AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380011870.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011870.01.T01 MTR_6g464080 70.483 559 150 5 1 548 1 555 0.0 801
MsG0380011870.01.T01 MTR_8g076570 59.237 498 182 4 1 487 1 488 0.0 591
MsG0380011870.01.T01 MTR_2g060880 53.215 451 197 6 13 456 39 482 1.23e-151 444
MsG0380011870.01.T01 MTR_8g469790 65.500 200 45 2 200 392 360 542 3.03e-85 275
MsG0380011870.01.T01 MTR_8g469790 65.455 110 36 1 29 138 253 360 7.69e-40 152
MsG0380011870.01.T01 MTR_3g117130 48.770 244 73 3 39 275 1 199 4.80e-69 224
MsG0380011870.01.T01 MTR_5g004860 31.019 432 280 8 1 417 1 429 1.10e-65 223
MsG0380011870.01.T01 MTR_2g450060 27.895 570 383 12 1 548 5 568 2.56e-65 223
MsG0380011870.01.T01 MTR_1g011320 79.339 121 24 1 48 168 62 181 1.22e-60 202
MsG0380011870.01.T01 MTR_3g055660 26.786 448 313 5 1 434 28 474 1.86e-58 204
MsG0380011870.01.T01 MTR_4g014890 26.577 444 291 5 1 420 28 460 3.25e-58 202
MsG0380011870.01.T01 MTR_4g085760 29.655 435 287 7 1 418 7 439 6.41e-56 197
MsG0380011870.01.T01 MTR_6g059860 26.134 463 294 8 1 434 22 465 1.38e-53 190
MsG0380011870.01.T01 MTR_1g043690 28.211 475 307 11 2 460 9 465 6.96e-51 185
MsG0380011870.01.T01 MTR_6g011130 64.122 131 43 1 39 169 1 127 1.11e-50 171
MsG0380011870.01.T01 MTR_3g112110 49.405 168 44 2 1 168 1 127 1.93e-47 162
MsG0380011870.01.T01 MTR_5g053590 29.471 397 257 5 1 376 1 395 9.43e-44 163
MsG0380011870.01.T01 MTR_0003s0290 28.306 431 243 11 1 417 1 379 3.39e-43 160
MsG0380011870.01.T01 MTR_0010s0110 56.618 136 37 2 2 137 28 141 2.60e-42 149
MsG0380011870.01.T01 MTR_3g082920 67.273 110 29 1 324 433 223 325 9.39e-41 153
MsG0380011870.01.T01 MTR_5g041170 27.824 363 237 9 116 455 17 377 7.31e-40 150
MsG0380011870.01.T01 MTR_3g436230 59.292 113 42 1 58 170 41 149 1.63e-39 141
MsG0380011870.01.T01 MTR_2g021620 63.000 100 36 1 275 373 40 139 1.74e-36 137
MsG0380011870.01.T01 MTR_7g450880 29.897 291 188 6 108 383 10 299 4.85e-34 131
MsG0380011870.01.T01 MTR_5g044110 60.417 96 34 1 45 140 6 97 3.55e-32 122
MsG0380011870.01.T01 MTR_4g054090 46.763 139 28 2 30 168 1 93 3.79e-30 117
MsG0380011870.01.T01 MTR_2g437520 69.333 75 23 0 1 75 1 75 4.84e-30 117
MsG0380011870.01.T01 MTR_8g069780 64.557 79 24 1 25 103 1 75 6.17e-28 109
MsG0380011870.01.T01 MTR_6g007480 94.118 51 3 0 1 51 1 51 1.08e-27 105
MsG0380011870.01.T01 MTR_6g055250 27.632 304 198 10 41 327 1 299 7.09e-25 107
MsG0380011870.01.T01 MTR_6g088820 67.692 65 17 1 39 103 1 61 7.48e-24 97.8
MsG0380011870.01.T01 MTR_8g027910 28.295 258 159 7 1 239 11 261 7.07e-23 98.6
MsG0380011870.01.T01 MTR_1g092930 39.683 126 75 1 1 126 1 125 9.67e-23 100
MsG0380011870.01.T01 MTR_7g025160 34.932 146 93 2 1 146 11 154 1.57e-22 97.4
MsG0380011870.01.T01 MTR_2g055290 33.133 166 87 1 1 166 1 142 1.24e-21 92.8
MsG0380011870.01.T01 MTR_1g092990 37.692 130 79 2 1 129 1 129 3.35e-21 96.3
MsG0380011870.01.T01 MTR_3g072780 72.222 54 15 0 1 54 1 54 1.25e-20 86.7
MsG0380011870.01.T01 MTR_7g110100 21.720 465 329 12 19 459 19 472 1.56e-20 95.5
MsG0380011870.01.T01 MTR_2g105310 72.222 54 15 0 1 54 1 54 2.36e-20 85.9
MsG0380011870.01.T01 MTR_1g062890 32.143 140 95 0 238 377 198 337 8.27e-20 92.0
MsG0380011870.01.T01 MTR_1g062890 28.655 171 120 2 1 171 22 190 8.12e-16 79.7
MsG0380011870.01.T01 MTR_6g075940 68.519 54 17 0 1 54 1 54 1.19e-19 84.0
MsG0380011870.01.T01 MTR_4g036240 23.841 453 283 17 1 417 1 427 1.33e-19 92.8
MsG0380011870.01.T01 MTR_8g107180 50.538 93 29 3 45 137 5 80 2.64e-19 85.1
MsG0380011870.01.T01 MTR_1g105785 23.155 393 272 13 19 393 19 399 2.67e-19 91.7
MsG0380011870.01.T01 MTR_2g048560 20.833 456 335 12 1 437 1 449 5.35e-19 90.9
MsG0380011870.01.T01 MTR_0038s0050 68.519 54 17 0 1 54 1 54 6.03e-19 81.6
MsG0380011870.01.T01 MTR_0009s0190 74.468 47 12 0 1 47 32 78 2.26e-17 78.6
MsG0380011870.01.T01 MTR_8g077490 29.371 143 93 2 3 138 51 192 2.37e-16 79.0
MsG0380011870.01.T01 MTR_6g045290 31.361 169 103 4 10 166 256 423 2.38e-16 82.0
MsG0380011870.01.T01 MTR_3g452170 23.899 318 210 12 19 315 19 325 2.40e-16 82.0
MsG0380011870.01.T01 MTR_4g073560 44.565 92 33 4 155 232 2 89 6.04e-15 73.9
MsG0380011870.01.T01 MTR_6g477950 33.577 137 88 3 1 136 180 314 7.15e-15 76.3
MsG0380011870.01.T01 MTR_4g073560 44.565 92 33 4 155 232 2 89 1.20e-14 71.6
MsG0380011870.01.T01 MTR_6g477970 32.353 136 90 2 1 136 1 134 1.41e-14 71.2
MsG0380011870.01.T01 MTR_1g041830 32.456 114 75 2 1 114 3 114 2.40e-14 70.1
MsG0380011870.01.T01 MTR_7g052740 33.594 128 83 2 19 146 90 215 8.91e-14 73.2
MsG0380011870.01.T01 MTR_8g076180 29.452 146 84 2 1 146 1 127 9.02e-14 71.6
MsG0380011870.01.T01 MTR_4g058660 26.271 236 161 5 39 263 42 275 1.65e-13 72.0
MsG0380011870.01.T01 MTR_7g451880 27.426 237 157 6 39 263 43 276 4.92e-13 70.9
MsG0380011870.01.T01 MTR_4g070160 36.697 109 59 3 63 166 5 108 1.71e-12 67.4
MsG0380011870.01.T01 MTR_2g048550 23.204 362 242 13 23 361 23 371 2.31e-12 69.7
MsG0380011870.01.T01 MTR_7g105760 53.333 60 28 0 405 464 45 104 7.61e-12 66.2
MsG0380011870.01.T01 MTR_3g114950 35.211 71 44 1 16 84 7 77 2.36e-11 60.1
MsG0380011870.01.T01 MTR_3g114950 35.211 71 44 1 16 84 11 81 2.59e-11 60.1
MsG0380011870.01.T01 MTR_6g465570 30.464 151 94 5 23 166 19 165 2.92e-11 62.8
