AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040061.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040061.01.T01 MTR_7g083900 98.065 310 1 2 1 310 131 435 0.0 613
MsG0780040061.01.T01 MTR_7g083900 98.065 310 1 2 1 310 131 435 0.0 613
MsG0780040061.01.T01 MTR_3g498695 65.060 249 53 8 76 310 217 445 2.35e-92 283
MsG0780040061.01.T01 MTR_3g498695 65.060 249 53 8 76 310 217 445 2.69e-92 283
MsG0780040061.01.T01 MTR_3g030700 49.580 238 96 7 85 310 113 338 9.36e-56 185
MsG0780040061.01.T01 MTR_2g081040 55.195 154 65 2 157 310 175 324 2.62e-46 160
MsG0780040061.01.T01 MTR_3g104100 53.896 154 67 2 157 310 193 342 4.50e-46 160
MsG0780040061.01.T01 MTR_5g030770 46.154 169 62 6 146 310 141 284 1.59e-29 115
MsG0780040061.01.T01 MTR_3g111290 46.012 163 58 6 149 310 163 296 1.87e-29 115
MsG0780040061.01.T01 MTR_5g030770 45.562 169 57 6 146 310 141 278 1.33e-27 109
MsG0780040061.01.T01 MTR_1g112680 35.519 183 96 5 146 310 304 482 1.67e-24 103
MsG0780040061.01.T01 MTR_1g072320 35.000 160 90 6 149 304 460 609 2.20e-15 77.0
MsG0780040061.01.T01 MTR_2g038040 34.503 171 96 8 150 312 43 205 1.41e-14 72.4
MsG0780040061.01.T01 MTR_8g064700 30.769 156 99 3 152 307 237 383 6.68e-13 69.3
MsG0780040061.01.T01 MTR_8g024790 57.895 57 22 1 157 213 289 343 9.97e-13 68.9
MsG0780040061.01.T01 MTR_8g024770 57.895 57 22 1 157 213 277 331 1.67e-12 68.2
MsG0780040061.01.T01 MTR_7g117670 44.944 89 44 2 157 242 400 486 2.01e-12 68.2
MsG0780040061.01.T01 MTR_8g027495 51.613 62 28 1 157 218 456 515 4.34e-12 67.0
MsG0780040061.01.T01 MTR_4g057270 50.000 66 31 1 152 217 142 205 7.32e-12 65.9
MsG0780040061.01.T01 MTR_2g084280 28.395 162 98 3 147 307 121 265 8.26e-12 65.5
MsG0780040061.01.T01 MTR_7g096350 41.111 90 44 2 134 216 323 410 2.33e-11 64.7
MsG0780040061.01.T01 MTR_8g067280 33.540 161 90 5 157 310 460 610 3.41e-11 64.3
MsG0780040061.01.T01 MTR_4g009540 30.612 147 88 5 161 304 154 289 3.73e-11 63.5
MsG0780040061.01.T01 MTR_4g009540 30.612 147 88 5 161 304 154 289 4.29e-11 63.5
MsG0780040061.01.T01 MTR_5g030430 53.704 54 23 1 157 210 491 542 5.37e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040061.01.T01 AT3G26744 66.245 237 65 7 76 310 231 454 3.79e-86 267
MsG0780040061.01.T01 AT3G26744 66.245 237 65 7 76 310 231 454 6.16e-86 267
MsG0780040061.01.T01 AT3G26744 66.245 237 65 7 76 310 231 454 6.16e-86 267
MsG0780040061.01.T01 AT3G26744 66.245 237 65 7 76 310 231 454 6.16e-86 267
MsG0780040061.01.T01 AT1G12860 52.960 321 103 11 1 310 127 410 1.72e-82 256
MsG0780040061.01.T01 AT1G12860 52.648 321 104 10 1 310 127 410 2.90e-82 256
MsG0780040061.01.T01 AT2G16910 42.442 172 79 6 158 315 313 478 1.01e-28 116
MsG0780040061.01.T01 AT5G65640 47.853 163 66 5 148 310 167 310 1.31e-28 113
MsG0780040061.01.T01 AT5G10570 44.379 169 62 5 144 310 136 274 2.18e-25 103
MsG0780040061.01.T01 AT5G65640 72.464 69 17 1 148 216 167 233 4.75e-20 88.6
MsG0780040061.01.T01 AT1G12860 38.579 197 83 8 1 187 127 295 1.58e-17 82.0
MsG0780040061.01.T01 AT4G29930 30.612 147 80 4 158 304 53 177 7.33e-15 73.2
MsG0780040061.01.T01 AT3G26744 50.877 114 45 5 76 187 231 335 9.62e-15 74.3
MsG0780040061.01.T01 AT4G29930 30.612 147 80 4 158 304 53 177 1.90e-14 72.0
