AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005349.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005349.01.T01 MTR_1g097610 95.890 511 17 2 1 507 1 511 0.0 984
MsG0180005349.01.T01 MTR_2g033020 29.756 205 133 5 274 472 158 357 3.87e-20 92.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005349.01.T01 AT1G71720 56.883 494 168 10 26 506 37 498 0.0 520
MsG0180005349.01.T01 AT1G71720 57.447 423 139 7 26 438 37 428 6.44e-155 448
MsG0180005349.01.T01 AT5G30510 31.707 205 128 5 274 472 165 363 2.12e-23 102

Find 113 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCATACAGAGAGTATTTA+TGG 0.166666 1:-90632339 MsG0180005349.01.T01:intron
GTTGTTGGTGTTGTTGTTTC+AGG 0.170222 1:-90636538 MsG0180005349.01.T01:CDS
TCTATAATGAACACCTAAAA+TGG 0.219855 1:+90631849 None:intergenic
CCTATTGTCTCTACAAAATT+AGG 0.227064 1:-90632272 MsG0180005349.01.T01:CDS
CATTGTTCTCCTATGTTGTT+TGG 0.236176 1:-90632008 MsG0180005349.01.T01:three_prime_UTR
AGGAGTGGAAAGAACAATAT+TGG 0.289687 1:+90636963 None:intergenic
GAACAAGCCGTCACCTGTTT+TGG 0.299137 1:-90636800 MsG0180005349.01.T01:CDS
GCATGGGGCTATAAAGTATT+TGG 0.301852 1:-90631974 MsG0180005349.01.T01:three_prime_UTR
GCAACAAGAAAGAAATTTAA+AGG 0.309774 1:+90631908 None:intergenic
GGATGAAGTTGAAGAATAAA+TGG 0.339304 1:+90637063 None:intergenic
GTTTCTACAACAGGCCTTCC+TGG 0.339830 1:+90636322 None:intergenic
GCCTTCTGAAGAGGAAGCTT+TGG 0.354245 1:-90636755 MsG0180005349.01.T01:CDS
GACCGTTGATTTCTACTAGA+AGG 0.354808 1:-90636252 MsG0180005349.01.T01:CDS
TCCTTTGAATGGTAAAGAAA+TGG 0.358874 1:-90636446 MsG0180005349.01.T01:CDS
GGAAGGCCTGTTGTAGAAAC+TGG 0.360206 1:-90636319 MsG0180005349.01.T01:CDS
ATCTTAATTTGTGCTCCATA+TGG 0.366503 1:+90634712 None:intergenic
GGCTCTTTCGTCGGATTGCT+TGG 0.369347 1:-90636231 MsG0180005349.01.T01:CDS
ACAACAAAATCACCAGGTTT+TGG 0.371047 1:+90636556 None:intergenic
TTCTTTGGTGCTTAGTGAAA+AGG 0.372446 1:-90634926 MsG0180005349.01.T01:CDS
TCTTGTCACAAGCTCAGCTT+TGG 0.373548 1:+90635144 None:intergenic
ATGAAGCACTTTATGCAAAC+TGG 0.377438 1:-90632217 MsG0180005349.01.T01:CDS
TAAAACCTCAGCAAACAAAA+TGG 0.381979 1:+90636294 None:intergenic
AACTTGAATTTCATCATCAA+TGG 0.393250 1:+90636831 None:intergenic
TATAGATAGATTCATATAGT+TGG 0.399544 1:-90631832 MsG0180005349.01.T01:three_prime_UTR
TATGGAGCACAAATTAAGAT+TGG 0.400360 1:-90634709 MsG0180005349.01.T01:CDS
AAAGTCCAGGTTCACTTTCA+AGG 0.415620 1:+90632455 None:intergenic
ATTGTTCTCCTATGTTGTTT+GGG 0.417926 1:-90632007 MsG0180005349.01.T01:three_prime_UTR
TCCATCTCAACTTCCAAAAC+AGG 0.419736 1:+90636787 None:intergenic
CACTTTATGCAAACTGGAAG+TGG 0.420539 1:-90632211 MsG0180005349.01.T01:CDS
AAGGAAGTGCTTCCTTTGAA+TGG 0.425729 1:-90636457 MsG0180005349.01.T01:CDS
CGGCAAAGCACTAGTTGGTA+AGG 0.432883 1:+90632247 None:intergenic
ATGGTTCCAGTTTCTACAAC+AGG 0.436694 1:+90636313 None:intergenic
GGAGTGGAAAGAACAATATT+GGG 0.445067 1:+90636964 None:intergenic
AAAAGAAGGAGAAGATAAGA+AGG 0.446272 1:-90636599 MsG0180005349.01.T01:CDS
AGATAATGAGGTATTAGAAC+TGG 0.450849 1:-90636677 MsG0180005349.01.T01:CDS
AGAATTACAGAGTGGAATAC+TGG 0.452658 1:-90635290 MsG0180005349.01.T01:CDS
TCTTTGGTGCTTAGTGAAAA+GGG 0.453525 1:-90634925 MsG0180005349.01.T01:CDS
GCTTAGTGAAAAGGGAGCTT+GGG 0.468410 1:-90634917 MsG0180005349.01.T01:intron
CTCCGTTGATGAGAAGGTTA+AGG 0.469591 1:-90632832 MsG0180005349.01.T01:CDS
TGCTTAGTGAAAAGGGAGCT+TGG 0.478307 1:-90634918 MsG0180005349.01.T01:CDS
GAGGTTTCAAGTGATTTAGC+TGG 0.478592 1:-90636859 MsG0180005349.01.T01:CDS
CTTAAATGGCATGTCTGCCA+TGG 0.480958 1:+90632087 None:intergenic
ATTGTTCTTTCCACTCCTCA+TGG 0.483191 1:-90636958 MsG0180005349.01.T01:CDS
TTTACGGTTCAAGGGAAGAT+GGG 0.487575 1:-90636385 MsG0180005349.01.T01:CDS
ATGGAGCACAAATTAAGATT+GGG 0.487763 1:-90634708 MsG0180005349.01.T01:CDS
ATTCAAAGGAAGCACTTCCT+TGG 0.487899 1:+90636459 None:intergenic
TGATTTCTTGCTGAAAATGA+AGG 0.488495 1:+90637008 None:intergenic
GGAGTTGCAGTTGAAGCATA+AGG 0.494734 1:+90637029 None:intergenic
TCAAACGGCAAAGCACTAGT+TGG 0.498148 1:+90632242 None:intergenic
ATGAGTGCAGCATCAGTGCC+AGG 0.498555 1:-90636340 MsG0180005349.01.T01:CDS
CTTGTCACAAGCTCAGCTTT+GGG 0.498895 1:+90635145 None:intergenic
TTACAACTTGGATACTTCAC+AGG 0.503212 1:+90631650 None:intergenic
CTGGTGAGCCATGCAACATA+AGG 0.507604 1:+90632112 None:intergenic
GCCGCCCTTGAAAGTGAACC+TGG 0.508285 1:-90632460 MsG0180005349.01.T01:CDS
CTACTAGAAGGCTCTTTCGT+CGG 0.515227 1:-90636240 MsG0180005349.01.T01:CDS
TCCATTTCTTTACCATTCAA+AGG 0.525558 1:+90636445 None:intergenic
AAGTCCAGGTTCACTTTCAA+GGG 0.528592 1:+90632456 None:intergenic
AGACCTCAATCGTTGTTAGC+AGG 0.530608 1:+90635264 None:intergenic
CGTACTCTCCGTTGATGAGA+AGG 0.532205 1:-90632838 MsG0180005349.01.T01:CDS
AACAAGCTTGATGTAAATGT+TGG 0.533528 1:-90636508 MsG0180005349.01.T01:CDS
GTTTGGGCACATACAGAGCA+TGG 0.536874 1:-90631991 MsG0180005349.01.T01:three_prime_UTR
TCAGAGAACCTTATGTTGCA+TGG 0.538644 1:-90632120 MsG0180005349.01.T01:three_prime_UTR
GCTTCACCACTCTGAGGTCG+AGG 0.541768 1:+90632045 None:intergenic
ATTTATGGAAGCTGATATGA+TGG 0.544898 1:-90632324 MsG0180005349.01.T01:CDS
GCCAAAGCTTCCTCTTCAGA+AGG 0.545333 1:+90636754 None:intergenic
TTTGGGCACATACAGAGCAT+GGG 0.547339 1:-90631990 MsG0180005349.01.T01:three_prime_UTR
AATGTTGGAGCAGATTTACT+AGG 0.550877 1:-90636493 MsG0180005349.01.T01:CDS
