AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580028111.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028111.01.T01 MTR_5g068860 96.146 493 19 0 1 493 19 511 0.0 949
MsG0580028111.01.T01 MTR_1g115415 51.659 422 198 2 67 484 49 468 2.53e-158 459
MsG0580028111.01.T01 MTR_8g105560 43.128 422 181 4 67 484 27 393 6.98e-115 350
MsG0580028111.01.T01 MTR_4g070060 27.606 355 249 4 118 466 235 587 1.60e-36 143
MsG0580028111.01.T01 MTR_4g084630 23.226 310 200 3 158 465 46 319 1.78e-34 132
MsG0580028111.01.T01 MTR_4g084630 23.182 220 160 3 123 333 43 262 2.04e-17 84.0
MsG0580028111.01.T01 MTR_2g034600 27.740 292 201 6 188 476 210 494 2.96e-30 123
MsG0580028111.01.T01 MTR_2g034600 21.986 282 171 7 121 357 211 488 1.04e-13 73.6
MsG0580028111.01.T01 MTR_2g034600 27.740 292 201 6 188 476 275 559 3.82e-30 124
MsG0580028111.01.T01 MTR_2g034600 21.986 282 171 7 121 357 276 553 8.38e-14 74.3
MsG0580028111.01.T01 MTR_2g034600 27.740 292 201 6 188 476 271 555 4.53e-30 124
MsG0580028111.01.T01 MTR_2g034600 21.986 282 171 7 121 357 272 549 9.42e-14 73.9
MsG0580028111.01.T01 MTR_5g094610 25.890 309 217 9 175 474 176 481 1.05e-25 110
MsG0580028111.01.T01 MTR_5g094610 24.153 236 166 5 116 343 221 451 4.71e-13 71.6
MsG0580028111.01.T01 MTR_6g003960 24.924 329 241 6 138 464 263 587 3.95e-24 106
MsG0580028111.01.T01 MTR_2g049780 26.136 264 154 7 205 466 82 306 1.55e-19 89.7
MsG0580028111.01.T01 MTR_2g067230 21.942 278 170 5 193 469 73 304 4.03e-15 77.0
MsG0580028111.01.T01 MTR_5g041630 25.092 271 159 6 193 461 61 289 7.44e-15 75.9
MsG0580028111.01.T01 MTR_3g092710 22.495 489 313 18 36 464 9 491 2.07e-14 75.9
MsG0580028111.01.T01 MTR_7g081270 25.547 274 166 9 209 464 26 279 4.18e-11 64.3
MsG0580028111.01.T01 MTR_2g438020 21.154 364 261 11 115 468 72 419 4.96e-11 65.5
MsG0580028111.01.T01 MTR_8g081000 22.951 244 155 5 229 440 93 335 7.34e-11 64.3
MsG0580028111.01.T01 MTR_8g081000 22.951 244 155 5 229 440 93 335 8.23e-11 64.3
MsG0580028111.01.T01 MTR_8g081000 22.951 244 155 5 229 440 93 335 9.24e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028111.01.T01 AT4G02990 78.230 418 90 1 76 492 102 519 0.0 677
MsG0580028111.01.T01 AT4G02990 78.230 418 90 1 76 492 102 519 0.0 677
MsG0580028111.01.T01 AT2G44020 48.694 421 210 2 70 486 57 475 7.36e-148 433
MsG0580028111.01.T01 AT2G21710 26.611 357 256 3 117 468 241 596 5.48e-41 156
MsG0580028111.01.T01 AT2G21710 24.615 260 184 4 74 322 264 522 3.84e-18 88.2
MsG0580028111.01.T01 AT4G38160 24.638 276 205 3 201 473 54 329 8.22e-33 128
MsG0580028111.01.T01 AT4G38160 21.145 227 166 5 119 333 39 264 4.51e-16 79.7
MsG0580028111.01.T01 AT4G38160 24.638 276 205 3 201 473 54 329 8.22e-33 128
MsG0580028111.01.T01 AT4G38160 21.145 227 166 5 119 333 39 264 4.51e-16 79.7
MsG0580028111.01.T01 AT4G38160 24.638 276 205 3 201 473 54 329 1.05e-32 128
MsG0580028111.01.T01 AT4G38160 21.145 227 166 5 119 333 39 264 3.41e-16 80.5
MsG0580028111.01.T01 AT4G38160 24.638 276 205 3 201 473 54 329 1.55e-32 128
MsG0580028111.01.T01 AT4G38160 21.145 227 166 5 119 333 39 264 5.19e-16 80.1
MsG0580028111.01.T01 AT2G21710 24.290 317 234 3 117 428 241 556 7.55e-28 117
MsG0580028111.01.T01 AT2G21710 24.306 288 202 6 74 346 264 550 3.02e-18 88.2
MsG0580028111.01.T01 AT2G21710 24.444 315 232 3 117 426 241 554 1.41e-27 116
MsG0580028111.01.T01 AT2G21710 24.710 259 183 4 75 322 265 522 2.86e-18 88.2
MsG0580028111.01.T01 AT4G14605 29.057 265 178 7 204 465 211 468 5.89e-27 114