MsG0780040061.01.T01 AT4G29930 30.612 147 83 5 158 304 53 180 8.89e-14 70.1
MsG0780040061.01.T01 AT2G46510 45.783 83 35 2 142 216 370 450 1.05e-13 72.0
MsG0780040061.01.T01 AT2G28160 35.652 115 59 3 103 217 88 187 2.00e-13 70.1
MsG0780040061.01.T01 AT5G57150 34.146 164 95 7 158 316 54 209 2.23e-13 68.6
MsG0780040061.01.T01 AT2G28160 35.652 115 59 3 103 217 88 187 2.29e-13 70.1
MsG0780040061.01.T01 AT5G57150 34.146 164 95 7 158 316 53 208 2.54e-13 68.9
MsG0780040061.01.T01 AT5G57150 34.146 164 95 7 158 316 54 209 2.57e-13 68.6
MsG0780040061.01.T01 AT5G57150 33.939 165 96 7 157 316 52 208 2.91e-13 68.6
MsG0780040061.01.T01 AT4G29930 46.377 69 35 1 158 226 53 119 4.81e-13 67.0
MsG0780040061.01.T01 AT4G29930 46.377 69 35 1 158 226 53 119 7.70e-13 67.8
MsG0780040061.01.T01 AT1G01260 40.000 125 56 4 106 225 392 502 8.97e-13 69.3
MsG0780040061.01.T01 AT1G01260 40.000 125 56 4 106 225 392 502 8.97e-13 69.3
MsG0780040061.01.T01 AT1G01260 40.000 125 56 4 106 225 392 502 8.97e-13 69.3
MsG0780040061.01.T01 AT4G29930 46.377 69 35 1 158 226 53 119 1.03e-12 67.4
MsG0780040061.01.T01 AT4G29930 46.377 69 35 1 158 226 53 119 1.03e-12 67.4
MsG0780040061.01.T01 AT5G57150 33.735 166 93 7 158 316 54 209 1.11e-12 67.4
MsG0780040061.01.T01 AT1G10610 40.449 89 46 2 135 218 138 224 2.70e-11 63.9
MsG0780040061.01.T01 AT1G10610 40.449 89 46 2 135 218 205 291 3.47e-11 63.9
MsG0780040061.01.T01 AT4G17880 53.704 54 23 1 157 210 414 465 3.64e-11 64.3
MsG0780040061.01.T01 AT1G32640 50.000 60 28 1 157 216 450 507 3.71e-11 64.3
MsG0780040061.01.T01 AT4G00870 45.070 71 35 2 150 218 238 306 3.94e-11 63.9
MsG0780040061.01.T01 AT5G46760 48.387 62 30 1 157 218 413 472 4.22e-11 64.3
MsG0780040061.01.T01 AT1G10610 40.449 89 46 2 135 218 235 321 4.32e-11 63.9

Find 92 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGAAAATGGATTCTTTA+TGG 0.140965 7:+72566190 MsG0780040061.01.T01:CDS
TTTGAAATGGGGTTTGAAAA+TGG 0.212995 7:+72566179 None:intergenic
TTTGAAAATGGATTCTTTAT+GGG 0.287664 7:+72566191 MsG0780040061.01.T01:CDS
TCAGCCATCAAATTCTTTGC+AGG 0.331079 7:-72566653 None:intergenic
AGAGAAAGGTGGAGAAGAGC+TGG 0.362560 7:+72566477 MsG0780040061.01.T01:CDS
GCTATCTACCATGAGGGCTT+TGG 0.366010 7:+72567828 MsG0780040061.01.T01:CDS
GCCTAAAATTAGCAAGTATA+TGG 0.374097 7:+72566730 MsG0780040061.01.T01:CDS
TCAAATGGGACTGTTGTTAC+TGG 0.376369 7:+72566596 MsG0780040061.01.T01:CDS
TACAGGTGGAAGTTAGAGTA+AGG 0.391657 7:+72567752 MsG0780040061.01.T01:intron
AGGGACCCACCCATGAAAAC+AGG 0.394342 7:-72566236 None:intergenic
AATGATTTGAATAATTCAAA+TGG 0.403338 7:+72566581 MsG0780040061.01.T01:CDS
CGCTGTTTCAGAAGCGTCGT+GGG 0.407593 7:+72566411 MsG0780040061.01.T01:CDS
TGATGATGTTGTTGTGGTTG+TGG 0.425371 7:-72566353 None:intergenic
TAATAATCTTCATAATGAAC+TGG 0.430336 7:+72567380 MsG0780040061.01.T01:CDS
GAAGGTTGCAGCAGTGAGCC+AGG 0.431678 7:-72567414 None:intergenic
GCTTCCTGCAAAGAATTTGA+TGG 0.433280 7:+72566649 MsG0780040061.01.T01:CDS
TAGATCCTCTTTGACTCGAC+AGG 0.449537 7:-72567484 None:intergenic
GAAGAAGGAAGTGGTGGTGG+TGG 0.454840 7:+72566503 MsG0780040061.01.T01:CDS
TATCATTGAGTTTCTTCCTC+CGG 0.461791 7:-72566682 None:intergenic