TTTGTAGAGACAATAGGAGG+AGG 0.554599 1:+90632278 None:intergenic
TCTGTAATTCTAACCTCGAT+AGG 0.555447 1:+90635302 None:intergenic
TAGTAAAGATTATGTGAAGG+AGG 0.556511 1:-90636707 MsG0180005349.01.T01:CDS
TTTAGAGCAAAACTTGAAGT+GGG 0.556785 1:+90636897 None:intergenic
TGGCATGTCTGCCATGGGAC+TGG 0.560834 1:+90632093 None:intergenic
ATAATGAACACCTAAAATGG+AGG 0.565677 1:+90631852 None:intergenic
ACGTGATTACAATTACAACT+TGG 0.567461 1:+90631638 None:intergenic
GGAGGTTGACGAAGATAATG+AGG 0.568457 1:-90636689 MsG0180005349.01.T01:CDS
TAATGAACACCTAAAATGGA+GGG 0.568819 1:+90631853 None:intergenic
TTAAATGGCATGTCTGCCAT+GGG 0.575229 1:+90632088 None:intergenic
ACAAGAGAAGCCTTCTGAAG+AGG 0.577741 1:-90636764 MsG0180005349.01.T01:CDS
TCACAAGCTCAGCTTTGGGT+AGG 0.577775 1:+90635149 None:intergenic
ATAGTTGGATGTAAATTCTG+AGG 0.578855 1:-90631817 MsG0180005349.01.T01:three_prime_UTR
AACAATTGAACCATGAGGAG+TGG 0.579544 1:+90636948 None:intergenic
TGTATGTGCCCAAACAACAT+AGG 0.587861 1:+90631999 None:intergenic
GAAAAGGCATATCTTCGTGA+AGG 0.597129 1:-90634769 MsG0180005349.01.T01:CDS
TCAACTTCCAAAACAGGTGA+CGG 0.599928 1:+90636793 None:intergenic
GAGTACTATGAGCCAAAACC+TGG 0.601150 1:-90636568 MsG0180005349.01.T01:CDS
AGCCTTAACCTTCTCATCAA+CGG 0.602910 1:+90632830 None:intergenic
TGCATGGCTCACCAGTCCCA+TGG 0.604849 1:-90632104 MsG0180005349.01.T01:three_prime_UTR
TCCAGGTTCACTTTCAAGGG+CGG 0.605234 1:+90632459 None:intergenic
AGGTAGTAAAGATTATGTGA+AGG 0.610501 1:-90636710 MsG0180005349.01.T01:CDS
GTGCAGCATCAGTGCCAGGA+AGG 0.618214 1:-90636336 MsG0180005349.01.T01:CDS
AGGTTAAGGCTCTTGTTGTG+AGG 0.619077 1:-90632818 MsG0180005349.01.T01:CDS
AATGAACACCTAAAATGGAG+GGG 0.622669 1:+90631854 None:intergenic
TAGTTGGATGTAAATTCTGA+GGG 0.623285 1:-90631816 MsG0180005349.01.T01:three_prime_UTR
GGCAAAGCACTAGTTGGTAA+GGG 0.627922 1:+90632248 None:intergenic
AAGCATAAGGAAGAATTACA+AGG 0.632192 1:+90637042 None:intergenic
TGGCCTGCTAACAACGATTG+AGG 0.632735 1:-90635267 MsG0180005349.01.T01:intron
AAAAGGCATATCTTCGTGAA+GGG 0.634782 1:-90634768 MsG0180005349.01.T01:CDS
TTTGTTATGTGATGTGAACA+AGG 0.648082 1:-90636419 MsG0180005349.01.T01:CDS
AGCCTTCTAGTAGAAATCAA+CGG 0.649854 1:+90636250 None:intergenic
TTGGGCACATACAGAGCATG+GGG 0.650861 1:-90631989 MsG0180005349.01.T01:three_prime_UTR
AGATTGGGAAAACTAACAGA+AGG 0.651020 1:-90634693 MsG0180005349.01.T01:intron
TCACCACTCTGAGGTCGAGG+AGG 0.652213 1:+90632048 None:intergenic
ACTAGGTACAATGTTAACCA+AGG 0.652350 1:-90636476 MsG0180005349.01.T01:CDS
TTAGAAACAATTGAACCATG+AGG 0.654840 1:+90636943 None:intergenic
ATGTGATGTGAACAAGGATG+CGG 0.659417 1:-90636413 MsG0180005349.01.T01:CDS
ACACCAACAACAAAATCACC+AGG 0.669393 1:+90636550 None:intergenic
TACAACTTGGATACTTCACA+GGG 0.672103 1:+90631651 None:intergenic
ACAGCTCAATGAACCTATCG+AGG 0.680086 1:-90635315 MsG0180005349.01.T01:CDS
AAAAGATGGTGTGAGTGATG+AGG 0.692251 1:-90636641 MsG0180005349.01.T01:CDS
ATTACAGAGTGGAATACTGG+TGG 0.692449 1:-90635287 MsG0180005349.01.T01:CDS
GAGCCTCCTCGACCTCAGAG+TGG 0.703238 1:-90632051 MsG0180005349.01.T01:three_prime_UTR
TCCCCGATAAAATCTCTCTG+AGG 0.706627 1:-90632788 MsG0180005349.01.T01:intron
TCGAGGTTAGAATTACAGAG+TGG 0.742925 1:-90635298 MsG0180005349.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAATAAAAAAAA+AGG + Chr1:90636815-90636834 None:intergenic 0.0%
!! AATTTCAATATTATAAATCA+AGG - Chr1:90633080-90633099 MsG0180005349.01.T01:intron 10.0%
!! ATACTGAAATTTAGTAAAAA+AGG - Chr1:90633207-90633226 MsG0180005349.01.T01:intron 15.0%
!!! AAATTGAGTTATATTTTCAA+GGG + Chr1:90634060-90634079 None:intergenic 15.0%
!!! AAGATTAATGTTTTAAAAAC+CGG - Chr1:90634382-90634401 MsG0180005349.01.T01:intron 15.0%
!!! TAAGTTTTAGTTGTTAATTT+TGG - Chr1:90635721-90635740 MsG0180005349.01.T01:intron 15.0%
!! AAACAAAGATAGTAAAGAAA+AGG + Chr1:90635566-90635585 None:intergenic 20.0%
!! ATTAGCAAGAGATTATTATA+AGG + Chr1:90633682-90633701 None:intergenic 20.0%
!! TAATAAATGGAGAACAAATA+TGG + Chr1:90632683-90632702 None:intergenic 20.0%
!! TATAGATAGATTCATATAGT+TGG - Chr1:90636866-90636885 MsG0180005349.01.T01:CDS 20.0%
!! TCCTATTAAAATTTCTTCTA+TGG - Chr1:90636304-90636323 MsG0180005349.01.T01:CDS 20.0%
!!! AACATAAATTTCAAGTCAAT+GGG + Chr1:90633462-90633481 None:intergenic 20.0%
!!! AATCTGATCTTTTTAATGTT+TGG - Chr1:90633350-90633369 MsG0180005349.01.T01:intron 20.0%
!!! ACCATAGAAGAAATTTTAAT+AGG + Chr1:90636308-90636327 None:intergenic 20.0%
!!! ACTTTTTCTTTCAAATAAAG+AGG - Chr1:90636261-90636280 MsG0180005349.01.T01:CDS 20.0%
!!! ATATGGAAAGATCTTTTTTA+CGG + Chr1:90633972-90633991 None:intergenic 20.0%
!!! ATCTGATCTTTTTAATGTTT+GGG - Chr1:90633351-90633370 MsG0180005349.01.T01:intron 20.0%
!!! CAAATTGAGTTATATTTTCA+AGG + Chr1:90634061-90634080 None:intergenic 20.0%
!!! CCTTTGAAAAACTTAAAAAA+AGG + Chr1:90631971-90631990 None:intergenic 20.0%
!!! CCTTTTTTTAAGTTTTTCAA+AGG - Chr1:90631968-90631987 MsG0180005349.01.T01:three_prime_UTR 20.0%
!!! CTTCATATTTTCTTCTTAAA+TGG + Chr1:90636628-90636647 None:intergenic 20.0%
!!! GAAATTTGGCATAATTTTAT+AGG - Chr1:90634671-90634690 MsG0180005349.01.T01:intron 20.0%
!!! GCATCTAAAACTTTTTTAAT+GGG - Chr1:90634280-90634299 MsG0180005349.01.T01:intron 20.0%
!!! TGCATCTAAAACTTTTTTAA+TGG - Chr1:90634279-90634298 MsG0180005349.01.T01:intron 20.0%
