AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016194.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016194.01.T01 MTR_3g085280 98.049 205 2 1 1 203 1 205 2.55e-149 413
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016194.01.T01 AT1G27385 75.000 148 31 1 56 203 61 202 8.16e-77 229
MsG0380016194.01.T01 AT1G27385 74.324 148 32 1 56 203 61 202 6.77e-76 228
MsG0380016194.01.T01 AT1G27385 74.324 148 31 2 56 203 61 201 3.96e-74 222
MsG0380016194.01.T01 AT1G27385 74.324 148 31 2 56 203 61 201 1.83e-73 223

Find 66 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATAATTAAGTGCAAAAT+TGG 0.169030 3:-80220707 MsG0380016194.01.T01:three_prime_UTR
TATAATCATAAAATAATTAT+TGG 0.243829 3:+80220639 None:intergenic
GTTTGAATTGGAATTGGAAT+TGG 0.292810 3:+80223903 None:intergenic
TTGGACTGGCCCAATGTTTA+CGG 0.293987 3:+80221102 None:intergenic
GCTGTGTTGAAGGCCATTTC+AGG 0.308532 3:-80223725 MsG0380016194.01.T01:intron
CGAAAACCTCCTCTCTTATT+CGG 0.315627 3:+80223860 None:intergenic
GTGAAAAGGACGAGCCTTAA+TGG 0.317788 3:+80223829 None:intergenic
GTAACGGTTTGAATTGGAAT+TGG 0.322687 3:+80223897 None:intergenic
ATGGGTTGCTTTAGACAAAA+AGG 0.324861 3:-80223518 MsG0380016194.01.T01:intron
CAAACTACGAATATGGTTAT+TGG 0.349962 3:-80223571 MsG0380016194.01.T01:CDS
TGAATACATACCCAACTGTT+AGG 0.369842 3:-80223325 MsG0380016194.01.T01:CDS
GATAGGACAAACTACGAATA+TGG 0.387015 3:-80223578 MsG0380016194.01.T01:CDS
TCCTCAAGAAGCTGTGTTGA+AGG 0.392868 3:-80223735 MsG0380016194.01.T01:CDS
ATAAAACATACCTGGGGAAT+GGG 0.419641 3:+80223224 None:intergenic
TAGTATGTTAGATTGTGTAT+AGG 0.420154 3:-80220813 MsG0380016194.01.T01:three_prime_UTR
AGGCATGTCAATATATCAAT+TGG 0.427642 3:+80220779 None:intergenic
CCAAGTTGTTTCGAGCGAAC+AGG 0.442386 3:-80221083 MsG0380016194.01.T01:intron
CCTGTTCGCTCGAAACAACT+TGG 0.450150 3:+80221083 None:intergenic
CGGATGATTCTACTAATGAA+TGG 0.463843 3:-80223537 MsG0380016194.01.T01:CDS
GAAGATGGAATTACCTGAAA+TGG 0.471281 3:+80223712 None:intergenic
ACTCCATTGCCACGGTGAAA+AGG 0.484879 3:+80223815 None:intergenic
CATAAAACATACCTGGGGAA+TGG 0.489276 3:+80223223 None:intergenic
GAATACATACCCAACTGTTA+GGG 0.490009 3:-80223324 MsG0380016194.01.T01:CDS
AGAAAATAACAATGGCGTGC+AGG 0.490251 3:-80223967 MsG0380016194.01.T01:exon
AATATGTGTCCGTAAACATT+GGG 0.511909 3:-80221111 MsG0380016194.01.T01:CDS
AAATATGTGTCCGTAAACAT+TGG 0.512566 3:-80221112 MsG0380016194.01.T01:CDS
GGATGATTCTACTAATGAAT+GGG 0.513339 3:-80223536 MsG0380016194.01.T01:CDS
ACGCTATGAGGAGGGATGAC+AGG 0.524133 3:-80220851 MsG0380016194.01.T01:CDS
GGGTTCACTGCAATAGGAAC+CGG 0.532077 3:-80223302 MsG0380016194.01.T01:CDS
GCCTTCAACACAGCTTCTTG+AGG 0.541456 3:+80223734 None:intergenic
ATACCTGGGGAATGGGCTGT+TGG 0.541945 3:+80223231 None:intergenic
ATGCCTGCTTTCTAGTGGTT+AGG 0.549502 3:-80220762 MsG0380016194.01.T01:three_prime_UTR
TCATAGCGTTATATACAGCT+TGG 0.550264 3:+80220865 None:intergenic
CAGCCTAACCACTAGAAAGC+AGG 0.556389 3:+80220759 None:intergenic
TTCACTGCAATAGGAACCGG+TGG 0.562823 3:-80223299 MsG0380016194.01.T01:CDS
TCGCTCGAAACAACTTGGAC+TGG 0.570124 3:+80221088 None:intergenic
GGATGACTTCGTGCAAGCTA+TGG 0.570776 3:-80223276 MsG0380016194.01.T01:CDS
TCTAAGACAGAAGGAAGGAT+AGG 0.570938 3:-80223595 MsG0380016194.01.T01:CDS
GCTTCGTTCAGCGATGATTG+TGG 0.572314 3:-80223939 MsG0380016194.01.T01:CDS
TTGACATGCCTGCTTTCTAG+TGG 0.576997 3:-80220767 MsG0380016194.01.T01:three_prime_UTR
AATCCAACAGCCCATTCCCC+AGG 0.580170 3:-80223234 MsG0380016194.01.T01:intron