CCTTGGATTGGATGTTCAGC+AGG 0.462769 7:+72567855 MsG0780040061.01.T01:CDS
GAAGGAAGTGGTGGTGGTGG+TGG 0.463647 7:+72566506 MsG0780040061.01.T01:CDS
ATGATAGGTTGTATATGCTT+AGG 0.465770 7:+72566699 MsG0780040061.01.T01:CDS
AATTATGATTCTGATGAGAA+TGG 0.466202 7:+72566557 MsG0780040061.01.T01:CDS
GGCTTTGGATAACCTTGGAT+TGG 0.469562 7:+72567843 MsG0780040061.01.T01:CDS
TTCCCCACGGTCTCCAACCT+CGG 0.472317 7:-72566446 None:intergenic
GAGAAGAGCTGGGAAGAAGA+AGG 0.472684 7:+72566488 MsG0780040061.01.T01:CDS
GGCGTTGGAGATTCCGAGGT+TGG 0.477216 7:+72566433 MsG0780040061.01.T01:CDS
TCGGTGGAGTGGGTGTCAAC+GGG 0.480196 7:-72567455 None:intergenic
ATGATTTGAATAATTCAAAT+GGG 0.485439 7:+72566582 MsG0780040061.01.T01:CDS
TTTGGGGCTTAGCAAGTCAC+CGG 0.489029 7:-72567511 None:intergenic
ACAAAACATATGAATGTTGA+CGG 0.497241 7:-72567785 None:intergenic
TCAGAAGCGTCGTGGGGCGT+TGG 0.498023 7:+72566418 MsG0780040061.01.T01:CDS
CGCTTCTGAAACAGCGTCGT+GGG 0.499455 7:-72566404 None:intergenic
GTCGGTGGAGTGGGTGTCAA+CGG 0.499586 7:-72567456 None:intergenic
ATGAGGGCTTTGGATAACCT+TGG 0.500549 7:+72567838 MsG0780040061.01.T01:CDS
AGGAAACTCAGAAGCTGAAA+GGG 0.502922 7:-72566255 None:intergenic
GAAGAAGAAGGAAGTGGTGG+TGG 0.503536 7:+72566500 MsG0780040061.01.T01:CDS
GAGAAAGGTGGAGAAGAGCT+GGG 0.504559 7:+72566478 MsG0780040061.01.T01:CDS
ATGGACAGGGCTTCAATACT+CGG 0.509966 7:+72567318 MsG0780040061.01.T01:CDS
GAAGCACTGAAAGGTGGTAC+TGG 0.513909 7:-72566302 None:intergenic
GGAGGAAGAAACTCAATGAT+AGG 0.514773 7:+72566684 MsG0780040061.01.T01:CDS
AGCTGGGAAGAAGAAGGAAG+TGG 0.518800 7:+72566494 MsG0780040061.01.T01:CDS
TCTCTTCTTCTTGTTCCCCA+CGG 0.521728 7:-72566459 None:intergenic
ATTATGATTCTGATGAGAAT+GGG 0.525864 7:+72566558 MsG0780040061.01.T01:CDS
ATTTGATGGCTGAGAGGCGC+CGG 0.526012 7:+72566663 MsG0780040061.01.T01:CDS
CAGGGAAGAGTCGGTGGAGT+GGG 0.527264 7:-72567465 None:intergenic
GTCAAAGAGGATCTATATCC+CGG 0.532043 7:+72567492 MsG0780040061.01.T01:CDS
GAGGAAACTCAGAAGCTGAA+AGG 0.532923 7:-72566256 None:intergenic
TCAGAAGGGGAAGAAGAAGA+AGG 0.533310 7:+72566625 MsG0780040061.01.T01:CDS
ACAGGTGGAAGTTAGAGTAA+GGG 0.540261 7:+72567753 MsG0780040061.01.T01:intron
CAGAAGGGGAAGAAGAAGAA+GGG 0.544979 7:+72566626 MsG0780040061.01.T01:CDS
GTGGAAGTTAGAGTAAGGGA+AGG 0.547671 7:+72567757 MsG0780040061.01.T01:CDS
GATTCCGAGGTTGGAGACCG+TGG 0.550901 7:+72566442 MsG0780040061.01.T01:CDS
AGATGCAGTTGACTACTTGA+AGG 0.553444 7:+72567341 MsG0780040061.01.T01:CDS
ACGCTGTTTCAGAAGCGTCG+TGG 0.560372 7:+72566410 MsG0780040061.01.T01:CDS
TGAAAGCTTGCACTTGCAGA+AGG 0.560535 7:-72567432 None:intergenic
AAGGTTATCCAAAGCCCTCA+TGG 0.562752 7:-72567836 None:intergenic
TGATGATGATGATGTTGTTG+TGG 0.568352 7:-72566359 None:intergenic
ATTCCGAGGTTGGAGACCGT+GGG 0.568857 7:+72566443 MsG0780040061.01.T01:CDS
TGTTACTGGTGGAGATCAGA+AGG 0.571281 7:+72566610 MsG0780040061.01.T01:CDS
TGGAAGTTAGAGTAAGGGAA+GGG 0.572558 7:+72567758 MsG0780040061.01.T01:CDS
TGTGGTTGAGCTAGCTCAAG+AGG 0.578961 7:-72566335 None:intergenic
GAACAAGAAGAAGAGAAAGG+TGG 0.581110 7:+72566466 MsG0780040061.01.T01:CDS
TGGGAAGAAGAAGGAAGTGG+TGG 0.581705 7:+72566497 MsG0780040061.01.T01:CDS
TCTTCCCTGTCGAGTCAAAG+AGG 0.586826 7:+72567479 MsG0780040061.01.T01:CDS