!!! TTTGTCATTTCATATCAAAT+TGG - Chr1:90633157-90633176 MsG0180005349.01.T01:intron 20.0%
! AAAGAAGATGAAGAAAAAGA+AGG - Chr1:90632085-90632104 MsG0180005349.01.T01:three_prime_UTR 25.0%
! AACTTGAATTTCATCATCAA+TGG + Chr1:90631870-90631889 None:intergenic 25.0%
! AAGAAAATTATGCAGAAACA+AGG + Chr1:90634745-90634764 None:intergenic 25.0%
! AATTTGGCATTGCTAATAAA+TGG + Chr1:90632696-90632715 None:intergenic 25.0%
! ACATCTACTAAACTAAACAT+TGG + Chr1:90632543-90632562 None:intergenic 25.0%
! ACTATATAGATAACAATGAC+AGG + Chr1:90634216-90634235 None:intergenic 25.0%
! AGAAAATTATGCAGAAACAA+GGG + Chr1:90634744-90634763 None:intergenic 25.0%
! AGATGAAGCAAAAAATTCTT+TGG - Chr1:90633757-90633776 MsG0180005349.01.T01:intron 25.0%
! ATTTACTCAAATAATGACAC+AGG + Chr1:90633485-90633504 None:intergenic 25.0%
! ATTTATTAGCAATGCCAAAT+TGG - Chr1:90632695-90632714 MsG0180005349.01.T01:intron 25.0%
! CATTTCATATCAAATTGGTA+GGG - Chr1:90633162-90633181 MsG0180005349.01.T01:intron 25.0%
! CGATTGTTAAACTTTGAATT+TGG - Chr1:90634147-90634166 MsG0180005349.01.T01:intron 25.0%
! CTGATTCTTCAAAAAAAACT+GGG - Chr1:90635298-90635317 MsG0180005349.01.T01:CDS 25.0%
! CTGTTACAAAACAAACTTAA+AGG - Chr1:90635431-90635450 MsG0180005349.01.T01:intron 25.0%
! CTGTTACAAAACAAACTTAA+AGG + Chr1:90635450-90635431 None:intergenic 25.0%
! GAAAATATAGATAATGCACT+AGG - Chr1:90634102-90634121 MsG0180005349.01.T01:intron 25.0%
! GAGTTGAGTATATTTATCAT+CGG - Chr1:90635153-90635172 MsG0180005349.01.T01:CDS 25.0%
! GATAAACATTTATCCAAACA+GGG + Chr1:90632754-90632773 None:intergenic 25.0%
! GCAACAAGAAAGAAATTTAA+AGG + Chr1:90636793-90636812 None:intergenic 25.0%
! GTAAAAAAGATCTTTCCATA+TGG - Chr1:90633971-90633990 MsG0180005349.01.T01:intron 25.0%
! GTTACAAACATCAAACTTAA+AGG - Chr1:90635462-90635481 MsG0180005349.01.T01:intron 25.0%
! GTTTGATGTTTGTAACATAT+AGG + Chr1:90635458-90635477 None:intergenic 25.0%
! TACTAAACTAAACATTGGAT+AGG + Chr1:90632538-90632557 None:intergenic 25.0%
! TATGAATAAAAATGGAGTCA+GGG + Chr1:90635034-90635053 None:intergenic 25.0%
! TCATTTCATATCAAATTGGT+AGG - Chr1:90633161-90633180 MsG0180005349.01.T01:intron 25.0%
! TCTATAATGAACACCTAAAA+TGG + Chr1:90636852-90636871 None:intergenic 25.0%
! TGATAAACATTTATCCAAAC+AGG + Chr1:90632755-90632774 None:intergenic 25.0%
! TGTCATTGTTATCTATATAG+TGG - Chr1:90634215-90634234 MsG0180005349.01.T01:intron 25.0%
! TTAACATAAACAAATGAGTC+AGG - Chr1:90636011-90636030 MsG0180005349.01.T01:intron 25.0%
! TTAACTCTATAGTAATGAAC+TGG - Chr1:90634190-90634209 MsG0180005349.01.T01:intron 25.0%
! TTATTTGAAAGAAAAAGTCC+AGG + Chr1:90636259-90636278 None:intergenic 25.0%
! TTGTATATAAAAAGCAAGCA+GGG + Chr1:90634615-90634634 None:intergenic 25.0%
! TTGTTAAACTTTGAATTTGG+TGG - Chr1:90634150-90634169 MsG0180005349.01.T01:intron 25.0%
! TTGTTTATGTTAACCAAACA+AGG + Chr1:90636004-90636023 None:intergenic 25.0%
!! AACTTCCTTTTGTAATTGTT+GGG - Chr1:90635951-90635970 MsG0180005349.01.T01:intron 25.0%
!! AATCAAATTTTGAATCTTGG+AGG + Chr1:90636086-90636105 None:intergenic 25.0%
!! ACGAATCAAATTTTGAATCT+TGG + Chr1:90636089-90636108 None:intergenic 25.0%
!! AGCTTTGGTATGAATAAAAA+TGG + Chr1:90635042-90635061 None:intergenic 25.0%
!! GAACATAAATTTCAAGTCAA+TGG + Chr1:90633463-90633482 None:intergenic 25.0%
!! GTTTCTGCATAATTTTCTTT+AGG - Chr1:90634746-90634765 MsG0180005349.01.T01:CDS 25.0%
!! TAACTTCCTTTTGTAATTGT+TGG - Chr1:90635950-90635969 MsG0180005349.01.T01:intron 25.0%
!! TATGCCAAATTTCTCATTTT+GGG + Chr1:90634664-90634683 None:intergenic 25.0%
!! TATTTAGCAAACAGTAGTTT+TGG - Chr1:90632637-90632656 MsG0180005349.01.T01:intron 25.0%
!! TCAAAGTTTAACAATCGTTT+TGG + Chr1:90634144-90634163 None:intergenic 25.0%
!! TCCATCTTTAATTTATGAGT+CGG - Chr1:90632578-90632597 MsG0180005349.01.T01:intron 25.0%
!! TCTGATCTTTTTAATGTTTG+GGG - Chr1:90633352-90633371 MsG0180005349.01.T01:intron 25.0%
!! TGCTTATTTCTTCATGAATT+CGG - Chr1:90633504-90633523 MsG0180005349.01.T01:intron 25.0%
!! TTATGCCAAATTTCTCATTT+TGG + Chr1:90634665-90634684 None:intergenic 25.0%
!! TTGGCATAATTTTATAGGTA+TGG - Chr1:90634676-90634695 MsG0180005349.01.T01:intron 25.0%
!!! AAGTTTGTTTTGTAACAGAT+AGG - Chr1:90634823-90634842 MsG0180005349.01.T01:intron 25.0%
!!! AAGTTTGTTTTGTAACAGAT+AGG + Chr1:90634842-90634823 None:intergenic 25.0%
!!! ATAGATTTTAATAGCCCTTT+TGG - Chr1:90634450-90634469 MsG0180005349.01.T01:intron 25.0%
!!! TAAAGTGCTTCATTTTCAAA+CGG + Chr1:90636474-90636493 None:intergenic 25.0%
!!! TACTATCTTTGTTTCTATCA+TGG - Chr1:90635572-90635591 MsG0180005349.01.T01:intron 25.0%
!!! TTCAAGTTTTGCTCTAAAAA+TGG - Chr1:90631806-90631825 MsG0180005349.01.T01:three_prime_UTR 25.0%
AAAAAAACTGGGTGTAGTAA+AGG - Chr1:90635309-90635328 MsG0180005349.01.T01:CDS 30.0%
AAAAGAAGGAGAAGATAAGA+AGG - Chr1:90632099-90632118 MsG0180005349.01.T01:three_prime_UTR 30.0%
AAACCAATTACATATCCCTA+AGG + Chr1:90634336-90634355 None:intergenic 30.0%
AAAGATGGAAGATGAAATCT+TGG + Chr1:90632567-90632586 None:intergenic 30.0%
AACAAGCTTGATGTAAATGT+TGG - Chr1:90632190-90632209 MsG0180005349.01.T01:exon 30.0%
AACATTGGATAGGAGTAAAA+AGG + Chr1:90632528-90632547 None:intergenic 30.0%
AACCAATTACATATCCCTAA+GGG + Chr1:90634335-90634354 None:intergenic 30.0%
AAGCATAAGGAAGAATTACA+AGG + Chr1:90631659-90631678 None:intergenic 30.0%
