AlfalfaGEDB | MsG0180005349.01

M. sativa cultivar ZhongmuNo.1 / MsG0180005349.01

KEGG: K02945
GO: GO:0003676
PFAM: PF00575

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005349.01.T01	XP_013469599.1	95.89	511	17	2	1	507	1	511	0	984

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005349.01.T01	Q9M9H4	56.883	494	168	10	26	506	37	498	0	520

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005349.01.T01	A0A072VPA0	95.890	511	17	2	1	507	1	511	0.0	984

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047883.01	MsG0180005349.01	0.817301	3.540712e-52	2.568808e-49
MsG0080047884.01	MsG0180005349.01	0.811278	7.582391e-51	4.673590e-48
MsG0080047910.01	MsG0180005349.01	0.811646	6.308037e-51	3.925953e-48
MsG0080047955.01	MsG0180005349.01	0.829109	6.184913e-55	6.269261e-52
MsG0080047956.01	MsG0180005349.01	0.813954	1.970402e-51	1.304860e-48
MsG0080048068.01	MsG0180005349.01	0.835246	1.876312e-56	2.281488e-53
MsG0080048191.01	MsG0180005349.01	0.819443	1.158105e-52	8.913458e-50
MsG0080048198.01	MsG0180005349.01	0.825723	4.011954e-54	3.686697e-51
MsG0080048273.01	MsG0180005349.01	0.806100	9.691088e-50	5.214882e-47
MsG0080048528.01	MsG0180005349.01	0.860277	2.310047e-63	6.279473e-60

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005349.01.T01	MTR_1g097610	95.890	511	17	2	1	507	1	511	0.0	984
MsG0180005349.01.T01	MTR_2g033020	29.756	205	133	5	274	472	158	357	3.87e-20	92.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005349.01.T01	AT1G71720	56.883	494	168	10	26	506	37	498	0.0	520
MsG0180005349.01.T01	AT1G71720	57.447	423	139	7	26	438	37	428	6.44e-155	448
MsG0180005349.01.T01	AT5G30510	31.707	205	128	5	274	472	165	363	2.12e-23	102