GGGACCCACCCATGAAAACA+GGG 0.591270 7:-72566235 None:intergenic
AGAAGGGGAAGAAGAAGAAG+GGG 0.595564 7:+72566627 MsG0780040061.01.T01:CDS
AATGGGACTGTTGTTACTGG+TGG 0.595592 7:+72566599 MsG0780040061.01.T01:CDS
TTGACTCGACAGGGAAGAGT+CGG 0.596564 7:-72567474 None:intergenic
TGATGGCTGAGAGGCGCCGG+AGG 0.599553 7:+72566666 MsG0780040061.01.T01:CDS
ACTTGAAGGAGCTGCTGCAG+CGG 0.611585 7:+72567355 MsG0780040061.01.T01:CDS
ACTCGACAGGGAAGAGTCGG+TGG 0.612573 7:-72567471 None:intergenic
CAAAGAATTTGATGGCTGAG+AGG 0.613701 7:+72566657 MsG0780040061.01.T01:CDS
ACAGGGAAGAGTCGGTGGAG+TGG 0.614037 7:-72567466 None:intergenic
ATGGTAGATAGCAAAAGTCC+TGG 0.618329 7:-72567817 None:intergenic
ATAGAAAACGAAGCACTGAA+AGG 0.618637 7:-72566311 None:intergenic
GAACTGGAATCAACTCCACC+TGG 0.619030 7:+72567396 MsG0780040061.01.T01:CDS
GGGGAACAAGAAGAAGAGAA+AGG 0.621823 7:+72566463 MsG0780040061.01.T01:CDS
GTTACTGGTGGAGATCAGAA+GGG 0.630933 7:+72566611 MsG0780040061.01.T01:CDS
TTGGGGCTTAGCAAGTCACC+GGG 0.636110 7:-72567510 None:intergenic
GTGGGGCGTTGGAGATTCCG+AGG 0.636781 7:+72566429 MsG0780040061.01.T01:CDS
GAAAACGAAGCACTGAAAGG+TGG 0.640228 7:-72566308 None:intergenic
CCTGCTGAACATCCAATCCA+AGG 0.640256 7:-72567855 None:intergenic
ACGCTTCTGAAACAGCGTCG+TGG 0.647570 7:-72566405 None:intergenic
AGATCCTCTTTGACTCGACA+GGG 0.653087 7:-72567483 None:intergenic
TTACTGGTGGAGATCAGAAG+GGG 0.669179 7:+72566612 MsG0780040061.01.T01:CDS
GGTTGCAGCAGTGAGCCAGG+TGG 0.670958 7:-72567411 None:intergenic
GCTGTTTCAGAAGCGTCGTG+GGG 0.673826 7:+72566412 MsG0780040061.01.T01:CDS
TTCCGAGGTTGGAGACCGTG+GGG 0.692226 7:+72566444 MsG0780040061.01.T01:CDS
GGACCCACCCATGAAAACAG+GGG 0.693712 7:-72566234 None:intergenic
GCAGCATCGAGTTCAAGACT+CGG 0.694688 7:-72566278 None:intergenic
GCATCGAGTTCAAGACTCGG+AGG 0.717250 7:-72566275 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTCATTTATTTTATAGA+TGG + Chr7:72567299-72567318 MsG0780040061.01.T01:intron 10.0%
!!! TAATTTTACTATTTATTCAA+TGG - Chr7:72567001-72567020 None:intergenic 10.0%
!! AATGATTTGAATAATTCAAA+TGG + Chr7:72566581-72566600 MsG0780040061.01.T01:CDS 15.0%
!! ATGATTTGAATAATTCAAAT+GGG + Chr7:72566582-72566601 MsG0780040061.01.T01:CDS 15.0%
!! TTTACAAAATATTGTGAAAT+TGG + Chr7:72566763-72566782 MsG0780040061.01.T01:intron 15.0%
!!! AAAAATGTTATGTTTTTTGA+AGG - Chr7:72567033-72567052 None:intergenic 15.0%
!! GATTTCTATTATTCAAATCA+AGG - Chr7:72567061-72567080 None:intergenic 20.0%
!! TAATAATCTTCATAATGAAC+TGG + Chr7:72567380-72567399 MsG0780040061.01.T01:CDS 20.0%
!! TGAATAATAGAAATCATGAA+GGG + Chr7:72567066-72567085 MsG0780040061.01.T01:intron 20.0%
!! TTGAATAATAGAAATCATGA+AGG + Chr7:72567065-72567084 MsG0780040061.01.T01:intron 20.0%
!!! ACTAGTTTTTTGTATTTTGT+TGG + Chr7:72567103-72567122 MsG0780040061.01.T01:intron 20.0%
!!! ATTTATTTTATAGATGGACA+GGG + Chr7:72567305-72567324 MsG0780040061.01.T01:intron 20.0%
!!! GCATCAAATATTTTTCTAAA+AGG - Chr7:72566791-72566810 None:intergenic 20.0%
!!! TCCATTAATGTTTTAAATTG+CGG + Chr7:72566825-72566844 MsG0780040061.01.T01:intron 20.0%
!!! TTGCTTTTGTAATTTTGTTT+GGG + Chr7:72567165-72567184 MsG0780040061.01.T01:intron 20.0%
!!! TTTGAAAATGGATTCTTTAT+GGG + Chr7:72566191-72566210 MsG0780040061.01.T01:CDS 20.0%
