AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022646.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022646.01.T01 MTR_4g094100 89.443 341 31 2 30 365 24 364 0.0 611
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022646.01.T01 AT1G60600 66.667 285 94 1 84 368 79 362 1.63e-137 397
MsG0480022646.01.T01 AT1G60600 66.791 268 88 1 101 368 1 267 5.68e-129 372

Find 1 sgRNAs with CRISPR-Local

Find 275 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACTAATCATAAACTAAAA+CGG 0.505265 4:+75010380 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTATAAAAATATTTAT+AGG - Chr4:75006720-75006739 MsG0480022646.01.T01:exon 0.0%
!! GTTATAATATTTATTATTCA+TGG - Chr4:75009366-75009385 MsG0480022646.01.T01:intron 10.0%
!!! AAAAATGTAATTTTTAATAC+GGG - Chr4:75006770-75006789 MsG0480022646.01.T01:exon 10.0%
!! ATATAGAAAAAACTATAAGA+AGG + Chr4:75007586-75007605 None:intergenic 15.0%
!!! GTTCTTTTTATATTAAAACT+AGG - Chr4:75010066-75010085 MsG0480022646.01.T01:intron 15.0%
!!! TAAATGCTATTTTGTTTTAT+TGG - Chr4:75008670-75008689 MsG0480022646.01.T01:intron 15.0%
!!! TACACGTTTTAATTTTAATT+AGG + Chr4:75007169-75007188 None:intergenic 15.0%
!!! TTATTTCTTATTTTTCTTTC+AGG - Chr4:75009703-75009722 MsG0480022646.01.T01:intron 15.0%
!! AAAGGAAATTATATGAAGTA+AGG - Chr4:75010242-75010261 MsG0480022646.01.T01:intron 20.0%
!! AACTATAGAAGAAGATTAAA+TGG - Chr4:75007486-75007505 MsG0480022646.01.T01:intron 20.0%
!! AATATTATAACTCTGTAGTT+AGG + Chr4:75009357-75009376 None:intergenic 20.0%
!! ACACTAATCATAAACTAAAA+CGG + Chr4:75006644-75006663 None:intergenic 20.0%
!! ATACATATAATATGTCATGT+TGG - Chr4:75007626-75007645 MsG0480022646.01.T01:intron 20.0%
!! TTTAACATTAAGATAGGAAA+AGG + Chr4:75008443-75008462 None:intergenic 20.0%
!!! TAATCTTTTGGTTATGAATA+TGG - Chr4:75009917-75009936 MsG0480022646.01.T01:intron 20.0%
!!! TTTTTTCATTTTGGAATCAA+TGG - Chr4:75008761-75008780 MsG0480022646.01.T01:intron 20.0%
! AACGAGTTTAACATTAAGAT+AGG + Chr4:75008449-75008468 None:intergenic 25.0%
! AAGATTAAATCATAAGTCCA+TGG + Chr4:75009904-75009923 None:intergenic 25.0%
! AATTCAAGAGGATATTTCAA+TGG - Chr4:75007816-75007835 MsG0480022646.01.T01:intron 25.0%
! ATACCCTAATTGAATGAAAT+TGG - Chr4:75008234-75008253 MsG0480022646.01.T01:intron 25.0%
! CCTATCATGCAATAAAAAAT+TGG + Chr4:75008502-75008521 None:intergenic 25.0%
! TAATTGGAGTTCAGAAATAA+CGG + Chr4:75009526-75009545 None:intergenic 25.0%
! TACCCTAATTGAATGAAATT+GGG - Chr4:75008235-75008254 MsG0480022646.01.T01:intron 25.0%
! TACTAAATAAAAAGCAGTAG+TGG + Chr4:75009307-75009326 None:intergenic 25.0%
! TAGACTCTCTCATAAATATA+GGG + Chr4:75008584-75008603 None:intergenic 25.0%
! TTAGACTCTCTCATAAATAT+AGG + Chr4:75008585-75008604 None:intergenic 25.0%
! TTTATTCAAACATGTACAGA+AGG + Chr4:75008938-75008957 None:intergenic 25.0%
! TTTATTGACATGTAGATGTA+GGG - Chr4:75008273-75008292 MsG0480022646.01.T01:intron 25.0%
!! AATGTGTTGGTATAACAAAT+AGG - Chr4:75008604-75008623 MsG0480022646.01.T01:intron 25.0%
!! ACCACTACATTTTAAACTTT+TGG + Chr4:75007677-75007696 None:intergenic 25.0%
!! GGACTTATGATTTAATCTTT+TGG - Chr4:75009905-75009924 MsG0480022646.01.T01:intron 25.0%
!! TCCAAAAGTTTAAAATGTAG+TGG - Chr4:75007673-75007692 MsG0480022646.01.T01:intron 25.0%
!! TTTCAATGGAAACATTGATT+TGG - Chr4:75007830-75007849 MsG0480022646.01.T01:intron 25.0%
!! TTTTATTGACATGTAGATGT+AGG - Chr4:75008272-75008291 MsG0480022646.01.T01:intron 25.0%