AAGGGCTATTAAAATCTATC+AGG + Chr1:90634449-90634468 None:intergenic 30.0%
AATAATGCTGGTATTACACT+TGG + Chr1:90635088-90635107 None:intergenic 30.0%
AATGCCAGCTTGATAAAATA+TGG + Chr1:90635758-90635777 None:intergenic 30.0%
ACGTGATTACAATTACAACT+TGG + Chr1:90637063-90637082 None:intergenic 30.0%
AGGATTACTAACAGTGATAA+CGG + Chr1:90633284-90633303 None:intergenic 30.0%
AGGTAGTAAAGATTATGTGA+AGG - Chr1:90631988-90632007 MsG0180005349.01.T01:three_prime_UTR 30.0%
ATAATGAACACCTAAAATGG+AGG + Chr1:90636849-90636868 None:intergenic 30.0%
ATACACCCAACAATTACAAA+AGG + Chr1:90635959-90635978 None:intergenic 30.0%
ATAGTTGGATGTAAATTCTG+AGG - Chr1:90636881-90636900 MsG0180005349.01.T01:CDS 30.0%
ATCAACAACATGAATGTAGT+TGG + Chr1:90636188-90636207 None:intergenic 30.0%
ATGGAGCACAAATTAAGATT+GGG - Chr1:90633990-90634009 MsG0180005349.01.T01:intron 30.0%
ATGGTCTCATGTGTATATTT+AGG + Chr1:90632664-90632683 None:intergenic 30.0%
ATTTATGGAAGCTGATATGA+TGG - Chr1:90636374-90636393 MsG0180005349.01.T01:CDS 30.0%
CAATTACAGCAGCAAATAAA+TGG + Chr1:90634261-90634280 None:intergenic 30.0%
CCTATTGTCTCTACAAAATT+AGG - Chr1:90636426-90636445 MsG0180005349.01.T01:CDS 30.0%
CCTGATTCTTCAAAAAAAAC+TGG - Chr1:90635297-90635316 MsG0180005349.01.T01:CDS 30.0%
GAAGTTTCTGAACAAAAAGA+TGG - Chr1:90632043-90632062 MsG0180005349.01.T01:three_prime_UTR 30.0%
GAATGGAAAAAAATTGTCCT+TGG + Chr1:90633640-90633659 None:intergenic 30.0%
GCAAGAAAGTAACGAAAAAT+AGG + Chr1:90633832-90633851 None:intergenic 30.0%
GGATGAAGTTGAAGAATAAA+TGG + Chr1:90631638-90631657 None:intergenic 30.0%
GTATGAATAAAAATGGAGTC+AGG + Chr1:90635035-90635054 None:intergenic 30.0%
GTTACAAACGTCAAACTTAA+AGG - Chr1:90635522-90635541 MsG0180005349.01.T01:intron 30.0%
GTTACAAACGTCAAACTTAA+AGG + Chr1:90635541-90635522 None:intergenic 30.0%
GTTGTATATAAAAAGCAAGC+AGG + Chr1:90634616-90634635 None:intergenic 30.0%
GTTTGACGTTTGTAACATAT+AGG - Chr1:90634794-90634813 MsG0180005349.01.T01:intron 30.0%
GTTTGACGTTTGTAACATAT+AGG + Chr1:90634813-90634794 None:intergenic 30.0%
TAAAACCTCAGCAAACAAAA+TGG + Chr1:90632407-90632426 None:intergenic 30.0%
TAATGAACACCTAAAATGGA+GGG + Chr1:90636848-90636867 None:intergenic 30.0%
TAGTAAAGATTATGTGAAGG+AGG - Chr1:90631991-90632010 MsG0180005349.01.T01:three_prime_UTR 30.0%
TAGTTGGATGTAAATTCTGA+GGG - Chr1:90636882-90636901 MsG0180005349.01.T01:CDS 30.0%
TATGGAGCACAAATTAAGAT+TGG - Chr1:90633989-90634008 MsG0180005349.01.T01:intron 30.0%
TCATTAGACTTTACAGAGAT+AGG + Chr1:90633304-90633323 None:intergenic 30.0%
TCCATTTCTTTACCATTCAA+AGG + Chr1:90632256-90632275 None:intergenic 30.0%
TCCGACTCATAAATTAAAGA+TGG + Chr1:90632582-90632601 None:intergenic 30.0%
TCCTTTGAATGGTAAAGAAA+TGG - Chr1:90632252-90632271 MsG0180005349.01.T01:CDS 30.0%
TCTTCCCAAAATGAGAAATT+TGG - Chr1:90634657-90634676 MsG0180005349.01.T01:intron 30.0%
TGATTTCTTGCTGAAAATGA+AGG + Chr1:90631693-90631712 None:intergenic 30.0%
TTAGAAACAATTGAACCATG+AGG + Chr1:90631758-90631777 None:intergenic 30.0%
TTAGGGATATGTAATTGGTT+TGG - Chr1:90634335-90634354 MsG0180005349.01.T01:intron 30.0%
! AATTTTGTAGAGACAATAGG+AGG + Chr1:90636426-90636445 None:intergenic 30.0%
! AGATAATGAGGTATTAGAAC+TGG - Chr1:90632021-90632040 MsG0180005349.01.T01:three_prime_UTR 30.0%
! ATACTTGATCATGATGATGT+AGG - Chr1:90633700-90633719 MsG0180005349.01.T01:intron 30.0%
! ATTGTTCTCCTATGTTGTTT+GGG - Chr1:90636691-90636710 MsG0180005349.01.T01:CDS 30.0%
! CCTAATTTTGTAGAGACAAT+AGG + Chr1:90636429-90636448 None:intergenic 30.0%
! GAAAATGTAAGTTGCAGTTT+TGG - Chr1:90633601-90633620 MsG0180005349.01.T01:intron 30.0%
! TTACCTCAGAGAGATTTTAT+CGG + Chr1:90635916-90635935 None:intergenic 30.0%
! TTTAGAGCAAAACTTGAAGT+GGG + Chr1:90631804-90631823 None:intergenic 30.0%
! TTTGTTATGTGATGTGAACA+AGG - Chr1:90632279-90632298 MsG0180005349.01.T01:CDS 30.0%
!! AATGACTTGGTGTATATGTA+TGG - Chr1:90633108-90633127 MsG0180005349.01.T01:intron 30.0%
!! ACGGAGTATTGATAAGATAA+TGG + Chr1:90633265-90633284 None:intergenic 30.0%
!! ATCTTAATTTGTGCTCCATA+TGG + Chr1:90633989-90634008 None:intergenic 30.0%
!! ATTTTGTTTGCTGAGGTTTT+AGG - Chr1:90632406-90632425 MsG0180005349.01.T01:intron 30.0%
!! GATCATACAGAGAGTATTTA+TGG - Chr1:90636359-90636378 MsG0180005349.01.T01:CDS 30.0%
!! TATGTAATTGGTTTGGTATC+AGG - Chr1:90634342-90634361 MsG0180005349.01.T01:intron 30.0%
!! TCAATTTGAGTTCTTTTCGA+TGG - Chr1:90634073-90634092 MsG0180005349.01.T01:intron 30.0%
!! TTTTAATAGCCCTTTTGGTT+TGG - Chr1:90634455-90634474 MsG0180005349.01.T01:intron 30.0%
!!! AAGTTTTGCTCTAAAAATGG+TGG - Chr1:90631809-90631828 MsG0180005349.01.T01:three_prime_UTR 30.0%
!!! AGTTTTGCTCTAAAAATGGT+GGG - Chr1:90631810-90631829 MsG0180005349.01.T01:three_prime_UTR 30.0%
!!! CCAGTTTTTTTTGAAGAATC+AGG + Chr1:90635300-90635319 None:intergenic 30.0%
!!! TGAACAGTTTTTTTTCATGC+TGG + Chr1:90636542-90636561 None:intergenic 30.0%
!!! TTTTAGAGCAAAACTTGAAG+TGG + Chr1:90631805-90631824 None:intergenic 30.0%
AAAAGGCTTAATTACACCAC+AGG + Chr1:90635549-90635568 None:intergenic 35.0%
AACTGTTGTCTTCTTTCCTT+CGG - Chr1:90635265-90635284 MsG0180005349.01.T01:intron 35.0%
AATCAAGGACTTGAATGACT+TGG - Chr1:90633095-90633114 MsG0180005349.01.T01:intron 35.0%
AATGAACACCTAAAATGGAG+GGG + Chr1:90636847-90636866 None:intergenic 35.0%
AATGTTGGAGCAGATTTACT+AGG - Chr1:90632205-90632224 MsG0180005349.01.T01:CDS 35.0%
