | - | Chr1:475547-475566 | MsG0180000027.01.T01:CDS | 25.0% |
| ! | GCAGGGAAAATAATTAAATT+TGG | + | Chr1:475143-475162 | None:intergenic | 25.0% |
| ! | TAATATCATCAAATACCTCA+CGG | + | Chr1:475273-475292 | None:intergenic | 25.0% |
| ! | TATGGAATCACATGATAAAT+TGG | - | Chr1:476019-476038 | MsG0180000027.01.T01:intron | 25.0% |
| ! | TGAGTTTATATATCATCGTT+TGG | - | Chr1:475510-475529 | MsG0180000027.01.T01:CDS | 25.0% |
| ! | TTAAGTGATTTCCTGAATAT+AGG | + | Chr1:476226-476245 | None:intergenic | 25.0% |
| ! | TTCTATTCTTTCTTTGTCTA+TGG | + | Chr1:475605-475624 | None:intergenic | 25.0% |
| !! | AATAAACATATGATGGTGTA+AGG | + | Chr1:475980-475999 | None:intergenic | 25.0% |
| !! | ACTTTCATTTCTCTACATTT+TGG | - | Chr1:474468-474487 | MsG0180000027.01.T01:CDS | 25.0% |
| !! | ATAAACATATGATGGTGTAA+GGG | + | Chr1:475979-475998 | None:intergenic | 25.0% |
| !! | ATTGTTGTTGATACATAACA+TGG | - | Chr1:473926-473945 | MsG0180000027.01.T01:CDS | 25.0% |
| !! | TAATTATTTTCCCTGCTTAA+AGG | - | Chr1:475147-475166 | MsG0180000027.01.T01:intron | 25.0% |
| !! | TACTGATTGGAATTAGTATA+TGG | - | Chr1:475044-475063 | MsG0180000027.01.T01:intron | 25.0% |
| !!! | AGATTTAGTTTTTTTGCTTG+TGG | - | Chr1:474649-474668 | MsG0180000027.01.T01:CDS | 25.0% |
| !!! | GATTTAGTTTTTTTGCTTGT+GGG | - | Chr1:474650-474669 | MsG0180000027.01.T01:CDS | 25.0% |
| !!! | GTCTTTTTTTTTTTTTGTGG+TGG | - | Chr1:473654-473673 | MsG0180000027.01.T01:CDS | 25.0% |
| !!! | TACATTTTGGTATGTATGTT+TGG | - | Chr1:474481-474500 | MsG0180000027.01.T01:CDS | 25.0% |
| !!! | TTCAAGTTTTTCCATTAATG+GGG | + | Chr1:476300-476319 | None:intergenic | 25.0% |
| AAGAACTATAAACCAAGACT+TGG | + | Chr1:474789-474808 | None:intergenic | 30.0% | |
| AAGTTGAAACTAGGTAAGAT+AGG | - | Chr1:475852-475871 | MsG0180000027.01.T01:intron | 30.0% | |
| ACTTTGATTAGGATTCTGAA+TGG | - | Chr1:474334-474353 | MsG0180000027.01.T01:CDS | 30.0% | |
| AGAGAAATGAAGTTGAAACT+AGG | - | Chr1:475843-475862 | MsG0180000027.01.T01:intron | 30.0% | |
| ATATAACATATGCAAGCTCT+AGG | + | Chr1:473693-473712 | None:intergenic | 30.0% | |
| ATATCATTATGCATTGCTTG+CGG | - | Chr1:474392-474411 | MsG0180000027.01.T01:CDS | 30.0% | |
| ATATTTATGGTGGCCTAATT+TGG | - | Chr1:475560-475579 | MsG0180000027.01.T01:CDS | 30.0% | |
| ATCACATGATAAATTGGAAG+AGG | - | Chr1:476025-476044 | MsG0180000027.01.T01:intron | 30.0% | |
| CACACATAAAACTACATTGT+AGG | + | Chr1:473527-473546 | None:intergenic | 30.0% | |
| CATTTCTCTAAATATCTCCA+AGG | + | Chr1:475832-475851 | None:intergenic | 30.0% | |
| CATTTGTATACCTTTAAGCA+GGG | + | Chr1:475160-475179 | None:intergenic | 30.0% | |