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Find 113 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGGAGAAGATAAGA+AGG	0.446272	1:-90636599	MsG0180005349.01.T01:CDS
AAAAGATGGTGTGAGTGATG+AGG	0.692251	1:-90636641	MsG0180005349.01.T01:CDS
AAAAGGCATATCTTCGTGAA+GGG	0.634782	1:-90634768	MsG0180005349.01.T01:CDS
AAAGTCCAGGTTCACTTTCA+AGG	0.415620	1:+90632455	None:intergenic
AACAAGCTTGATGTAAATGT+TGG	0.533528	1:-90636508	MsG0180005349.01.T01:CDS
AACAATTGAACCATGAGGAG+TGG	0.579544	1:+90636948	None:intergenic
AACTTGAATTTCATCATCAA+TGG	0.393250	1:+90636831	None:intergenic
AAGCATAAGGAAGAATTACA+AGG	0.632192	1:+90637042	None:intergenic
AAGGAAGTGCTTCCTTTGAA+TGG	0.425729	1:-90636457	MsG0180005349.01.T01:CDS
AAGTCCAGGTTCACTTTCAA+GGG	0.528592	1:+90632456	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAACTGGGTGTAGTAA+AGG	-	Chr1:90635309-90635328	MsG0180005349.01.T01:CDS	30.0%
AAAAGAAGGAGAAGATAAGA+AGG	-	Chr1:90632099-90632118	MsG0180005349.01.T01:three_prime_UTR	30.0%
AAACCAATTACATATCCCTA+AGG	+	Chr1:90634336-90634355	None:intergenic	30.0%
AAAGATGGAAGATGAAATCT+TGG	+	Chr1:90632567-90632586	None:intergenic	30.0%
AACAAGCTTGATGTAAATGT+TGG	-	Chr1:90632190-90632209	MsG0180005349.01.T01:exon	30.0%
AACATTGGATAGGAGTAAAA+AGG	+	Chr1:90632528-90632547	None:intergenic	30.0%
AACCAATTACATATCCCTAA+GGG	+	Chr1:90634335-90634354	None:intergenic	30.0%
AAGCATAAGGAAGAATTACA+AGG	+	Chr1:90631659-90631678	None:intergenic	30.0%
AAGGGCTATTAAAATCTATC+AGG	+	Chr1:90634449-90634468	None:intergenic	30.0%
AATAATGCTGGTATTACACT+TGG	+	Chr1:90635088-90635107	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	90631632	90637088	90631632	ID=MsG0180005349.01;Name=MsG0180005349.01
Chr1	mRNA	90631632	90637088	90631632	ID=MsG0180005349.01.T01;Parent=MsG0180005349.01;Name=MsG0180005349.01.T01;_AED=0.35;_eAED=0.35;_QI=0\|0.85\|0.87\|1\|1\|1\|8\|561\|507
Chr1	exon	90631632	90632351	90631632	ID=MsG0180005349.01.T01:exon:17483;Parent=MsG0180005349.01.T01
Chr1	exon	90632438	90632486	90632438	ID=MsG0180005349.01.T01:exon:17482;Parent=MsG0180005349.01.T01
Chr1	exon	90632789	90632914	90632789	ID=MsG0180005349.01.T01:exon:17481;Parent=MsG0180005349.01.T01
Chr1	exon	90634694	90634791	90634694	ID=MsG0180005349.01.T01:exon:17480;Parent=MsG0180005349.01.T01
Chr1	exon	90634918	90634998	90634918	ID=MsG0180005349.01.T01:exon:17479;Parent=MsG0180005349.01.T01
Chr1	exon	90635114	90635185	90635114	ID=MsG0180005349.01.T01:exon:17478;Parent=MsG0180005349.01.T01
Chr1	exon	90635268	90635342	90635268	ID=MsG0180005349.01.T01:exon:17477;Parent=MsG0180005349.01.T01
Chr1	exon	90636225	90637088	90636225	ID=MsG0180005349.01.T01:exon:17476;Parent=MsG0180005349.01.T01
Chr1	CDS	90636225	90637088	90636225	ID=MsG0180005349.01.T01:cds;Parent=MsG0180005349.01.T01
Chr1	CDS	90635268	90635342	90635268	ID=MsG0180005349.01.T01:cds;Parent=MsG0180005349.01.T01
Chr1	CDS	90635114	90635185	90635114	ID=MsG0180005349.01.T01:cds;Parent=MsG0180005349.01.T01
Chr1	CDS	90634918	90634998	90634918	ID=MsG0180005349.01.T01:cds;Parent=MsG0180005349.01.T01
Chr1	CDS	90634694	90634791	90634694	ID=MsG0180005349.01.T01:cds;Parent=MsG0180005349.01.T01
Chr1	CDS	90632789	90632914	90632789	ID=MsG0180005349.01.T01:cds;Parent=MsG0180005349.01.T01
Chr1	CDS	90632438	90632486	90632438	ID=MsG0180005349.01.T01:cds;Parent=MsG0180005349.01.T01
Chr1	CDS	90632193	90632351	90632193	ID=MsG0180005349.01.T01:cds;Parent=MsG0180005349.01.T01
Chr1	three_prime_UTR	90631632	90632192	90631632	ID=MsG0180005349.01.T01:three_prime_utr;Parent=MsG0180005349.01.T01