MsG0380011870.01.T01 MTR_2g010270 25.820 244 161 5 39 263 23 265 2.94e-11 65.1
MsG0380011870.01.T01 MTR_1g093010 30.952 126 64 2 1 126 1 103 4.54e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 108 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATTTGACTTTGAGGATTT+TGG 0.092896 3:-6683063 None:intergenic
GAAGTAGATGTTTGGAAAAT+TGG 0.108071 3:+6680999 MsG0380011870.01.T01:CDS
TCCATCTTCGATCTCTTTAA+AGG 0.174897 3:-6681439 None:intergenic
CATACCATACAAACGGAAAT+TGG 0.200537 3:-6685398 None:intergenic
TCCAGTTGTTGAAAGGTTTA+AGG 0.210197 3:+6682037 MsG0380011870.01.T01:CDS
AATGCATTTGGCCAACTTAT+TGG 0.232159 3:-6685895 None:intergenic
TAAGGAGTGTGTTCGAATTC+TGG 0.240357 3:+6683303 MsG0380011870.01.T01:CDS
GCATGTTGATCATCCATTTA+AGG 0.259001 3:+6681338 MsG0380011870.01.T01:CDS
CATATGCTGGTTACCATTAC+TGG 0.259053 3:-6681054 None:intergenic
AAGCCAAAGACCACCTTAAA+TGG 0.271688 3:-6681351 None:intergenic
CATCCATTTAAGGTGGTCTT+TGG 0.273788 3:+6681348 MsG0380011870.01.T01:CDS
TGAGACCAATTGGTGAATTT+AGG 0.274460 3:+6682857 MsG0380011870.01.T01:CDS
AAGTTTAACCCTAACCAATT+TGG 0.292870 3:+6683012 MsG0380011870.01.T01:CDS
TCTCATAATACCAGCCAAAT+TGG 0.315320 3:-6683026 None:intergenic
AGCCAAATGTTTGCAACAAT+TGG 0.320341 3:+6681982 MsG0380011870.01.T01:CDS
TCACTCTTTCTTAATGCATT+TGG 0.328620 3:-6685907 None:intergenic
GATTCAGAGTTCTTGATTCA+TGG 0.328645 3:+6681021 MsG0380011870.01.T01:CDS
TTATTGGAAGATGGCTGAAT+TGG 0.330960 3:-6685879 None:intergenic
AAGACATCGGTGTTTGGATC+TGG 0.341443 3:+6681607 MsG0380011870.01.T01:CDS
GCCTTAAACCTTTCAACAAC+TGG 0.348036 3:-6682038 None:intergenic
GTCCAATTGTTGCAAACATT+TGG 0.348125 3:-6681984 None:intergenic
TTTAAGGTGGTCTTTGGCTT+AGG 0.354934 3:+6681354 MsG0380011870.01.T01:CDS
TAATACCAGCCAAATTGGTT+AGG 0.365244 3:-6683021 None:intergenic
CCATCTTCGATCTCTTTAAA+GGG 0.366521 3:-6681438 None:intergenic
GAAACCAATTTCCGTTTGTA+TGG 0.370165 3:+6685394 MsG0380011870.01.T01:CDS
CATGCCCAATGCAAGCTTGC+AGG 0.375190 3:+6681863 MsG0380011870.01.T01:intron
ACAGATGACTGATGATAATA+TGG 0.377331 3:-6684669 None:intergenic
TAGGATTCTGTCCCTGTGTC+CGG 0.377852 3:+6685762 MsG0380011870.01.T01:intron
GCTACCAACATTTGACTTTG+AGG 0.378825 3:-6683070 None:intergenic
CTCTCTCAAGTGAGACCAAT+TGG 0.387838 3:+6682847 MsG0380011870.01.T01:CDS
TTCATCTTTGAGCACAAGAT+TGG 0.410961 3:-6681644 None:intergenic
AGCAAATTGTCTAAATGCTT+GGG 0.414510 3:-6684612 None:intergenic
AGATTCCTAAATTCACCAAT+TGG 0.425203 3:-6682862 None:intergenic
CCTCGGATCCTGCTGTCATT+CGG 0.427784 3:+6684703 MsG0380011870.01.T01:CDS
AAGGAGTGTGTTCGAATTCT+GGG 0.430268 3:+6683304 MsG0380011870.01.T01:CDS
TAGGTAAACAACCTTGTCAA+TGG 0.434285 3:-6683126 None:intergenic
ATCGTGAAGACATCGGTGTT+TGG 0.437694 3:+6681601 MsG0380011870.01.T01:CDS
AAGCAAATTGTCTAAATGCT+TGG 0.439088 3:-6684613 None:intergenic
GTGAAGGTTCAAGTTCTTCT+CGG 0.442867 3:+6682797 MsG0380011870.01.T01:CDS
AATCAAATTTACCTCTTGCA+TGG 0.446092 3:-6683353 None:intergenic
CCGTACCTCGCAATTTGATC+TGG 0.446184 3:-6685795 None:intergenic
CAGCATATGGAACTCATCAT+TGG 0.451053 3:+6681068 MsG0380011870.01.T01:CDS
CTGAATTGGATCACAATCAT+TGG 0.453953 3:-6685865 None:intergenic
AAATGCTTGGGATATATCAT+AGG 0.458743 3:-6684600 None:intergenic
GTCTGTGAAAGTTGAGCAGC+TGG 0.466953 3:+6685352 MsG0380011870.01.T01:CDS
ATTGTGCACAATAATCCAAC+TGG 0.467134 3:+6684886 MsG0380011870.01.T01:CDS
CAGGGTTGTCAATAATGTCT+AGG 0.474210 3:+6680946 None:intergenic
AATACCAGCCAAATTGGTTA+GGG 0.478339 3:-6683020 None:intergenic
AGGATTCTGTCCCTGTGTCC+GGG 0.480090 3:+6685763 MsG0380011870.01.T01:intron
TTGGCCAACTTATTGGAAGA+TGG 0.482690 3:-6685888 None:intergenic
GTTTGTGGATTTAGGGTGAC+CGG 0.484469 3:+6681202 MsG0380011870.01.T01:intron
TATCATCAGTCATCTGTTCA+AGG 0.485097 3:+6684675 MsG0380011870.01.T01:CDS
TCAGCCATCTTCCAATAAGT+TGG 0.487273 3:+6685884 MsG0380011870.01.T01:CDS
GCATCTGACTGCATCCCATC+AGG 0.490811 3:-6684747 None:intergenic
AGTCAAATGTTGGTAGCTAT+AGG 0.491911 3:+6683076 MsG0380011870.01.T01:CDS
CCCTTTAAAGAGATCGAAGA+TGG 0.494647 3:+6681438 MsG0380011870.01.T01:CDS
AGACATCGGTGTTTGGATCT+GGG 0.495192 3:+6681608 MsG0380011870.01.T01:CDS
AAGCATTTAGACAATTTGCT+TGG 0.495813 3:+6684615 MsG0380011870.01.T01:CDS
CTTAAATCTGAATTCATGAG+AGG 0.502863 3:-6681415 None:intergenic
TTAACCCTAACCAATTTGGC+TGG 0.503951 3:+6683016 MsG0380011870.01.T01:CDS
CAGTAATGGTAACCAGCATA+TGG 0.506482 3:+6681055 MsG0380011870.01.T01:CDS
CAAGCTCAAGGTCATGCCCT+TGG 0.507346 3:+6682763 MsG0380011870.01.T01:CDS
CAATTTGCTTGGCCTTGAGT+TGG 0.513222 3:+6684626 MsG0380011870.01.T01:CDS
TCATGCTCAAATGATCCAGT+TGG 0.513284 3:-6684901 None:intergenic
TTGTTGAAAGGTTTAAGGCT+AGG 0.513449 3:+6682042 MsG0380011870.01.T01:CDS
TGAATTTAGGAATCTGATGC+AGG 0.515794 3:+6682870 MsG0380011870.01.T01:CDS
CGAAGATGGAAATTTCAAAC+CGG 0.517248 3:+6681452 MsG0380011870.01.T01:CDS
TCAACTTTCACAGACACAGC+TGG 0.517449 3:-6685344 None:intergenic
CAATGATGAGTTCCATATGC+TGG 0.522839 3:-6681067 None:intergenic
AAGCAGCACCTTCATCCTGA+TGG 0.525272 3:+6684732 MsG0380011870.01.T01:CDS
TGAAGCATCCAGTTGTTGAA+AGG 0.528841 3:+6682030 MsG0380011870.01.T01:CDS
TGGATTGTCACTGCCAGTAA+TGG 0.533457 3:+6681041 MsG0380011870.01.T01:CDS
AATGTTTGCAACAATTGGAC+CGG 0.539811 3:+6681987 MsG0380011870.01.T01:CDS
ATCGAGTTATAGCATGAATC+CGG 0.540072 3:-6681221 None:intergenic