MsG0580028111.01.T01 AT4G14605 29.057 265 178 7 204 465 211 468 5.89e-27 114
MsG0580028111.01.T01 AT1G78930 23.404 329 247 5 138 464 249 574 2.17e-24 107
MsG0580028111.01.T01 AT5G55580 23.856 306 222 7 146 446 38 337 5.38e-22 98.2
MsG0580028111.01.T01 AT5G55580 24.359 234 166 5 114 340 106 335 1.08e-13 73.2
MsG0580028111.01.T01 AT5G55580 24.332 337 241 9 146 474 144 474 2.04e-21 97.4
MsG0580028111.01.T01 AT5G55580 24.359 234 166 5 114 340 212 441 2.23e-13 72.8
MsG0580028111.01.T01 AT2G34620 26.625 323 191 7 148 466 12 292 3.65e-19 88.6
MsG0580028111.01.T01 AT1G61970 25.281 356 247 9 130 476 61 406 7.62e-17 83.2
MsG0580028111.01.T01 AT1G61970 25.281 356 247 9 130 476 61 406 7.62e-17 83.2
MsG0580028111.01.T01 AT1G61970 25.281 356 247 9 130 476 61 406 7.62e-17 83.2
MsG0580028111.01.T01 AT1G61970 25.281 356 247 9 130 476 61 406 7.62e-17 83.2
MsG0580028111.01.T01 AT1G61970 25.281 356 247 9 130 476 61 406 7.62e-17 83.2
MsG0580028111.01.T01 AT1G61970 25.281 356 247 9 130 476 61 406 7.62e-17 83.2
MsG0580028111.01.T01 AT1G61970 25.281 356 247 9 130 476 61 406 7.62e-17 83.2
MsG0580028111.01.T01 AT5G55580 23.832 214 155 5 154 363 185 394 1.48e-14 75.9
MsG0580028111.01.T01 AT5G55580 23.735 257 186 6 146 398 144 394 3.15e-14 74.7
MsG0580028111.01.T01 AT2G03050 25.248 202 146 5 268 466 72 271 2.16e-13 71.2
MsG0580028111.01.T01 AT3G18870 26.923 208 146 4 260 464 64 268 2.20e-13 70.9
MsG0580028111.01.T01 AT2G03050 25.248 202 146 5 268 466 71 270 2.28e-13 70.9
MsG0580028111.01.T01 AT1G62120 22.642 318 234 7 130 444 65 373 2.00e-12 69.7
MsG0580028111.01.T01 AT5G54180 23.397 312 223 9 164 469 192 493 3.48e-12 68.9
MsG0580028111.01.T01 AT1G61980 22.293 314 203 9 192 467 87 397 1.50e-11 66.6
MsG0580028111.01.T01 AT1G61980 22.293 314 203 9 192 467 87 397 1.50e-11 66.6
MsG0580028111.01.T01 AT1G61980 22.293 314 203 9 192 467 87 397 1.50e-11 66.6
MsG0580028111.01.T01 AT5G64950 23.016 252 187 4 192 440 74 321 4.70e-11 65.1

Find 124 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTAGATTCCCGGAGATTT+TGG 0.122651 5:-74751594 MsG0580028111.01.T01:CDS
AAGCTTCAATGTTCTGTTTC+TGG 0.146446 5:-74752235 MsG0580028111.01.T01:CDS
GCTTGATTACCTTGGTAAAT+TGG 0.181028 5:-74751864 MsG0580028111.01.T01:CDS
GAGACACAACCTTATATTCT+TGG 0.218625 5:-74751485 MsG0580028111.01.T01:CDS
TTCCCAGCATTCTTCACTTA+TGG 0.257292 5:-74751059 MsG0580028111.01.T01:CDS
AATTGCCATGTAATTGTATT+AGG 0.259846 5:-74752276 MsG0580028111.01.T01:CDS
GGAAAGGCCTTTGGAAGATT+TGG 0.281167 5:-74751087 MsG0580028111.01.T01:CDS
TTATATTCTTGGATTCGATT+TGG 0.301999 5:-74751474 MsG0580028111.01.T01:CDS
ACATCTGTTGCTTATTTGAT+TGG 0.305827 5:-74751653 MsG0580028111.01.T01:CDS
GATTTAGATGCTGAGGATTT+CGG 0.307294 5:-74751299 MsG0580028111.01.T01:CDS
AGCATTCTTCACTTATGGTT+TGG 0.313050 5:-74751054 MsG0580028111.01.T01:CDS
AACAACTATCCTCTTGTATT+GGG 0.341713 5:-74751917 MsG0580028111.01.T01:CDS
TAACAACTATCCTCTTGTAT+TGG 0.342324 5:-74751918 MsG0580028111.01.T01:CDS
AGTTTGAATCCCAACACTTC+AGG 0.346326 5:+74751692 None:intergenic
GCCGGTGGTCAAGTATCTTC+AGG 0.347359 5:-74751762 MsG0580028111.01.T01:CDS
TTCATAACATCAACCGTAAC+AGG 0.355753 5:+74751989 None:intergenic
TCTTCGAGGGATTCGACGTT+TGG 0.359263 5:+74751437 None:intergenic
GAATGACCAAATGTTAGAAT+TGG 0.365180 5:+74752328 None:intergenic
GGACTATGACACTATTGATA+TGG 0.372055 5:-74750928 MsG0580028111.01.T01:CDS
GTTGCTTATTTGATTGGAAT+TGG 0.373643 5:-74751647 MsG0580028111.01.T01:CDS