!!! ACTGCTTTTTATTTAGTACA+AGG - Chr4:75009309-75009328 MsG0480022646.01.T01:CDS 25.0%
!!! ATACTGATAGTTTTAAACTG+CGG + Chr4:75008159-75008178 None:intergenic 25.0%
!!! CCAATTTTTTATTGCATGAT+AGG - Chr4:75008499-75008518 MsG0480022646.01.T01:intron 25.0%
!!! TGCTAGCTATTTTTTCATTT+TGG - Chr4:75008752-75008771 MsG0480022646.01.T01:intron 25.0%
AAAGGAATCAGTTGTAAACT+TGG - Chr4:75008859-75008878 MsG0480022646.01.T01:intron 30.0%
AAAGGTGGGATAAATAATTG+AGG + Chr4:75008425-75008444 None:intergenic 30.0%
AACAAGATTATGATATCAGC+AGG + Chr4:75009155-75009174 None:intergenic 30.0%
AACATTAAGATAGGAAAAGG+TGG + Chr4:75008440-75008459 None:intergenic 30.0%
ACATTAAGATAGGAAAAGGT+GGG + Chr4:75008439-75008458 None:intergenic 30.0%
ACCCTAATTGAATGAAATTG+GGG - Chr4:75008236-75008255 MsG0480022646.01.T01:intron 30.0%
AGAAAAGTTATGTAGAAGGA+AGG - Chr4:75008358-75008377 MsG0480022646.01.T01:CDS 30.0%
AGCATGAAACCTTTATATTG+TGG - Chr4:75008106-75008125 MsG0480022646.01.T01:intron 30.0%
ATTGTTACTGTAGTAACCTT+AGG - Chr4:75007234-75007253 MsG0480022646.01.T01:CDS 30.0%
CAAAAACAAAACTGTAAGAC+TGG + Chr4:75008550-75008569 None:intergenic 30.0%
CATACATTTGACAAGATGAA+AGG + Chr4:75007104-75007123 None:intergenic 30.0%
GATGAAAATGACTGCAAAAA+AGG + Chr4:75009498-75009517 None:intergenic 30.0%
GTATGAAATAAGGATCAAGA+TGG - Chr4:75007974-75007993 MsG0480022646.01.T01:CDS 30.0%
GTGATTGTTAAATTCAGCAT+AGG - Chr4:75007935-75007954 MsG0480022646.01.T01:CDS 30.0%
GTGTCATGGACAAAATAAAA+AGG + Chr4:75009572-75009591 None:intergenic 30.0%
TAATCACTTGTATCTACGAT+TGG - Chr4:75007413-75007432 MsG0480022646.01.T01:CDS 30.0%
TATGGTAGAGTTGTCAAAAT+GGG + Chr4:75006912-75006931 None:intergenic 30.0%
TATTTGCGGCTATATATATC+AGG - Chr4:75009121-75009140 MsG0480022646.01.T01:intron 30.0%
TCACATTTCTAAGTTTGAGT+TGG + Chr4:75008197-75008216 None:intergenic 30.0%
TCATCTTGTCAAATGTATGT+TGG - Chr4:75007105-75007124 MsG0480022646.01.T01:intron 30.0%
TGTTGGTATAACAAATAGGT+AGG - Chr4:75008608-75008627 MsG0480022646.01.T01:intron 30.0%
TTATTGACATGTAGATGTAG+GGG - Chr4:75008274-75008293 MsG0480022646.01.T01:intron 30.0%
TTTGAACTTGAAATCTCCTA+TGG + Chr4:75007717-75007736 None:intergenic 30.0%
! AAGGAAGGAACTGTATTTTA+AGG - Chr4:75008373-75008392 MsG0480022646.01.T01:CDS 30.0%
! AAGTAAGGATTTTGTTCAAG+AGG - Chr4:75010257-75010276 MsG0480022646.01.T01:intron 30.0%
! ATGTAATTTTTAATACGGGC+CGG - Chr4:75006774-75006793 MsG0480022646.01.T01:exon 30.0%
! GGACAAAGATAAGATTTTCA+TGG - Chr4:75010102-75010121 MsG0480022646.01.T01:intron 30.0%
! TCCTTCTACATAACTTTTCT+TGG + Chr4:75008358-75008377 None:intergenic 30.0%
! TGGTGTTTTGCATGAAAATA+GGG + Chr4:75006951-75006970 None:intergenic 30.0%
! TTTAAAATGTAGTGGTAGTG+TGG - Chr4:75007681-75007700 MsG0480022646.01.T01:intron 30.0%
! TTTTCATTACCTTCGGATTA+AGG - Chr4:75008332-75008351 MsG0480022646.01.T01:CDS 30.0%
!! AATGGAAACATTGATTTGGA+GGG - Chr4:75007834-75007853 MsG0480022646.01.T01:intron 30.0%
!! TGTCATGTTGGTTAATTTTC+AGG - Chr4:75007638-75007657 MsG0480022646.01.T01:intron 30.0%
!! TTGGTGTTTTGCATGAAAAT+AGG + Chr4:75006952-75006971 None:intergenic 30.0%
!! TTTTTGCAGTCATTTTCATC+AGG - Chr4:75009498-75009517 MsG0480022646.01.T01:CDS 30.0%
!!! GTTTTTTGAAGTTGAGAAAC+TGG + Chr4:75007318-75007337 None:intergenic 30.0%
!!! TTTTATTTTGTCCATGACAC+AGG - Chr4:75009572-75009591 MsG0480022646.01.T01:intron 30.0%