ACAAACCAAACCGTACTATT+CGG + Chr1:90634565-90634584 None:intergenic 35.0%
ACAGCAGCAAATAAATGGAA+AGG + Chr1:90634256-90634275 None:intergenic 35.0%
ACCACACGAAATCTAATTGT+TGG + Chr1:90635243-90635262 None:intergenic 35.0%
ACTAGGTACAATGTTAACCA+AGG - Chr1:90632222-90632241 MsG0180005349.01.T01:CDS 35.0%
AGAATTACAGAGTGGAATAC+TGG - Chr1:90633408-90633427 MsG0180005349.01.T01:intron 35.0%
AGATTGGGAAAACTAACAGA+AGG - Chr1:90634005-90634024 MsG0180005349.01.T01:intron 35.0%
AGCCTTCTAGTAGAAATCAA+CGG + Chr1:90632451-90632470 None:intergenic 35.0%
AGGAATCCAACATGTTCATT+TGG + Chr1:90635781-90635800 None:intergenic 35.0%
AGGAGTGGAAAGAACAATAT+TGG + Chr1:90631738-90631757 None:intergenic 35.0%
AGTAACTACACTGTTCAGAA+TGG + Chr1:90633657-90633676 None:intergenic 35.0%
AGTTAATCCAAAGTCCAAAC+AGG - Chr1:90632958-90632977 MsG0180005349.01.T01:intron 35.0%
ATGGCTAAAATGTGACTTGA+AGG - Chr1:90633034-90633053 MsG0180005349.01.T01:intron 35.0%
CAGCTTGATAAAATATGGAC+AGG + Chr1:90635753-90635772 None:intergenic 35.0%
CATTGTTCTCCTATGTTGTT+TGG - Chr1:90636690-90636709 MsG0180005349.01.T01:CDS 35.0%
GATAATGCACTAGGAAAATC+AGG - Chr1:90634111-90634130 MsG0180005349.01.T01:intron 35.0%
GATTACCAAGTACATTGCAA+AGG + Chr1:90635199-90635218 None:intergenic 35.0%
GATTGCATTGTCTTAGTTTC+TGG - Chr1:90633003-90633022 MsG0180005349.01.T01:intron 35.0%
GATTTGACGAATTCAAGCTT+TGG + Chr1:90635057-90635076 None:intergenic 35.0%
GCACACTGTTACAAAGTTAA+AGG + Chr1:90634910-90634929 None:intergenic 35.0%
GCTTGAATTCGTCAAATCAA+TGG - Chr1:90635059-90635078 MsG0180005349.01.T01:intron 35.0%
GGAGTGGAAAGAACAATATT+GGG + Chr1:90631737-90631756 None:intergenic 35.0%
GTAATACCAGCATTATTGCA+GGG - Chr1:90635091-90635110 MsG0180005349.01.T01:intron 35.0%
GTTTGACGTTTGTAACATAC+AGG - Chr1:90634854-90634873 MsG0180005349.01.T01:intron 35.0%
TAATACCAGCATTATTGCAG+GGG - Chr1:90635092-90635111 MsG0180005349.01.T01:intron 35.0%
TACAACTTGGATACTTCACA+GGG + Chr1:90637050-90637069 None:intergenic 35.0%
TATTGCCTTTGCAATGTACT+TGG - Chr1:90635191-90635210 MsG0180005349.01.T01:intron 35.0%
TCAAGTCTTTCTGGGTTAAT+TGG - Chr1:90635978-90635997 MsG0180005349.01.T01:intron 35.0%
TCCAACAATTAGATTTCGTG+TGG - Chr1:90635239-90635258 MsG0180005349.01.T01:intron 35.0%
TCTGTAATTCTAACCTCGAT+AGG + Chr1:90633399-90633418 None:intergenic 35.0%
TGAGAATTGGGGAAATGTAA+GGG + Chr1:90635009-90635028 None:intergenic 35.0%
TGTAATACCAGCATTATTGC+AGG - Chr1:90635090-90635109 MsG0180005349.01.T01:intron 35.0%
TTACAACTTGGATACTTCAC+AGG + Chr1:90637051-90637070 None:intergenic 35.0%
TTCATGAATTCGGATGTGTA+GGG - Chr1:90633514-90633533 MsG0180005349.01.T01:intron 35.0%
TTGAGAATTGGGGAAATGTA+AGG + Chr1:90635010-90635029 None:intergenic 35.0%
TTTAGGCTTAATTACACCAC+AGG - Chr1:90634763-90634782 MsG0180005349.01.T01:CDS 35.0%
! AAAAGGCATATCTTCGTGAA+GGG - Chr1:90633930-90633949 MsG0180005349.01.T01:intron 35.0%
! AAGTTTTCCTGAAGAGCTTA+TGG - Chr1:90632861-90632880 MsG0180005349.01.T01:CDS 35.0%
! ACAACAAAATCACCAGGTTT+TGG + Chr1:90632145-90632164 None:intergenic 35.0%
! ATGAAGCACTTTATGCAAAC+TGG - Chr1:90636481-90636500 MsG0180005349.01.T01:CDS 35.0%
! CTGTCCATATTTTATCAAGC+TGG - Chr1:90635751-90635770 MsG0180005349.01.T01:intron 35.0%
! TAAGCACTTGTTAGACTGTT+TGG + Chr1:90632917-90632936 None:intergenic 35.0%
! TACCTCAGAGAGATTTTATC+GGG + Chr1:90635915-90635934 None:intergenic 35.0%
! TGCAATGTACTTGGTAATCT+TGG - Chr1:90635200-90635219 MsG0180005349.01.T01:intron 35.0%
! TTGATCATGATGATGTAGGT+GGG - Chr1:90633704-90633723 MsG0180005349.01.T01:intron 35.0%
! TTTTACGGTGAGTTAACAGA+AGG - Chr1:90635371-90635390 MsG0180005349.01.T01:intron 35.0%
!! AAACCTGGTGATTTTGTTGT+TGG - Chr1:90632145-90632164 MsG0180005349.01.T01:three_prime_UTR 35.0%
!! GTTTTAGGTAGAACACTTAG+TGG - Chr1:90632421-90632440 MsG0180005349.01.T01:intron 35.0%
!! TAAAAATGGTGGGTTTGATG+AGG - Chr1:90631820-90631839 MsG0180005349.01.T01:three_prime_UTR 35.0%
!! TACGGTTTGGTTTGTTCAAT+GGG - Chr1:90634570-90634589 MsG0180005349.01.T01:intron 35.0%
!! TCTTTGGTGCTTAGTGAAAA+GGG - Chr1:90633773-90633792 MsG0180005349.01.T01:intron 35.0%
!! TTCTTTGGTGCTTAGTGAAA+AGG - Chr1:90633772-90633791 MsG0180005349.01.T01:intron 35.0%
!!! ACAACAGCAGATGTCATTTT+TGG + Chr1:90633138-90633157 None:intergenic 35.0%
!!! TCACGTCAGCGTTTTTTTTA+CGG - Chr1:90635356-90635375 MsG0180005349.01.T01:intron 35.0%
AAAAAAGCTTCACCACTCTG+AGG + Chr1:90636662-90636681 None:intergenic 40.0%
AAAAGATGGTGTGAGTGATG+AGG - Chr1:90632057-90632076 MsG0180005349.01.T01:three_prime_UTR 40.0%
AAACCAAACCGTACTATTCG+GGG + Chr1:90634563-90634582 None:intergenic 40.0%
AAAGTCCAGGTTCACTTTCA+AGG + Chr1:90636246-90636265 None:intergenic 40.0%
AAATCTATCAGGCACCTAAC+TGG + Chr1:90634438-90634457 None:intergenic 40.0%
AACAATTGAACCATGAGGAG+TGG + Chr1:90631753-90631772 None:intergenic 40.0%
AAGTCCAGGTTCACTTTCAA+GGG + Chr1:90636245-90636264 None:intergenic 40.0%
AATCAGGAGAAGATAACCGA+AGG + Chr1:90635284-90635303 None:intergenic 40.0%
AATGCACTAGGAAAATCAGG+CGG - Chr1:90634114-90634133 MsG0180005349.01.T01:intron 40.0%
ACACCAACAACAAAATCACC+AGG + Chr1:90632151-90632170 None:intergenic 40.0%
ACATGTTGGATTCCTTTCAG+TGG - Chr1:90635786-90635805 MsG0180005349.01.T01:intron 40.0%
AGCCCTTAGGGATATGTAAT+TGG - Chr1:90634330-90634349 MsG0180005349.01.T01:intron 40.0%