GGTCACAAAGAATGTAAAGC+TGG 0.541398 3:+6681383 MsG0380011870.01.T01:CDS
TTAATCTTCCGAATGACAGC+AGG 0.549007 3:-6684711 None:intergenic
GCTATACCATACAAAACATC+CGG 0.549064 3:-6681471 None:intergenic
GTGTTGACATACCATACAAA+CGG 0.553512 3:-6685405 None:intergenic
ACTGCATCCCATCAGGATGA+AGG 0.554968 3:-6684740 None:intergenic
AGGGTTGTCAATAATGTCTA+GGG 0.555098 3:+6680947 None:intergenic
AGTTGCATACGATGGTGATA+AGG 0.558163 3:+6683261 MsG0380011870.01.T01:CDS
GATGCAAAGACCTTGAGCAT+TGG 0.560041 3:+6681241 MsG0380011870.01.T01:CDS
CCAGATCAAATTGCGAGGTA+CGG 0.564342 3:+6685795 MsG0380011870.01.T01:CDS
AAATTGGTTAGGGTTAAACT+TGG 0.570252 3:-6683010 None:intergenic
AGCAGCACCTTCATCCTGAT+GGG 0.576139 3:+6684733 MsG0380011870.01.T01:CDS
AAATCCTCAAAGTCAAATGT+TGG 0.581203 3:+6683066 MsG0380011870.01.T01:CDS
TTAATGACTTCCAATGCTCA+AGG 0.603725 3:-6681251 None:intergenic
GAAAACAGCTTCAATTCCTG+TGG 0.606380 3:+6684951 MsG0380011870.01.T01:CDS
ACTCATCATTGGAGATGCCA+AGG 0.607700 3:+6681079 MsG0380011870.01.T01:CDS
TCACACGCAACGCCAACTCA+AGG 0.608638 3:-6684638 None:intergenic
CTTGGTCGTACTCTGTGTGA+AGG 0.614668 3:+6682781 MsG0380011870.01.T01:CDS
GGTCTTTGGCTTAGGTACAA+AGG 0.616916 3:+6681362 MsG0380011870.01.T01:CDS
TCTTAGAAAGTCCATGCAAG+AGG 0.617395 3:+6683342 MsG0380011870.01.T01:CDS
TTAAATCTGAATTCATGAGA+GGG 0.618237 3:-6681414 None:intergenic
AGATGCGCAACAAGTTGATG+AGG 0.625591 3:+6684764 MsG0380011870.01.T01:CDS
CTATAGGTGCTCATGTGGAG+AGG 0.627653 3:+6683092 MsG0380011870.01.T01:CDS
TGTTGATCATCCATTTAAGG+TGG 0.630523 3:+6681341 MsG0380011870.01.T01:CDS
CCGAATGACAGCAGGATCCG+AGG 0.636322 3:-6684703 None:intergenic
TTCACACAGAGTACGACCAA+GGG 0.640430 3:-6682779 None:intergenic
GGATTCTGTCCCTGTGTCCG+GGG 0.646932 3:+6685764 MsG0380011870.01.T01:intron
ATGTTGATGTTCCATTGACA+AGG 0.651678 3:+6683115 MsG0380011870.01.T01:CDS
GGTAGCTATAGGTGCTCATG+TGG 0.656685 3:+6683087 MsG0380011870.01.T01:CDS
TTTGAGCATGAGAAGATCAG+TGG 0.661704 3:+6684913 MsG0380011870.01.T01:CDS
TCATGAGATCGTGAAGACAT+CGG 0.662291 3:+6681594 MsG0380011870.01.T01:CDS
TTGAGCACAAGATTGGTACA+CGG 0.672007 3:-6681637 None:intergenic
CTTCACACAGAGTACGACCA+AGG 0.677015 3:-6682780 None:intergenic
ATGTTCCAGATCAAATTGCG+AGG 0.695756 3:+6685790 MsG0380011870.01.T01:CDS
GTTGTGCAAGTTGCATACGA+TGG 0.722818 3:+6683253 MsG0380011870.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAATTTAATATTCATTATT+TGG - Chr3:6685129-6685148 None:intergenic 10.0%
!! ATGAATAAACATAATTATAT+AGG - Chr3:6684561-6684580 None:intergenic 10.0%
!!! AAATTCAAACTATTTTTTTT+AGG - Chr3:6682431-6682450 None:intergenic 10.0%
!!! TATTTTTTTTATCAGATATA+AGG + Chr3:6683228-6683247 MsG0380011870.01.T01:intron 10.0%
!! ATAATTATGTTTATTCATGA+AGG + Chr3:6684563-6684582 MsG0380011870.01.T01:intron 15.0%
!! ATACTAATGAAAAATGTATA+AGG - Chr3:6684384-6684403 None:intergenic 15.0%
!! ATATATGTATAAATCATGAA+AGG + Chr3:6684123-6684142 MsG0380011870.01.T01:intron 15.0%
!! TACTAATGAAAAATGTATAA+GGG - Chr3:6684383-6684402 None:intergenic 15.0%
!! TATATGTATAAATCATGAAA+GGG + Chr3:6684124-6684143 MsG0380011870.01.T01:intron 15.0%
!!! AAACATATTTCTAATTTATG+GGG + Chr3:6685567-6685586 MsG0380011870.01.T01:intron 15.0%
!!! ACAAACATATTTCTAATTTA+TGG + Chr3:6685565-6685584 MsG0380011870.01.T01:intron 15.0%
!!! ATATAGAACATTTAAAATTG+TGG + Chr3:6683568-6683587 MsG0380011870.01.T01:intron 15.0%
!!! CAAACATATTTCTAATTTAT+GGG + Chr3:6685566-6685585 MsG0380011870.01.T01:intron 15.0%
!!! TAAATTTCAAACTATTTTAG+CGG - Chr3:6682408-6682427 None:intergenic 15.0%
!!! TGTTTAAATTTGTTTGTTTT+TGG + Chr3:6681507-6681526 MsG0380011870.01.T01:intron 15.0%
!!! TTAAATTCTAAATTTTTGCA+TGG + Chr3:6685140-6685159 MsG0380011870.01.T01:intron 15.0%
!!! TTATACATGAAGATATTTTT+TGG + Chr3:6682903-6682922 MsG0380011870.01.T01:intron 15.0%
!!! TTGTTTTTGGTTTTTTAATT+GGG + Chr3:6681520-6681539 MsG0380011870.01.T01:intron 15.0%
!!! TTTGATTGTAAACTTTATTT+TGG + Chr3:6683369-6683388 MsG0380011870.01.T01:intron 15.0%
!!! TTTGTTTTTGGTTTTTTAAT+TGG + Chr3:6681519-6681538 MsG0380011870.01.T01:intron 15.0%
!! AACTAATCACATAAAAGTTT+AGG - Chr3:6683148-6683167 None:intergenic 20.0%
!! AAGTTTACAGACTTATAAAA+GGG + Chr3:6684171-6684190 MsG0380011870.01.T01:intron 20.0%
!! AGTATCAAAAATGGAAAATA+AGG + Chr3:6682202-6682221 MsG0380011870.01.T01:intron 20.0%
!! GAGAAAATTACTATTAATTG+AGG + Chr3:6683601-6683620 MsG0380011870.01.T01:intron 20.0%
!! GTGTATTCAAAAATAAAGTA+AGG - Chr3:6682369-6682388 None:intergenic 20.0%
!! TAATGAAAAATCTGATTGTT+TGG + Chr3:6684148-6684167 MsG0380011870.01.T01:intron 20.0%
!! TATATTACTTTACTGTTTAG+TGG - Chr3:6683776-6683795 None:intergenic 20.0%
!!! AACATATTTCTAATTTATGG+GGG + Chr3:6685568-6685587 MsG0380011870.01.T01:intron 20.0%
!!! AATGATTTTGATCTACATAT+AGG + Chr3:6685438-6685457 MsG0380011870.01.T01:intron 20.0%
!!! ATGTATTTTTCTTTTGTTTG+TGG + Chr3:6681187-6681206 MsG0380011870.01.T01:intron 20.0%
!!! GGTATGTTTACATTATTTTT+TGG + Chr3:6684972-6684991 MsG0380011870.01.T01:intron 20.0%
!!! TCATAAACATTTTCTCTTTT+TGG + Chr3:6682653-6682672 MsG0380011870.01.T01:intron 20.0%
!!! TGAAGATATTTTTTGGTATT+TGG + Chr3:6682910-6682929 MsG0380011870.01.T01:intron 20.0%
!!! TGTTCTTATTTTTCAGATAA+CGG + Chr3:6681957-6681976 MsG0380011870.01.T01:CDS 20.0%