!!! TTTTTCTTTCAGGTTAGACT+TGG - Chr4:75009713-75009732 MsG0480022646.01.T01:intron 30.0%
AATGTTAAACTCGTTGCCAT+AGG - Chr4:75008454-75008473 MsG0480022646.01.T01:intron 35.0%
ACAACTATTGTGACTTTGTG+AGG - Chr4:75007202-75007221 MsG0480022646.01.T01:intron 35.0%
ACCAAAGCAACAGAGTAAAT+AGG + Chr4:75007871-75007890 None:intergenic 35.0%
ACCCCCAATTTCATTCAATT+AGG + Chr4:75008241-75008260 None:intergenic 35.0%
ACTCAGTTTATCTACTTCAC+TGG - Chr4:75007372-75007391 MsG0480022646.01.T01:intron 35.0%
AGTTGGAAAATTATCGCCTT+TGG - Chr4:75009611-75009630 MsG0480022646.01.T01:intron 35.0%
ATGAGAGAGTCTAAATGTGT+TGG - Chr4:75008591-75008610 MsG0480022646.01.T01:intron 35.0%
ATTAGGCCATCAACTAATTG+TGG + Chr4:75007152-75007171 None:intergenic 35.0%
ATTTGTCCAAGACAATCACA+AGG - Chr4:75009993-75010012 MsG0480022646.01.T01:intron 35.0%
CAACAACAAAGATTCCTGTA+CGG + Chr4:75009007-75009026 None:intergenic 35.0%
CAACTATTGTGACTTTGTGA+GGG - Chr4:75007203-75007222 MsG0480022646.01.T01:intron 35.0%
CCCCCAATTTCATTCAATTA+GGG + Chr4:75008240-75008259 None:intergenic 35.0%
CCCTAATTGAATGAAATTGG+GGG - Chr4:75008237-75008256 MsG0480022646.01.T01:intron 35.0%
CTAGTTCATGTACATACCTA+TGG + Chr4:75008473-75008492 None:intergenic 35.0%
CTATGGTAGAGTTGTCAAAA+TGG + Chr4:75006913-75006932 None:intergenic 35.0%
CTCACTTGTGCAATTATTTG+CGG - Chr4:75009107-75009126 MsG0480022646.01.T01:intron 35.0%
CTTGGACAAATTTAACTACC+AGG + Chr4:75009984-75010003 None:intergenic 35.0%
GAATCAGTTGTAAACTTGGT+TGG - Chr4:75008863-75008882 MsG0480022646.01.T01:intron 35.0%
GAGAATAGCGTTTAGGTAAA+AGG - Chr4:75010224-75010243 MsG0480022646.01.T01:intron 35.0%
GCCAAGAAAAGTTATGTAGA+AGG - Chr4:75008354-75008373 MsG0480022646.01.T01:CDS 35.0%
TAAAAAGCAGTAGTGGCAAA+AGG + Chr4:75009300-75009319 None:intergenic 35.0%
TAAAAAGGTCACCTACTTGA+AGG + Chr4:75009557-75009576 None:intergenic 35.0%
TACCTAAACGCTATTCTCAT+TGG + Chr4:75010222-75010241 None:intergenic 35.0%
TAGCAAAGTGTATCTACCAA+AGG + Chr4:75009630-75009649 None:intergenic 35.0%
TATAAGAAGGAACTTGCCTT+TGG + Chr4:75007573-75007592 None:intergenic 35.0%
TCTGCAGTTTCATATGGTTA+TGG - Chr4:75008791-75008810 MsG0480022646.01.T01:intron 35.0%
TGGAGTTGACAAGAACAAAA+AGG - Chr4:75008841-75008860 MsG0480022646.01.T01:intron 35.0%
TTAGGCCATCAACTAATTGT+GGG + Chr4:75007151-75007170 None:intergenic 35.0%
TTTCTTCCTCGTGTTGAATT+TGG - Chr4:75008977-75008996 MsG0480022646.01.T01:intron 35.0%
! ACCTATTTACTCTGTTGCTT+TGG - Chr4:75007867-75007886 MsG0480022646.01.T01:intron 35.0%
! AGTTCCAGCATTGAAAATGT+TGG - Chr4:75007787-75007806 MsG0480022646.01.T01:CDS 35.0%
! CCTGAACTTTTCATTACCTT+CGG - Chr4:75008325-75008344 MsG0480022646.01.T01:CDS 35.0%
! GATTTTGTTCAAGAGGATCA+AGG - Chr4:75010264-75010283 MsG0480022646.01.T01:intron 35.0%
! GTTTTGCATGAAAATAGGGA+TGG + Chr4:75006947-75006966 None:intergenic 35.0%
!! CAATGGAAACATTGATTTGG+AGG - Chr4:75007833-75007852 MsG0480022646.01.T01:intron 35.0%
!! CTTCAGTTCTTGTTATTACC+TGG - Chr4:75008696-75008715 MsG0480022646.01.T01:intron 35.0%
!! CTTGAAGGTACTCTTGTAAT+TGG + Chr4:75009542-75009561 None:intergenic 35.0%
!! GACGTTTATGATTTTGACAC+TGG - Chr4:75008821-75008840 MsG0480022646.01.T01:intron 35.0%
!! GGAGATTTCAAGTTCAAAGA+AGG - Chr4:75007719-75007738 MsG0480022646.01.T01:CDS 35.0%
!! GTGTGGAAAAAGTATTCCAT+AGG - Chr4:75007698-75007717 MsG0480022646.01.T01:intron 35.0%