AGCCTTAACCTTCTCATCAA+CGG + Chr1:90635871-90635890 None:intergenic 40.0%
ATCTGACCCTTGAAAGACAA+AGG + Chr1:90632986-90633005 None:intergenic 40.0%
ATGGCTGCATTGCTGTAAAT+AGG - Chr1:90635642-90635661 MsG0180005349.01.T01:intron 40.0%
ATGGTTCCAGTTTCTACAAC+AGG + Chr1:90632388-90632407 None:intergenic 40.0%
ATGTGATGTGAACAAGGATG+CGG - Chr1:90632285-90632304 MsG0180005349.01.T01:CDS 40.0%
ATTACAGAGTGGAATACTGG+TGG - Chr1:90633411-90633430 MsG0180005349.01.T01:intron 40.0%
ATTGTTCTTTCCACTCCTCA+TGG - Chr1:90631740-90631759 MsG0180005349.01.T01:three_prime_UTR 40.0%
CAAACCAAACCGTACTATTC+GGG + Chr1:90634564-90634583 None:intergenic 40.0%
CACTTTATGCAAACTGGAAG+TGG - Chr1:90636487-90636506 MsG0180005349.01.T01:CDS 40.0%
CATGTTGGATTCCTTTCAGT+GGG - Chr1:90635787-90635806 MsG0180005349.01.T01:intron 40.0%
CTTCATGAATTCGGATGTGT+AGG - Chr1:90633513-90633532 MsG0180005349.01.T01:intron 40.0%
GACATATCCATAAGCTCTTC+AGG + Chr1:90632871-90632890 None:intergenic 40.0%
GCACACTGTTACAGAGTTAA+AGG - Chr1:90635402-90635421 MsG0180005349.01.T01:intron 40.0%
GGCATTCCAAATGAACATGT+TGG - Chr1:90635772-90635791 MsG0180005349.01.T01:intron 40.0%
GTAAAACGACGTACAGGAAA+AGG - Chr1:90633913-90633932 MsG0180005349.01.T01:intron 40.0%
TATCCAAACAGGGCAAAAGT+TGG + Chr1:90632744-90632763 None:intergenic 40.0%
TCAACTTCCAAAACAGGTGA+CGG + Chr1:90631908-90631927 None:intergenic 40.0%
TCACCATTGAAGAGCCAATT+TGG + Chr1:90632712-90632731 None:intergenic 40.0%
TCAGAGAACCTTATGTTGCA+TGG - Chr1:90636578-90636597 MsG0180005349.01.T01:CDS 40.0%
TCCATCTCAACTTCCAAAAC+AGG + Chr1:90631914-90631933 None:intergenic 40.0%
TCGAGGTTAGAATTACAGAG+TGG - Chr1:90633400-90633419 MsG0180005349.01.T01:intron 40.0%
TCTAAGAACGGTTCTTCTAC+AGG - Chr1:90636121-90636140 MsG0180005349.01.T01:intron 40.0%
TCTGACCCTTGAAAGACAAA+GGG + Chr1:90632985-90633004 None:intergenic 40.0%
TGGGTGTATCAAGTCTTTCT+GGG - Chr1:90635970-90635989 MsG0180005349.01.T01:intron 40.0%
TGTATGTGCCCAAACAACAT+AGG + Chr1:90636702-90636721 None:intergenic 40.0%
TTAAATGGCATGTCTGCCAT+GGG + Chr1:90636613-90636632 None:intergenic 40.0%
TTGGGGAAATGTAAGGGTAA+AGG + Chr1:90635003-90635022 None:intergenic 40.0%
TTGGGTGTATCAAGTCTTTC+TGG - Chr1:90635969-90635988 MsG0180005349.01.T01:intron 40.0%
TTTACGGTTCAAGGGAAGAT+GGG - Chr1:90632313-90632332 MsG0180005349.01.T01:CDS 40.0%
TTTGTAGAGACAATAGGAGG+AGG + Chr1:90636423-90636442 None:intergenic 40.0%
! ACCTCAGAGAGATTTTATCG+GGG + Chr1:90635914-90635933 None:intergenic 40.0%
! AGTTTCTTCCCCTCCATTTT+AGG - Chr1:90636836-90636855 MsG0180005349.01.T01:CDS 40.0%
! ATGCCAAATTGGCTCTTCAA+TGG - Chr1:90632706-90632725 MsG0180005349.01.T01:intron 40.0%
! CAAGGATGCGGAGAATTTTA+CGG - Chr1:90632297-90632316 MsG0180005349.01.T01:CDS 40.0%
! CATCGATGTTTCGAGTATCT+AGG - Chr1:90633851-90633870 MsG0180005349.01.T01:intron 40.0%
! CGGAGAATTTTACGGTTCAA+GGG - Chr1:90632305-90632324 MsG0180005349.01.T01:CDS 40.0%
! CTTGATCATGATGATGTAGG+TGG - Chr1:90633703-90633722 MsG0180005349.01.T01:intron 40.0%
! GAAAAGGCATATCTTCGTGA+AGG - Chr1:90633929-90633948 MsG0180005349.01.T01:intron 40.0%
! GAGGTTTCAAGTGATTTAGC+TGG - Chr1:90631839-90631858 MsG0180005349.01.T01:three_prime_UTR 40.0%
! GAGTTCTTTTCGATGGATGA+TGG - Chr1:90634080-90634099 MsG0180005349.01.T01:intron 40.0%
! GCATGGGGCTATAAAGTATT+TGG - Chr1:90636724-90636743 MsG0180005349.01.T01:CDS 40.0%
! TATCCAACTTTTGCCCTGTT+TGG - Chr1:90632738-90632757 MsG0180005349.01.T01:intron 40.0%
! TCTTGGAGGATTTTCACGTT+AGG + Chr1:90636072-90636091 None:intergenic 40.0%
! TGATCATGATGATGTAGGTG+GGG - Chr1:90633705-90633724 MsG0180005349.01.T01:intron 40.0%
! TTTTACGGTTCAAGGGAAGA+TGG - Chr1:90632312-90632331 MsG0180005349.01.T01:CDS 40.0%
!! AAGGAAGTGCTTCCTTTGAA+TGG - Chr1:90632241-90632260 MsG0180005349.01.T01:CDS 40.0%
!! ATTCAAAGGAAGCACTTCCT+TGG + Chr1:90632242-90632261 None:intergenic 40.0%
!! GACCGTTGATTTCTACTAGA+AGG - Chr1:90632446-90632465 MsG0180005349.01.T01:CDS 40.0%
!! GACTTGGTGTATATGTATGG+AGG - Chr1:90633111-90633130 MsG0180005349.01.T01:intron 40.0%
!! GTACGGTTTGGTTTGTTCAA+TGG - Chr1:90634569-90634588 MsG0180005349.01.T01:intron 40.0%
!! GTTGTTGGTGTTGTTGTTTC+AGG - Chr1:90632160-90632179 MsG0180005349.01.T01:three_prime_UTR 40.0%
!! GTTTGGTTTGTTCAATGGGA+TGG - Chr1:90634574-90634593 MsG0180005349.01.T01:intron 40.0%
!! TCACATTTTAGCCATCAAGC+TGG + Chr1:90633029-90633048 None:intergenic 40.0%
!! TGGAACCATTTTGTTTGCTG+AGG - Chr1:90632399-90632418 MsG0180005349.01.T01:intron 40.0%
!!! ACCTGTTTTGGAAGTTGAGA+TGG - Chr1:90631910-90631929 MsG0180005349.01.T01:three_prime_UTR 40.0%
!!! CCACGTCAGCGTTTTTTTTA+CGG + Chr1:90634956-90634975 None:intergenic 40.0%
AAGCAGGGATTTAGGTCTTG+AGG + Chr1:90634484-90634503 None:intergenic 45.0%
ACAGAAGGTGAGTGATTGCT+CGG - Chr1:90634020-90634039 MsG0180005349.01.T01:intron 45.0%
ACAGCTCAATGAACCTATCG+AGG - Chr1:90633383-90633402 MsG0180005349.01.T01:intron 45.0%
AGACCTCAATCGTTGTTAGC+AGG + Chr1:90633437-90633456 None:intergenic 45.0%
CCGTAAAAAAAACGCTGACG+TGG - Chr1:90634953-90634972 MsG0180005349.01.T01:CDS 45.0%
CCTACTATCTCCTAGAGACA+GGG - Chr1:90634527-90634546 MsG0180005349.01.T01:intron 45.0%
CGTCAAACTTAAAGGACCTG+TGG - Chr1:90635530-90635549 MsG0180005349.01.T01:intron 45.0%
CGTCAAACTTAAAGGACCTG+TGG + Chr1:90635549-90635530 None:intergenic 45.0%