!!! TTAATTCGTTTCATTGTTTT+TGG + Chr3:6681913-6681932 MsG0380011870.01.T01:CDS 20.0%
!!! TTTTTTTATCAGATATAAGG+TGG + Chr3:6683231-6683250 MsG0380011870.01.T01:intron 20.0%
! AAAAAAATGAGGGTTCAAAA+AGG - Chr3:6684219-6684238 None:intergenic 25.0%
! AAAAAATGAGGGTTCAAAAA+GGG - Chr3:6684218-6684237 None:intergenic 25.0%
! AAAGGGAACAAAAAAAAATG+AGG - Chr3:6684230-6684249 None:intergenic 25.0%
! AAATAATGTAAACATACCAC+AGG - Chr3:6684970-6684989 None:intergenic 25.0%
! AACAGAATATTTATCCCATA+AGG - Chr3:6681776-6681795 None:intergenic 25.0%
! AAGGGAACAAAAAAAAATGA+GGG - Chr3:6684229-6684248 None:intergenic 25.0%
! ATCAAAATATCATGGACATA+TGG + Chr3:6683691-6683710 MsG0380011870.01.T01:intron 25.0%
! ATCAATTAATCATCCAAACA+GGG + Chr3:6684320-6684339 MsG0380011870.01.T01:intron 25.0%
! ATGAAAAATGTATAAGGGAA+TGG - Chr3:6684378-6684397 None:intergenic 25.0%
! CTTTATGTTAATCACACTAA+TGG + Chr3:6685100-6685119 MsG0380011870.01.T01:intron 25.0%
! GAAGTTTACAGACTTATAAA+AGG + Chr3:6684170-6684189 MsG0380011870.01.T01:intron 25.0%
! GCTAAATTTAAGTCACAAAA+GGG + Chr3:6683742-6683761 MsG0380011870.01.T01:intron 25.0%
! GTATTGAATATCAAAGGAAA+AGG + Chr3:6683397-6683416 MsG0380011870.01.T01:intron 25.0%
! TAAGTTATTATTTGGGAAAG+TGG + Chr3:6682065-6682084 MsG0380011870.01.T01:intron 25.0%
! TGAAAAAAGAAGTAGATGTT+TGG + Chr3:6680991-6681010 MsG0380011870.01.T01:CDS 25.0%
! TGAAAGAAACATTTGTCAAT+AGG + Chr3:6685676-6685695 MsG0380011870.01.T01:intron 25.0%
! TGAGTTAATATTAAGACAAC+AGG - Chr3:6681838-6681857 None:intergenic 25.0%
! TTAAATCTGAATTCATGAGA+GGG - Chr3:6681417-6681436 None:intergenic 25.0%
! TTCAGACAATCAAAATATCA+TGG + Chr3:6683683-6683702 MsG0380011870.01.T01:intron 25.0%
!! ACACACTAAAACTTTTGTAA+TGG - Chr3:6682478-6682497 None:intergenic 25.0%
!! ATCGCAAAATGATGAATTTT+CGG + Chr3:6682822-6682841 MsG0380011870.01.T01:CDS 25.0%
!! ATTGAGGTTTTCTAATTCAA+TGG + Chr3:6683617-6683636 MsG0380011870.01.T01:intron 25.0%
!! ATTGTCATTTCCTATATTTG+AGG + Chr3:6683645-6683664 MsG0380011870.01.T01:intron 25.0%
!! GAAGATATAGCTTATGTTTT+TGG + Chr3:6685703-6685722 MsG0380011870.01.T01:intron 25.0%
!! TTGTCATTTCCTATATTTGA+GGG + Chr3:6683646-6683665 MsG0380011870.01.T01:intron 25.0%
!!! AGTGAATGTGTTTTTTTAGT+AGG + Chr3:6683467-6683486 MsG0380011870.01.T01:intron 25.0%
!!! ATTTTGATCTACATATAGGA+TGG + Chr3:6685442-6685461 MsG0380011870.01.T01:intron 25.0%
!!! GTTCTTATTTTTCAGATAAC+GGG + Chr3:6681958-6681977 MsG0380011870.01.T01:CDS 25.0%
!!! GTTTTAGTGTGTTATAAAGA+TGG + Chr3:6682486-6682505 MsG0380011870.01.T01:intron 25.0%
!!! TATTTAATTTTTTGCGTCGT+TGG + Chr3:6681699-6681718 MsG0380011870.01.T01:intron 25.0%
!!! TGTTTTTAGTGAGTAGTTAT+AGG + Chr3:6685183-6685202 MsG0380011870.01.T01:intron 25.0%
!!! TTCTTTTGTTTGTGGATTTA+GGG + Chr3:6681195-6681214 MsG0380011870.01.T01:intron 25.0%
!!! TTTCTTTTGTTTGTGGATTT+AGG + Chr3:6681194-6681213 MsG0380011870.01.T01:intron 25.0%
AAAATGTATAAGGGAATGGA+TGG - Chr3:6684374-6684393 None:intergenic 30.0%
AAACAGATTGGAAACAGATT+GGG - Chr3:6682117-6682136 None:intergenic 30.0%
AAATCCTCAAAGTCAAATGT+TGG + Chr3:6683066-6683085 MsG0380011870.01.T01:CDS 30.0%
AAATGCTTGGGATATATCAT+AGG - Chr3:6684603-6684622 None:intergenic 30.0%
AAATTGGTTAGGGTTAAACT+TGG - Chr3:6683013-6683032 None:intergenic 30.0%
AACAAATGCAGCTAATAAAG+AGG + Chr3:6683996-6684015 MsG0380011870.01.T01:intron 30.0%
AACAGATTGGGCTAAATTAA+AGG - Chr3:6682105-6682124 None:intergenic 30.0%
AACCCATGATCACAAAAATA+AGG + Chr3:6683720-6683739 MsG0380011870.01.T01:intron 30.0%
AAGCAAATTGTCTAAATGCT+TGG - Chr3:6684616-6684635 None:intergenic 30.0%
AAGTTTAACCCTAACCAATT+TGG + Chr3:6683012-6683031 MsG0380011870.01.T01:CDS 30.0%
AATCAAATTTACCTCTTGCA+TGG - Chr3:6683356-6683375 None:intergenic 30.0%
ACACAACTATGCATCATAAT+GGG - Chr3:6682298-6682317 None:intergenic 30.0%
ACAGATGACTGATGATAATA+TGG - Chr3:6684672-6684691 None:intergenic 30.0%
ACTGACATTATTTGTTCAAG+CGG + Chr3:6685232-6685251 MsG0380011870.01.T01:intron 30.0%
AGAATAGTTCGTCATGTATT+TGG - Chr3:6684060-6684079 None:intergenic 30.0%
AGACATTTCATACTGTAAGT+AGG - Chr3:6683509-6683528 None:intergenic 30.0%
AGATTCCTAAATTCACCAAT+TGG - Chr3:6682865-6682884 None:intergenic 30.0%
AGCAAATTGTCTAAATGCTT+GGG - Chr3:6684615-6684634 None:intergenic 30.0%
AGGATGGTATATAATAGCAA+AGG + Chr3:6685458-6685477 MsG0380011870.01.T01:intron 30.0%
AGGCTAGGTAAGTTATTATT+TGG + Chr3:6682057-6682076 MsG0380011870.01.T01:intron 30.0%
CAAGGTTAGGAAAATTATGT+CGG + Chr3:6681097-6681116 MsG0380011870.01.T01:intron 30.0%
CAATTTAGTCCCTCAAATAT+AGG - Chr3:6683658-6683677 None:intergenic 30.0%
CATCAATTAATCATCCAAAC+AGG + Chr3:6684319-6684338 MsG0380011870.01.T01:intron 30.0%
CTGTTTGGATGATTAATTGA+TGG - Chr3:6684321-6684340 None:intergenic 30.0%
CTTAAATCTGAATTCATGAG+AGG - Chr3:6681418-6681437 None:intergenic 30.0%
GAAGTAGATGTTTGGAAAAT+TGG + Chr3:6680999-6681018 MsG0380011870.01.T01:CDS 30.0%
GATTAATTGATGGAACAAAG+TGG - Chr3:6684311-6684330 None:intergenic 30.0%
GGCTAAATTTAAGTCACAAA+AGG + Chr3:6683741-6683760 MsG0380011870.01.T01:intron 30.0%
GGCTAGGTAAGTTATTATTT+GGG + Chr3:6682058-6682077 MsG0380011870.01.T01:intron 30.0%
GTCTCTGTATTGAATATCAA+AGG + Chr3:6683391-6683410 MsG0380011870.01.T01:intron 30.0%
GTTGCAAATGTAGTTAATTG+CGG + Chr3:6683419-6683438 MsG0380011870.01.T01:intron 30.0%
TAAACGTGGTTTATTCAGAT+GGG + Chr3:6685017-6685036 MsG0380011870.01.T01:intron 30.0%
TATAGGCTTGATGTTTCATT+TGG + Chr3:6685200-6685219 MsG0380011870.01.T01:intron 30.0%
TCACTCTTTCTTAATGCATT+TGG - Chr3:6685910-6685929 None:intergenic 30.0%
TGCACAATATTCTACAACAA+TGG - Chr3:6684874-6684893 None:intergenic 30.0%
TTAAACGTGGTTTATTCAGA+TGG + Chr3:6685016-6685035 MsG0380011870.01.T01:intron 30.0%
TTTCTAACTTATGCGTCAAT+AGG + Chr3:6685743-6685762 MsG0380011870.01.T01:intron 30.0%
! AAGCATTTAGACAATTTGCT+TGG + Chr3:6684615-6684634 MsG0380011870.01.T01:CDS 30.0%
! ATGGTTGATCGTTTAATTTC+TGG + Chr3:6685159-6685178 MsG0380011870.01.T01:intron 30.0%
! ATTGATAAGCAATTTTGAGC+CGG - Chr3:6682009-6682028 None:intergenic 30.0%
!! AACCATTTCTAGCAAATTCA+TGG + Chr3:6684445-6684464 MsG0380011870.01.T01:intron 30.0%
!! ACATTTGACTTTGAGGATTT+TGG - Chr3:6683066-6683085 None:intergenic 30.0%
!! ATAAGGCTGATTTTGTGTTT+TGG + Chr3:6683278-6683297 MsG0380011870.01.T01:CDS 30.0%
!! ATGAGGCTAAATTTGCTATT+TGG - Chr3:6682146-6682165 None:intergenic 30.0%
!! CATTTTCTGGGAAGTATAAA+GGG + Chr3:6685832-6685851 MsG0380011870.01.T01:CDS 30.0%
!! TAAGGCTGATTTTGTGTTTT+GGG + Chr3:6683279-6683298 MsG0380011870.01.T01:CDS 30.0%
!! TCATTTTCTGGGAAGTATAA+AGG + Chr3:6685831-6685850 MsG0380011870.01.T01:CDS 30.0%
!! TGAGGCTAAATTTGCTATTT+GGG - Chr3:6682145-6682164 None:intergenic 30.0%
!! TTGTGGGAAAGTATCAAAAA+TGG + Chr3:6682193-6682212 MsG0380011870.01.T01:intron 30.0%
!!! AGCCTTATTTTTGTGATCAT+GGG - Chr3:6683725-6683744 None:intergenic 30.0%
!!! TAGCCTTATTTTTGTGATCA+TGG - Chr3:6683726-6683745 None:intergenic 30.0%
!!! TGATTTTGTGTTTTGGGATA+AGG + Chr3:6683285-6683304 MsG0380011870.01.T01:CDS 30.0%
AATACCAGCCAAATTGGTTA+GGG - Chr3:6683023-6683042 None:intergenic 35.0%
AATGCATTTGGCCAACTTAT+TGG - Chr3:6685898-6685917 None:intergenic 35.0%
AATGTTTGCAACAATTGGAC+CGG + Chr3:6681987-6682006 MsG0380011870.01.T01:CDS 35.0%
AATTGATGGAACAAAGTGGA+AGG - Chr3:6684307-6684326 None:intergenic 35.0%
AGCCAAATGTTTGCAACAAT+TGG + Chr3:6681982-6682001 MsG0380011870.01.T01:CDS 35.0%
AGTTGCTTGATATGACCTTA+TGG + Chr3:6681758-6681777 MsG0380011870.01.T01:intron 35.0%
ATCGAGTTATAGCATGAATC+CGG - Chr3:6681224-6681243 None:intergenic 35.0%
ATGGGGGATTTAATCACAAA+AGG + Chr3:6685584-6685603 MsG0380011870.01.T01:intron 35.0%
ATGTTGATGTTCCATTGACA+AGG + Chr3:6683115-6683134 MsG0380011870.01.T01:CDS 35.0%
ATTGATGGAACAAAGTGGAA+GGG - Chr3:6684306-6684325 None:intergenic 35.0%
ATTGTGCACAATAATCCAAC+TGG + Chr3:6684886-6684905 MsG0380011870.01.T01:CDS 35.0%
CACACAACTATGCATCATAA+TGG - Chr3:6682299-6682318 None:intergenic 35.0%
CATACCATACAAACGGAAAT+TGG - Chr3:6685401-6685420 None:intergenic 35.0%
CCATCTTCGATCTCTTTAAA+GGG - Chr3:6681441-6681460 None:intergenic 35.0%
CGAAGATGGAAATTTCAAAC+CGG + Chr3:6681452-6681471 MsG0380011870.01.T01:CDS 35.0%
CTACAACCTACAATCTGAAA+GGG - Chr3:6684247-6684266 None:intergenic 35.0%
CTGAATTGGATCACAATCAT+TGG - Chr3:6685868-6685887 None:intergenic 35.0%
GAAACAGATTGGAAACAGAT+TGG - Chr3:6682118-6682137 None:intergenic 35.0%
GAAACCAATTTCCGTTTGTA+TGG + Chr3:6685394-6685413 MsG0380011870.01.T01:CDS 35.0%
GATTCAGAGTTCTTGATTCA+TGG + Chr3:6681021-6681040 MsG0380011870.01.T01:CDS 35.0%
GCATGTTGATCATCCATTTA+AGG + Chr3:6681338-6681357 MsG0380011870.01.T01:CDS 35.0%
GCTATACCATACAAAACATC+CGG - Chr3:6681474-6681493 None:intergenic 35.0%
GTCCAATTGTTGCAAACATT+TGG - Chr3:6681987-6682006 None:intergenic 35.0%
GTGTTATAAAGATGGCATTG+CGG + Chr3:6682494-6682513 MsG0380011870.01.T01:intron 35.0%
GTTATCGATGGTTATGATGT+TGG - Chr3:6682529-6682548 None:intergenic 35.0%
GTTGCTTGATATGACCTTAT+GGG + Chr3:6681759-6681778 MsG0380011870.01.T01:intron 35.0%
TAATACCAGCCAAATTGGTT+AGG - Chr3:6683024-6683043 None:intergenic 35.0%
TAGGTAAACAACCTTGTCAA+TGG - Chr3:6683129-6683148 None:intergenic 35.0%
TATCATCAGTCATCTGTTCA+AGG + Chr3:6684675-6684694 MsG0380011870.01.T01:CDS 35.0%
TATTTGGGAAAGTGGTACAA+AGG + Chr3:6682073-6682092 MsG0380011870.01.T01:intron 35.0%
TCCAGTTGTTGAAAGGTTTA+AGG + Chr3:6682037-6682056 MsG0380011870.01.T01:CDS 35.0%
TCCATCTTCGATCTCTTTAA+AGG - Chr3:6681442-6681461 None:intergenic 35.0%
TCTACAACCTACAATCTGAA+AGG - Chr3:6684248-6684267 None:intergenic 35.0%
TCTCATAATACCAGCCAAAT+TGG - Chr3:6683029-6683048 None:intergenic 35.0%
TGAATTTAGGAATCTGATGC+AGG + Chr3:6682870-6682889 MsG0380011870.01.T01:CDS 35.0%
TGAGACCAATTGGTGAATTT+AGG + Chr3:6682857-6682876 MsG0380011870.01.T01:CDS 35.0%
TGGTTTATTCAGATGGGAAT+AGG + Chr3:6685023-6685042 MsG0380011870.01.T01:intron 35.0%
TGTGATCATCGTGTTATAGA+TGG - Chr3:6683856-6683875 None:intergenic 35.0%
TGTTATAAAGATGGCATTGC+GGG + Chr3:6682495-6682514 MsG0380011870.01.T01:intron 35.0%
TGTTGATCATCCATTTAAGG+TGG + Chr3:6681341-6681360 MsG0380011870.01.T01:CDS 35.0%
TTAATGACTTCCAATGCTCA+AGG - Chr3:6681254-6681273 None:intergenic 35.0%
TTAGTATTACAGTTCCCCAT+AGG + Chr3:6684397-6684416 MsG0380011870.01.T01:intron 35.0%
TTATTGGAAGATGGCTGAAT+TGG - Chr3:6685882-6685901 None:intergenic 35.0%
TTCATCTTTGAGCACAAGAT+TGG - Chr3:6681647-6681666 None:intergenic 35.0%
TTGCTGAACGAAAAGATACA+GGG + Chr3:6681812-6681831 MsG0380011870.01.T01:intron 35.0%
TTTGTTCCCTTTCAGATTGT+AGG + Chr3:6684238-6684257 MsG0380011870.01.T01:intron 35.0%
! AACGCATTTTGCATTACTGT+TGG + Chr3:6682979-6682998 MsG0380011870.01.T01:CDS 35.0%
! ACGCATTTTGCATTACTGTT+GGG + Chr3:6682980-6682999 MsG0380011870.01.T01:CDS 35.0%
! ACTCTTAAAGATGCCTTTTG+AGG - Chr3:6685536-6685555 None:intergenic 35.0%
! ATCTGTTCAAGGTTTTTCCT+CGG + Chr3:6684686-6684705 MsG0380011870.01.T01:CDS 35.0%
! ATTCAAGTTTGCTTCCTTCA+CGG - Chr3:6683893-6683912 None:intergenic 35.0%
! CGACATAATTTTCCTAACCT+TGG - Chr3:6681099-6681118 None:intergenic 35.0%
! CTGCAAAACGTTCATTTTCT+GGG + Chr3:6685820-6685839 MsG0380011870.01.T01:CDS 35.0%
! GGTATTTGATTCGAATGAGT+TGG + Chr3:6684993-6685012 MsG0380011870.01.T01:intron 35.0%
! GTGTTGACATACCATACAAA+CGG - Chr3:6685408-6685427 None:intergenic 35.0%
! TTCAAACCGGATGTTTTGTA+TGG + Chr3:6681465-6681484 MsG0380011870.01.T01:CDS 35.0%
! TTGTTGAAAGGTTTAAGGCT+AGG + Chr3:6682042-6682061 MsG0380011870.01.T01:CDS 35.0%
!! AACTATGCATCATAATGGGT+CGG - Chr3:6682294-6682313 None:intergenic 35.0%
!! ACAGCATGACTTCAAGTTTT+TGG - Chr3:6684483-6684502 None:intergenic 35.0%
!! AGTCAAATGTTGGTAGCTAT+AGG + Chr3:6683076-6683095 MsG0380011870.01.T01:CDS 35.0%
!! ATTATGTCGGATTTGTTGAG+TGG + Chr3:6681110-6681129 MsG0380011870.01.T01:intron 35.0%
!! CAGCATGACTTCAAGTTTTT+GGG - Chr3:6684482-6684501 None:intergenic 35.0%
!! TGCCATGAATTTGCTAGAAA+TGG - Chr3:6684450-6684469 None:intergenic 35.0%
AACCATCGATAACTGAATCG+AGG + Chr3:6682536-6682555 MsG0380011870.01.T01:intron 40.0%
AAGCCAAAGACCACCTTAAA+TGG - Chr3:6681354-6681373 None:intergenic 40.0%
ACCATCGATAACTGAATCGA+GGG + Chr3:6682537-6682556 MsG0380011870.01.T01:intron 40.0%
AGCTGTTCATGTAGAAGCAA+AGG + Chr3:6683948-6683967 MsG0380011870.01.T01:intron 40.0%
AGTTGCATACGATGGTGATA+AGG + Chr3:6683261-6683280 MsG0380011870.01.T01:CDS 40.0%
ATGAGGGTTCAAAAAGGGAA+TGG - Chr3:6684213-6684232 None:intergenic 40.0%
ATGCAAGAGCGAAGCTAATA+TGG - Chr3:6683532-6683551 None:intergenic 40.0%
ATGTTCCAGATCAAATTGCG+AGG + Chr3:6685790-6685809 MsG0380011870.01.T01:CDS 40.0%
ATTAACCTGCAAGCTTGCAT+TGG - Chr3:6681871-6681890 None:intergenic 40.0%
ATTTGGGCAACGAAACAGAT+TGG - Chr3:6682129-6682148 None:intergenic 40.0%
CAACCTTGAAGCAAAGATCA+TGG - Chr3:6682322-6682341 None:intergenic 40.0%
CAATGATGAGTTCCATATGC+TGG - Chr3:6681070-6681089 None:intergenic 40.0%
CAGCATATGGAACTCATCAT+TGG + Chr3:6681068-6681087 MsG0380011870.01.T01:CDS 40.0%
CAGTAATGGTAACCAGCATA+TGG + Chr3:6681055-6681074 MsG0380011870.01.T01:CDS 40.0%
CTAGACTATGCAAATCGATG+AGG - Chr3:6682163-6682182 None:intergenic 40.0%
CTTGCTGAACGAAAAGATAC+AGG + Chr3:6681811-6681830 MsG0380011870.01.T01:intron 40.0%
GAATGTTGTTGACAATGCAG+TGG + Chr3:6681733-6681752 MsG0380011870.01.T01:intron 40.0%
GCCTTAAACCTTTCAACAAC+TGG - Chr3:6682041-6682060 None:intergenic 40.0%
GGAGACTGATATACATTGCA+GGG - Chr3:6684039-6684058 None:intergenic 40.0%
GGTCACAAAGAATGTAAAGC+TGG + Chr3:6681383-6681402 MsG0380011870.01.T01:CDS 40.0%
GTATAAGGGAATGGATGGAA+TGG - Chr3:6684369-6684388 None:intergenic 40.0%
GTTAAAATGCCTGCTCTAAC+CGG - Chr3:6684424-6684443 None:intergenic 40.0%
TCAGCCATCTTCCAATAAGT+TGG + Chr3:6685884-6685903 MsG0380011870.01.T01:CDS 40.0%
TCATGAGATCGTGAAGACAT+CGG + Chr3:6681594-6681613 MsG0380011870.01.T01:CDS 40.0%
TCATGCTCAAATGATCCAGT+TGG - Chr3:6684904-6684923 None:intergenic 40.0%
TCTTAGAAAGTCCATGCAAG+AGG + Chr3:6683342-6683361 MsG0380011870.01.T01:CDS 40.0%
TCTTTGCTTCAAGGTTGCTT+AGG + Chr3:6682325-6682344 MsG0380011870.01.T01:intron 40.0%
TGGAGACTGATATACATTGC+AGG - Chr3:6684040-6684059 None:intergenic 40.0%
TTAACCCTAACCAATTTGGC+TGG + Chr3:6683016-6683035 MsG0380011870.01.T01:CDS 40.0%
TTAACCTGCAAGCTTGCATT+GGG - Chr3:6681870-6681889 None:intergenic 40.0%
TTAATCTTCCGAATGACAGC+AGG - Chr3:6684714-6684733 None:intergenic 40.0%
TTCATGTAGAAGCAAAGGCA+GGG + Chr3:6683953-6683972 MsG0380011870.01.T01:intron 40.0%
TTGAGCACAAGATTGGTACA+CGG - Chr3:6681640-6681659 None:intergenic 40.0%
TTGGCCAACTTATTGGAAGA+TGG - Chr3:6685891-6685910 None:intergenic 40.0%
TTTGAGCATGAGAAGATCAG+TGG + Chr3:6684913-6684932 MsG0380011870.01.T01:CDS 40.0%
! AAGGAGTGTGTTCGAATTCT+GGG + Chr3:6683304-6683323 MsG0380011870.01.T01:CDS 40.0%
! ATTGCAGGGAGGTACATTTA+TGG - Chr3:6684025-6684044 None:intergenic 40.0%
! CATATGCTGGTTACCATTAC+TGG - Chr3:6681057-6681076 None:intergenic 40.0%
! CATCCATTTAAGGTGGTCTT+TGG + Chr3:6681348-6681367 MsG0380011870.01.T01:CDS 40.0%
! CCCTTTAAAGAGATCGAAGA+TGG + Chr3:6681438-6681457 MsG0380011870.01.T01:CDS 40.0%
! GCTACCAACATTTGACTTTG+AGG - Chr3:6683073-6683092 None:intergenic 40.0%
! GCTGCAAAACGTTCATTTTC+TGG + Chr3:6685819-6685838 MsG0380011870.01.T01:CDS 40.0%
! GTGAAGGTTCAAGTTCTTCT+CGG + Chr3:6682797-6682816 MsG0380011870.01.T01:CDS 40.0%
! TAAGGAGTGTGTTCGAATTC+TGG + Chr3:6683303-6683322 MsG0380011870.01.T01:CDS 40.0%
! TGAAGCATCCAGTTGTTGAA+AGG + Chr3:6682030-6682049 MsG0380011870.01.T01:CDS 40.0%
! TTTAAGGTGGTCTTTGGCTT+AGG + Chr3:6681354-6681373 MsG0380011870.01.T01:CDS 40.0%
! TTTTGCAGTCTTCAAGCTCA+AGG + Chr3:6682751-6682770 MsG0380011870.01.T01:intron 40.0%
!! ACTATGCATCATAATGGGTC+GGG - Chr3:6682293-6682312 None:intergenic 40.0%
!! CAACAAGTTGATGAGGTTTG+TGG + Chr3:6684771-6684790 MsG0380011870.01.T01:intron 40.0%
!! CTCATCGATTTGCATAGTCT+AGG + Chr3:6682161-6682180 MsG0380011870.01.T01:intron 40.0%
!! TCGAATGAGTTGGTTAAACG+TGG + Chr3:6685003-6685022 MsG0380011870.01.T01:intron 40.0%
!! TTGATCTGGAACATTTTCCC+CGG - Chr3:6685784-6685803 None:intergenic 40.0%
AACACGATGATCACAGCTGA+GGG + Chr3:6683861-6683880 MsG0380011870.01.T01:intron 45.0%
AATTCTTCACCACCTGAACC+TGG + Chr3:6683910-6683929 MsG0380011870.01.T01:intron 45.0%
ACTCATCATTGGAGATGCCA+AGG + Chr3:6681079-6681098 MsG0380011870.01.T01:CDS 45.0%
AGGGAATGGATGGAATGGTA+AGG - Chr3:6684364-6684383 None:intergenic 45.0%
AGTCTAGGTTGTGAAGCTTG+TGG + Chr3:6682176-6682195 MsG0380011870.01.T01:intron 45.0%
ATTACAGTTCCCCATAGGAC+CGG + Chr3:6684402-6684421 MsG0380011870.01.T01:intron 45.0%
CAGTTGAGCTCTACCTCAAA+AGG + Chr3:6685520-6685539 MsG0380011870.01.T01:intron 45.0%
CATCCAAACAGGGAGAAGAA+GGG + Chr3:6684330-6684349 MsG0380011870.01.T01:intron 45.0%
CCAGATCAAATTGCGAGGTA+CGG + Chr3:6685795-6685814 MsG0380011870.01.T01:CDS 45.0%
CCATCGATAACTGAATCGAG+GGG + Chr3:6682538-6682557 MsG0380011870.01.T01:intron 45.0%
CTCTCTCAAGTGAGACCAAT+TGG + Chr3:6682847-6682866 MsG0380011870.01.T01:CDS 45.0%
CTTCTACATGAACAGCTGAG+AGG - Chr3:6683945-6683964 None:intergenic 45.0%
GACTGATATACATTGCAGGG+AGG - Chr3:6684036-6684055 None:intergenic 45.0%
GATGCAAAGACCTTGAGCAT+TGG + Chr3:6681241-6681260 MsG0380011870.01.T01:CDS 45.0%
GTCTAGGTTGTGAAGCTTGT+GGG + Chr3:6682177-6682196 MsG0380011870.01.T01:intron 45.0%
GTGCCATGATCTTTGCTTCA+AGG + Chr3:6682316-6682335 MsG0380011870.01.T01:intron 45.0%
GTTCATGTAGAAGCAAAGGC+AGG + Chr3:6683952-6683971 MsG0380011870.01.T01:intron 45.0%
GTTGTGCAAGTTGCATACGA+TGG + Chr3:6683253-6683272 MsG0380011870.01.T01:CDS 45.0%
TAACACGATGATCACAGCTG+AGG + Chr3:6683860-6683879 MsG0380011870.01.T01:intron 45.0%
TACATGAACAGCTGAGAGGA+GGG - Chr3:6683941-6683960 None:intergenic 45.0%
TATCCCTTCTTCTCCCTGTT+TGG - Chr3:6684336-6684355 None:intergenic 45.0%
TCAACTTTCACAGACACAGC+TGG - Chr3:6685347-6685366 None:intergenic 45.0%
TCATCCAAACAGGGAGAAGA+AGG + Chr3:6684329-6684348 MsG0380011870.01.T01:intron 45.0%
TCATTGGAGATGCCAAGGTT+AGG + Chr3:6681084-6681103 MsG0380011870.01.T01:intron 45.0%
TGGATTGTCACTGCCAGTAA+TGG + Chr3:6681041-6681060 MsG0380011870.01.T01:CDS 45.0%
TTCACACAGAGTACGACCAA+GGG - Chr3:6682782-6682801 None:intergenic 45.0%
! AAGACATCGGTGTTTGGATC+TGG + Chr3:6681607-6681626 MsG0380011870.01.T01:CDS 45.0%
! AGACATCGGTGTTTGGATCT+GGG + Chr3:6681608-6681627 MsG0380011870.01.T01:CDS 45.0%
! ATCGTGAAGACATCGGTGTT+TGG + Chr3:6681601-6681620 MsG0380011870.01.T01:CDS 45.0%
! GGTCTTTGGCTTAGGTACAA+AGG + Chr3:6681362-6681381 MsG0380011870.01.T01:CDS 45.0%
! GTTTGTGGATTTAGGGTGAC+CGG + Chr3:6681202-6681221 MsG0380011870.01.T01:intron 45.0%
!! AGATGCGCAACAAGTTGATG+AGG + Chr3:6684764-6684783 MsG0380011870.01.T01:CDS 45.0%
!! CAATTTGCTTGGCCTTGAGT+TGG + Chr3:6684626-6684645 MsG0380011870.01.T01:CDS 45.0%
!! CTATGCATCATAATGGGTCG+GGG - Chr3:6682292-6682311 None:intergenic 45.0%
!!! CTTTTGAGGTAGAGCTCAAC+TGG - Chr3:6685522-6685541 None:intergenic 45.0%
!!! TTTTTTTTTTAGAAATTATT+GGG + Chr3:6681566-6681585 MsG0380011870.01.T01:intron 5.0%
!!! TTTTTTTTTTTAGAAATTAT+TGG + Chr3:6681565-6681584 MsG0380011870.01.T01:intron 5.0%
AAGCAGCACCTTCATCCTGA+TGG + Chr3:6684732-6684751 MsG0380011870.01.T01:CDS 50.0%
ACTGCATCCCATCAGGATGA+AGG - Chr3:6684743-6684762 None:intergenic 50.0%
AGATGGCATTGCGGGAAAGA+AGG + Chr3:6682503-6682522 MsG0380011870.01.T01:intron 50.0%
AGCAGCACCTTCATCCTGAT+GGG + Chr3:6684733-6684752 MsG0380011870.01.T01:CDS 50.0%
ATGATCACAGCTGAGGGTCA+CGG + Chr3:6683867-6683886 MsG0380011870.01.T01:intron 50.0%
CCCCTCGATTCAGTTATCGA+TGG - Chr3:6682541-6682560 None:intergenic 50.0%
CCGTACCTCGCAATTTGATC+TGG - Chr3:6685798-6685817 None:intergenic 50.0%
CTACATGAACAGCTGAGAGG+AGG - Chr3:6683942-6683961 None:intergenic 50.0%
CTATAGGTGCTCATGTGGAG+AGG + Chr3:6683092-6683111 MsG0380011870.01.T01:CDS 50.0%
CTTCACACAGAGTACGACCA+AGG - Chr3:6682783-6682802 None:intergenic 50.0%
CTTGGTCGTACTCTGTGTGA+AGG + Chr3:6682781-6682800 MsG0380011870.01.T01:CDS 50.0%
GCTCTTGCATGCATGTGAGT+TGG + Chr3:6683542-6683561 MsG0380011870.01.T01:intron 50.0%
GGTAGCTATAGGTGCTCATG+TGG + Chr3:6683087-6683106 MsG0380011870.01.T01:CDS 50.0%
GTCTGTGAAAGTTGAGCAGC+TGG + Chr3:6685352-6685371 MsG0380011870.01.T01:CDS 50.0%
TAGGATTCTGTCCCTGTGTC+CGG + Chr3:6685762-6685781 MsG0380011870.01.T01:intron 50.0%
TGTTCAAGCGGCAGTACGTT+AGG + Chr3:6685244-6685263 MsG0380011870.01.T01:intron 50.0%
! GAACATTTTCCCCGGACACA+GGG - Chr3:6685776-6685795 None:intergenic 50.0%
!! CATAATGGGTCGGGGATCAA+CGG - Chr3:6682284-6682303 None:intergenic 50.0%
AGGATTCTGTCCCTGTGTCC+GGG + Chr3:6685763-6685782 MsG0380011870.01.T01:intron 55.0%
CAAGCTCAAGGTCATGCCCT+TGG + Chr3:6682763-6682782 MsG0380011870.01.T01:CDS 55.0%
CATGCCCAATGCAAGCTTGC+AGG + Chr3:6681863-6681882 MsG0380011870.01.T01:intron 55.0%
CCTCGGATCCTGCTGTCATT+CGG + Chr3:6684703-6684722 MsG0380011870.01.T01:CDS 55.0%
CCTGCTCTAACCGGTCCTAT+GGG - Chr3:6684415-6684434 None:intergenic 55.0%
CTGCTCTAACCGGTCCTATG+GGG - Chr3:6684414-6684433 None:intergenic 55.0%
GCATCTGACTGCATCCCATC+AGG - Chr3:6684750-6684769 None:intergenic 55.0%
TCACACGCAACGCCAACTCA+AGG - Chr3:6684641-6684660 None:intergenic 55.0%
! GGAACATTTTCCCCGGACAC+AGG - Chr3:6685777-6685796 None:intergenic 55.0%
AGGAGGGTCGTTCCAGGTTC+AGG - Chr3:6683925-6683944 None:intergenic 60.0%
AGGGTCGTTCCAGGTTCAGG+TGG - Chr3:6683922-6683941 None:intergenic 60.0%
CCCATAGGACCGGTTAGAGC+AGG + Chr3:6684412-6684431 MsG0380011870.01.T01:intron 60.0%
CCGAATGACAGCAGGATCCG+AGG - Chr3:6684706-6684725 None:intergenic 60.0%
GCCTGCTCTAACCGGTCCTA+TGG - Chr3:6684416-6684435 None:intergenic 60.0%
GGATTCTGTCCCTGTGTCCG+GGG + Chr3:6685764-6685783 MsG0380011870.01.T01:intron 60.0%
GGGTCGGGGATCAACGGATA+CGG - Chr3:6682278-6682297 None:intergenic 60.0%
GCTGAGAGGAGGGTCGTTCC+AGG - Chr3:6683931-6683950 None:intergenic 65.0%
GCTGAGGGTCACGGCCGTGA+AGG + Chr3:6683876-6683895 MsG0380011870.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 6680960 6685929 6680960 ID=MsG0380011870.01;Name=MsG0380011870.01
Chr3 mRNA 6680960 6685929 6680960 ID=MsG0380011870.01.T01;Parent=MsG0380011870.01;Name=MsG0380011870.01.T01;_AED=0.41;_eAED=0.57;_QI=0|0|0|1|0.9|0.72|11|0|548
Chr3 exon 6680960 6681100 6680960 ID=MsG0380011870.01.T01:exon:10818;Parent=MsG0380011870.01.T01
Chr3 exon 6681216 6681486 6681216 ID=MsG0380011870.01.T01:exon:10819;Parent=MsG0380011870.01.T01
Chr3 exon 6681578 6681668 6681578 ID=MsG0380011870.01.T01:exon:10820;Parent=MsG0380011870.01.T01
Chr3 exon 6681878 6682063 6681878 ID=MsG0380011870.01.T01:exon:10821;Parent=MsG0380011870.01.T01
Chr3 exon 6682759 6682891 6682759 ID=MsG0380011870.01.T01:exon:10822;Parent=MsG0380011870.01.T01
Chr3 exon 6682979 6683136 6682979 ID=MsG0380011870.01.T01:exon:10823;Parent=MsG0380011870.01.T01
Chr3 exon 6683243 6683363 6683243 ID=MsG0380011870.01.T01:exon:10824;Parent=MsG0380011870.01.T01
Chr3 exon 6684585 6684785 6684585 ID=MsG0380011870.01.T01:exon:10825;Parent=MsG0380011870.01.T01
Chr3 exon 6684883 6684972 6684883 ID=MsG0380011870.01.T01:exon:10826;Parent=MsG0380011870.01.T01
Chr3 exon 6685326 6685415 6685326 ID=MsG0380011870.01.T01:exon:10827;Parent=MsG0380011870.01.T01
Chr3 exon 6685765 6685929 6685765 ID=MsG0380011870.01.T01:exon:10828;Parent=MsG0380011870.01.T01
Chr3 CDS 6680960 6681100 6680960 ID=MsG0380011870.01.T01:cds;Parent=MsG0380011870.01.T01
Chr3 CDS 6681216 6681486 6681216 ID=MsG0380011870.01.T01:cds;Parent=MsG0380011870.01.T01
Chr3 CDS 6681578 6681668 6681578 ID=MsG0380011870.01.T01:cds;Parent=MsG0380011870.01.T01
Chr3 CDS 6681878 6682063 6681878 ID=MsG0380011870.01.T01:cds;Parent=MsG0380011870.01.T01
Chr3 CDS 6682759 6682891 6682759 ID=MsG0380011870.01.T01:cds;Parent=MsG0380011870.01.T01
Chr3 CDS 6682979 6683136 6682979 ID=MsG0380011870.01.T01:cds;Parent=MsG0380011870.01.T01
Chr3 CDS 6683243 6683363 6683243 ID=MsG0380011870.01.T01:cds;Parent=MsG0380011870.01.T01
Chr3 CDS 6684585 6684785 6684585 ID=MsG0380011870.01.T01:cds;Parent=MsG0380011870.01.T01
Chr3 CDS 6684883 6684972 6684883 ID=MsG0380011870.01.T01:cds;Parent=MsG0380011870.01.T01
Chr3 CDS 6685326 6685415 6685326 ID=MsG0380011870.01.T01:cds;Parent=MsG0380011870.01.T01
Chr3 CDS 6685765 6685929 6685765 ID=MsG0380011870.01.T01:cds;Parent=MsG0380011870.01.T01
Gene Sequence

>MsG0380011870.01.T01

ATGTCTAGGGATTTTGATTGCTTCAAAGACTTGAAAAAAGAAGTAGATGTTTGGAAAATTGGATTCAGAGTTCTTGATTCATGGATTGTCACTGCCAGTAATGGTAACCAGCATATGGAACTCATCATTGGAGATGCCAAGGGTGACCGGATTCATGCTATAACTCGATGCAAAGACCTTGAGCATTGGAAGTCATTAATTGAAGATAACAAAACTTATGTTTTGCATAATTGTCTTGTGTTCAATAATGATGCTGTGTTCAAGCATGTTGATCATCCATTTAAGGTGGTCTTTGGCTTAGGTACAAAGGTCACAAAGAATGTAAAGCTGGCTGACATTCCCTCTCATGAATTCAGATTTAAGCCCTTTAAAGAGATCGAAGATGGAAATTTCAAACCGGATGTTTTGTATGAAATTATTGGGCTTATTCATGAGATCGTGAAGACATCGGTGTTTGGATCTGGGAAAAAGCCGTGTACCAATCTTGTGCTCAAAGATGAAGCCTTGCAGGTTAATATTTTCTGTATATATTATTTTGTTAATTCGTTTCATTGTTTTTGGTTTTGTTTATGTTTGTTTTTTTGTTCTTATTTTTCAGATAACGGGAAGCCAAATGTTTGCAACAATTGGACCGGCTCAAAATTGCTTATCAATTTGAAGCATCCAGTTGTTGAAAGGTTTAAGGCTAGTCTTCAAGCTCAAGGTCATGCCCTTGGTCGTACTCTGTGTGAAGGTTCAAGTTCTTCTCGGAGATCGCAAAATGATGAATTTTCGGATCTCTCTCAAGTGAGACCAATTGGTGAATTTAGGAATCTGATGCAGAACGCATTTTGCATTACTGTTGGGACAACAACCAAGTTTAACCCTAACCAATTTGGCTGGTATTATGAGAGTTGCACTAAATGTCCAAAATCCTCAAAGTCAAATGTTGGTAGCTATAGGTGCTCATGTGGAGAGGATGTTGATGTTCCATTGACAAGATATAAGGTGGTTGTGCAAGTTGCATACGATGGTGATAAGGCTGATTTTGTGTTTTGGGATAAGGAGTGTGTTCGAATTCTGGGTGTTACTGCAGATGCTCTTAGAAAGTCCATGCAAGAGGTTGATGAAGATGATCCTATGATATATCCCAAGCATTTAGACAATTTGCTTGGCCTTGAGTTGGCGTTGCGTGTGAAATATCAGCCATATTATCATCAGTCATCTGTTCAAGGTTTTTCCTCGGATCCTGCTGTCATTCGGAAGATTAAGCAGCACCTTCATCCTGATGGGATGCAGTCAGATGCGCAACAAGTTGATGAGAATATTGTGCACAATAATCCAACTGGATCATTTGAGCATGAGAAGATCAGTGGTACTGCTGAATGTTCGAAAACAGCTTCAATTCCTGTGAACACTGTCTGCGATAATCCAGCTGTGTCTGTGAAAGTTGAGCAGCTGGCTTCTTCTGCTGAATGCTTGAAACCAATTTCCGTTTGTATGGATTCTGTCCCTGTGTCCGGGGAAAATGTTCCAGATCAAATTGCGAGGTACGGTGCTGCAAAACGTTCATTTTCTGGGAAGTATAAAGGGACTGTTGCATCCAATGATTGTGATCCAATTCAGCCATCTTCCAATAAGTTGGCCAAATGCATTAAGAAAGAGTGA
Protein sequence

>MsG0380011870.01.T01

MSRDFDCFKDLKKEVDVWKIGFRVLDSWIVTASNGNQHMELIIGDAKGDRIHAITRCKDLEHWKSLIEDNKTYVLHNCLVFNNDAVFKHVDHPFKVVFGLGTKVTKNVKLADIPSHEFRFKPFKEIEDGNFKPDVLYEIIGLIHEIVKTSVFGSGKKPCTNLVLKDEALQVNIFCIYYFVNSFHCFWFCLCLFFCSYFSDNGKPNVCNNWTGSKLLINLKHPVVERFKASLQAQGHALGRTLCEGSSSSRRSQNDEFSDLSQVRPIGEFRNLMQNAFCITVGTTTKFNPNQFGWYYESCTKCPKSSKSNVGSYRCSCGEDVDVPLTRYKVVVQVAYDGDKADFVFWDKECVRILGVTADALRKSMQEVDEDDPMIYPKHLDNLLGLELALRVKYQPYYHQSSVQGFSSDPAVIRKIKQHLHPDGMQSDAQQVDENIVHNNPTGSFEHEKISGTAECSKTASIPVNTVCDNPAVSVKVEQLASSAECLKPISVCMDSVPVSGENVPDQIARYGAAKRSFSGKYKGTVASNDCDPIQPSSNKLAKCIKKE*