ACTACGAATATGGTTATTGG+AGG 0.589546 3:-80223568 MsG0380016194.01.T01:CDS
CTGTATATAACGCTATGAGG+AGG 0.591746 3:-80220860 MsG0380016194.01.T01:CDS
AATTGGAATTGGAATTGCAA+TGG 0.596077 3:+80223914 None:intergenic
TTCAACACAGCTTCTTGAGG+AGG 0.596405 3:+80223737 None:intergenic
AAGCTGTATATAACGCTATG+AGG 0.598980 3:-80220863 MsG0380016194.01.T01:CDS
GCAGAGGTATCTAAGACAGA+AGG 0.603237 3:-80223604 MsG0380016194.01.T01:intron
TGTATATAACGCTATGAGGA+GGG 0.603819 3:-80220859 MsG0380016194.01.T01:CDS
AATTTGAATCCGAATAAGAG+AGG 0.614217 3:-80223869 MsG0380016194.01.T01:CDS
TTGAATCCGAATAAGAGAGG+AGG 0.625769 3:-80223866 MsG0380016194.01.T01:CDS
GAAGCACAAGGTATCAGCAA+GGG 0.626581 3:-80221137 MsG0380016194.01.T01:CDS
TGAAGCACAAGGTATCAGCA+AGG 0.632271 3:-80221138 MsG0380016194.01.T01:CDS
AAGCACAAGGTATCAGCAAG+GGG 0.636193 3:-80221136 MsG0380016194.01.T01:CDS
AACGGAGAACTCCATTGCCA+CGG 0.639383 3:+80223807 None:intergenic
AGGTATCTAAGACAGAAGGA+AGG 0.645582 3:-80223600 MsG0380016194.01.T01:CDS
GGTTATTGGAGGAACTGTCA+CGG 0.650079 3:-80223557 MsG0380016194.01.T01:CDS
AAAGAGACAGAAAATAACAA+TGG 0.654319 3:-80223975 MsG0380016194.01.T01:exon
AATACATACCCAACTGTTAG+GGG 0.655407 3:-80223323 MsG0380016194.01.T01:CDS
ACAGGGGAGTGTGAAGCACA+AGG 0.655631 3:-80221149 MsG0380016194.01.T01:intron
TTGCACGAAGTCATCCCCAC+CGG 0.656764 3:+80223283 None:intergenic
ACTTAATTATAATGATATCG+TGG 0.659871 3:+80220717 None:intergenic
CACTGCAATAGGAACCGGTG+GGG 0.661994 3:-80223297 MsG0380016194.01.T01:CDS
GTTTATCGTTACGAGAGCAA+CGG 0.672281 3:+80223789 None:intergenic
ATACATACCCAACTGTTAGG+GGG 0.700615 3:-80223322 MsG0380016194.01.T01:CDS
TCACTGCAATAGGAACCGGT+GGG 0.708899 3:-80223298 MsG0380016194.01.T01:CDS
TCATCGTGAAAAGATGACGA+CGG 0.727827 3:+80223767 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAACTAAAAAAAAAACA+TGG + Chr3:80221125-80221144 None:intergenic 10.0%
!! TAATAATTTAATACAATTCT+TGG + Chr3:80221966-80221985 None:intergenic 10.0%
!! TATCAAAATTAATAAATACT+TGG - Chr3:80221215-80221234 MsG0380016194.01.T01:intron 10.0%
!! ACCAAATATTATTCTTATAA+AGG - Chr3:80221579-80221598 MsG0380016194.01.T01:intron 15.0%
!! ACCTTTATAAGAATAATATT+TGG + Chr3:80221583-80221602 None:intergenic 15.0%
!! ATTATAATTAAGTGCAAAAT+TGG - Chr3:80223867-80223886 MsG0380016194.01.T01:CDS 15.0%
!! AATTAAATCAAATGTGAAGA+TGG + Chr3:80220880-80220899 None:intergenic 20.0%
!! ACTTAATTATAATGATATCG+TGG + Chr3:80223860-80223879 None:intergenic 20.0%
!! GGATTCAAATTAAAAAGTAA+CGG + Chr3:80220696-80220715 None:intergenic 20.0%
!! TACAACAAAATTCAATATCA+AGG + Chr3:80223679-80223698 None:intergenic 20.0%
!! TCAAAAGTTAGTATTTAGAA+GGG - Chr3:80222860-80222879 MsG0380016194.01.T01:intron 20.0%
!!! AGACTTTTTTTTTTTGAACA+AGG - Chr3:80222781-80222800 MsG0380016194.01.T01:intron 20.0%
!!! AGCCTAAAATTTTCTTATTT+GGG + Chr3:80222945-80222964 None:intergenic 20.0%
!!! CTAAATATTTTTGGCTTATA+AGG - Chr3:80221926-80221945 MsG0380016194.01.T01:intron 20.0%
!!! TAGCCTAAAATTTTCTTATT+TGG + Chr3:80222946-80222965 None:intergenic 20.0%
!!! TCAATACTTTTTCAGAAATT+TGG - Chr3:80221401-80221420 MsG0380016194.01.T01:intron 20.0%
!!! TGAATTTTGTTGTATTTTTC+AGG - Chr3:80223685-80223704 MsG0380016194.01.T01:intron 20.0%
!!! TTAATAGTGTTGTTTTTGAT+TGG - Chr3:80220938-80220957 MsG0380016194.01.T01:intron 20.0%
!!! TTTAGCTTTATGTTTGTATA+TGG - Chr3:80221141-80221160 MsG0380016194.01.T01:CDS 20.0%
!!! TTTTCTGTTTTTTATGATCA+TGG - Chr3:80223570-80223589 MsG0380016194.01.T01:CDS 20.0%
! AAAAACAGAAAACATAGAAG+AGG + Chr3:80223562-80223581 None:intergenic 25.0%