CTACTAGAAGGCTCTTTCGT+CGG - Chr1:90632458-90632477 MsG0180005349.01.T01:CDS 45.0%
CTGACCCTTGAAAGACAAAG+GGG + Chr1:90632984-90633003 None:intergenic 45.0%
CTTAAATGGCATGTCTGCCA+TGG + Chr1:90636614-90636633 None:intergenic 45.0%
CTTGTCACAAGCTCAGCTTT+GGG + Chr1:90633556-90633575 None:intergenic 45.0%
GAGTACTATGAGCCAAAACC+TGG - Chr1:90632130-90632149 MsG0180005349.01.T01:three_prime_UTR 45.0%
GAGTCAGGGTTTGAGAATTG+GGG + Chr1:90635020-90635039 None:intergenic 45.0%
GCTTAGTGAAAAGGGAGCTT+GGG - Chr1:90633781-90633800 MsG0180005349.01.T01:intron 45.0%
GGAGGTTGACGAAGATAATG+AGG - Chr1:90632009-90632028 MsG0180005349.01.T01:three_prime_UTR 45.0%
GGAGTCAGGGTTTGAGAATT+GGG + Chr1:90635021-90635040 None:intergenic 45.0%
GGAGTTGCAGTTGAAGCATA+AGG + Chr1:90631672-90631691 None:intergenic 45.0%
TCCCCGATAAAATCTCTCTG+AGG - Chr1:90635910-90635929 MsG0180005349.01.T01:intron 45.0%
TCCTACTATCTCCTAGAGAC+AGG - Chr1:90634526-90634545 MsG0180005349.01.T01:intron 45.0%
TCTTGTCACAAGCTCAGCTT+TGG + Chr1:90633557-90633576 None:intergenic 45.0%
TGCTGTGTAAAACGACGTAC+AGG - Chr1:90633907-90633926 MsG0180005349.01.T01:intron 45.0%
TGCTTAGTGAAAAGGGAGCT+TGG - Chr1:90633780-90633799 MsG0180005349.01.T01:intron 45.0%
TGGAGTCAGGGTTTGAGAAT+TGG + Chr1:90635022-90635041 None:intergenic 45.0%
TTCTTCCCCTGCAATAATGC+TGG + Chr1:90635100-90635119 None:intergenic 45.0%
TTGAAGCGAAGCAGGGATTT+AGG + Chr1:90634492-90634511 None:intergenic 45.0%
TTGAGGACGCCAAACCAAAA+GGG + Chr1:90634467-90634486 None:intergenic 45.0%
TTGGAACGTTCTTCTTGCCA+AGG - Chr1:90633620-90633639 MsG0180005349.01.T01:intron 45.0%
TTTGGGCACATACAGAGCAT+GGG - Chr1:90636708-90636727 MsG0180005349.01.T01:CDS 45.0%
! AACTCGTTTGAAGCGAAGCA+GGG + Chr1:90634499-90634518 None:intergenic 45.0%
! ACAAGAGAAGCCTTCTGAAG+AGG - Chr1:90631934-90631953 MsG0180005349.01.T01:three_prime_UTR 45.0%
! AGGTTAAGGCTCTTGTTGTG+AGG - Chr1:90635880-90635899 MsG0180005349.01.T01:intron 45.0%
! CGTGAAGGGACACTTTTAGA+CGG - Chr1:90633944-90633963 MsG0180005349.01.T01:intron 45.0%
! CTCCGTTGATGAGAAGGTTA+AGG - Chr1:90635866-90635885 MsG0180005349.01.T01:intron 45.0%
! CTGACAGGTTTGCTCTATTC+CGG + Chr1:90634404-90634423 None:intergenic 45.0%
! GCGGAGAATTTTACGGTTCA+AGG - Chr1:90632304-90632323 MsG0180005349.01.T01:CDS 45.0%
! TCAAACGGCAAAGCACTAGT+TGG + Chr1:90636459-90636478 None:intergenic 45.0%
!! ACGTAGTCGAGCTCTAAGAA+CGG - Chr1:90636109-90636128 MsG0180005349.01.T01:intron 45.0%
!! CTGGGTTAATTGGCCTTGTT+TGG - Chr1:90635988-90636007 MsG0180005349.01.T01:intron 45.0%
!! GGCAAAGCACTAGTTGGTAA+GGG + Chr1:90636453-90636472 None:intergenic 45.0%
!! TTAGTTTCTGGCCAGCTTGA+TGG - Chr1:90633015-90633034 MsG0180005349.01.T01:intron 45.0%
AAACCGTACTATTCGGGGTC+AGG + Chr1:90634558-90634577 None:intergenic 50.0%
AAAGGGGCCTGTTTGGACTT+TGG + Chr1:90632968-90632987 None:intergenic 50.0%
AACCCTGACCCCGAATAGTA+CGG - Chr1:90634552-90634571 MsG0180005349.01.T01:intron 50.0%
AACCGTACTATTCGGGGTCA+GGG + Chr1:90634557-90634576 None:intergenic 50.0%
ACAGGCCCCTTTGTCTTTCA+AGG - Chr1:90632976-90632995 MsG0180005349.01.T01:intron 50.0%
ACATGCAGCAACCCACTGAA+AGG + Chr1:90635801-90635820 None:intergenic 50.0%
AGCAAACCTGTCAGGCATTC+AGG - Chr1:90634410-90634429 MsG0180005349.01.T01:intron 50.0%
CAGGCATTCAGGAACCAGTT+AGG - Chr1:90634421-90634440 MsG0180005349.01.T01:intron 50.0%
CAGGCCCCTTTGTCTTTCAA+GGG - Chr1:90632977-90632996 MsG0180005349.01.T01:intron 50.0%
CGGAATAGAGCAAACCTGTC+AGG - Chr1:90634402-90634421 MsG0180005349.01.T01:intron 50.0%
CTGGTGAGCCATGCAACATA+AGG + Chr1:90636589-90636608 None:intergenic 50.0%
CTTGAGGACGCCAAACCAAA+AGG + Chr1:90634468-90634487 None:intergenic 50.0%
GAAAGACAAAGGGGCCTGTT+TGG + Chr1:90632975-90632994 None:intergenic 50.0%
GCCAAAGCTTCCTCTTCAGA+AGG + Chr1:90631947-90631966 None:intergenic 50.0%
GCTTTCTGCATGAGCCCTTA+GGG - Chr1:90634318-90634337 MsG0180005349.01.T01:intron 50.0%
GGAAGGCCTGTTGTAGAAAC+TGG - Chr1:90632379-90632398 MsG0180005349.01.T01:intron 50.0%
GTTTCTACAACAGGCCTTCC+TGG + Chr1:90632379-90632398 None:intergenic 50.0%
GTTTGGGCACATACAGAGCA+TGG - Chr1:90636707-90636726 MsG0180005349.01.T01:CDS 50.0%
TCAGGGTTTACCCTGTCTCT+AGG + Chr1:90634540-90634559 None:intergenic 50.0%
TCCAGGTTCACTTTCAAGGG+CGG + Chr1:90636242-90636261 None:intergenic 50.0%
TGACCCCGAATAGTACGGTT+TGG - Chr1:90634557-90634576 MsG0180005349.01.T01:intron 50.0%
TGCTTTCTGCATGAGCCCTT+AGG - Chr1:90634317-90634336 MsG0180005349.01.T01:intron 50.0%
TGGCCTGCTAACAACGATTG+AGG - Chr1:90633431-90633450 MsG0180005349.01.T01:intron 50.0%
TTATTGCAGGGGAAGAACGC+AGG - Chr1:90635103-90635122 MsG0180005349.01.T01:intron 50.0%
TTGGGCACATACAGAGCATG+GGG - Chr1:90636709-90636728 MsG0180005349.01.T01:CDS 50.0%
! CAACTCGTTTGAAGCGAAGC+AGG + Chr1:90634500-90634519 None:intergenic 50.0%
! CCCTGTCTCTAGGAGATAGT+AGG + Chr1:90634530-90634549 None:intergenic 50.0%
! CGGCAAAGCACTAGTTGGTA+AGG + Chr1:90636454-90636473 None:intergenic 50.0%
! CGTACTCTCCGTTGATGAGA+AGG - Chr1:90635860-90635879 MsG0180005349.01.T01:intron 50.0%
! GAACAAGCCGTCACCTGTTT+TGG - Chr1:90631898-90631917 MsG0180005349.01.T01:three_prime_UTR 50.0%
! GCCTTCTGAAGAGGAAGCTT+TGG - Chr1:90631943-90631962 MsG0180005349.01.T01:three_prime_UTR 50.0%
!! TCACAAGCTCAGCTTTGGGT+AGG + Chr1:90633552-90633571 None:intergenic 50.0%