!! TATAGTTGCTATTTGGACCA+TGG - Chr4:75009884-75009903 MsG0480022646.01.T01:intron 35.0%
!! TATGCTCTTTTGGTTGCTTT+TGG - Chr4:75009782-75009801 MsG0480022646.01.T01:intron 35.0%
!! TTACAAGAGTACCTTCAAGT+AGG - Chr4:75009543-75009562 MsG0480022646.01.T01:intron 35.0%
AAAGAACTGTTCCACTCAAG+GGG + Chr4:75009438-75009457 None:intergenic 40.0%
AAGAGGTGGTGATTAAGGAA+GGG + Chr4:75007544-75007563 None:intergenic 40.0%
AAGCTTATACAGCCACATGA+CGG + Chr4:75010386-75010405 None:intergenic 40.0%
ACATGTAGATGTAGGGGATA+AGG - Chr4:75008280-75008299 MsG0480022646.01.T01:intron 40.0%
AGATAAACTGAGTGAAGTCC+CGG + Chr4:75007365-75007384 None:intergenic 40.0%
AGCAACTCTGCAGTTTCATA+TGG - Chr4:75008785-75008804 MsG0480022646.01.T01:intron 40.0%
AGGATTGTAGCAAGAGGATA+TGG - Chr4:75007282-75007301 MsG0480022646.01.T01:CDS 40.0%
AGTAGAAGAGGTGGTGATTA+AGG + Chr4:75007549-75007568 None:intergenic 40.0%
ATGACAAACATCAAGGTGCA+AGG + Chr4:75007072-75007091 None:intergenic 40.0%
ATTTAGTACAAGGCAGTGCA+AGG - Chr4:75009319-75009338 MsG0480022646.01.T01:CDS 40.0%
CAGTTGTAAACTTGGTTGGA+AGG - Chr4:75008867-75008886 MsG0480022646.01.T01:intron 40.0%
CATAGGTTTATGTGATGCTC+GGG - Chr4:75007952-75007971 MsG0480022646.01.T01:CDS 40.0%
CATGCTTTGTAAAGGACACT+TGG + Chr4:75006971-75006990 None:intergenic 40.0%
CCGAAGGTAATGAAAAGTTC+AGG + Chr4:75008328-75008347 None:intergenic 40.0%
CTCCAATGAGAATAGCGTTT+AGG - Chr4:75010217-75010236 MsG0480022646.01.T01:intron 40.0%
GAAAGAACTGTTCCACTCAA+GGG + Chr4:75009439-75009458 None:intergenic 40.0%
GCATAGGTTTATGTGATGCT+CGG - Chr4:75007951-75007970 MsG0480022646.01.T01:CDS 40.0%
GCATGTGATGACAAACATCA+AGG + Chr4:75007079-75007098 None:intergenic 40.0%
GTTACTGTAGTAACCTTAGG+TGG - Chr4:75007237-75007256 MsG0480022646.01.T01:CDS 40.0%
TACTTTGTATGTGCTTCCAC+CGG - Chr4:75007343-75007362 MsG0480022646.01.T01:intron 40.0%
TAGGCCATCAACTAATTGTG+GGG + Chr4:75007150-75007169 None:intergenic 40.0%
TCAAATGTATGTTGGCCATG+TGG - Chr4:75007113-75007132 MsG0480022646.01.T01:intron 40.0%
TCGGTAATGTCAATGCACAA+AGG + Chr4:75009954-75009973 None:intergenic 40.0%
TGAAAGAACTGTTCCACTCA+AGG + Chr4:75009440-75009459 None:intergenic 40.0%
TGAGAAACAATACTGAACGC+AGG + Chr4:75009091-75009110 None:intergenic 40.0%
TGATGCTCGGGTATGAAATA+AGG - Chr4:75007964-75007983 MsG0480022646.01.T01:CDS 40.0%
TGCAGCTGTAATTACAGTTC+TGG - Chr4:75008080-75008099 MsG0480022646.01.T01:intron 40.0%
TGTTGGAGAGGAAATTCAAG+AGG - Chr4:75007804-75007823 MsG0480022646.01.T01:intron 40.0%
TTAACTACCAGGTTTCCGAT+CGG + Chr4:75009973-75009992 None:intergenic 40.0%
TTATTACCTGGCTCAACTTG+AGG - Chr4:75008708-75008727 MsG0480022646.01.T01:intron 40.0%
TTGAATTTGGAAAGCCGTAC+AGG - Chr4:75008990-75009009 MsG0480022646.01.T01:intron 40.0%
! AAACTAGGTTGTGTTGTTGC+AGG - Chr4:75010081-75010100 MsG0480022646.01.T01:intron 40.0%
! AAGAGCTATATCTTGGCTCT+TGG - Chr4:75010306-75010325 MsG0480022646.01.T01:intron 40.0%
! AGAGCTATATCTTGGCTCTT+GGG - Chr4:75010307-75010326 MsG0480022646.01.T01:intron 40.0%
! CAGCATTGAAAATGTTGGAG+AGG - Chr4:75007792-75007811 MsG0480022646.01.T01:intron 40.0%
! CTCTCCAACATTTTCAATGC+TGG + Chr4:75007794-75007813 None:intergenic 40.0%
! TATTTTGTCCATGACACAGG+TGG - Chr4:75009575-75009594 MsG0480022646.01.T01:intron 40.0%
! TCGCGAGTATAGTTGCTATT+TGG - Chr4:75009877-75009896 MsG0480022646.01.T01:intron 40.0%
! TGTGCATTGACATTACCGAT+CGG - Chr4:75009955-75009974 MsG0480022646.01.T01:intron 40.0%