Gene Sequence

>MsG0180005349.01.T01

ATGCCATTTATTCTTCAACTTCATCCTTGTAATTCTTCCTTATGCTTCAACTGCAACTCCTTCATTTTCAGCAAGAAATCATATAAGAAAGTTTGTTCTTTTCCCAATATTGTTCTTTCCACTCCTCATGGTTCAATTGTTTCTAAGAAAGTTTCTATTTTGAGCAATACCCACTTCAAGTTTTGCTCTAAAAATGGTGGGTTTGATGAGGTTTCAAGTGATTTAGCTGGAGAAGCCATTGATGATGAAATTCAAGTTGAGTTGTTGAACAAGCCGTCACCTGTTTTGGAAGTTGAGATGGAACAAGAGAAGCCTTCTGAAGAGGAAGCTTTGGCACCTTTTTTTAAGTTTTTCAAAGGTAGTAAAGATTATGTGAAGGAGGTTGACGAAGATAATGAGGTATTAGAACTGGAAGTTTCTGAACAAAAAGATGGTGTGAGTGATGAGGTTGAAAAAGAAGATGAAGAAAAAGAAGGAGAAGATAAGAAGGTTAATGTTGAGTACTATGAGCCAAAACCTGGTGATTTTGTTGTTGGTGTTGTTGTTTCAGGTAATGAAAACAAGCTTGATGTAAATGTTGGAGCAGATTTACTAGGTACAATGTTAACCAAGGAAGTGCTTCCTTTGAATGGTAAAGAAATGGATCATTTGTTATGTGATGTGAACAAGGATGCGGAGAATTTTACGGTTCAAGGGAAGATGGGAATTGTAAAGAATGATGAAGTAATGAGTGCAGCATCAGTGCCAGGAAGGCCTGTTGTAGAAACTGGAACCATTTTGTTTGCTGAGGTTTTAGGTAGAACACTTAGTGGTAGACCGTTGATTTCTACTAGAAGGCTCTTTCGTCGGATTGCTTGGCATCGAATACAACAGCTCAATGAACCTATCGAGGTTAGAATTACAGAGTGGAATACTGGTGGCCTGCTAACAACGATTGAGGGTTTACGAGCTTTCCTACCCAAAGCTGAGCTTGTGACAAGAGTAAATAGCTTTACTGAATTGAAAGAAAATGTGGGGCGTCGTATGTATGTAGAAATTACTCGAATAGATGAAGCAAAAAATTCTTTGGTGCTTAGTGAAAAGGGAGCTTGGGAAAAGGCATATCTTCGTGAAGGGACACTTTTAGACGGAACCGTAAAAAAGATCTTTCCATATGGAGCACAAATTAAGATTGGGAAAACTAACAGAAGTGGGTTGCTGCATGTTTCAAATATCACTCGAGCTGAAGTTACTTCTGTCAGTGACGTACTCTCCGTTGATGAGAAGGTTAAGGCTCTTGTTGTGAGGTCAATGTTCCCCGATAAAATCTCTCTGAGCATTGCCGCCCTTGAAAGTGAACCTGGACTTTTTCTTTCAAATAAAGAGAGAGTATTTATGGAAGCTGATATGATGGCAAAGAAATATAAACAAAAGCTACCTCCTCCTATTGTCTCTACAAAATTAGGACCCTTACCAACTAGTGCTTTGCCGTTTGAAAATGAAGCACTTTATGCAAACTGGAAGTGGTTTAAGTTTGAAAAATGA

Protein sequence

>MsG0180005349.01.T01

MPFILQLHPCNSSLCFNCNSFIFSKKSYKKVCSFPNIVLSTPHGSIVSKKVSILSNTHFKFCSKNGGFDEVSSDLAGEAIDDEIQVELLNKPSPVLEVEMEQEKPSEEEALAPFFKFFKGSKDYVKEVDEDNEVLELEVSEQKDGVSDEVEKEDEEKEGEDKKVNVEYYEPKPGDFVVGVVVSGNENKLDVNVGADLLGTMLTKEVLPLNGKEMDHLLCDVNKDAENFTVQGKMGIVKNDEVMSAASVPGRPVVETGTILFAEVLGRTLSGRPLISTRRLFRRIAWHRIQQLNEPIEVRITEWNTGGLLTTIEGLRAFLPKAELVTRVNSFTELKENVGRRMYVEITRIDEAKNSLVLSEKGAWEKAYLREGTLLDGTVKKIFPYGAQIKIGKTNRSGLLHVSNITRAEVTSVSDVLSVDEKVKALVVRSMFPDKISLSIAALESEPGLFLSNKERVFMEADMMAKKYKQKLPPPIVSTKLGPLPTSALPFENEALYANWKWFKFEK*