! AAATTACAAAAGCAACAAGA+TGG - Chr7:72567160-72567179 None:intergenic 25.0%
! AATTATGATTCTGATGAGAA+TGG + Chr7:72566557-72566576 MsG0780040061.01.T01:CDS 25.0%
! ACAAAACATATGAATGTTGA+CGG - Chr7:72567788-72567807 None:intergenic 25.0%
! ATTATGATTCTGATGAGAAT+GGG + Chr7:72566558-72566577 MsG0780040061.01.T01:CDS 25.0%
! CAAAAAATTGTTGTCAAATG+CGG + Chr7:72566879-72566898 MsG0780040061.01.T01:intron 25.0%
! CTTAAAATAACTTCGCATTA+AGG - Chr7:72567566-72567585 None:intergenic 25.0%
! TCAATGGCATTTCTAATTAT+AGG - Chr7:72566985-72567004 None:intergenic 25.0%
!! AATGTTGTTGCTTATGTTAA+TGG + Chr7:72567204-72567223 MsG0780040061.01.T01:intron 25.0%
!! ACCGCAATTTAAAACATTAA+TGG - Chr7:72566829-72566848 None:intergenic 25.0%
!! GTTTGAAAATGGATTCTTTA+TGG + Chr7:72566190-72566209 MsG0780040061.01.T01:CDS 25.0%
!!! ACCATATACTTGCTAATTTT+AGG - Chr7:72566734-72566753 None:intergenic 25.0%
!!! CATTTATTTTATAGATGGAC+AGG + Chr7:72567304-72567323 MsG0780040061.01.T01:intron 25.0%
!!! GTTGCTTTTGTAATTTTGTT+TGG + Chr7:72567164-72567183 MsG0780040061.01.T01:intron 25.0%
!!! TGCTTTTGTAATTTTGTTTG+GGG + Chr7:72567166-72567185 MsG0780040061.01.T01:intron 25.0%
!!! TTCTTGTTTCTGAAATTTAC+AGG + Chr7:72567735-72567754 MsG0780040061.01.T01:intron 25.0%
!!! TTTTGTGACAATAATTTGCA+TGG - Chr7:72567622-72567641 None:intergenic 25.0%
AAATAGAACGTGCTAATGTT+AGG + Chr7:72567266-72567285 MsG0780040061.01.T01:intron 30.0%
AAGGCAAACAAAAATTACCT+TGG - Chr7:72567547-72567566 None:intergenic 30.0%
AATTATTTGGACGGTAATTG+AGG + Chr7:72567698-72567717 MsG0780040061.01.T01:intron 30.0%
ACATGGCAAATAACTGAATA+AGG + Chr7:72567662-72567681 MsG0780040061.01.T01:intron 30.0%
AGGCAAACAAAAATTACCTT+GGG - Chr7:72567546-72567565 None:intergenic 30.0%
ATGATAGGTTGTATATGCTT+AGG + Chr7:72566699-72566718 MsG0780040061.01.T01:CDS 30.0%
CATGGCAAATAACTGAATAA+GGG + Chr7:72567663-72567682 MsG0780040061.01.T01:intron 30.0%
CATGTTACTGGTATAGATAA+AGG - Chr7:72567647-72567666 None:intergenic 30.0%
CTTTATCTATACCAGTAACA+TGG + Chr7:72567645-72567664 MsG0780040061.01.T01:intron 30.0%
GCCTAAAATTAGCAAGTATA+TGG + Chr7:72566730-72566749 MsG0780040061.01.T01:CDS 30.0%
GTACGTTGATGCAAATTATT+TGG + Chr7:72567685-72567704 MsG0780040061.01.T01:intron 30.0%
GTTGATGCAAATTATTTGGA+CGG + Chr7:72567689-72567708 MsG0780040061.01.T01:intron 30.0%
!! TTGTTTCTGAAATTTACAGG+TGG + Chr7:72567738-72567757 MsG0780040061.01.T01:intron 30.0%
CAAAAATTACCTTGGGAGAT+TGG - Chr7:72567539-72567558 None:intergenic 35.0%
TATCATTGAGTTTCTTCCTC+CGG - Chr7:72566685-72566704 None:intergenic 35.0%
TCAGTTATTTGCCATGTTAC+TGG - Chr7:72567659-72567678 None:intergenic 35.0%
! TCAAATTCCCCTGTTTTCAT+GGG + Chr7:72566227-72566246 MsG0780040061.01.T01:CDS 35.0%
! TGATGATGATGATGTTGTTG+TGG - Chr7:72566362-72566381 None:intergenic 35.0%
! TTCAAATTCCCCTGTTTTCA+TGG + Chr7:72566226-72566245 MsG0780040061.01.T01:CDS 35.0%
! TTTTTATGTGACCGCGATTA+AGG - Chr7:72566914-72566933 None:intergenic 35.0%
!! ACTTTTGCTATCTACCATGA+GGG + Chr7:72567822-72567841 MsG0780040061.01.T01:CDS 35.0%
!! ATAGAAAACGAAGCACTGAA+AGG - Chr7:72566314-72566333 None:intergenic 35.0%
!! GGCTGTTATCAGTTTTTCAA+TGG + Chr7:72567876-72567895 MsG0780040061.01.T01:CDS 35.0%