!! AATTTACCTCAAGTTGAGCC+AGG + Chr4:75008717-75008736 None:intergenic 40.0%
!! CAACCTCACACAAAAGTACT+TGG + Chr4:75010128-75010147 None:intergenic 40.0%
!! TGGATTGGTATTGGCTAGAA+TGG - Chr4:75010177-75010196 MsG0480022646.01.T01:intron 40.0%
!!! ACTGGCTTTTGGATTGGTAT+TGG - Chr4:75010168-75010187 MsG0480022646.01.T01:intron 40.0%
!!! TTTTCTTGGCCTTAATCCGA+AGG + Chr4:75008344-75008363 None:intergenic 40.0%
AAAAAGCCCGGTTGGAAAAC+GGG + Chr4:75006851-75006870 None:intergenic 45.0%
ACCACCTCTTCTACTTCCAA+AGG - Chr4:75007554-75007573 MsG0480022646.01.T01:CDS 45.0%
ACCATTTCGGTTGAGCTATC+AGG - Chr4:75009239-75009258 MsG0480022646.01.T01:CDS 45.0%
ACTTTGTATGTGCTTCCACC+GGG - Chr4:75007344-75007363 MsG0480022646.01.T01:intron 45.0%
AGCTTATACAGCCACATGAC+GGG + Chr4:75010385-75010404 None:intergenic 45.0%
ATCAAGGATGCAATCCTCTC+CGG - Chr4:75010280-75010299 MsG0480022646.01.T01:intron 45.0%
ATGAAATTGGGGGTCAGAGT+AGG - Chr4:75008247-75008266 MsG0480022646.01.T01:intron 45.0%
ATTGCAAGAGACACATGGTG+CGG + Chr4:75006996-75007015 None:intergenic 45.0%
CAAAAAGCCCGGTTGGAAAA+CGG + Chr4:75006852-75006871 None:intergenic 45.0%
CACTAGGATAATGCCACCTA+AGG + Chr4:75007253-75007272 None:intergenic 45.0%
CACTTGCCTTGTGATTGTCT+TGG + Chr4:75010002-75010021 None:intergenic 45.0%
CATGCATTGCAAGAGACACA+TGG + Chr4:75007001-75007020 None:intergenic 45.0%
CATGGAAGGATTGTAGCAAG+AGG - Chr4:75007276-75007295 MsG0480022646.01.T01:CDS 45.0%
CCAAATGCTGCAAAACACAG+AGG + Chr4:75009276-75009295 None:intergenic 45.0%
CCAAGATATAGCTCTTGCAC+CGG + Chr4:75010302-75010321 None:intergenic 45.0%
CCATTTCGGTTGAGCTATCA+GGG - Chr4:75009240-75009259 MsG0480022646.01.T01:CDS 45.0%
CTCTTGCTACAATCCTTCCA+TGG + Chr4:75007278-75007297 None:intergenic 45.0%
CTTAGGTGGCATTATCCTAG+TGG - Chr4:75007251-75007270 MsG0480022646.01.T01:CDS 45.0%
CTTTCAGCATCAATCCTCGT+TGG - Chr4:75009454-75009473 MsG0480022646.01.T01:intron 45.0%
GAAGAGGTGGTGATTAAGGA+AGG + Chr4:75007545-75007564 None:intergenic 45.0%
GCAACTATACTCGCGAAGAA+AGG + Chr4:75009873-75009892 None:intergenic 45.0%
GCACTCACAATACAAGTGAG+AGG + Chr4:75009824-75009843 None:intergenic 45.0%
GCTTACTTATGCCTTGCTCT+CGG - Chr4:75009026-75009045 MsG0480022646.01.T01:intron 45.0%
GGCTTGGAGCCACAATATAA+AGG + Chr4:75008118-75008137 None:intergenic 45.0%
GGCTTTCCAAATTCAACACG+AGG + Chr4:75008986-75009005 None:intergenic 45.0%
GTAGAGTTGTCAAAATGGGC+CGG + Chr4:75006908-75006927 None:intergenic 45.0%
GTGGATGGAGACAAAGAAGT+TGG - Chr4:75009594-75009613 MsG0480022646.01.T01:intron 45.0%
TGAAATATACTACCCGAGCC+AGG + Chr4:75006826-75006845 None:intergenic 45.0%
TGATAGCTCAACCGAAATGG+TGG + Chr4:75009240-75009259 None:intergenic 45.0%
TGCTGTAGTGTCCACCATTT+CGG - Chr4:75009226-75009245 MsG0480022646.01.T01:CDS 45.0%
TGGACCCCACAATTAGTTGA+TGG - Chr4:75007143-75007162 MsG0480022646.01.T01:intron 45.0%
TTAAACCGCACTTGAAGGCT+TGG + Chr4:75008134-75008153 None:intergenic 45.0%
TTATCCTAGTGGTCCATGGA+AGG - Chr4:75007262-75007281 MsG0480022646.01.T01:CDS 45.0%
! AGCTATATCTTGGCTCTTGG+GGG - Chr4:75010309-75010328 MsG0480022646.01.T01:intron 45.0%
! CCTCTGTGTTTTGCAGCATT+TGG - Chr4:75009273-75009292 MsG0480022646.01.T01:CDS 45.0%
! CTTGCCTTTGGAAGTAGAAG+AGG + Chr4:75007561-75007580 None:intergenic 45.0%
! CTTGTCGCTCTATGCTCTTT+TGG - Chr4:75009772-75009791 MsG0480022646.01.T01:intron 45.0%