! AAAGAGACAGAAAATAACAA+TGG - Chr3:80220599-80220618 MsG0380016194.01.T01:three_prime_UTR 25.0%
! AATGTTAACATATTGCTTAC+AGG - Chr3:80223407-80223426 MsG0380016194.01.T01:intron 25.0%
! ATGTTAACATATTGCTTACA+GGG - Chr3:80223408-80223427 MsG0380016194.01.T01:intron 25.0%
! GGAAAAGAAAAAAATGAACA+AGG + Chr3:80223525-80223544 None:intergenic 25.0%
! GTCAAAAGTTAGTATTTAGA+AGG - Chr3:80222859-80222878 MsG0380016194.01.T01:intron 25.0%
! TAAAAAGTAACGGTTTGAAT+TGG + Chr3:80220686-80220705 None:intergenic 25.0%
! TAAAATTCATAACTTAGTCC+CGG - Chr3:80223104-80223123 MsG0380016194.01.T01:intron 25.0%
! TAAGTTGCACCTATTTATTT+GGG - Chr3:80221431-80221450 MsG0380016194.01.T01:intron 25.0%
! TAGACACAAAATTAACCTTA+CGG + Chr3:80221627-80221646 None:intergenic 25.0%
! TAGTATGTTAGATTGTGTAT+AGG - Chr3:80223761-80223780 MsG0380016194.01.T01:CDS 25.0%
! TGAAGTCCTTGAAAATTATA+TGG - Chr3:80222684-80222703 MsG0380016194.01.T01:intron 25.0%
! TGTGATCATTAACAATAAGT+TGG + Chr3:80223215-80223234 None:intergenic 25.0%
! TTGATACATAAAACATACCT+GGG + Chr3:80221360-80221379 None:intergenic 25.0%
! TTTACTGTATCCATATTCAA+GGG - Chr3:80222275-80222294 MsG0380016194.01.T01:intron 25.0%
! TTTCATAAGAAACTTCTAGA+AGG + Chr3:80222236-80222255 None:intergenic 25.0%
!! ATGAACAGTTTTCATTAACA+TGG - Chr3:80223341-80223360 MsG0380016194.01.T01:intron 25.0%
!! CTGTATCTGCTAAATATTTT+TGG - Chr3:80221917-80221936 MsG0380016194.01.T01:intron 25.0%
!! GTCCCAAATAAGAAAATTTT+AGG - Chr3:80222940-80222959 MsG0380016194.01.T01:intron 25.0%
!! TTCATAAGAAACTTCTAGAA+GGG + Chr3:80222235-80222254 None:intergenic 25.0%
!! TTTTACTGTATCCATATTCA+AGG - Chr3:80222274-80222293 MsG0380016194.01.T01:intron 25.0%
!!! AATATTTTTGGCTTATAAGG+TGG - Chr3:80221929-80221948 MsG0380016194.01.T01:intron 25.0%
!!! TATAATTTTCAAGGACTTCA+TGG + Chr3:80222684-80222703 None:intergenic 25.0%
!!! TATTTGTTGTTATTACCGTA+AGG - Chr3:80221609-80221628 MsG0380016194.01.T01:intron 25.0%
!!! TGTTGTTTTTGATTGGTTAA+TGG - Chr3:80220945-80220964 MsG0380016194.01.T01:intron 25.0%
!!! TTTTTTTTTTGAACAAGGAG+AGG - Chr3:80222786-80222805 MsG0380016194.01.T01:intron 25.0%
AAAAGAACACCAACACAATA+AGG - Chr3:80223156-80223175 MsG0380016194.01.T01:intron 30.0%
AAACCATTTACAGCACATAT+TGG + Chr3:80222205-80222224 None:intergenic 30.0%
AAATATGTGTCCGTAAACAT+TGG - Chr3:80223462-80223481 MsG0380016194.01.T01:intron 30.0%
AAGTTGCACCTATTTATTTG+GGG - Chr3:80221432-80221451 MsG0380016194.01.T01:intron 30.0%
AATATGTGTCCGTAAACATT+GGG - Chr3:80223463-80223482 MsG0380016194.01.T01:intron 30.0%
AATTGGAATTGGAATTGCAA+TGG + Chr3:80220663-80220682 None:intergenic 30.0%
AATTTGAATCCGAATAAGAG+AGG - Chr3:80220705-80220724 MsG0380016194.01.T01:three_prime_UTR 30.0%
ACAATAAGGATATGTAGAGT+TGG - Chr3:80223170-80223189 MsG0380016194.01.T01:intron 30.0%
AGGCATGTCAATATATCAAT+TGG + Chr3:80223798-80223817 None:intergenic 30.0%
AGGTTTACATATTATCATCG+AGG - Chr3:80222018-80222037 MsG0380016194.01.T01:intron 30.0%
ATAATATGTAAACCTGACAG+TGG + Chr3:80222013-80222032 None:intergenic 30.0%
CAAACTACGAATATGGTTAT+TGG - Chr3:80221003-80221022 MsG0380016194.01.T01:intron 30.0%
GGAAACTGAAATACCATTAA+AGG + Chr3:80222970-80222989 None:intergenic 30.0%
GGATGATTCTACTAATGAAT+GGG - Chr3:80221038-80221057 MsG0380016194.01.T01:intron 30.0%
GTAAGTTGCACCTATTTATT+TGG - Chr3:80221430-80221449 MsG0380016194.01.T01:intron 30.0%
GTTGATACATAAAACATACC+TGG + Chr3:80221361-80221380 None:intergenic 30.0%
GTTTGAATTGGAATTGGAAT+TGG + Chr3:80220674-80220693 None:intergenic 30.0%