ATGAGTGCAGCATCAGTGCC+AGG - Chr1:90632358-90632377 MsG0180005349.01.T01:intron 55.0%
CTGGTTCCTGAATGCCTGAC+AGG + Chr1:90634419-90634438 None:intergenic 55.0%
GGCTCTTTCGTCGGATTGCT+TGG - Chr1:90632467-90632486 MsG0180005349.01.T01:CDS 55.0%
! GGATTGCTTGGCATCGAGTG+AGG - Chr1:90632479-90632498 MsG0180005349.01.T01:intron 55.0%
GCCGCCCTTGAAAGTGAACC+TGG - Chr1:90636238-90636257 MsG0180005349.01.T01:CDS 60.0%
GTGCAGCATCAGTGCCAGGA+AGG - Chr1:90632362-90632381 MsG0180005349.01.T01:intron 60.0%
TCAAGGGCGGCAATGCTGCA+TGG + Chr1:90636229-90636248 None:intergenic 60.0%
TGCATGGCTCACCAGTCCCA+TGG - Chr1:90636594-90636613 MsG0180005349.01.T01:CDS 60.0%
TGGCATGTCTGCCATGGGAC+TGG + Chr1:90636608-90636627 None:intergenic 60.0%
! GCAAGCAGGGCATTCACGTC+TGG + Chr1:90634602-90634621 None:intergenic 60.0%
! TGCTTGGCATCGAGTGAGGC+AGG - Chr1:90632483-90632502 MsG0180005349.01.T01:intron 60.0%
!! GCTTCACCACTCTGAGGTCG+AGG + Chr1:90636656-90636675 None:intergenic 60.0%
!! TCACCACTCTGAGGTCGAGG+AGG + Chr1:90636653-90636672 None:intergenic 60.0%
GAGCCTCCTCGACCTCAGAG+TGG - Chr1:90636647-90636666 MsG0180005349.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 90631632 90637088 90631632 ID=MsG0180005349.01;Name=MsG0180005349.01
Chr1 mRNA 90631632 90637088 90631632 ID=MsG0180005349.01.T01;Parent=MsG0180005349.01;Name=MsG0180005349.01.T01;_AED=0.35;_eAED=0.35;_QI=0|0.85|0.87|1|1|1|8|561|507
Chr1 exon 90631632 90632351 90631632 ID=MsG0180005349.01.T01:exon:17483;Parent=MsG0180005349.01.T01
Chr1 exon 90632438 90632486 90632438 ID=MsG0180005349.01.T01:exon:17482;Parent=MsG0180005349.01.T01
Chr1 exon 90632789 90632914 90632789 ID=MsG0180005349.01.T01:exon:17481;Parent=MsG0180005349.01.T01
Chr1 exon 90634694 90634791 90634694 ID=MsG0180005349.01.T01:exon:17480;Parent=MsG0180005349.01.T01
Chr1 exon 90634918 90634998 90634918 ID=MsG0180005349.01.T01:exon:17479;Parent=MsG0180005349.01.T01
Chr1 exon 90635114 90635185 90635114 ID=MsG0180005349.01.T01:exon:17478;Parent=MsG0180005349.01.T01
Chr1 exon 90635268 90635342 90635268 ID=MsG0180005349.01.T01:exon:17477;Parent=MsG0180005349.01.T01
Chr1 exon 90636225 90637088 90636225 ID=MsG0180005349.01.T01:exon:17476;Parent=MsG0180005349.01.T01
Chr1 CDS 90636225 90637088 90636225 ID=MsG0180005349.01.T01:cds;Parent=MsG0180005349.01.T01
Chr1 CDS 90635268 90635342 90635268 ID=MsG0180005349.01.T01:cds;Parent=MsG0180005349.01.T01
Chr1 CDS 90635114 90635185 90635114 ID=MsG0180005349.01.T01:cds;Parent=MsG0180005349.01.T01
Chr1 CDS 90634918 90634998 90634918 ID=MsG0180005349.01.T01:cds;Parent=MsG0180005349.01.T01
Chr1 CDS 90634694 90634791 90634694 ID=MsG0180005349.01.T01:cds;Parent=MsG0180005349.01.T01
Chr1 CDS 90632789 90632914 90632789 ID=MsG0180005349.01.T01:cds;Parent=MsG0180005349.01.T01
Chr1 CDS 90632438 90632486 90632438 ID=MsG0180005349.01.T01:cds;Parent=MsG0180005349.01.T01
Chr1 CDS 90632193 90632351 90632193 ID=MsG0180005349.01.T01:cds;Parent=MsG0180005349.01.T01
Chr1 three_prime_UTR 90631632 90632192 90631632 ID=MsG0180005349.01.T01:three_prime_utr;Parent=MsG0180005349.01.T01
Gene Sequence

>MsG0180005349.01.T01

ATGCCATTTATTCTTCAACTTCATCCTTGTAATTCTTCCTTATGCTTCAACTGCAACTCCTTCATTTTCAGCAAGAAATCATATAAGAAAGTTTGTTCTTTTCCCAATATTGTTCTTTCCACTCCTCATGGTTCAATTGTTTCTAAGAAAGTTTCTATTTTGAGCAATACCCACTTCAAGTTTTGCTCTAAAAATGGTGGGTTTGATGAGGTTTCAAGTGATTTAGCTGGAGAAGCCATTGATGATGAAATTCAAGTTGAGTTGTTGAACAAGCCGTCACCTGTTTTGGAAGTTGAGATGGAACAAGAGAAGCCTTCTGAAGAGGAAGCTTTGGCACCTTTTTTTAAGTTTTTCAAAGGTAGTAAAGATTATGTGAAGGAGGTTGACGAAGATAATGAGGTATTAGAACTGGAAGTTTCTGAACAAAAAGATGGTGTGAGTGATGAGGTTGAAAAAGAAGATGAAGAAAAAGAAGGAGAAGATAAGAAGGTTAATGTTGAGTACTATGAGCCAAAACCTGGTGATTTTGTTGTTGGTGTTGTTGTTTCAGGTAATGAAAACAAGCTTGATGTAAATGTTGGAGCAGATTTACTAGGTACAATGTTAACCAAGGAAGTGCTTCCTTTGAATGGTAAAGAAATGGATCATTTGTTATGTGATGTGAACAAGGATGCGGAGAATTTTACGGTTCAAGGGAAGATGGGAATTGTAAAGAATGATGAAGTAATGAGTGCAGCATCAGTGCCAGGAAGGCCTGTTGTAGAAACTGGAACCATTTTGTTTGCTGAGGTTTTAGGTAGAACACTTAGTGGTAGACCGTTGATTTCTACTAGAAGGCTCTTTCGTCGGATTGCTTGGCATCGAATACAACAGCTCAATGAACCTATCGAGGTTAGAATTACAGAGTGGAATACTGGTGGCCTGCTAACAACGATTGAGGGTTTACGAGCTTTCCTACCCAAAGCTGAGCTTGTGACAAGAGTAAATAGCTTTACTGAATTGAAAGAAAATGTGGGGCGTCGTATGTATGTAGAAATTACTCGAATAGATGAAGCAAAAAATTCTTTGGTGCTTAGTGAAAAGGGAGCTTGGGAAAAGGCATATCTTCGTGAAGGGACACTTTTAGACGGAACCGTAAAAAAGATCTTTCCATATGGAGCACAAATTAAGATTGGGAAAACTAACAGAAGTGGGTTGCTGCATGTTTCAAATATCACTCGAGCTGAAGTTACTTCTGTCAGTGACGTACTCTCCGTTGATGAGAAGGTTAAGGCTCTTGTTGTGAGGTCAATGTTCCCCGATAAAATCTCTCTGAGCATTGCCGCCCTTGAAAGTGAACCTGGACTTTTTCTTTCAAATAAAGAGAGAGTATTTATGGAAGCTGATATGATGGCAAAGAAATATAAACAAAAGCTACCTCCTCCTATTGTCTCTACAAAATTAGGACCCTTACCAACTAGTGCTTTGCCGTTTGAAAATGAAGCACTTTATGCAAACTGGAAGTGGTTTAAGTTTGAAAAATGA

Protein sequence

>MsG0180005349.01.T01

MPFILQLHPCNSSLCFNCNSFIFSKKSYKKVCSFPNIVLSTPHGSIVSKKVSILSNTHFKFCSKNGGFDEVSSDLAGEAIDDEIQVELLNKPSPVLEVEMEQEKPSEEEALAPFFKFFKGSKDYVKEVDEDNEVLELEVSEQKDGVSDEVEKEDEEKEGEDKKVNVEYYEPKPGDFVVGVVVSGNENKLDVNVGADLLGTMLTKEVLPLNGKEMDHLLCDVNKDAENFTVQGKMGIVKNDEVMSAASVPGRPVVETGTILFAEVLGRTLSGRPLISTRRLFRRIAWHRIQQLNEPIEVRITEWNTGGLLTTIEGLRAFLPKAELVTRVNSFTELKENVGRRMYVEITRIDEAKNSLVLSEKGAWEKAYLREGTLLDGTVKKIFPYGAQIKIGKTNRSGLLHVSNITRAEVTSVSDVLSVDEKVKALVVRSMFPDKISLSIAALESEPGLFLSNKERVFMEADMMAKKYKQKLPPPIVSTKLGPLPTSALPFENEALYANWKWFKFEK*