| CTTTGATTAGGATTCTGAAT+GGG | - | Chr1:474335-474354 | MsG0180000027.01.T01:CDS | 30.0% | |
| GTAAGATGATGTTACATGAT+CGG | + | Chr1:476196-476215 | None:intergenic | 30.0% | |
| GTGCATAAAGATATTTATGG+TGG | - | Chr1:475550-475569 | MsG0180000027.01.T01:CDS | 30.0% | |
| TAAGATGATGTTACATGATC+GGG | + | Chr1:476195-476214 | None:intergenic | 30.0% | |
| TACTAATTCCAATCAGTAGA+AGG | + | Chr1:475042-475061 | None:intergenic | 30.0% | |
| TATACAAATGGATGATGCAA+CGG | - | Chr1:475170-475189 | MsG0180000027.01.T01:intron | 30.0% | |
| TATCATCGTTTGGTTACAAA+TGG | - | Chr1:475520-475539 | MsG0180000027.01.T01:CDS | 30.0% | |
| TCATGTAACATCATCTTACA+TGG | - | Chr1:476197-476216 | MsG0180000027.01.T01:intron | 30.0% | |
| TCTTTATGCTACAAAGCTTA+GGG | - | Chr1:474805-474824 | MsG0180000027.01.T01:intron | 30.0% | |
| TGTAGAGAAATGAAAGTGAA+AGG | + | Chr1:474465-474484 | None:intergenic | 30.0% | |
| TTACATGGATACCTATATTC+AGG | - | Chr1:476212-476231 | MsG0180000027.01.T01:intron | 30.0% | |
| TTAGATTCTTTGGTGAAAGT+TGG | - | Chr1:476104-476123 | MsG0180000027.01.T01:intron | 30.0% | |
| TTCTTTATGCTACAAAGCTT+AGG | - | Chr1:474804-474823 | MsG0180000027.01.T01:intron | 30.0% | |
| ! | ATATAAACTCAGCTTGCTTA+AGG | + | Chr1:475501-475520 | None:intergenic | 30.0% |
| ! | CATGATTGATTCTGCAAATT+CGG | + | Chr1:475928-475947 | None:intergenic | 30.0% |
| ! | TAAACATATGATGGTGTAAG+GGG | + | Chr1:475978-475997 | None:intergenic | 30.0% |
| ! | TAATTTTCCTTCTCAAACTC+TGG | + | Chr1:476328-476347 | None:intergenic | 30.0% |
| ! | TTGATTTTGCTCTTTCTACT+AGG | - | Chr1:475206-475225 | MsG0180000027.01.T01:intron | 30.0% |
| !! | AAGAAAGAATAGAAGCATTG+AGG | - | Chr1:475611-475630 | MsG0180000027.01.T01:CDS | 30.0% |
| !! | AGGGAGGAATTTAAGTTTTA+GGG | - | Chr1:474824-474843 | MsG0180000027.01.T01:intron | 30.0% |
| !! | GAAAGTTGGTAAAATTGACA+AGG | - | Chr1:476118-476137 | MsG0180000027.01.T01:intron | 30.0% |
| !! | TAGGGAGGAATTTAAGTTTT+AGG | - | Chr1:474823-474842 | MsG0180000027.01.T01:intron | 30.0% |
| !!! | CATGCTTTCTTTTTCAGAAT+TGG | - | Chr1:474886-474905 | MsG0180000027.01.T01:intron | 30.0% |
| !!! | GGAATTTAAGTTTTAGGGAA+AGG | - | Chr1:474829-474848 | MsG0180000027.01.T01:intron | 30.0% |
| AAATATCGTTGTTGTCAGGA+AGG | + | Chr1:474165-474184 | None:intergenic | 35.0% | |
| AACCTTGAACAGAAGAACTA+AGG | + | Chr1:475351-475370 | None:intergenic | 35.0% | |
| AATACATCCAGAGTTTGAGA+AGG | - | Chr1:476318-476337 | MsG0180000027.01.T01:intron | 35.0% | |
| AATATCTCCAAGGACTTCAT+AGG | + | Chr1:475822-475841 | None:intergenic | 35.0% | |
| ATCCACCCAATTGAATCATT+CGG | + | Chr1:475402-475421 | None:intergenic | 35.0% | |
| ATGTGTTTCCTTCTACTGAT+TGG | - | Chr1:475031-475050 | MsG0180000027.01.T01:intron | 35.0% | |
| ATTCCACCGAATGATTCAAT+TGG | - | Chr1:475393-475412 | MsG0180000027.01.T01:intron | 35.0% | |
| CACAATCAATATATGGAACG+TGG | + | Chr1:475323-475342 | None:intergenic | 35.0% | |
| CCATTTGTATACCTTTAAGC+AGG | + | Chr1:475161-475180 | None:intergenic | 35.0% | |
| CTGATGTAAGACTAGCAATA+AGG | + | Chr1:474922-474941 | None:intergenic | 35.0% | |
| GCTTTCAAACTGCAAAAGTT+TGG | + | Chr1:475743-475762 | None:intergenic | 35.0% | |
| GGTAAGCCACAATCAATATA+TGG | + | Chr1:475330-475349 | None:intergenic | 35.0% | |
| GGTGTGTGTAAGAAATATGA+AGG | - | Chr1:473801-473820 | MsG0180000027.01.T01:CDS | 35.0% | |
| GTTATGACTGAAGTTGAAAC+AGG | + | Chr1:473975-473994 | None:intergenic | 35.0% | |
| TGAAATTGATGCCCCATTAA+TGG | - | Chr1:476286-476305 | MsG0180000027.01.T01:intron | 35.0% | |
| TGGGAACAAATTACAGCTTA+AGG | + | Chr1:475123-475142 | None:intergenic | 35.0% | |
| TTCCACCGAATGATTCAATT+GGG | - | Chr1:475394-475413 | MsG0180000027.01.T01:intron | 35.0% | |
| TTCTTCTGTTCAAGGTTGTT+TGG | - | Chr1:475354-475373 | MsG0180000027.01.T01:intron | 35.0% | |
| ! | ACAGGCTTTTGTGTACAAAA+TGG | - | Chr1:475773-475792 | MsG0180000027.01.T01:intron | 35.0% |
| ! | ATGACAGATTTTGTCAAGAG+TGG | - | Chr1:475945-475964 | MsG0180000027.01.T01:intron | 35.0% |
| ! | CACGTTCCATATATTGATTG+TGG | - | Chr1:475321-475340 | MsG0180000027.01.T01:intron | 35.0% |
| ! | CCTGCTTAAAGGTATACAAA+TGG | - | Chr1:475158-475177 | MsG0180000027.01.T01:intron | 35.0% |
| ! | TACCTTAGTTCTTCTGTTCA+AGG | - | Chr1:475346-475365 | MsG0180000027.01.T01:intron | 35.0% |
| ! | TTTTGCTTGTGGGAATTGAT+TGG | - | Chr1:474660-474679 | MsG0180000027.01.T01:CDS | 35.0% |
| !! | GCTTATAAGAGCTTTGAAGA+GGG | + | Chr1:475452-475471 | None:intergenic | 35.0% |
| !! | TGGTATTGATGAAAACCAAG+AGG | - | Chr1:475651-475670 | MsG0180000027.01.T01:intron | 35.0% |
| !!! | CTCACCTCTAGAATCAATTT+TGG | - | Chr1:474596-474615 | MsG0180000027.01.T01:CDS | 35.0% |
| !!! | CTCTAGAATCAATTTTGGCT+CGG | - | Chr1:474601-474620 | MsG0180000027.01.T01:CDS | 35.0% |
| AAAGCTCTTATAAGCGAACC+AGG | - | Chr1:475457-475476 | MsG0180000027.01.T01:CDS | 40.0% | |
| AACGCATTGAAGAGAGGTTA+GGG | + | Chr1:474010-474029 | None:intergenic | 40.0% | |
| AAGCTCTTATAAGCGAACCA+GGG | - | Chr1:475458-475477 | MsG0180000027.01.T01:CDS | 40.0% | |
| AATTTGGCTGCATAGCTATC+AGG | - | Chr1:475576-475595 | MsG0180000027.01.T01:CDS | 40.0% | |
| ACTAGGCTAGCAGATTACAT+GGG | - | Chr1:475223-475242 | MsG0180000027.01.T01:intron | 40.0% | |
| ATGTTTCGTGATGCAAGCAT+TGG | - | Chr1:476161-476180 | MsG0180000027.01.T01:intron | 40.0% | |
| CAAAATGGAAGTCCACTCTA+AGG | - | Chr1:475788-475807 | MsG0180000027.01.T01:intron | 40.0% | |
| CGGAAAATATCGTTGTTGTC+AGG | + | Chr1:474169-474188 | None:intergenic | 40.0% | |
| GAATTATGCAAGCTAAGACG+CGG | + | Chr1:475430-475449 | None:intergenic | 40.0% | |
| GATAGCTATGCAGCCAAATT+AGG | + | Chr1:475576-475595 | None:intergenic | 40.0% | |
| GTTGAAACAGGAAGAAGAAG+TGG | + | Chr1:473963-473982 | None:intergenic | 40.0% | |
| TAATCAACTAATACCCGACC+AGG | + | Chr1:475009-475028 | None:intergenic | 40.0% | |
| TACTAGGCTAGCAGATTACA+TGG | - | Chr1:475222-475241 | MsG0180000027.01.T01:intron | 40.0% | |
| TATTAGGATGGCATTTCTCG+AGG | + | Chr1:476064-476083 | None:intergenic | 40.0% | |
| TGAAGAGAGGTTAGGGTTTA+AGG | + | Chr1:474003-474022 | None:intergenic | 40.0% | |
| TGCTTGCATCACGAAACATT+TGG | + | Chr1:476160-476179 | None:intergenic | 40.0% | |
| TGTACACAAAAGCCTGTGAT+GGG | + | Chr1:475770-475789 | None:intergenic | 40.0% | |
| TTATGCTACAAAGCTTAGGG+AGG | - | Chr1:474808-474827 | MsG0180000027.01.T01:intron | 40.0% | |
| TTGTACACAAAAGCCTGTGA+TGG | + | Chr1:475771-475790 | None:intergenic | 40.0% | |
| TTTGCGTGAGTGAGTTTAGA+TGG | + | Chr1:473568-473587 | None:intergenic | 40.0% | |
| ! | AACGATATTTTCCGTTTCGC+AGG | - | Chr1:474175-474194 | MsG0180000027.01.T01:intron | 40.0% |
| ! | AAGATTGCGGAAAAGTGTGA+AGG | + | Chr1:474036-474055 | None:intergenic | 40.0% |
| ! | ACGATATTTTCCGTTTCGCA+GGG | - | Chr1:474176-474195 | MsG0180000027.01.T01:intron | 40.0% |
| ! | CGAGCCAAAATTGATTCTAG+AGG | + | Chr1:474603-474622 | None:intergenic | 40.0% |
| ! | CTAGAGGTGAGACTTGATTT+TGG | + | Chr1:474587-474606 | None:intergenic | 40.0% |
| ! | GTTGGTAAAATTGACAAGGC+TGG | - | Chr1:476122-476141 | MsG0180000027.01.T01:intron | 40.0% |
| ! | TCAGCTTATCTCAGTTGGTA+TGG | + | Chr1:473728-473747 | None:intergenic | 40.0% |
| ! | TCTATGTTTGGTTCCACCTT+TGG | + | Chr1:474632-474651 | None:intergenic | 40.0% |
| !! | CGCTTATAAGAGCTTTGAAG+AGG | + | Chr1:475453-475472 | None:intergenic | 40.0% |
| !! | TACTGCTTTGAAAAGTTCCC+TGG | + | Chr1:475478-475497 | None:intergenic | 40.0% |
| !! | TTGGCTTTGTAAGGAGTTAC+CGG | - | Chr1:474297-474316 | MsG0180000027.01.T01:CDS | 40.0% |
| AACTCCTTCACATCAACCTC+CGG | + | Chr1:474238-474257 | None:intergenic | 45.0% | |
| AATGGATGATGCAACGGAGT+TGG | - | Chr1:475176-475195 | MsG0180000027.01.T01:intron | 45.0% | |
| AGATCGATACTAGCACCTCT+TGG | + | Chr1:475669-475688 | None:intergenic | 45.0% | |
| AGGAGGCTGAAGAAAACAAG+CGG | - | Chr1:474203-474222 | MsG0180000027.01.T01:CDS | 45.0% | |
| AGGTAGAACGCATTGAAGAG+AGG | + | Chr1:474016-474035 | None:intergenic | 45.0% | |
| ATAAGGCGGGGACTTTGATT+AGG | - | Chr1:474323-474342 | MsG0180000027.01.T01:CDS | 45.0% | |
| CACCCAATTGAATCATTCGG+TGG | + | Chr1:475399-475418 | None:intergenic | 45.0% | |
| CACCGAATGATTCAATTGGG+TGG | - | Chr1:475397-475416 | MsG0180000027.01.T01:intron | 45.0% | |
| CAGCTGTTGAAACCAAGTCT+TGG | - | Chr1:474774-474793 | MsG0180000027.01.T01:intron | 45.0% | |
| CCAACTGAGATAAGCTGACA+AGG | - | Chr1:473730-473749 | MsG0180000027.01.T01:CDS | 45.0% | |
| CCCAAGACAGCAAACAAGAA+GGG | - | Chr1:473837-473856 | MsG0180000027.01.T01:CDS | 45.0% | |
| CCTTGTCAGCTTATCTCAGT+TGG | + | Chr1:473733-473752 | None:intergenic | 45.0% | |
| CTTACAAAGCCAAGCAACTC+TGG | + | Chr1:474290-474309 | None:intergenic | 45.0% | |
| GAACGCATTGAAGAGAGGTT+AGG | + | Chr1:474011-474030 | None:intergenic | 45.0% | |
| GTACACAAAAGCCTGTGATG+GGG | + | Chr1:475769-475788 | None:intergenic | 45.0% | |
| TACACAAAAGCCTGTGATGG+GGG | + | Chr1:475768-475787 | None:intergenic | 45.0% | |
| TAGCTAGCTAACCTGCGAAT+GGG | - | Chr1:473883-473902 | MsG0180000027.01.T01:CDS | 45.0% | |
| TAGGCATACCAACCTTAGAG+TGG | + | Chr1:475803-475822 | None:intergenic | 45.0% | |
| TGATGTGAAGGAGTTGAGTG+AGG | - | Chr1:474243-474262 | MsG0180000027.01.T01:CDS | 45.0% | |
| TGGAGGAAGCAGAGAAAACT+TGG | - | Chr1:475716-475735 | MsG0180000027.01.T01:intron | 45.0% | |
| TGGTATGCCTATGAAGTCCT+TGG | - | Chr1:475812-475831 | MsG0180000027.01.T01:intron | 45.0% | |
| TGTTGTCAGGAAGGTCTTGA+TGG | + | Chr1:474156-474175 | None:intergenic | 45.0% | |
| TTAGGATTCTGAATGGGCAG+AGG | - | Chr1:474341-474360 | MsG0180000027.01.T01:CDS | 45.0% | |
| TTTGTCAAGTTCCCATTCGC+AGG | + | Chr1:473897-473916 | None:intergenic | 45.0% | |
| ! | AATCAGTCTTTTGTCCCTCC+TGG | - | Chr1:474988-475007 | MsG0180000027.01.T01:intron | 45.0% |
| ! | ATACTGACTGACCCTAAACG+CGG | + | Chr1:474434-474453 | None:intergenic | 45.0% |
| ! | ATGTTTGGTTCCACCTTTGG+AGG | + | Chr1:474629-474648 | None:intergenic | 45.0% |
| ! | CAAGACTTGGTTTCAACAGC+TGG | + | Chr1:474776-474795 | None:intergenic | 45.0% |
| ! | CGATATTTTCCGTTTCGCAG+GGG | - | Chr1:474177-474196 | MsG0180000027.01.T01:intron | 45.0% |
| !! | ACCCTTCTTGTTTGCTGTCT+TGG | + | Chr1:473841-473860 | None:intergenic | 45.0% |
| !! | AGGTGCTAGTATCGATCTTG+AGG | - | Chr1:475671-475690 | MsG0180000027.01.T01:intron | 45.0% |
| !! | ATGGAAGTCCACTCTAAGGT+TGG | - | Chr1:475792-475811 | MsG0180000027.01.T01:intron | 45.0% |
| !! | CAAGTTTACAAAGTGCCGTG+AGG | - | Chr1:475255-475274 | MsG0180000027.01.T01:intron | 45.0% |
| !! | CAGAGTTGCTTGGCTTTGTA+AGG | - | Chr1:474288-474307 | MsG0180000027.01.T01:CDS | 45.0% |
| !! | CCCTTCTTGTTTGCTGTCTT+GGG | + | Chr1:473840-473859 | None:intergenic | 45.0% |
| !! | GGTGCTAGTATCGATCTTGA+GGG | - | Chr1:475672-475691 | MsG0180000027.01.T01:intron | 45.0% |
| !! | TGATGCAACGGAGTTGGTAT+CGG | - | Chr1:475182-475201 | MsG0180000027.01.T01:intron | 45.0% |
| ATATGGAACGTGGACTCGCT+GGG | + | Chr1:475313-475332 | None:intergenic | 50.0% | |
| CAACTAATACCCGACCAGGA+GGG | + | Chr1:475005-475024 | None:intergenic | 50.0% | |
| CGAGAACGAAACCGCGTTTA+GGG | - | Chr1:474420-474439 | MsG0180000027.01.T01:CDS | 50.0% | |
| CTAGCTAGCTAACCTGCGAA+TGG | - | Chr1:473882-473901 | MsG0180000027.01.T01:CDS | 50.0% | |
| GAGTGGAGAGGGTAAGATTG+CGG | + | Chr1:474049-474068 | None:intergenic | 50.0% | |
| GCCCAAGACAGCAAACAAGA+AGG | - | Chr1:473836-473855 | MsG0180000027.01.T01:CDS | 50.0% | |
| GCGTGAGTGAGTTTAGATGG+TGG | + | Chr1:473565-473584 | None:intergenic | 50.0% | |
| TAAGGAGTTACCGGCGCATA+AGG | - | Chr1:474306-474325 | MsG0180000027.01.T01:CDS | 50.0% | |
| TATATGGAACGTGGACTCGC+TGG | + | Chr1:475314-475333 | None:intergenic | 50.0% | |
| TCAACTAATACCCGACCAGG+AGG | + | Chr1:475006-475025 | None:intergenic | 50.0% | |
| TTCTGAATGGGCAGAGGAAG+TGG | - | Chr1:474347-474366 | MsG0180000027.01.T01:CDS | 50.0% | |
| TTGAAAGCAACCCCCATCAC+AGG | - | Chr1:475755-475774 | MsG0180000027.01.T01:intron | 50.0% | |
| ! | AGTCTTTTGTCCCTCCTGGT+CGG | - | Chr1:474992-475011 | MsG0180000027.01.T01:intron | 50.0% |
| ! | TATTTTCCGTTTCGCAGGGG+TGG | - | Chr1:474180-474199 | MsG0180000027.01.T01:intron | 50.0% |
| ATGGGCAGAGGAAGTGGTTG+AGG | - | Chr1:474353-474372 | MsG0180000027.01.T01:CDS | 55.0% | |
| GAAGGAGTTGAGTGAGGTGC+CGG | - | Chr1:474249-474268 | MsG0180000027.01.T01:CDS | 55.0% | |
| GAGGTAGGTGAGAGTGGAGA+GGG | + | Chr1:474060-474079 | None:intergenic | 55.0% | |
| GCGAGAACGAAACCGCGTTT+AGG | - | Chr1:474419-474438 | MsG0180000027.01.T01:CDS | 55.0% | |
| TATGCAAGCTAAGACGCGGC+TGG | + | Chr1:475426-475445 | None:intergenic | 55.0% | |
| TTCACATCAACCTCCGGACG+CGG | + | Chr1:474232-474251 | None:intergenic | 55.0% | |
| ! | GCGTTGGCAACGTCGAACAA+TGG | - | Chr1:474125-474144 | MsG0180000027.01.T01:intron | 55.0% |
| ! | GTCTTTTGTCCCTCCTGGTC+GGG | - | Chr1:474993-475012 | MsG0180000027.01.T01:intron | 55.0% |
| !!! | TTTTGGCTCGGCTCCTCCAA+AGG | - | Chr1:474613-474632 | MsG0180000027.01.T01:CDS | 55.0% |
| AAAGTCCCCGCCTTATGCGC+CGG | + | Chr1:474319-474338 | None:intergenic | 60.0% | |
| ACGTGGACTCGCTGGGAACA+CGG | + | Chr1:475306-475325 | None:intergenic | 60.0% | |
| ACGTTGCCAACGCAGTTGCG+GGG | + | Chr1:474118-474137 | None:intergenic | 60.0% | |
| AGGCAAGAGATGCTACGCGC+TGG | - | Chr1:475631-475650 | MsG0180000027.01.T01:CDS | 60.0% | |
| AGTTACCGGCGCATAAGGCG+GGG | - | Chr1:474311-474330 | MsG0180000027.01.T01:CDS | 60.0% | |
| CAACGCAGTTGCGGGGAAAG+TGG | + | Chr1:474111-474130 | None:intergenic | 60.0% | |
| CACTTTCCCCGCAACTGCGT+TGG | - | Chr1:474109-474128 | MsG0180000027.01.T01:intron | 60.0% | |
| CGACGTTGCCAACGCAGTTG+CGG | + | Chr1:474120-474139 | None:intergenic | 60.0% | |
| CGAGGTAGGTGAGAGTGGAG+AGG | + | Chr1:474061-474080 | None:intergenic | 60.0% | |
| GACGTTGCCAACGCAGTTGC+GGG | + | Chr1:474119-474138 | None:intergenic | 60.0% | |
| GAGTTACCGGCGCATAAGGC+GGG | - | Chr1:474310-474329 | MsG0180000027.01.T01:CDS | 60.0% | |
| GATCTTGAGGGCCTGCGCAA+GGG | - | Chr1:475684-475703 | MsG0180000027.01.T01:intron | 60.0% | |
| GCAGAGGAAGTGGTTGAGGC+AGG | - | Chr1:474357-474376 | MsG0180000027.01.T01:CDS | 60.0% | |
| GGAGTTACCGGCGCATAAGG+CGG | - | Chr1:474309-474328 | MsG0180000027.01.T01:CDS | 60.0% | |
| TTTCCGTTTCGCAGGGGTGG+AGG | - | Chr1:474183-474202 | MsG0180000027.01.T01:intron | 60.0% | |
| ! | AAAGTGGCGGAGGTGGAGGA+GGG | + | Chr1:474095-474114 | None:intergenic | 60.0% |
| !! | GCGTCCGGAGGTTGATGTGA+AGG | - | Chr1:474231-474250 | MsG0180000027.01.T01:CDS | 60.0% |
| !! | TGAGTGAGGTGCCGGAGCTA+TGG | - | Chr1:474257-474276 | MsG0180000027.01.T01:CDS | 60.0% |
| AAACAAGCGGCTGCCGCGTC+CGG | - | Chr1:474216-474235 | MsG0180000027.01.T01:CDS | 65.0% | |
| AGTTGCGGGGAAAGTGGCGG+AGG | + | Chr1:474105-474124 | None:intergenic | 65.0% | |
| CCTCCTCCACCCCTGCGAAA+CGG | + | Chr1:474189-474208 | None:intergenic | 65.0% | |
| CGATCTTGAGGGCCTGCGCA+AGG | - | Chr1:475683-475702 | MsG0180000027.01.T01:intron | 65.0% | |
| CGCAGTTGCGGGGAAAGTGG+CGG | + | Chr1:474108-474127 | None:intergenic | 65.0% | |
| CTGGACCTCCGCCATAGCTC+CGG | + | Chr1:474271-474290 | None:intergenic | 65.0% | |
| GAGGTGGAGGAGGGAAGGGA+GGG | + | Chr1:474086-474105 | None:intergenic | 65.0% | |
| GGCGGAGGTCCAGAGTTGCT+TGG | - | Chr1:474278-474297 | MsG0180000027.01.T01:CDS | 65.0% | |
| GGGTGCGAGGTAGGTGAGAG+TGG | + | Chr1:474066-474085 | None:intergenic | 65.0% | |
| TTGAGGGCCTGCGCAAGGGA+GGG | - | Chr1:475688-475707 | MsG0180000027.01.T01:intron | 65.0% | |
| ! | GAAAGTGGCGGAGGTGGAGG+AGG | + | Chr1:474096-474115 | None:intergenic | 65.0% |
| ! | TGGCTCGGCTCCTCCAAAGG+TGG | - | Chr1:474616-474635 | MsG0180000027.01.T01:CDS | 65.0% |
| !! | GTGAGGTGCCGGAGCTATGG+CGG | - | Chr1:474260-474279 | MsG0180000027.01.T01:CDS | 65.0% |
| CACCTCACCCTCCCTTGCGC+AGG | + | Chr1:475698-475717 | None:intergenic | 70.0% | |
| CCGTTTCGCAGGGGTGGAGG+AGG | - | Chr1:474186-474205 | MsG0180000027.01.T01:intron | 70.0% | |
| CGCAAGGGAGGGTGAGGTGG+AGG | - | Chr1:475699-475718 | MsG0180000027.01.T01:intron | 70.0% | |
| CTGCGCAAGGGAGGGTGAGG+TGG | - | Chr1:475696-475715 | MsG0180000027.01.T01:intron | 70.0% | |
| CTTGAGGGCCTGCGCAAGGG+AGG | - | Chr1:475687-475706 | MsG0180000027.01.T01:intron | 70.0% | |
| GGAGGTGGAGGAGGGAAGGG+AGG | + | Chr1:474087-474106 | None:intergenic | 70.0% | |
| GGCGGAGGTGGAGGAGGGAA+GGG | + | Chr1:474090-474109 | None:intergenic | 70.0% | |
| TGGCGGAGGTGGAGGAGGGA+AGG | + | Chr1:474091-474110 | None:intergenic | 70.0% | |
| ! | AGGAGGGAAGGGAGGGTGCG+AGG | + | Chr1:474079-474098 | None:intergenic | 70.0% |
| ! | GGGAAGGGAGGGTGCGAGGT+AGG | + | Chr1:474075-474094 | None:intergenic | 70.0% |
| ! | GGGGAAAGTGGCGGAGGTGG+AGG | + | Chr1:474099-474118 | None:intergenic | 70.0% |
| ! | TGCGGGGAAAGTGGCGGAGG+TGG | + | Chr1:474102-474121 | None:intergenic | 70.0% |
| !! | AGGTGCCGGAGCTATGGCGG+AGG | - | Chr1:474263-474282 | MsG0180000027.01.T01:CDS | 70.0% |
| GGCCTGCGCAAGGGAGGGTG+AGG | - | Chr1:475693-475712 | MsG0180000027.01.T01:intron | 75.0% | |
| ! | CAAGCGGCTGCCGCGTCCGG+AGG | - | Chr1:474219-474238 | MsG0180000027.01.T01:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 473502 | 476361 | 473502 | ID=MsG0180000027.01;Name=MsG0180000027.01 |
| Chr1 | mRNA | 473502 | 476361 | 473502 | ID=MsG0180000027.01.T01;Parent=MsG0180000027.01;Name=MsG0180000027.01.T01;_AED=0.32;_eAED=0.32;_QI=0|0.33|0|0.75|1|1|4|0|449 |
| Chr1 | exon | 476346 | 476361 | 476346 | ID=MsG0180000027.01.T01:exon:7825;Parent=MsG0180000027.01.T01 |
| Chr1 | exon | 475422 | 475666 | 475422 | ID=MsG0180000027.01.T01:exon:7826;Parent=MsG0180000027.01.T01 |
| Chr1 | exon | 474191 | 474694 | 474191 | ID=MsG0180000027.01.T01:exon:7827;Parent=MsG0180000027.01.T01 |
| Chr1 | exon | 473502 | 474086 | 473502 | ID=MsG0180000027.01.T01:exon:7828;Parent=MsG0180000027.01.T01 |
| Chr1 | CDS | 476346 | 476361 | 476346 | ID=MsG0180000027.01.T01:cds;Parent=MsG0180000027.01.T01 |
| Chr1 | CDS | 475422 | 475666 | 475422 | ID=MsG0180000027.01.T01:cds;Parent=MsG0180000027.01.T01 |
| Chr1 | CDS | 474191 | 474694 | 474191 | ID=MsG0180000027.01.T01:cds;Parent=MsG0180000027.01.T01 |
| Chr1 | CDS | 473502 | 474086 | 473502 | ID=MsG0180000027.01.T01:cds;Parent=MsG0180000027.01.T01 |
| Gene Sequence |
| Protein sequence |