ACACAAAGCAAATGCAACAC+TGG - Chr7:72567230-72567249 None:intergenic 40.0%
ACAGGTGGAAGTTAGAGTAA+GGG + Chr7:72567753-72567772 MsG0780040061.01.T01:intron 40.0%
AGATGCAGTTGACTACTTGA+AGG + Chr7:72567341-72567360 MsG0780040061.01.T01:CDS 40.0%
AGGAAACTCAGAAGCTGAAA+GGG - Chr7:72566258-72566277 None:intergenic 40.0%
ATGGTAGATAGCAAAAGTCC+TGG - Chr7:72567820-72567839 None:intergenic 40.0%
GAACAAGAAGAAGAGAAAGG+TGG + Chr7:72566466-72566485 MsG0780040061.01.T01:CDS 40.0%
GCTTCCTGCAAAGAATTTGA+TGG + Chr7:72566649-72566668 MsG0780040061.01.T01:CDS 40.0%
GGAGGAAGAAACTCAATGAT+AGG + Chr7:72566684-72566703 MsG0780040061.01.T01:CDS 40.0%
GTCAAAGAGGATCTATATCC+CGG + Chr7:72567492-72567511 MsG0780040061.01.T01:CDS 40.0%
GTTTGGGGAATCTAGTGTTT+GGG + Chr7:72567181-72567200 MsG0780040061.01.T01:intron 40.0%
TACAGGTGGAAGTTAGAGTA+AGG + Chr7:72567752-72567771 MsG0780040061.01.T01:intron 40.0%
TCAAATGGGACTGTTGTTAC+TGG + Chr7:72566596-72566615 MsG0780040061.01.T01:CDS 40.0%
TCAGCCATCAAATTCTTTGC+AGG - Chr7:72566656-72566675 None:intergenic 40.0%
TGGAAGTTAGAGTAAGGGAA+GGG + Chr7:72567758-72567777 MsG0780040061.01.T01:CDS 40.0%
TGTTTGGGGAATCTAGTGTT+TGG + Chr7:72567180-72567199 MsG0780040061.01.T01:intron 40.0%
TTAAATTGCGGTCGCAGTAA+TGG + Chr7:72566837-72566856 MsG0780040061.01.T01:intron 40.0%
! CAAAGAATTTGATGGCTGAG+AGG + Chr7:72566657-72566676 MsG0780040061.01.T01:CDS 40.0%
! TGATGATGTTGTTGTGGTTG+TGG - Chr7:72566356-72566375 None:intergenic 40.0%
!! GACTTTTGCTATCTACCATG+AGG + Chr7:72567821-72567840 MsG0780040061.01.T01:CDS 40.0%
!!! ACCTTGGGAGATTGGTTTTT+GGG - Chr7:72567531-72567550 None:intergenic 40.0%
!!! TACCTTGGGAGATTGGTTTT+TGG - Chr7:72567532-72567551 None:intergenic 40.0%
AAGGTTATCCAAAGCCCTCA+TGG - Chr7:72567839-72567858 None:intergenic 45.0%
AATGGGACTGTTGTTACTGG+TGG + Chr7:72566599-72566618 MsG0780040061.01.T01:CDS 45.0%
AGAAGGGGAAGAAGAAGAAG+GGG + Chr7:72566627-72566646 MsG0780040061.01.T01:CDS 45.0%
ATGGACAGGGCTTCAATACT+CGG + Chr7:72567318-72567337 MsG0780040061.01.T01:CDS 45.0%
CAGAAGGGGAAGAAGAAGAA+GGG + Chr7:72566626-72566645 MsG0780040061.01.T01:CDS 45.0%
GAGGAAACTCAGAAGCTGAA+AGG - Chr7:72566259-72566278 None:intergenic 45.0%
GGCATCACACAAGCATTTCA+AGG - Chr7:72567139-72567158 None:intergenic 45.0%
GGGGAACAAGAAGAAGAGAA+AGG + Chr7:72566463-72566482 MsG0780040061.01.T01:CDS 45.0%
GTGGAAGTTAGAGTAAGGGA+AGG + Chr7:72567757-72567776 MsG0780040061.01.T01:CDS 45.0%
GTTACTGGTGGAGATCAGAA+GGG + Chr7:72566611-72566630 MsG0780040061.01.T01:CDS 45.0%
TCAGAAGGGGAAGAAGAAGA+AGG + Chr7:72566625-72566644 MsG0780040061.01.T01:CDS 45.0%
TCTCTTCTTCTTGTTCCCCA+CGG - Chr7:72566462-72566481 None:intergenic 45.0%
TGAAAGCTTGCACTTGCAGA+AGG - Chr7:72567435-72567454 None:intergenic 45.0%
TGTTACTGGTGGAGATCAGA+AGG + Chr7:72566610-72566629 MsG0780040061.01.T01:CDS 45.0%
TTACTGGTGGAGATCAGAAG+GGG + Chr7:72566612-72566631 MsG0780040061.01.T01:CDS 45.0%
! AATTCCCCTGTTTTCATGGG+TGG + Chr7:72566230-72566249 MsG0780040061.01.T01:CDS 45.0%
! AGATCCTCTTTGACTCGACA+GGG - Chr7:72567486-72567505 None:intergenic 45.0%
! ATGTTTTGTACTCGCAGACC+AGG + Chr7:72567799-72567818 MsG0780040061.01.T01:CDS 45.0%
! ATTCCCCTGTTTTCATGGGT+GGG + Chr7:72566231-72566250 MsG0780040061.01.T01:CDS 45.0%