! GAGCTATATCTTGGCTCTTG+GGG - Chr4:75010308-75010327 MsG0480022646.01.T01:intron 45.0%
! GTGAGGTTGCATGCTTTGTT+TGG - Chr4:75010139-75010158 MsG0480022646.01.T01:intron 45.0%
! GTTAGACTTGGCACTGAAAG+AGG - Chr4:75009725-75009744 MsG0480022646.01.T01:intron 45.0%
! TGGCCAAGTACTTTTGTGTG+AGG - Chr4:75010122-75010141 MsG0480022646.01.T01:intron 45.0%
! TTTCAAGCCCGTTTTCCAAC+CGG - Chr4:75006841-75006860 MsG0480022646.01.T01:exon 45.0%
!! TAACGGGCTTCGAGCTTTAT+CGG + Chr4:75006882-75006901 None:intergenic 45.0%
!!! GGTTGCTTTTGGTCTAAGCA+AGG - Chr4:75009793-75009812 MsG0480022646.01.T01:intron 45.0%
!!! AAAAAATGTAATTTTTAATA+CGG - Chr4:75006769-75006788 MsG0480022646.01.T01:exon 5.0%
ACGAACCATTTCCCCTTGAG+TGG - Chr4:75009424-75009443 MsG0480022646.01.T01:intron 50.0%
AGATGCTCACTCACAGTGAG+AGG + Chr4:75007895-75007914 None:intergenic 50.0%
ATATAGCTCTTGCACCGGAG+AGG + Chr4:75010297-75010316 None:intergenic 50.0%
ATCATGTGCGTTGTGCAGGA+GGG - Chr4:75007743-75007762 MsG0480022646.01.T01:CDS 50.0%
CAATCCTTCCATGGACCACT+AGG + Chr4:75007269-75007288 None:intergenic 50.0%
CAGGTTTCCTGCCTCAATAG+CGG + Chr4:75009072-75009091 None:intergenic 50.0%
CCCTGATAGCTCAACCGAAA+TGG + Chr4:75009243-75009262 None:intergenic 50.0%
CCGGTGCAAGAGCTATATCT+TGG - Chr4:75010299-75010318 MsG0480022646.01.T01:intron 50.0%
CGGTCTTAAACCGCACTTGA+AGG + Chr4:75008139-75008158 None:intergenic 50.0%
CTGTTCCACTCAAGGGGAAA+TGG + Chr4:75009432-75009451 None:intergenic 50.0%
GACATTACCGATCGGAAACC+TGG - Chr4:75009963-75009982 MsG0480022646.01.T01:intron 50.0%
GAGATGTTGTGAAGCCAACG+AGG + Chr4:75009471-75009490 None:intergenic 50.0%
GATGCTCACTCACAGTGAGA+GGG + Chr4:75007894-75007913 None:intergenic 50.0%
GCAGCAGCGTATTTACAGAC+AGG - Chr4:75008635-75008654 MsG0480022646.01.T01:intron 50.0%
GCTTATACAGCCACATGACG+GGG + Chr4:75010384-75010403 None:intergenic 50.0%
GGATGGCAATGCGTACTCTA+TGG + Chr4:75006930-75006949 None:intergenic 50.0%
GGCATTATCCTAGTGGTCCA+TGG - Chr4:75007258-75007277 MsG0480022646.01.T01:CDS 50.0%
GTGCGGTGCATGCTTTGTAA+AGG + Chr4:75006979-75006998 None:intergenic 50.0%
TAAACTGAGTGAAGTCCCGG+TGG + Chr4:75007362-75007381 None:intergenic 50.0%
TCGTTCATTTCCCCGTCATG+TGG - Chr4:75010371-75010390 MsG0480022646.01.T01:intron 50.0%
TTGTCCATGACACAGGTGGA+TGG - Chr4:75009579-75009598 MsG0480022646.01.T01:intron 50.0%
! AACGGGCTTCGAGCTTTATC+GGG + Chr4:75006881-75006900 None:intergenic 50.0%
! CGTTTTCCAACCGGGCTTTT+TGG - Chr4:75006850-75006869 MsG0480022646.01.T01:exon 50.0%
! GCCTTTGGAAGTAGAAGAGG+TGG + Chr4:75007558-75007577 None:intergenic 50.0%
! GCTTCGAGCTTTATCGGGAT+GGG + Chr4:75006876-75006895 None:intergenic 50.0%
! GGAAGGGAGAAGCATATGTG+AGG + Chr4:75007528-75007547 None:intergenic 50.0%
! TCAAAATGGGCCGGCTCTAA+CGG + Chr4:75006899-75006918 None:intergenic 50.0%
! TTCAAGCCCGTTTTCCAACC+GGG - Chr4:75006842-75006861 MsG0480022646.01.T01:exon 50.0%
!! TGCTTTGTTTGGTGCTGCAC+TGG - Chr4:75010150-75010169 MsG0480022646.01.T01:intron 50.0%
!!! TGCTGCACTGGCTTTTGGAT+TGG - Chr4:75010162-75010181 MsG0480022646.01.T01:intron 50.0%
!!! TTTGGTGCTGCACTGGCTTT+TGG - Chr4:75010157-75010176 MsG0480022646.01.T01:intron 50.0%
AGGCATCATGTGCGTTGTGC+AGG - Chr4:75007739-75007758 MsG0480022646.01.T01:CDS 55.0%
CATCATGTGCGTTGTGCAGG+AGG - Chr4:75007742-75007761 MsG0480022646.01.T01:CDS 55.0%
CGGTTGAGCTATCAGGGACT+GGG - Chr4:75009246-75009265 MsG0480022646.01.T01:CDS 55.0%