ACCTTGGTAAATTGGGAGTT+AGG 0.378790 5:-74751856 MsG0580028111.01.T01:CDS
CTTGATTACCTTGGTAAATT+GGG 0.382917 5:-74751863 MsG0580028111.01.T01:CDS
CTGGTACGACATATAGTTAT+AGG 0.391861 5:-74752216 MsG0580028111.01.T01:CDS
ATTGTTCCTGATGAGCTTGA+TGG 0.397129 5:-74752022 MsG0580028111.01.T01:CDS
AAATCGAATCCAAGAATATA+AGG 0.400009 5:+74751476 None:intergenic
ACCCGCATCCCCAAAATCTC+CGG 0.400611 5:+74751584 None:intergenic
CAAATGCCAATTCTAACATT+TGG 0.402055 5:-74752334 MsG0580028111.01.T01:CDS
AATCTGATTCATCGCTCCTT+TGG 0.406635 5:+74750858 None:intergenic
AGGTATCTTAACTAGATTCC+CGG 0.416131 5:-74751603 MsG0580028111.01.T01:CDS
TGGCGAAATTCAAAGGAAAC+GGG 0.417191 5:-74752155 MsG0580028111.01.T01:CDS
TGATATGGAAGAGATGGAAA+TGG 0.426007 5:-74750913 MsG0580028111.01.T01:CDS
TATGAGTTCTTGCGAGGAAT+CGG 0.426180 5:-74752046 MsG0580028111.01.T01:CDS
ATGTAGTGTCAAGAAGAATA+TGG 0.433633 5:-74751894 MsG0580028111.01.T01:CDS
GATTAAAGTGTTCTCTGGCT+TGG 0.440477 5:-74750989 MsG0580028111.01.T01:CDS
TCAAGACCATCAAGCTCATC+AGG 0.442352 5:+74752016 None:intergenic
TATCTGCAAGCTTCGGCTCT+AGG 0.443828 5:+74751348 None:intergenic
GTAATTGTATTAGGAAGATA+AGG 0.444282 5:-74752267 MsG0580028111.01.T01:CDS
GTGGAGTATCTGGAAAGCTT+GGG 0.446638 5:-74751539 MsG0580028111.01.T01:CDS
GCTCAGTATCCTGACATCAT+TGG 0.449340 5:-74751377 MsG0580028111.01.T01:CDS
GAAAGGATTAAAGTGTTCTC+TGG 0.449764 5:-74750994 MsG0580028111.01.T01:CDS
CATAACATGGTTACTAAGAA+AGG 0.450093 5:-74751011 MsG0580028111.01.T01:CDS
TGTGGAGTATCTGGAAAGCT+TGG 0.452920 5:-74751540 MsG0580028111.01.T01:CDS
AAGTGAGATGGAAAGGCCTT+TGG 0.454521 5:-74751096 MsG0580028111.01.T01:CDS
AATTTCGCCAGAGTCCCGTT+TGG 0.461902 5:+74752168 None:intergenic
CTGGCGAAATTCAAAGGAAA+CGG 0.464517 5:-74752156 MsG0580028111.01.T01:CDS
CCGGTGGTCAAGTATCTTCA+GGG 0.466032 5:-74751761 MsG0580028111.01.T01:CDS
CGGGGATCCAAACGGGACTC+TGG 0.468895 5:-74752175 MsG0580028111.01.T01:CDS
GAGAGGTATCCTGAAGTGTT+GGG 0.470423 5:-74751701 MsG0580028111.01.T01:CDS
CACTATTGATATGGAAGAGA+TGG 0.470517 5:-74750919 MsG0580028111.01.T01:CDS
GCCGAACATTAAACTCTTCG+AGG 0.470544 5:+74751423 None:intergenic
CTTTCCAGATACTCCACAAA+AGG 0.473709 5:+74751545 None:intergenic
CTTCTCTTATCTGCAAGCTT+CGG 0.475890 5:+74751341 None:intergenic
GCTTCATTCTAGTGTGGTTG+TGG 0.477857 5:-74751792 MsG0580028111.01.T01:CDS
AAACCATAAGTGAAGAATGC+TGG 0.479920 5:+74751056 None:intergenic
TGATTCGCGGGGATCCAAAC+GGG 0.487683 5:-74752182 MsG0580028111.01.T01:CDS
CAAATGAGGAAGATGATTGT+TGG 0.494500 5:-74751179 MsG0580028111.01.T01:CDS
GTGTTGGGATTCAAACTTGA+GGG 0.498220 5:-74751686 MsG0580028111.01.T01:CDS
GACCGGTGCTAGTGATTCGC+GGG 0.498722 5:-74752194 MsG0580028111.01.T01:CDS
GGTGTTGGAAGAAGAGAACT+TGG 0.498824 5:-74751626 MsG0580028111.01.T01:CDS
CCCTCGAAGAGTTTAATGTT+CGG 0.502365 5:-74751424 MsG0580028111.01.T01:CDS
GTTCCTGTGCTTGATTACCT+TGG 0.506625 5:-74751872 MsG0580028111.01.T01:CDS
TATTTGATTGGAATTGGTGT+TGG 0.509680 5:-74751641 MsG0580028111.01.T01:CDS
AAGGCCTTTCCATCTCACTT+TGG 0.511878 5:+74751099 None:intergenic
TGAGAGGTATCCTGAAGTGT+TGG 0.512556 5:-74751702 MsG0580028111.01.T01:CDS
TTAGTAACCATGTTATGCCT+AGG 0.513347 5:+74751017 None:intergenic
CCACGTTAACGCAGTTCTTG+CGG 0.514225 5:-74751829 MsG0580028111.01.T01:CDS
TGTTACGGTTGATGTTATGA+AGG 0.514841 5:-74751987 MsG0580028111.01.T01:CDS
TGGTCTTGAACTTCCTGTTA+CGG 0.514972 5:-74752002 MsG0580028111.01.T01:CDS
AATGTATTCATGTCAAATGA+TGG 0.519583 5:+74750888 None:intergenic
AGTCTAGCAATAGCTAGCCT+TGG 0.521140 5:+74751512 None:intergenic
TGTTTAAAGCAAGTAGTTGA+GGG 0.521469 5:+74751153 None:intergenic
AGGTCGGTTCCAATGATGTC+AGG 0.523721 5:+74751368 None:intergenic
GGGGCATCGTCGTTGTATGC+TGG 0.523913 5:-74752130 MsG0580028111.01.T01:CDS
AACCATAAGTGAAGAATGCT+GGG 0.524107 5:+74751057 None:intergenic
GTGATTCGCGGGGATCCAAA+CGG 0.524322 5:-74752183 MsG0580028111.01.T01:CDS
CCCGCATCCCCAAAATCTCC+GGG 0.534445 5:+74751585 None:intergenic
ATCTTCCTAATACAATTACA+TGG 0.538869 5:+74752271 None:intergenic
TGCAAGCTTCGGCTCTAGGT+CGG 0.547317 5:+74751352 None:intergenic
AATTCAAAGGAAACGGGGAG+GGG 0.548403 5:-74752149 MsG0580028111.01.T01:CDS
CGATTACTTCCAAAGTGAGA+TGG 0.549323 5:-74751108 MsG0580028111.01.T01:CDS
GGGACTCTGGCGAAATTCAA+AGG 0.550251 5:-74752162 MsG0580028111.01.T01:CDS
AAATTCAAAGGAAACGGGGA+GGG 0.552308 5:-74752150 MsG0580028111.01.T01:CDS
ATGTTTAAAGCAAGTAGTTG+AGG 0.555715 5:+74751152 None:intergenic
TTCTTCATTTCAGATAAACT+CGG 0.555909 5:+74752097 None:intergenic
CCCTGAAGATACTTGACCAC+CGG 0.559238 5:+74751761 None:intergenic
CCGCAAGAACTGCGTTAACG+TGG 0.564848 5:+74751829 None:intergenic
ATCTGAAATGAAGAAAGATA+AGG 0.568056 5:-74752089 MsG0580028111.01.T01:CDS
AGGATACTGAGCAATTATAG+AGG 0.570014 5:+74751388 None:intergenic
TCCCCGCGAATCACTAGCAC+CGG 0.572793 5:+74752192 None:intergenic
ACACTAGAATGAAGCACTTG+TGG 0.573884 5:+74751800 None:intergenic
TGTGCTTGATTTAGATGCTG+AGG 0.577892 5:-74751306 MsG0580028111.01.T01:CDS
AAATCAACGTGCTTCAGCAT+AGG 0.578326 5:+74751230 None:intergenic
AGAACACGAGGAATATCATC+CGG 0.579370 5:+74751725 None:intergenic
GGTCAAGTATCTTCAGGGGA+TGG 0.581823 5:-74751756 MsG0580028111.01.T01:CDS
TGTGGTTGTGGATCTTGTGC+CGG 0.581899 5:-74751780 MsG0580028111.01.T01:CDS
ACTTCCAAAGTGAGATGGAA+AGG 0.582725 5:-74751103 MsG0580028111.01.T01:CDS
ATATTCCTCGTGTTCTTGAG+AGG 0.588108 5:-74751718 MsG0580028111.01.T01:CDS
TGAGAAATTTGAGCAACGAA+TGG 0.590339 5:-74750949 MsG0580028111.01.T01:CDS
TCAGGGGATGGATATCAAGC+CGG 0.594300 5:-74751744 MsG0580028111.01.T01:CDS
ATAAGCAACAGATGTACTCA+TGG 0.595928 5:+74751661 None:intergenic
TCCTAACTCCCAATTTACCA+AGG 0.597942 5:+74751855 None:intergenic
ACACTACATCCCAATACAAG+AGG 0.604604 5:+74751908 None:intergenic
CCGAACATTAAACTCTTCGA+GGG 0.604717 5:+74751424 None:intergenic
TTACCAAGGTAATCAAGCAC+AGG 0.615617 5:+74751869 None:intergenic
TGGAAAGCTTGGGTATTCCA+AGG 0.618103 5:-74751529 MsG0580028111.01.T01:CDS
ACGACATATAGTTATAGGAC+CGG 0.622036 5:-74752211 MsG0580028111.01.T01:CDS
ACAAGTGCTTCATTCTAGTG+TGG 0.623981 5:-74751798 MsG0580028111.01.T01:CDS
ATTGTTTATGAGTTCTTGCG+AGG 0.628501 5:-74752052 MsG0580028111.01.T01:CDS
TGGAGTCAACTATAAAACCT+AGG 0.628708 5:-74751034 MsG0580028111.01.T01:CDS
GAATACATTGATGCGACCAA+AGG 0.630639 5:-74750874 MsG0580028111.01.T01:CDS
GGACCGGTGCTAGTGATTCG+CGG 0.635829 5:-74752195 MsG0580028111.01.T01:CDS
AATTCAACCAAATCTTCCAA+AGG 0.636431 5:+74751080 None:intergenic
GTTGGAAGAAGAGAACTTGG+AGG 0.640469 5:-74751623 MsG0580028111.01.T01:CDS
TATAAAACCTAGGCATAACA+TGG 0.645601 5:-74751024 MsG0580028111.01.T01:CDS
AATCATTGAGAAGATGCCGC+AGG 0.648015 5:-74751273 MsG0580028111.01.T01:CDS
CGGTGGTCAAGTATCTTCAG+GGG 0.659657 5:-74751760 MsG0580028111.01.T01:CDS
AGTGTTGGGATTCAAACTTG+AGG 0.668806 5:-74751687 MsG0580028111.01.T01:CDS
GGTTGTGGATCTTGTGCCGG+TGG 0.671700 5:-74751777 MsG0580028111.01.T01:CDS
GAAATTCAAAGGAAACGGGG+AGG 0.688989 5:-74752151 MsG0580028111.01.T01:CDS
ACCGGTGCTAGTGATTCGCG+GGG 0.691414 5:-74752193 MsG0580028111.01.T01:CDS
TCAGCATAGGTGTAGTACTG+AGG 0.702066 5:+74751243 None:intergenic
GGCGAAATTCAAAGGAAACG+GGG 0.719631 5:-74752154 MsG0580028111.01.T01:CDS
GTACTGAGGCTAACTACCTG+CGG 0.724109 5:+74751257 None:intergenic
GGATACCTCTCAAGAACACG+AGG 0.733931 5:+74751713 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAATCGAATCCAAGAATATA+AGG + Chr5:74751724-74751743 None:intergenic 25.0%
! AATGTATTCATGTCAAATGA+TGG + Chr5:74752312-74752331 None:intergenic 25.0%
! AATTGCCATGTAATTGTATT+AGG - Chr5:74750921-74750940 MsG0580028111.01.T01:CDS 25.0%
! ATCTTCCTAATACAATTACA+TGG + Chr5:74750929-74750948 None:intergenic 25.0%
! GTAATTGTATTAGGAAGATA+AGG - Chr5:74750930-74750949 MsG0580028111.01.T01:CDS 25.0%
! TTATATTCTTGGATTCGATT+TGG - Chr5:74751723-74751742 MsG0580028111.01.T01:CDS 25.0%
! TTCTTCATTTCAGATAAACT+CGG + Chr5:74751103-74751122 None:intergenic 25.0%
!! ATCTGAAATGAAGAAAGATA+AGG - Chr5:74751108-74751127 MsG0580028111.01.T01:CDS 25.0%
!! TTGATTTTCTTAAGGATTGT+GGG - Chr5:74751983-74752002 MsG0580028111.01.T01:CDS 25.0%
!! TTGATTTTCTTCATAGTTTG+GGG - Chr5:74751239-74751258 MsG0580028111.01.T01:CDS 25.0%
!!! GTTGATTTTCTTCATAGTTT+GGG - Chr5:74751238-74751257 MsG0580028111.01.T01:CDS 25.0%
AACAACTATCCTCTTGTATT+GGG - Chr5:74751280-74751299 MsG0580028111.01.T01:CDS 30.0%
AATTCAACCAAATCTTCCAA+AGG + Chr5:74752120-74752139 None:intergenic 30.0%
ATGTAGTGTCAAGAAGAATA+TGG - Chr5:74751303-74751322 MsG0580028111.01.T01:CDS 30.0%
CATAACATGGTTACTAAGAA+AGG - Chr5:74752186-74752205 MsG0580028111.01.T01:CDS 30.0%
CTTGATTACCTTGGTAAATT+GGG - Chr5:74751334-74751353 MsG0580028111.01.T01:CDS 30.0%
GAATGACCAAATGTTAGAAT+TGG + Chr5:74750872-74750891 None:intergenic 30.0%
GTTGCTTATTTGATTGGAAT+TGG - Chr5:74751550-74751569 MsG0580028111.01.T01:CDS 30.0%
TAACAACTATCCTCTTGTAT+TGG - Chr5:74751279-74751298 MsG0580028111.01.T01:CDS 30.0%
TATAAAACCTAGGCATAACA+TGG - Chr5:74752173-74752192 MsG0580028111.01.T01:CDS 30.0%
TATTTGATTGGAATTGGTGT+TGG - Chr5:74751556-74751575 MsG0580028111.01.T01:CDS 30.0%
! ACATCTGTTGCTTATTTGAT+TGG - Chr5:74751544-74751563 MsG0580028111.01.T01:CDS 30.0%
! ATGTTTAAAGCAAGTAGTTG+AGG + Chr5:74752048-74752067 None:intergenic 30.0%
! TGTTTAAAGCAAGTAGTTGA+GGG + Chr5:74752047-74752066 None:intergenic 30.0%
!! GTTGATTTTCTTAAGGATTG+TGG - Chr5:74751982-74752001 MsG0580028111.01.T01:CDS 30.0%
!!! CGTTGATTTTCTTCATAGTT+TGG - Chr5:74751237-74751256 MsG0580028111.01.T01:CDS 30.0%
AAACCATAAGTGAAGAATGC+TGG + Chr5:74752144-74752163 None:intergenic 35.0%
AACCATAAGTGAAGAATGCT+GGG + Chr5:74752143-74752162 None:intergenic 35.0%
AAGCTTCAATGTTCTGTTTC+TGG - Chr5:74750962-74750981 MsG0580028111.01.T01:CDS 35.0%
ACGACATATAGTTATAGGAC+CGG - Chr5:74750986-74751005 MsG0580028111.01.T01:CDS 35.0%
AGCATTCTTCACTTATGGTT+TGG - Chr5:74752143-74752162 MsG0580028111.01.T01:CDS 35.0%
AGGATACTGAGCAATTATAG+AGG + Chr5:74751812-74751831 None:intergenic 35.0%
AGGTATCTTAACTAGATTCC+CGG - Chr5:74751594-74751613 MsG0580028111.01.T01:CDS 35.0%
ATAAGCAACAGATGTACTCA+TGG + Chr5:74751539-74751558 None:intergenic 35.0%
ATTGTTTATGAGTTCTTGCG+AGG - Chr5:74751145-74751164 MsG0580028111.01.T01:CDS 35.0%
CAAATGAGGAAGATGATTGT+TGG - Chr5:74752018-74752037 MsG0580028111.01.T01:CDS 35.0%
CACTATTGATATGGAAGAGA+TGG - Chr5:74752278-74752297 MsG0580028111.01.T01:CDS 35.0%
CTGGTACGACATATAGTTAT+AGG - Chr5:74750981-74751000 MsG0580028111.01.T01:CDS 35.0%
GAGACACAACCTTATATTCT+TGG - Chr5:74751712-74751731 MsG0580028111.01.T01:CDS 35.0%
GATTTAGATGCTGAGGATTT+CGG - Chr5:74751898-74751917 MsG0580028111.01.T01:CDS 35.0%
GCTTGATTACCTTGGTAAAT+TGG - Chr5:74751333-74751352 MsG0580028111.01.T01:CDS 35.0%
GGACTATGACACTATTGATA+TGG - Chr5:74752269-74752288 MsG0580028111.01.T01:CDS 35.0%
TGAGAAATTTGAGCAACGAA+TGG - Chr5:74752248-74752267 MsG0580028111.01.T01:CDS 35.0%
TGATATGGAAGAGATGGAAA+TGG - Chr5:74752284-74752303 MsG0580028111.01.T01:CDS 35.0%
TGGAGTCAACTATAAAACCT+AGG - Chr5:74752163-74752182 MsG0580028111.01.T01:CDS 35.0%
TTAGTAACCATGTTATGCCT+AGG + Chr5:74752183-74752202 None:intergenic 35.0%
TTCATAACATCAACCGTAAC+AGG + Chr5:74751211-74751230 None:intergenic 35.0%
! GAAAGGATTAAAGTGTTCTC+TGG - Chr5:74752203-74752222 MsG0580028111.01.T01:CDS 35.0%
! TGTTACGGTTGATGTTATGA+AGG - Chr5:74751210-74751229 MsG0580028111.01.T01:CDS 35.0%
!!! GAAGCACGTTGATTTTCTTA+AGG - Chr5:74751975-74751994 MsG0580028111.01.T01:CDS 35.0%
AAATCAACGTGCTTCAGCAT+AGG + Chr5:74751970-74751989 None:intergenic 40.0%
AAATTCAAAGGAAACGGGGA+GGG - Chr5:74751047-74751066 MsG0580028111.01.T01:CDS 40.0%
ACAAGTGCTTCATTCTAGTG+TGG - Chr5:74751399-74751418 MsG0580028111.01.T01:CDS 40.0%
ACACTACATCCCAATACAAG+AGG + Chr5:74751292-74751311 None:intergenic 40.0%
ACCTTGGTAAATTGGGAGTT+AGG - Chr5:74751341-74751360 MsG0580028111.01.T01:CDS 40.0%
ACTTCCAAAGTGAGATGGAA+AGG - Chr5:74752094-74752113 MsG0580028111.01.T01:CDS 40.0%
AGAACACGAGGAATATCATC+CGG + Chr5:74751475-74751494 None:intergenic 40.0%
AGTTTGAATCCCAACACTTC+AGG + Chr5:74751508-74751527 None:intergenic 40.0%
ATATTCCTCGTGTTCTTGAG+AGG - Chr5:74751479-74751498 MsG0580028111.01.T01:CDS 40.0%
ATTGTTCCTGATGAGCTTGA+TGG - Chr5:74751175-74751194 MsG0580028111.01.T01:CDS 40.0%
CCCTCGAAGAGTTTAATGTT+CGG - Chr5:74751773-74751792 MsG0580028111.01.T01:CDS 40.0%
CCGAACATTAAACTCTTCGA+GGG + Chr5:74751776-74751795 None:intergenic 40.0%
CGATTACTTCCAAAGTGAGA+TGG - Chr5:74752089-74752108 MsG0580028111.01.T01:CDS 40.0%
CTGGCGAAATTCAAAGGAAA+CGG - Chr5:74751041-74751060 MsG0580028111.01.T01:CDS 40.0%
CTTCTCTTATCTGCAAGCTT+CGG + Chr5:74751859-74751878 None:intergenic 40.0%
CTTTCCAGATACTCCACAAA+AGG + Chr5:74751655-74751674 None:intergenic 40.0%
GAATACATTGATGCGACCAA+AGG - Chr5:74752323-74752342 MsG0580028111.01.T01:CDS 40.0%
GTGTTGGGATTCAAACTTGA+GGG - Chr5:74751511-74751530 MsG0580028111.01.T01:CDS 40.0%
TATGAGTTCTTGCGAGGAAT+CGG - Chr5:74751151-74751170 MsG0580028111.01.T01:CDS 40.0%
TCCTAACTCCCAATTTACCA+AGG + Chr5:74751345-74751364 None:intergenic 40.0%
TGGCGAAATTCAAAGGAAAC+GGG - Chr5:74751042-74751061 MsG0580028111.01.T01:CDS 40.0%
TGTGCTTGATTTAGATGCTG+AGG - Chr5:74751891-74751910 MsG0580028111.01.T01:CDS 40.0%
TTACCAAGGTAATCAAGCAC+AGG + Chr5:74751331-74751350 None:intergenic 40.0%
TTCCCAGCATTCTTCACTTA+TGG - Chr5:74752138-74752157 MsG0580028111.01.T01:CDS 40.0%
! AACTAGATTCCCGGAGATTT+TGG - Chr5:74751603-74751622 MsG0580028111.01.T01:CDS 40.0%
! ACACTAGAATGAAGCACTTG+TGG + Chr5:74751400-74751419 None:intergenic 40.0%
! ACTAGATTCCCGGAGATTTT+GGG - Chr5:74751604-74751623 MsG0580028111.01.T01:CDS 40.0%
! AGTGTTGGGATTCAAACTTG+AGG - Chr5:74751510-74751529 MsG0580028111.01.T01:CDS 40.0%
! GATTAAAGTGTTCTCTGGCT+TGG - Chr5:74752208-74752227 MsG0580028111.01.T01:CDS 40.0%
! GGTTTTCTGTGGATCAAATG+AGG - Chr5:74752004-74752023 MsG0580028111.01.T01:CDS 40.0%
! TAAGGATTGTGGGTTTTCTG+TGG - Chr5:74751993-74752012 MsG0580028111.01.T01:CDS 40.0%
! TAGAGTCATCAAGCCTTTTG+TGG - Chr5:74751639-74751658 MsG0580028111.01.T01:CDS 40.0%
! TGGTCTTGAACTTCCTGTTA+CGG - Chr5:74751195-74751214 MsG0580028111.01.T01:CDS 40.0%
AAGGCCTTTCCATCTCACTT+TGG + Chr5:74752101-74752120 None:intergenic 45.0%
AAGTGAGATGGAAAGGCCTT+TGG - Chr5:74752101-74752120 MsG0580028111.01.T01:CDS 45.0%
AATCATTGAGAAGATGCCGC+AGG - Chr5:74751924-74751943 MsG0580028111.01.T01:CDS 45.0%
AATTCAAAGGAAACGGGGAG+GGG - Chr5:74751048-74751067 MsG0580028111.01.T01:CDS 45.0%
GAAATTCAAAGGAAACGGGG+AGG - Chr5:74751046-74751065 MsG0580028111.01.T01:CDS 45.0%
GCCGAACATTAAACTCTTCG+AGG + Chr5:74751777-74751796 None:intergenic 45.0%
GCTCAGTATCCTGACATCAT+TGG - Chr5:74751820-74751839 MsG0580028111.01.T01:CDS 45.0%
GCTTCATTCTAGTGTGGTTG+TGG - Chr5:74751405-74751424 MsG0580028111.01.T01:CDS 45.0%
GGCGAAATTCAAAGGAAACG+GGG - Chr5:74751043-74751062 MsG0580028111.01.T01:CDS 45.0%
GTTCCTGTGCTTGATTACCT+TGG - Chr5:74751325-74751344 MsG0580028111.01.T01:CDS 45.0%
GTTGGAAGAAGAGAACTTGG+AGG - Chr5:74751574-74751593 MsG0580028111.01.T01:CDS 45.0%
TCAAGACCATCAAGCTCATC+AGG + Chr5:74751184-74751203 None:intergenic 45.0%
TCAGCATAGGTGTAGTACTG+AGG + Chr5:74751957-74751976 None:intergenic 45.0%
TGGAAAGCTTGGGTATTCCA+AGG - Chr5:74751668-74751687 MsG0580028111.01.T01:CDS 45.0%
! AGTCTAGCAATAGCTAGCCT+TGG + Chr5:74751688-74751707 None:intergenic 45.0%
! CTAGATTCCCGGAGATTTTG+GGG - Chr5:74751605-74751624 MsG0580028111.01.T01:CDS 45.0%
! GGAAAGGCCTTTGGAAGATT+TGG - Chr5:74752110-74752129 MsG0580028111.01.T01:CDS 45.0%
! GGTGTTGGAAGAAGAGAACT+TGG - Chr5:74751571-74751590 MsG0580028111.01.T01:CDS 45.0%
! GTGGAGTATCTGGAAAGCTT+GGG - Chr5:74751658-74751677 MsG0580028111.01.T01:CDS 45.0%
! TGTGGAGTATCTGGAAAGCT+TGG - Chr5:74751657-74751676 MsG0580028111.01.T01:CDS 45.0%
!! CAAGCCTTTTGTGGAGTATC+TGG - Chr5:74751648-74751667 MsG0580028111.01.T01:CDS 45.0%
!! GAGAGGTATCCTGAAGTGTT+GGG - Chr5:74751496-74751515 MsG0580028111.01.T01:CDS 45.0%
!! TGAGAGGTATCCTGAAGTGT+TGG - Chr5:74751495-74751514 MsG0580028111.01.T01:CDS 45.0%
AATTTCGCCAGAGTCCCGTT+TGG + Chr5:74751032-74751051 None:intergenic 50.0%
CCACGTTAACGCAGTTCTTG+CGG - Chr5:74751368-74751387 MsG0580028111.01.T01:CDS 50.0%
CCCTGAAGATACTTGACCAC+CGG + Chr5:74751439-74751458 None:intergenic 50.0%
CCGGTGGTCAAGTATCTTCA+GGG - Chr5:74751436-74751455 MsG0580028111.01.T01:CDS 50.0%
CGGTGGTCAAGTATCTTCAG+GGG - Chr5:74751437-74751456 MsG0580028111.01.T01:CDS 50.0%
GGATACCTCTCAAGAACACG+AGG + Chr5:74751487-74751506 None:intergenic 50.0%
GGGACTCTGGCGAAATTCAA+AGG - Chr5:74751035-74751054 MsG0580028111.01.T01:CDS 50.0%
GGTCAAGTATCTTCAGGGGA+TGG - Chr5:74751441-74751460 MsG0580028111.01.T01:CDS 50.0%
GTACTGAGGCTAACTACCTG+CGG + Chr5:74751943-74751962 None:intergenic 50.0%
TATCTGCAAGCTTCGGCTCT+AGG + Chr5:74751852-74751871 None:intergenic 50.0%
TCAGGGGATGGATATCAAGC+CGG - Chr5:74751453-74751472 MsG0580028111.01.T01:CDS 50.0%
TCTTCGAGGGATTCGACGTT+TGG + Chr5:74751763-74751782 None:intergenic 50.0%
TGTGGTTGTGGATCTTGTGC+CGG - Chr5:74751417-74751436 MsG0580028111.01.T01:CDS 50.0%
! AGGTCGGTTCCAATGATGTC+AGG + Chr5:74751832-74751851 None:intergenic 50.0%
ACCCGCATCCCCAAAATCTC+CGG + Chr5:74751616-74751635 None:intergenic 55.0%
CCGCAAGAACTGCGTTAACG+TGG + Chr5:74751371-74751390 None:intergenic 55.0%
GCCGGTGGTCAAGTATCTTC+AGG - Chr5:74751435-74751454 MsG0580028111.01.T01:CDS 55.0%
GTGATTCGCGGGGATCCAAA+CGG - Chr5:74751014-74751033 MsG0580028111.01.T01:CDS 55.0%
TGATTCGCGGGGATCCAAAC+GGG - Chr5:74751015-74751034 MsG0580028111.01.T01:CDS 55.0%
!! GAGATTTTGGGGATGCGGGT+TGG - Chr5:74751616-74751635 MsG0580028111.01.T01:CDS 55.0%
!! TCCCGGAGATTTTGGGGATG+CGG - Chr5:74751611-74751630 MsG0580028111.01.T01:CDS 55.0%
!! TGCAAGCTTCGGCTCTAGGT+CGG + Chr5:74751848-74751867 None:intergenic 55.0%
CCCGCATCCCCAAAATCTCC+GGG + Chr5:74751615-74751634 None:intergenic 60.0%
GGTTGTGGATCTTGTGCCGG+TGG - Chr5:74751420-74751439 MsG0580028111.01.T01:CDS 60.0%
TCCCCGCGAATCACTAGCAC+CGG + Chr5:74751008-74751027 None:intergenic 60.0%
! ACCGGTGCTAGTGATTCGCG+GGG - Chr5:74751004-74751023 MsG0580028111.01.T01:CDS 60.0%
! GACCGGTGCTAGTGATTCGC+GGG - Chr5:74751003-74751022 MsG0580028111.01.T01:CDS 60.0%
! GGACCGGTGCTAGTGATTCG+CGG - Chr5:74751002-74751021 MsG0580028111.01.T01:CDS 60.0%
!! CCCGGAGATTTTGGGGATGC+GGG - Chr5:74751612-74751631 MsG0580028111.01.T01:CDS 60.0%
!! GGGGCATCGTCGTTGTATGC+TGG - Chr5:74751067-74751086 MsG0580028111.01.T01:CDS 60.0%
CGGGGATCCAAACGGGACTC+TGG - Chr5:74751022-74751041 MsG0580028111.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 74750866 74752353 74750866 ID=MsG0580028111.01;Name=MsG0580028111.01
Chr5 mRNA 74750866 74752353 74750866 ID=MsG0580028111.01.T01;Parent=MsG0580028111.01;Name=MsG0580028111.01.T01;_AED=0.21;_eAED=0.21;_QI=0|-1|0|1|-1|1|1|0|495
Chr5 exon 74750866 74752353 74750866 ID=MsG0580028111.01.T01:exon:15270;Parent=MsG0580028111.01.T01
Chr5 CDS 74750866 74752353 74750866 ID=MsG0580028111.01.T01:cds;Parent=MsG0580028111.01.T01
Gene Sequence

>MsG0580028111.01.T01

ATGCCAATTCTAACATTTGGTCATTCTAAGTTAACTGCTGCTACACTAGCTCTTCAATTGCCATGTAATTGTATTAGGAAGATAAGGTTTATTACAAAGCTTCAATGTTCTGTTTCTGGTACGACATATAGTTATAGGACCGGTGCTAGTGATTCGCGGGGATCCAAACGGGACTCTGGCGAAATTCAAAGGAAACGGGGAGGGGCATCGTCGTTGTATGCTGGTTATGCTCGTCCGAGTTTATCTGAAATGAAGAAAGATAAGGTGACATTGCGTGAAATTGTTTATGAGTTCTTGCGAGGAATCGGCATTGTTCCTGATGAGCTTGATGGTCTTGAACTTCCTGTTACGGTTGATGTTATGAAGGAGCGCGTTGATTTTCTTCATAGTTTGGGGCTTACGATTGAAGATATTAACAACTATCCTCTTGTATTGGGATGTAGTGTCAAGAAGAATATGGTTCCTGTGCTTGATTACCTTGGTAAATTGGGAGTTAGGAAATCCACGTTAACGCAGTTCTTGCGGAGATATCCACAAGTGCTTCATTCTAGTGTGGTTGTGGATCTTGTGCCGGTGGTCAAGTATCTTCAGGGGATGGATATCAAGCCGGATGATATTCCTCGTGTTCTTGAGAGGTATCCTGAAGTGTTGGGATTCAAACTTGAGGGAACCATGAGTACATCTGTTGCTTATTTGATTGGAATTGGTGTTGGAAGAAGAGAACTTGGAGGTATCTTAACTAGATTCCCGGAGATTTTGGGGATGCGGGTTGGTAGAGTCATCAAGCCTTTTGTGGAGTATCTGGAAAGCTTGGGTATTCCAAGGCTAGCTATTGCTAGACTGATAGAGACACAACCTTATATTCTTGGATTCGATTTGGACGAGAAAGTGAAGCCAAACGTCGAATCCCTCGAAGAGTTTAATGTTCGGCAGACATCGCTTGCCTCTATAATTGCTCAGTATCCTGACATCATTGGAACCGACCTAGAGCCGAAGCTTGCAGATAAGAGAAGTGTGCTCAATTCTGTGCTTGATTTAGATGCTGAGGATTTCGGCTTAATCATTGAGAAGATGCCGCAGGTAGTTAGCCTCAGTACTACACCTATGCTGAAGCACGTTGATTTTCTTAAGGATTGTGGGTTTTCTGTGGATCAAATGAGGAAGATGATTGTTGGATGCCCTCAACTACTTGCTTTAAACATTGATATCATGAAACTTAGCTTCGATTACTTCCAAAGTGAGATGGAAAGGCCTTTGGAAGATTTGGTTGAATTCCCAGCATTCTTCACTTATGGTTTGGAGTCAACTATAAAACCTAGGCATAACATGGTTACTAAGAAAGGATTAAAGTGTTCTCTGGCTTGGATGCTTAACTGTTCTGATGAGAAATTTGAGCAACGAATGGACTATGACACTATTGATATGGAAGAGATGGAAATGGAACCATCATTTGACATGAATACATTGATGCGACCAAAGGAGCGATGA

Protein sequence

>MsG0580028111.01.T01

MPILTFGHSKLTAATLALQLPCNCIRKIRFITKLQCSVSGTTYSYRTGASDSRGSKRDSGEIQRKRGGASSLYAGYARPSLSEMKKDKVTLREIVYEFLRGIGIVPDELDGLELPVTVDVMKERVDFLHSLGLTIEDINNYPLVLGCSVKKNMVPVLDYLGKLGVRKSTLTQFLRRYPQVLHSSVVVDLVPVVKYLQGMDIKPDDIPRVLERYPEVLGFKLEGTMSTSVAYLIGIGVGRRELGGILTRFPEILGMRVGRVIKPFVEYLESLGIPRLAIARLIETQPYILGFDLDEKVKPNVESLEEFNVRQTSLASIIAQYPDIIGTDLEPKLADKRSVLNSVLDLDAEDFGLIIEKMPQVVSLSTTPMLKHVDFLKDCGFSVDQMRKMIVGCPQLLALNIDIMKLSFDYFQSEMERPLEDLVEFPAFFTYGLESTIKPRHNMVTKKGLKCSLAWMLNCSDEKFEQRMDYDTIDMEEMEMEPSFDMNTLMRPKER*