! GGTTGATGTAGCCTTAATCG+CGG + Chr7:72566900-72566919 MsG0780040061.01.T01:intron 45.0%
! TAGATCCTCTTTGACTCGAC+AGG - Chr7:72567487-72567506 None:intergenic 45.0%
!! ATGAGGGCTTTGGATAACCT+TGG + Chr7:72567838-72567857 MsG0780040061.01.T01:CDS 45.0%
!! GAAAACGAAGCACTGAAAGG+TGG - Chr7:72566311-72566330 None:intergenic 45.0%
!! GGCTTTGGATAACCTTGGAT+TGG + Chr7:72567843-72567862 MsG0780040061.01.T01:CDS 45.0%
!!! CCTTGGGAGATTGGTTTTTG+GGG - Chr7:72567530-72567549 None:intergenic 45.0%
AGAGAAAGGTGGAGAAGAGC+TGG + Chr7:72566477-72566496 MsG0780040061.01.T01:CDS 50.0%
AGCTGGGAAGAAGAAGGAAG+TGG + Chr7:72566494-72566513 MsG0780040061.01.T01:CDS 50.0%
CCCCAAAAACCAATCTCCCA+AGG + Chr7:72567527-72567546 MsG0780040061.01.T01:CDS 50.0%
CCTGCTGAACATCCAATCCA+AGG - Chr7:72567858-72567877 None:intergenic 50.0%
GAACTGGAATCAACTCCACC+TGG + Chr7:72567396-72567415 MsG0780040061.01.T01:CDS 50.0%
GAAGAAGAAGGAAGTGGTGG+TGG + Chr7:72566500-72566519 MsG0780040061.01.T01:CDS 50.0%
GAGAAAGGTGGAGAAGAGCT+GGG + Chr7:72566478-72566497 MsG0780040061.01.T01:CDS 50.0%
GAGAAGAGCTGGGAAGAAGA+AGG + Chr7:72566488-72566507 MsG0780040061.01.T01:CDS 50.0%
GCTATCTACCATGAGGGCTT+TGG + Chr7:72567828-72567847 MsG0780040061.01.T01:CDS 50.0%
TCTTCCCTGTCGAGTCAAAG+AGG + Chr7:72567479-72567498 MsG0780040061.01.T01:CDS 50.0%
TGGGAAGAAGAAGGAAGTGG+TGG + Chr7:72566497-72566516 MsG0780040061.01.T01:CDS 50.0%
TGTGGTTGAGCTAGCTCAAG+AGG - Chr7:72566338-72566357 None:intergenic 50.0%
! CCTTGGATTGGATGTTCAGC+AGG + Chr7:72567855-72567874 MsG0780040061.01.T01:CDS 50.0%
! GCAGCATCGAGTTCAAGACT+CGG - Chr7:72566281-72566300 None:intergenic 50.0%
! TTGACTCGACAGGGAAGAGT+CGG - Chr7:72567477-72567496 None:intergenic 50.0%
! TTTGGGGCTTAGCAAGTCAC+CGG - Chr7:72567514-72567533 None:intergenic 50.0%
!! GAAGCACTGAAAGGTGGTAC+TGG - Chr7:72566305-72566324 None:intergenic 50.0%
ACTTGAAGGAGCTGCTGCAG+CGG + Chr7:72567355-72567374 MsG0780040061.01.T01:CDS 55.0%
AGGGACCCACCCATGAAAAC+AGG - Chr7:72566239-72566258 None:intergenic 55.0%
ATTCCGAGGTTGGAGACCGT+GGG + Chr7:72566443-72566462 MsG0780040061.01.T01:CDS 55.0%
GCATCGAGTTCAAGACTCGG+AGG - Chr7:72566278-72566297 None:intergenic 55.0%
GGACCCACCCATGAAAACAG+GGG - Chr7:72566237-72566256 None:intergenic 55.0%
GGGACCCACCCATGAAAACA+GGG - Chr7:72566238-72566257 None:intergenic 55.0%
TTGGGGCTTAGCAAGTCACC+GGG - Chr7:72567513-72567532 None:intergenic 55.0%
! ATTTGATGGCTGAGAGGCGC+CGG + Chr7:72566663-72566682 MsG0780040061.01.T01:CDS 55.0%
!! ACGCTGTTTCAGAAGCGTCG+TGG + Chr7:72566410-72566429 MsG0780040061.01.T01:CDS 55.0%
!! ACGCTTCTGAAACAGCGTCG+TGG - Chr7:72566408-72566427 None:intergenic 55.0%
!! CGCTGTTTCAGAAGCGTCGT+GGG + Chr7:72566411-72566430 MsG0780040061.01.T01:CDS 55.0%
!! CGCTTCTGAAACAGCGTCGT+GGG - Chr7:72566407-72566426 None:intergenic 55.0%
!! GAAGAAGGAAGTGGTGGTGG+TGG + Chr7:72566503-72566522 MsG0780040061.01.T01:CDS 55.0%
!! GCTGTTTCAGAAGCGTCGTG+GGG + Chr7:72566412-72566431 MsG0780040061.01.T01:CDS 55.0%
ACAGGGAAGAGTCGGTGGAG+TGG - Chr7:72567469-72567488 None:intergenic 60.0%
ACTCGACAGGGAAGAGTCGG+TGG - Chr7:72567474-72567493 None:intergenic 60.0%
CAGGGAAGAGTCGGTGGAGT+GGG - Chr7:72567468-72567487 None:intergenic 60.0%