TCTACATATCCTTATTGTGT+TGG + Chr3:80223168-80223187 None:intergenic 30.0%
TGATACATAAAACATACCTG+GGG + Chr3:80221359-80221378 None:intergenic 30.0%
TGTCCTTATAAAAAGACTAG+AGG - Chr3:80222328-80222347 MsG0380016194.01.T01:intron 30.0%
TGTTAACATATTGCTTACAG+GGG - Chr3:80223409-80223428 MsG0380016194.01.T01:intron 30.0%
! ACTAGTCTAAATGAGACAAT+GGG - Chr3:80222085-80222104 MsG0380016194.01.T01:intron 30.0%
! GAGAAGCCATATAATTTTCA+AGG + Chr3:80222693-80222712 None:intergenic 30.0%
! TAAATTTTATCATCACCCAC+CGG + Chr3:80223126-80223145 None:intergenic 30.0%
! TATTTTCTGTCTCTTTCTCT+GGG + Chr3:80220595-80220614 None:intergenic 30.0%
! TTATTTTCTGTCTCTTTCTC+TGG + Chr3:80220596-80220615 None:intergenic 30.0%
!! ATAAATACTTGGTGTTGCAT+AGG - Chr3:80221226-80221245 MsG0380016194.01.T01:intron 30.0%
!! ATTGTGTTGGTGTTCTTTTA+CGG + Chr3:80223155-80223174 None:intergenic 30.0%
!! TACTAACTTTTGACTGTTGT+TGG + Chr3:80222853-80222872 None:intergenic 30.0%
!! TCTTTTAAAGGGTCTAACTT+GGG + Chr3:80222472-80222491 None:intergenic 30.0%
!! TTTTTCAGAAATTTGGCCAT+TGG - Chr3:80221408-80221427 MsG0380016194.01.T01:intron 30.0%
!!! AATTTTAGGCTAGCCTTTAA+TGG - Chr3:80222954-80222973 MsG0380016194.01.T01:intron 30.0%
AAATAGGTGCAACTTACCAA+TGG + Chr3:80221427-80221446 None:intergenic 35.0%
AAGCTGTATATAACGCTATG+AGG - Chr3:80223711-80223730 MsG0380016194.01.T01:intron 35.0%
AATACATACCCAACTGTTAG+GGG - Chr3:80221251-80221270 MsG0380016194.01.T01:intron 35.0%
ACATCTACACTTACATTTGG+TGG - Chr3:80223365-80223384 MsG0380016194.01.T01:intron 35.0%
ACTACGAATATGGTTATTGG+AGG - Chr3:80221006-80221025 MsG0380016194.01.T01:intron 35.0%
AGTTGCACCTATTTATTTGG+GGG - Chr3:80221433-80221452 MsG0380016194.01.T01:intron 35.0%
ATAAAACATACCTGGGGAAT+GGG + Chr3:80221353-80221372 None:intergenic 35.0%
ATCTTACATGCTGTGTAACT+TGG - Chr3:80221658-80221677 MsG0380016194.01.T01:intron 35.0%
CCTTATAAAAAGACTAGAGG+AGG - Chr3:80222331-80222350 MsG0380016194.01.T01:intron 35.0%
CGGATGATTCTACTAATGAA+TGG - Chr3:80221037-80221056 MsG0380016194.01.T01:intron 35.0%
CTAGTCTAAATGAGACAATG+GGG - Chr3:80222086-80222105 MsG0380016194.01.T01:intron 35.0%
GAAGATGGAATTACCTGAAA+TGG + Chr3:80220865-80220884 None:intergenic 35.0%
GAATACATACCCAACTGTTA+GGG - Chr3:80221250-80221269 MsG0380016194.01.T01:intron 35.0%
GATAGGACAAACTACGAATA+TGG - Chr3:80220996-80221015 MsG0380016194.01.T01:intron 35.0%
GATCATAGGATTTCACACAA+TGG - Chr3:80222151-80222170 MsG0380016194.01.T01:intron 35.0%
GGTACATCTACACTTACATT+TGG - Chr3:80223362-80223381 MsG0380016194.01.T01:intron 35.0%
GTAACGGTTTGAATTGGAAT+TGG + Chr3:80220680-80220699 None:intergenic 35.0%
TATAAAAAGACTAGAGGAGG+AGG - Chr3:80222334-80222353 MsG0380016194.01.T01:intron 35.0%
TCATAGCGTTATATACAGCT+TGG + Chr3:80223712-80223731 None:intergenic 35.0%
TGAATACATACCCAACTGTT+AGG - Chr3:80221249-80221268 MsG0380016194.01.T01:intron 35.0%
TGTATATAACGCTATGAGGA+GGG - Chr3:80223715-80223734 MsG0380016194.01.T01:intron 35.0%
TTCAAGGACTTCATGGAATT+TGG + Chr3:80222677-80222696 None:intergenic 35.0%
TTGCCAATATGTGCTGTAAA+TGG - Chr3:80222199-80222218 MsG0380016194.01.T01:intron 35.0%
! AAATTTTATCATCACCCACC+GGG + Chr3:80223125-80223144 None:intergenic 35.0%
! ATCACTGTCTCGTCTTTTAA+AGG + Chr3:80222484-80222503 None:intergenic 35.0%
! ATGGGTTGCTTTAGACAAAA+AGG - Chr3:80221056-80221075 MsG0380016194.01.T01:intron 35.0%
! CACTAGTCTAAATGAGACAA+TGG - Chr3:80222084-80222103 MsG0380016194.01.T01:intron 35.0%
! CTTTTCCTATAACAACTCGA+AGG + Chr3:80223308-80223327 None:intergenic 35.0%
! TCACTGTCTCGTCTTTTAAA+GGG + Chr3:80222483-80222502 None:intergenic 35.0%
! TCATCTTTTCACGATGATCA+AGG - Chr3:80220813-80220832 MsG0380016194.01.T01:three_prime_UTR 35.0%
!! CCTCCTCTAGTCTTTTTATA+AGG + Chr3:80222334-80222353 None:intergenic 35.0%
!! CTTTTAAAGGGTCTAACTTG+GGG + Chr3:80222471-80222490 None:intergenic 35.0%
!! GAAACTTCTAGAAGGGATTT+TGG + Chr3:80222228-80222247 None:intergenic 35.0%
!! GATTTCCTTCGAGTTGTTAT+AGG - Chr3:80223300-80223319 MsG0380016194.01.T01:CDS 35.0%
!! GTCTTTTAAAGGGTCTAACT+TGG + Chr3:80222473-80222492 None:intergenic 35.0%
AAGGACTTCATGGAATTTGG+AGG + Chr3:80222674-80222693 None:intergenic 40.0%
AAGTGGAGAAGCAAAAGATG+AGG + Chr3:80222585-80222604 None:intergenic 40.0%
AATTATGTCAAGCCACTGTC+AGG - Chr3:80221998-80222017 MsG0380016194.01.T01:intron 40.0%
AATTCATAACTTAGTCCCGG+TGG - Chr3:80223107-80223126 MsG0380016194.01.T01:intron 40.0%
ACAGTGGCTTGACATAATTG+TGG + Chr3:80221997-80222016 None:intergenic 40.0%
ACGTATCGTAACAGTTGTCA+AGG - Chr3:80223070-80223089 MsG0380016194.01.T01:intron 40.0%
AGAAAATAACAATGGCGTGC+AGG - Chr3:80220607-80220626 MsG0380016194.01.T01:three_prime_UTR 40.0%
ATACATACCCAACTGTTAGG+GGG - Chr3:80221252-80221271 MsG0380016194.01.T01:intron 40.0%
ATATCAAGGTATATTCGCCC+AGG + Chr3:80223665-80223684 None:intergenic 40.0%
ATGCAATCTTAGAACCACCA+CGG + Chr3:80221889-80221908 None:intergenic 40.0%
ATTCATAACTTAGTCCCGGT+GGG - Chr3:80223108-80223127 MsG0380016194.01.T01:intron 40.0%
ATTGAGGTGATGCTTATTGC+TGG - Chr3:80221693-80221712 MsG0380016194.01.T01:intron 40.0%
CATAAAACATACCTGGGGAA+TGG + Chr3:80221354-80221373 None:intergenic 40.0%
CGAAAACCTCCTCTCTTATT+CGG + Chr3:80220717-80220736 None:intergenic 40.0%
CGGTGCAAAATTCCAAACAT+GGG + Chr3:80223004-80223023 None:intergenic 40.0%
CTGTATATAACGCTATGAGG+AGG - Chr3:80223714-80223733 MsG0380016194.01.T01:intron 40.0%
GGCTTGACATAATTGTGGTT+TGG + Chr3:80221992-80222011 None:intergenic 40.0%
GTTTATCGTTACGAGAGCAA+CGG + Chr3:80220788-80220807 None:intergenic 40.0%
TATCGTAACAGTTGTCAAGG+CGG - Chr3:80223073-80223092 MsG0380016194.01.T01:intron 40.0%
TCATCGTGAAAAGATGACGA+CGG + Chr3:80220810-80220829 None:intergenic 40.0%
TCGGTGCAAAATTCCAAACA+TGG + Chr3:80223005-80223024 None:intergenic 40.0%
TTATGAAGGACGCTGATCAT+AGG - Chr3:80222137-80222156 MsG0380016194.01.T01:intron 40.0%
TTGAATCCGAATAAGAGAGG+AGG - Chr3:80220708-80220727 MsG0380016194.01.T01:three_prime_UTR 40.0%
TTGGCTGTGTTTAGACATTG+AGG - Chr3:80221677-80221696 MsG0380016194.01.T01:intron 40.0%
TTTGCTGCATCCCTTGAATA+TGG + Chr3:80222288-80222307 None:intergenic 40.0%
! AGGTAGGAGTACATTATGGA+AGG + Chr3:80222383-80222402 None:intergenic 40.0%
! AGGTATCTAAGACAGAAGGA+AGG - Chr3:80220974-80220993 MsG0380016194.01.T01:intron 40.0%
! GACTTTTAAGCAGCTACTCA+TGG - Chr3:80222176-80222195 MsG0380016194.01.T01:intron 40.0%
! GGTAAAAAGCACATTCCTGT+TGG + Chr3:80223032-80223051 None:intergenic 40.0%
! GTGTAGGTAGGAGTACATTA+TGG + Chr3:80222387-80222406 None:intergenic 40.0%
! TCTAAGACAGAAGGAAGGAT+AGG - Chr3:80220979-80220998 MsG0380016194.01.T01:intron 40.0%
! TGACTTTAGAAGTCCAGTGT+AGG - Chr3:80221835-80221854 MsG0380016194.01.T01:intron 40.0%
! TGATTGGTTAATGGTTGCAG+AGG - Chr3:80220954-80220973 MsG0380016194.01.T01:intron 40.0%
! TTTTCGCTGCAGAACCATTA+AGG - Chr3:80220731-80220750 MsG0380016194.01.T01:three_prime_UTR 40.0%
!! GTTTGGAATTTTGCACCGAA+TGG - Chr3:80223006-80223025 MsG0380016194.01.T01:intron 40.0%
AAAGACTAGAGGAGGAGGTT+TGG - Chr3:80222339-80222358 MsG0380016194.01.T01:intron 45.0%
AAAGGGTCTAACTTGGGGAT+GGG + Chr3:80222466-80222485 None:intergenic 45.0%
ATGCTCGTACACACATTGAG+AGG - Chr3:80222753-80222772 MsG0380016194.01.T01:intron 45.0%
CAAACATGGGACTCAGTGAA+AGG + Chr3:80222991-80223010 None:intergenic 45.0%
CTCAGGACCTTGCATTATGA+AGG - Chr3:80222123-80222142 MsG0380016194.01.T01:intron 45.0%
CTTTCACTGAGTCCCATGTT+TGG - Chr3:80222989-80223008 MsG0380016194.01.T01:intron 45.0%
GAAGAGGATCACTTAGAGAG+AGG + Chr3:80223546-80223565 None:intergenic 45.0%
GATCAAATTGCAGCCTACAC+TGG + Chr3:80221851-80221870 None:intergenic 45.0%
GGAGAAGGCTAAAGACTGTT+GGG + Chr3:80222445-80222464 None:intergenic 45.0%
GGTTATTGGAGGAACTGTCA+CGG - Chr3:80221017-80221036 MsG0380016194.01.T01:intron 45.0%
GTCTCCATGCAAATGATCCT+GGG - Chr3:80223645-80223664 MsG0380016194.01.T01:intron 45.0%
GTGAAAAGGACGAGCCTTAA+TGG + Chr3:80220748-80220767 None:intergenic 45.0%
TAAAGGGTCTAACTTGGGGA+TGG + Chr3:80222467-80222486 None:intergenic 45.0%
TCAGCGTCCTTCATAATGCA+AGG + Chr3:80222133-80222152 None:intergenic 45.0%
TCCTCAAGAAGCTGTGTTGA+AGG - Chr3:80220839-80220858 MsG0380016194.01.T01:CDS 45.0%
TCGAAGGAAATCACAGTGCA+TGG + Chr3:80223292-80223311 None:intergenic 45.0%
TGCACCTATTTATTTGGGGG+CGG - Chr3:80221436-80221455 MsG0380016194.01.T01:intron 45.0%
TGTCTCCATGCAAATGATCC+TGG - Chr3:80223644-80223663 MsG0380016194.01.T01:intron 45.0%
TTATGGAAGGATCAGTCACC+CGG + Chr3:80222370-80222389 None:intergenic 45.0%
TTCAACACAGCTTCTTGAGG+AGG + Chr3:80220840-80220859 None:intergenic 45.0%
TTCTCCACTTGCTCTGTAGA+TGG - Chr3:80222595-80222614 MsG0380016194.01.T01:intron 45.0%
TTGACATGCCTGCTTTCTAG+TGG - Chr3:80223807-80223826 MsG0380016194.01.T01:CDS 45.0%
! AAGCACAAGGTATCAGCAAG+GGG - Chr3:80223438-80223457 MsG0380016194.01.T01:intron 45.0%
! ATGCCTGCTTTCTAGTGGTT+AGG - Chr3:80223812-80223831 MsG0380016194.01.T01:CDS 45.0%
! GAAGCACAAGGTATCAGCAA+GGG - Chr3:80223437-80223456 MsG0380016194.01.T01:intron 45.0%
! TGAAGCACAAGGTATCAGCA+AGG - Chr3:80223436-80223455 MsG0380016194.01.T01:intron 45.0%
!! GCAGAGGTATCTAAGACAGA+AGG - Chr3:80220970-80220989 MsG0380016194.01.T01:intron 45.0%
!! TTGGACTGGCCCAATGTTTA+CGG + Chr3:80223475-80223494 None:intergenic 45.0%
!! TATAATCATAAAATAATTAT+TGG + Chr3:80223938-80223957 None:intergenic 5.0%
AAAGACTGTTGGGAGAGTCC+AGG + Chr3:80222435-80222454 None:intergenic 50.0%
AACGGAGAACTCCATTGCCA+CGG + Chr3:80220770-80220789 None:intergenic 50.0%
AAGACTGTTGGGAGAGTCCA+GGG + Chr3:80222434-80222453 None:intergenic 50.0%
AAGGGATGCAGCAAAGTCTG+TGG - Chr3:80222293-80222312 MsG0380016194.01.T01:intron 50.0%
ACTCCATTGCCACGGTGAAA+AGG + Chr3:80220762-80220781 None:intergenic 50.0%
AGTGCATCCAACCTGATGTC+AGG - Chr3:80222640-80222659 MsG0380016194.01.T01:intron 50.0%
CACCTATTTATTTGGGGGCG+GGG - Chr3:80221438-80221457 MsG0380016194.01.T01:intron 50.0%
CAGCCTAACCACTAGAAAGC+AGG + Chr3:80223818-80223837 None:intergenic 50.0%
CAGTGAACCCCCTAACAGTT+GGG + Chr3:80221262-80221281 None:intergenic 50.0%
CCTGTTCGCTCGAAACAACT+TGG + Chr3:80223494-80223513 None:intergenic 50.0%
CGTACTCTTCTGCACAAAGC+AGG + Chr3:80223053-80223072 None:intergenic 50.0%
GAGGTTAGAATCAGCTCCAC+CGG + Chr3:80222566-80222585 None:intergenic 50.0%
GCACATTCCTGTTGGCCATT+CGG + Chr3:80223024-80223043 None:intergenic 50.0%
GCACCTATTTATTTGGGGGC+GGG - Chr3:80221437-80221456 MsG0380016194.01.T01:intron 50.0%
GCCTTCAACACAGCTTCTTG+AGG + Chr3:80220843-80220862 None:intergenic 50.0%
GCTGTGTTGAAGGCCATTTC+AGG - Chr3:80220849-80220868 MsG0380016194.01.T01:CDS 50.0%
GCTTCGTTCAGCGATGATTG+TGG - Chr3:80220635-80220654 MsG0380016194.01.T01:three_prime_UTR 50.0%
GGATGACTTCGTGCAAGCTA+TGG - Chr3:80221298-80221317 MsG0380016194.01.T01:intron 50.0%
GGGAGAAGGCTAAAGACTGT+TGG + Chr3:80222446-80222465 None:intergenic 50.0%
GGGTTCACTGCAATAGGAAC+CGG - Chr3:80221272-80221291 MsG0380016194.01.T01:intron 50.0%
GGTTCCATCTACAGAGCAAG+TGG + Chr3:80222602-80222621 None:intergenic 50.0%
GTTAGGGGGTTCACTGCAAT+AGG - Chr3:80221266-80221285 MsG0380016194.01.T01:intron 50.0%
TATGGAAGGATCAGTCACCC+GGG + Chr3:80222369-80222388 None:intergenic 50.0%
TCACTGCAATAGGAACCGGT+GGG - Chr3:80221276-80221295 MsG0380016194.01.T01:intron 50.0%
TCGCTCGAAACAACTTGGAC+TGG + Chr3:80223489-80223508 None:intergenic 50.0%
TCTAACTTGGGGATGGGAGA+AGG + Chr3:80222460-80222479 None:intergenic 50.0%
TGTGTACGAGCATGCGTAAG+CGG + Chr3:80222746-80222765 None:intergenic 50.0%
TTCACTGCAATAGGAACCGG+TGG - Chr3:80221275-80221294 MsG0380016194.01.T01:intron 50.0%
TTCGCCCAGGATCATTTGCA+TGG + Chr3:80223652-80223671 None:intergenic 50.0%
! CATGGAATTTGGAGGCACAC+TGG + Chr3:80222666-80222685 None:intergenic 50.0%
! CCAAGTTGTTTCGAGCGAAC+AGG - Chr3:80223491-80223510 MsG0380016194.01.T01:intron 50.0%
! GGGACTAGTAATCACGACTC+AGG - Chr3:80222106-80222125 MsG0380016194.01.T01:intron 50.0%
! TTTTGCACCGAATGGCCAAC+AGG - Chr3:80223014-80223033 MsG0380016194.01.T01:intron 50.0%
!! TGACATCAGGTTGGATGCAC+TGG + Chr3:80222641-80222660 None:intergenic 50.0%
AATCCAACAGCCCATTCCCC+AGG - Chr3:80221340-80221359 MsG0380016194.01.T01:intron 55.0%
ACAGAACACTCCCGAGTCGT+CGG - Chr3:80222520-80222539 MsG0380016194.01.T01:intron 55.0%
ACGCTATGAGGAGGGATGAC+AGG - Chr3:80223723-80223742 MsG0380016194.01.T01:intron 55.0%
AGAGTCCATGTCCCTCTAGC+CGG - Chr3:80222544-80222563 MsG0380016194.01.T01:intron 55.0%
ATGGACTCTTCCGACGACTC+GGG + Chr3:80222533-80222552 None:intergenic 55.0%
CACTGCAATAGGAACCGGTG+GGG - Chr3:80221277-80221296 MsG0380016194.01.T01:intron 55.0%
CATGGACTCTTCCGACGACT+CGG + Chr3:80222534-80222553 None:intergenic 55.0%
CTTTGGTTGCTGGTGCGTGT+AGG + Chr3:80222403-80222422 None:intergenic 55.0%
GCAGTGAACCCCCTAACAGT+TGG + Chr3:80221263-80221282 None:intergenic 55.0%
GTCCCCGCCCCCAAATAAAT+AGG + Chr3:80221443-80221462 None:intergenic 55.0%
GTGTACGAGCATGCGTAAGC+GGG + Chr3:80222745-80222764 None:intergenic 55.0%
TCTGCGTAGTTTAGCTGCCG+TGG - Chr3:80221869-80221888 MsG0380016194.01.T01:intron 55.0%
TGGAACCTTCGTAGAGAGCC+TGG - Chr3:80222615-80222634 MsG0380016194.01.T01:intron 55.0%
TTGCACGAAGTCATCCCCAC+CGG + Chr3:80221294-80221313 None:intergenic 55.0%
! AAGGCTCGTCCTTTTCACCG+TGG - Chr3:80220750-80220769 MsG0380016194.01.T01:three_prime_UTR 55.0%
! AATCAGCTCCACCGGCTAGA+GGG + Chr3:80222558-80222577 None:intergenic 55.0%
! ACACTGGCCTGACATCAGGT+TGG + Chr3:80222650-80222669 None:intergenic 55.0%
! ACAGGGGAGTGTGAAGCACA+AGG - Chr3:80223425-80223444 MsG0380016194.01.T01:intron 55.0%
! CGTCCTTTTCACCGTGGCAA+TGG - Chr3:80220756-80220775 MsG0380016194.01.T01:three_prime_UTR 55.0%
!! AGGAGGAGGTTTGGTTTGCC+CGG - Chr3:80222348-80222367 MsG0380016194.01.T01:intron 55.0%
!! ATACCTGGGGAATGGGCTGT+TGG + Chr3:80221346-80221365 None:intergenic 55.0%
ACTGGCCAGGCTCTCTACGA+AGG + Chr3:80222623-80222642 None:intergenic 60.0%
ACTGTTGGGAGAGTCCAGGG+CGG + Chr3:80222431-80222450 None:intergenic 60.0%
AGTCCAGGGCGGTCTGACTT+TGG + Chr3:80222420-80222439 None:intergenic 60.0%
ATGCGTAAGCGGGCATGCAC+AGG + Chr3:80222735-80222754 None:intergenic 60.0%
CAACCAAAGTCAGACCGCCC+TGG - Chr3:80222414-80222433 MsG0380016194.01.T01:intron 60.0%
GCGTAGTTTAGCTGCCGTGG+TGG - Chr3:80221872-80221891 MsG0380016194.01.T01:intron 60.0%
GGCGGTCTGACTTTGGTTGC+TGG + Chr3:80222413-80222432 None:intergenic 60.0%
GGTTGCTGGTGCGTGTAGGT+AGG + Chr3:80222399-80222418 None:intergenic 60.0%
TTTATTTGGGGGCGGGGACG+CGG - Chr3:80221444-80221463 MsG0380016194.01.T01:intron 60.0%
! AGGCACACTGGCCTGACATC+AGG + Chr3:80222654-80222673 None:intergenic 60.0%
! GAATCAGCTCCACCGGCTAG+AGG + Chr3:80222559-80222578 None:intergenic 60.0%
!! GGAGGAGGTTTGGTTTGCCC+GGG - Chr3:80222349-80222368 MsG0380016194.01.T01:intron 60.0%
!! TCAGGTTGGATGCACTGGCC+AGG + Chr3:80222636-80222655 None:intergenic 60.0%
GTCCATGTCCCTCTAGCCGG+TGG - Chr3:80222547-80222566 MsG0380016194.01.T01:intron 65.0%
TTATTTGGGGGCGGGGACGC+GGG - Chr3:80221445-80221464 MsG0380016194.01.T01:intron 65.0%
! CTCCACCGGCTAGAGGGACA+TGG + Chr3:80222552-80222571 None:intergenic 65.0%
TATTTGGGGGCGGGGACGCG+GGG - Chr3:80221446-80221465 MsG0380016194.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 80220595 80224001 80220595 ID=MsG0380016194.01;Name=MsG0380016194.01
Chr3 mRNA 80220595 80224001 80220595 ID=MsG0380016194.01.T01;Parent=MsG0380016194.01;Name=MsG0380016194.01.T01;_AED=0.39;_eAED=0.39;_QI=23|1|1|1|1|1|5|238|203
Chr3 exon 80220595 80220889 80220595 ID=MsG0380016194.01.T01:exon:32779;Parent=MsG0380016194.01.T01
Chr3 exon 80221084 80221167 80221084 ID=MsG0380016194.01.T01:exon:32778;Parent=MsG0380016194.01.T01
Chr3 exon 80223235 80223348 80223235 ID=MsG0380016194.01.T01:exon:32777;Parent=MsG0380016194.01.T01
Chr3 exon 80223519 80223622 80223519 ID=MsG0380016194.01.T01:exon:32776;Parent=MsG0380016194.01.T01
Chr3 exon 80223726 80224001 80223726 ID=MsG0380016194.01.T01:exon:32775;Parent=MsG0380016194.01.T01
Chr3 five_prime_UTR 80223979 80224001 80223979 ID=MsG0380016194.01.T01:five_prime_utr;Parent=MsG0380016194.01.T01
Chr3 CDS 80223726 80223978 80223726 ID=MsG0380016194.01.T01:cds;Parent=MsG0380016194.01.T01
Chr3 CDS 80223519 80223622 80223519 ID=MsG0380016194.01.T01:cds;Parent=MsG0380016194.01.T01
Chr3 CDS 80223235 80223348 80223235 ID=MsG0380016194.01.T01:cds;Parent=MsG0380016194.01.T01
Chr3 CDS 80221084 80221167 80221084 ID=MsG0380016194.01.T01:cds;Parent=MsG0380016194.01.T01
Chr3 CDS 80220833 80220889 80220833 ID=MsG0380016194.01.T01:cds;Parent=MsG0380016194.01.T01
Chr3 three_prime_UTR 80220595 80220832 80220595 ID=MsG0380016194.01.T01:three_prime_utr;Parent=MsG0380016194.01.T01
Gene Sequence

>MsG0380016194.01.T01

ATGGCGTGCAGGAGCATGCTTCGTTCAGCGATGATTGTGGAACCATTGCAATTCCAATTCCAATTCCAATTCAAACCGTTACTTTTTAATTTGAATCCGAATAAGAGAGGAGGTTTTCGCTGCAGAACCATTAAGGCTCGTCCTTTTCACCGTGGCAATGGAGTTCTCCGTTGCTCTCGTAACGATAAACCGTCGTCATCTTTTCACGATGATCAAGGTCCTCCTCAAGAAGCTGTGTTGAAGGCCATTTCAGAGGTATCTAAGACAGAAGGAAGGATAGGACAAACTACGAATATGGTTATTGGAGGAACTGTCACGGATGATTCTACTAATGAATGGGTTGCTTTAGACAAAAAGGTGAATACATACCCAACTGTTAGGGGGTTCACTGCAATAGGAACCGGTGGGGATGACTTCGTGCAAGCTATGGTTGTTGCTGTTGAATCTGTAATCCAACAGCCCATTCCCCAGGGGAGTGTGAAGCACAAGGTATCAGCAAGGGGCAAATATGTGTCCGTAAACATTGGGCCAGTCCAAGTTGTTTCGAGCGAACAGGTCCAAGCTGTATATAACGCTATGAGGAGGGATGACAGGATGAAATACTTTTTATAG

Protein sequence

>MsG0380016194.01.T01

MACRSMLRSAMIVEPLQFQFQFQFKPLLFNLNPNKRGGFRCRTIKARPFHRGNGVLRCSRNDKPSSSFHDDQGPPQEAVLKAISEVSKTEGRIGQTTNMVIGGTVTDDSTNEWVALDKKVNTYPTVRGFTAIGTGGDDFVQAMVVAVESVIQQPIPQGSVKHKVSARGKYVSVNIGPVQVVSSEQVQAVYNAMRRDDRMKYFL*