GCCTTGCTCTCGGCTTCATT+GGG - Chr4:75009036-75009055 MsG0480022646.01.T01:intron 55.0%
GTCTCCATCCACCTGTGTCA+TGG + Chr4:75009586-75009605 None:intergenic 55.0%
GTTGGCCATGTGGCAATGAC+TGG - Chr4:75007123-75007142 MsG0480022646.01.T01:intron 55.0%
TCATGTGCGTTGTGCAGGAG+GGG - Chr4:75007744-75007763 MsG0480022646.01.T01:CDS 55.0%
TCGGCTTCATTGGGCTGACT+TGG - Chr4:75009045-75009064 MsG0480022646.01.T01:intron 55.0%
TCGGTTGAGCTATCAGGGAC+TGG - Chr4:75009245-75009264 MsG0480022646.01.T01:CDS 55.0%
TGCCTTGCTCTCGGCTTCAT+TGG - Chr4:75009035-75009054 MsG0480022646.01.T01:intron 55.0%
TGGCTCCAAGCCTTCAAGTG+CGG - Chr4:75008126-75008145 MsG0480022646.01.T01:intron 55.0%
TTGTGCAGGAGGGGCTGAAT+TGG - Chr4:75007753-75007772 MsG0480022646.01.T01:CDS 55.0%
! CAAAATGGGCCGGCTCTAAC+GGG + Chr4:75006898-75006917 None:intergenic 55.0%
! CGGCTTCATTGGGCTGACTT+GGG - Chr4:75009046-75009065 MsG0480022646.01.T01:intron 55.0%
! GGCTTCGAGCTTTATCGGGA+TGG + Chr4:75006877-75006896 None:intergenic 55.0%
! TGGCACTGAAAGAGGTGCAG+AGG - Chr4:75009733-75009752 MsG0480022646.01.T01:intron 55.0%
ACTTGGGCCGCTATTGAGGC+AGG - Chr4:75009062-75009081 MsG0480022646.01.T01:intron 60.0%
AGCTCGAAGCCCGTTAGAGC+CGG - Chr4:75006886-75006905 MsG0480022646.01.T01:exon 60.0%
GATGGGCCAAAAAGCCCGGT+TGG + Chr4:75006859-75006878 None:intergenic 60.0%
GCCCAATGAAGCCGAGAGCA+AGG + Chr4:75009040-75009059 None:intergenic 60.0%
GGGGTCCAGTCATTGCCACA+TGG + Chr4:75007131-75007150 None:intergenic 60.0%
TCGGGATGGGCCAAAAAGCC+CGG + Chr4:75006863-75006882 None:intergenic 60.0%
!! GCTGACTTGGGCCGCTATTG+AGG - Chr4:75009058-75009077 MsG0480022646.01.T01:intron 60.0%
ATTAGCCCGCGGCCCGTGTA+GGG - Chr4:75006800-75006819 MsG0480022646.01.T01:exon 65.0%
TACCCGAGCCAGGCCCTACA+CGG + Chr4:75006816-75006835 None:intergenic 65.0%
! TACACGGGCCGCGGGCTAAT+GGG + Chr4:75006800-75006819 None:intergenic 65.0%
ACCCGAGCCAGGCCCTACAC+GGG + Chr4:75006815-75006834 None:intergenic 70.0%
CATTAGCCCGCGGCCCGTGT+AGG - Chr4:75006799-75006818 MsG0480022646.01.T01:exon 70.0%
! CTACACGGGCCGCGGGCTAA+TGG + Chr4:75006801-75006820 None:intergenic 70.0%
GCCCGTGTAGGGCCTGGCTC+GGG - Chr4:75006811-75006830 MsG0480022646.01.T01:exon 75.0%
GGCCCGTGTAGGGCCTGGCT+CGG - Chr4:75006810-75006829 MsG0480022646.01.T01:exon 75.0%
! CCAGGCCCTACACGGGCCGC+GGG + Chr4:75006808-75006827 None:intergenic 80.0%
! CGGGCCGGCCCATTAGCCCG+CGG - Chr4:75006789-75006808 MsG0480022646.01.T01:exon 80.0%
! GCCAGGCCCTACACGGGCCG+CGG + Chr4:75006809-75006828 None:intergenic 80.0%
!! CGGGCCGCGGGCTAATGGGC+CGG + Chr4:75006796-75006815 None:intergenic 80.0%
! CCCGCGGCCCGTGTAGGGCC+TGG - Chr4:75006805-75006824 MsG0480022646.01.T01:exon 85.0%
Chromosome Type Strat End Strand Name
Chr4 gene 75006617 75010426 75006617 ID=MsG0480022646.01;
Chr4 mRNA 75006617 75010426 75006617 ID=MsG0480022646.01.T01;Parent=MsG0480022646.01
Chr4 exon 75006617 75007094 75006617 ID=MsG0480022646.01.T01.exon;Parent=MsG0480022646.01.T01
Chr4 CDS 75006930 75007094 75006930 ID=MsG0480022646.01.T01.cds;Parent=MsG0480022646.01.T01
Chr4 CDS 75007208 75007318 75007208 ID=MsG0480022646.01.T01.cds;Parent=MsG0480022646.01.T01
Chr4 exon 75007208 75007318 75007208 ID=MsG0480022646.01.T01.exon;Parent=MsG0480022646.01.T01
Chr4 CDS 75007411 75007449 75007411 ID=MsG0480022646.01.T01.cds;Parent=MsG0480022646.01.T01
Chr4 exon 75007411 75007449 75007411 ID=MsG0480022646.01.T01.exon;Parent=MsG0480022646.01.T01
Chr4 CDS 75007524 75007626 75007524 ID=MsG0480022646.01.T01.cds;Parent=MsG0480022646.01.T01
Chr4 exon 75007524 75007626 75007524 ID=MsG0480022646.01.T01.exon;Parent=MsG0480022646.01.T01
Chr4 CDS 75007703 75007809 75007703 ID=MsG0480022646.01.T01.cds;Parent=MsG0480022646.01.T01
Chr4 exon 75007703 75007809 75007703 ID=MsG0480022646.01.T01.exon;Parent=MsG0480022646.01.T01
Chr4 CDS 75007901 75008039 75007901 ID=MsG0480022646.01.T01.cds;Parent=MsG0480022646.01.T01
Chr4 exon 75007901 75008039 75007901 ID=MsG0480022646.01.T01.exon;Parent=MsG0480022646.01.T01
Chr4 CDS 75008155 75008226 75008155 ID=MsG0480022646.01.T01.cds;Parent=MsG0480022646.01.T01
Chr4 exon 75008155 75008226 75008155 ID=MsG0480022646.01.T01.exon;Parent=MsG0480022646.01.T01
Chr4 CDS 75008314 75008417 75008314 ID=MsG0480022646.01.T01.cds;Parent=MsG0480022646.01.T01
Chr4 exon 75008314 75008417 75008314 ID=MsG0480022646.01.T01.exon;Parent=MsG0480022646.01.T01
Chr4 CDS 75009143 75009383 75009143 ID=MsG0480022646.01.T01.cds;Parent=MsG0480022646.01.T01
Chr4 exon 75009143 75009383 75009143 ID=MsG0480022646.01.T01.exon;Parent=MsG0480022646.01.T01
Chr4 CDS 75009464 75009549 75009464 ID=MsG0480022646.01.T01.cds;Parent=MsG0480022646.01.T01
Chr4 exon 75009464 75009549 75009464 ID=MsG0480022646.01.T01.exon;Parent=MsG0480022646.01.T01
Chr4 CDS 75009740 75009742 75009740 ID=MsG0480022646.01.T01.cds;Parent=MsG0480022646.01.T01
Chr4 exon 75009740 75009787 75009740 ID=MsG0480022646.01.T01.exon;Parent=MsG0480022646.01.T01
Chr4 exon 75010382 75010426 75010382 ID=MsG0480022646.01.T01.exon;Parent=MsG0480022646.01.T01
Gene Sequence

>MsG0480022646.01.T01

ATGAAGAAGATTAAATGGCTATCACGTGCTGTAACCTCACATATGCTTCTCCCTTCCTTAATCACCACCTCTTCTACTTCCAAAGGCAAGTGTCATGTAGTTTCCAAAAGTTTAAAATGTAGTGGTAGTGTGGAAAAAGTATTCCATAGGAGATTTCAAGTTCAAAGAAGGCATCATGTGCGTTGTGCAGGAGGGGCTGAATTGGCTTCTTCTTCTAGTTCCAGCATTGAAAATGTTGGAGAGGAAATTCAAGAGGATATTTCAATGGAAACATTGATTTGGAGGGCTATCAAGTTACCTATTTACTCTGTTGCTTTGGTCCCTCTCACTGTAGGCAGTGCAGCAGCGTATTTACAGACAGGCATCTTCACAGCTAAATGCTATTTTGTTTTATTGGCTTCTTCAGTTCTTGTTATTACCTGGCTCAACTTGAGCAATGACGTTTATGATTTTGACACTGGAGTTGACAAGAACAAAAAGGAATCAGTTGTAAACTTGGTTGGAAGCCGTACAGGAATCTTTGTTGTTGCTTACTTATGCCTTGCTCTCGGCTTCATTGGGCTGACTTGGGCCGCTATTGAGGCAGGAAACCTGCGTTCAGTATTGTTTCTCACTTGTGCAATTATTTGCGGCTATATATATCAGTGTCCACCATTTCGGTTGAGCTATCAGGGACTGGGAGAGCCTCTGTGTTTTGCAGCATTTGGTCCTTTTGCCACTACTGCTTTTTATTTAGTACAAGGCAGTGCAAGTAGCGTGACGAACCATTTCCCCTTGAGTGGAACAGTTCTTTCAGCATCAATCCTCGTTGGCTTCACAACATCTCTTATCCTTTTTTGCAGTCATTTTCATCAGGTGGATGGAGACAAAGAAGTTGGAAAATTATCGCCTTTGGTTAGACTTGGCACTGAAAGAGGTGCAGAGGTAGTGAAAGTAGCAGTCTTGTCGCTCTATGCTCTTTTGGTTGCTTTTGGTCTAAGCAAGGCACTTCCTCTCACTTGTATTTTCCTTTGTGCATTGACATTACCGATCGGAAACCTGGTAGTTAAATTTGTCCAAGACAATCACAAGGCAAGTGAAAAACTGTTGTTGAGTCTTTGTTATACTAATATATTTTCTAGAGTTCTTTTTATATTAAAACTAGGTTGTGTTGTTGCAGGACAAAGATAA

Protein sequence

>MsG0480022646.01.T01

MKKIKWLSRAVTSHMLLPSLITTSSTSKGKCHVVSKSLKCSGSVEKVFHRRFQVQRRHHVRCAGGAELASSSSSSIENVGEEIQEDISMETLIWRAIKLPIYSVALVPLTVGSAAAYLQTGIFTAKCYFVLLASSVLVITWLNLSNDVYDFDTGVDKNKKESVVNLVGSRTGIFVVAYLCLALGFIGLTWAAIEAGNLRSVLFLTCAIICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLVQGSASSVTNHFPLSGTVLSASILVGFTTSLILFCSHFHQVDGDKEVGKLSPLVRLGTERGAEVVKVAVLSLYALLVAFGLSKALPLTCIFLCALTLPIGNLVVKFVQDNHKASEKLLLSLCYTNIFSRVLFILKLGCVVAGQR*