GAAGGTTGCAGCAGTGAGCC+AGG - Chr7:72567417-72567436 None:intergenic 60.0%
GATTCCGAGGTTGGAGACCG+TGG + Chr7:72566442-72566461 MsG0780040061.01.T01:CDS 60.0%
GTCGGTGGAGTGGGTGTCAA+CGG - Chr7:72567459-72567478 None:intergenic 60.0%
TCGGTGGAGTGGGTGTCAAC+GGG - Chr7:72567458-72567477 None:intergenic 60.0%
TTCCCCACGGTCTCCAACCT+CGG - Chr7:72566449-72566468 None:intergenic 60.0%
TTCCGAGGTTGGAGACCGTG+GGG + Chr7:72566444-72566463 MsG0780040061.01.T01:CDS 60.0%
! GGCGTTGGAGATTCCGAGGT+TGG + Chr7:72566433-72566452 MsG0780040061.01.T01:CDS 60.0%
!! GAAGGAAGTGGTGGTGGTGG+TGG + Chr7:72566506-72566525 MsG0780040061.01.T01:CDS 60.0%
GGTTGCAGCAGTGAGCCAGG+TGG - Chr7:72567414-72567433 None:intergenic 65.0%
!! GTGGGGCGTTGGAGATTCCG+AGG + Chr7:72566429-72566448 MsG0780040061.01.T01:CDS 65.0%
!! TCAGAAGCGTCGTGGGGCGT+TGG + Chr7:72566418-72566437 MsG0780040061.01.T01:CDS 65.0%
!! TGATGGCTGAGAGGCGCCGG+AGG + Chr7:72566666-72566685 MsG0780040061.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 72566185 72567909 72566185 ID=MsG0780040061.01;Name=MsG0780040061.01
Chr7 mRNA 72566185 72567909 72566185 ID=MsG0780040061.01.T01;Parent=MsG0780040061.01;Name=MsG0780040061.01.T01;_AED=0.36;_eAED=0.36;_QI=0|0|0|1|1|1|3|0|316
Chr7 exon 72566185 72566751 72566185 ID=MsG0780040061.01.T01:exon:12828;Parent=MsG0780040061.01.T01
Chr7 exon 72567318 72567548 72567318 ID=MsG0780040061.01.T01:exon:12829;Parent=MsG0780040061.01.T01
Chr7 exon 72567757 72567909 72567757 ID=MsG0780040061.01.T01:exon:12830;Parent=MsG0780040061.01.T01
Chr7 CDS 72566185 72566751 72566185 ID=MsG0780040061.01.T01:cds;Parent=MsG0780040061.01.T01
Chr7 CDS 72567318 72567548 72567318 ID=MsG0780040061.01.T01:cds;Parent=MsG0780040061.01.T01
Chr7 CDS 72567757 72567909 72567757 ID=MsG0780040061.01.T01:cds;Parent=MsG0780040061.01.T01
Gene Sequence

>MsG0780040061.01.T01

ATGGGGTTTGAAAATGGATTCTTTATGGGAAACAACAACACTTCAAATTCCCCTGTTTTCATGGGTGGGTCCCTTTCAGCTTCTGAGTTTCCTCCGAGTCTTGAACTCGATGCTGCTCCAGTACCACCTTTCAGTGCTTCGTTTTCTATGCCTCTTGAGCTAGCTCAACCACAACCACAACAACATCATCATCATCATCAGCAGCAACAACAACAACAACCCACGACGCTGTTTCAGAAGCGTCGTGGGGCGTTGGAGATTCCGAGGTTGGAGACCGTGGGGAACAAGAAGAAGAGAAAGGTGGAGAAGAGCTGGGAAGAAGAAGGAAGTGGTGGTGGTGGTGGTGATGATGTTGATGATTTTTCTGAATTGAATTATGATTCTGATGAGAATGGGAATGATTTGAATAATTCAAATGGGACTGTTGTTACTGGTGGAGATCAGAAGGGGAAGAAGAAGAAGGGGCTTCCTGCAAAGAATTTGATGGCTGAGAGGCGCCGGAGGAAGAAACTCAATGATAGGTTGTATATGCTTAGGTCTGTTGTGCCTAAAATTAGCAAGTATATGATGGACAGGGCTTCAATACTCGGAGATGCAGTTGACTACTTGAAGGAGCTGCTGCAGCGGATTAATAATCTTCATAATGAACTGGAATCAACTCCACCTGGCTCACTGCTGCAACCTTCTGCAAGTGCAAGCTTTCACCCGTTGACACCCACTCCACCGACTCTTCCCTGTCGAGTCAAAGAGGATCTATATCCCGGTGACTTGCTAAGCCCCAAAAACCAATCTCCCAAGGTGGAAGTTAGAGTAAGGGAAGGGAGAGCCGTCAACATTCATATGTTTTGTACTCGCAGACCAGGACTTTTGCTATCTACCATGAGGGCTTTGGATAACCTTGGATTGGATGTTCAGCAGGCTGTTATCAGTTTTTCAATGGCTTTGCATTAG

Protein sequence

>MsG0780040061.01.T01

MGFENGFFMGNNNTSNSPVFMGGSLSASEFPPSLELDAAPVPPFSASFSMPLELAQPQPQQHHHHHQQQQQQQPTTLFQKRRGALEIPRLETVGNKKKRKVEKSWEEEGSGGGGGDDVDDFSELNYDSDENGNDLNNSNGTVVTGGDQKGKKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKYMMDRASILGDAVDYLKELLQRINNLHNELESTPPGSLLQPSASASFHPLTPTPPTLPCRVKEDLYPGDLLSPKNQSPKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISFSMALH*