AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004293.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004293.01.T02 MTR_1g076580 94.382 89 2 1 1 86 1 89 1.39e-57 171
MsG0180004293.01.T02 MTR_1g076580 92.593 81 3 1 1 78 1 81 6.29e-50 152
MsG0180004293.01.T02 MTR_1g076640 81.250 80 12 2 1 77 1 80 1.23e-31 105
MsG0180004293.01.T02 MTR_1g076640 81.250 80 12 2 1 77 1 80 1.91e-30 103
MsG0180004293.01.T02 MTR_1g076640 84.848 66 7 2 1 63 1 66 3.01e-23 84.3
MsG0180004293.01.T02 MTR_1g071100 56.452 62 27 0 16 77 20 81 8.02e-21 79.7
MsG0180004293.01.T02 MTR_1g076640 59.375 64 23 2 1 61 1 64 2.69e-15 64.3
MsG0180004293.01.T02 MTR_1g010050 41.270 63 37 0 16 78 35 97 2.94e-13 60.8
MsG0180004293.01.T02 MTR_1g010050 41.270 63 37 0 16 78 35 97 3.07e-13 60.1
MsG0180004293.01.T03 MTR_1g076580 93.827 81 2 1 1 78 1 81 2.52e-50 152
MsG0180004293.01.T03 MTR_1g076580 92.593 81 3 1 1 78 1 81 7.95e-50 151
MsG0180004293.01.T03 MTR_1g076640 81.250 80 12 2 1 77 1 80 1.31e-31 105
MsG0180004293.01.T03 MTR_1g076640 81.250 80 12 2 1 77 1 80 1.09e-30 103
MsG0180004293.01.T03 MTR_1g076640 84.848 66 7 2 1 63 1 66 2.32e-23 84.3
MsG0180004293.01.T03 MTR_1g071100 56.452 62 27 0 16 77 20 81 5.89e-21 79.7
MsG0180004293.01.T03 MTR_1g076640 59.375 64 23 2 1 61 1 64 7.54e-16 65.5
MsG0180004293.01.T03 MTR_1g010050 41.270 63 37 0 16 78 35 97 2.17e-13 60.1
MsG0180004293.01.T03 MTR_1g010050 41.270 63 37 0 16 78 35 97 3.20e-13 60.1
MsG0180004293.01.T01 MTR_1g076580 93.827 81 2 1 1 78 1 81 1.05e-49 152
MsG0180004293.01.T01 MTR_1g076580 92.593 81 3 1 1 78 1 81 1.40e-48 150
MsG0180004293.01.T01 MTR_1g076640 79.817 109 18 3 1 106 1 108 2.15e-48 150
MsG0180004293.01.T01 MTR_1g071100 53.846 104 47 1 3 106 7 109 9.22e-37 120
MsG0180004293.01.T01 MTR_1g076640 81.250 80 12 2 1 77 1 80 5.71e-31 105
MsG0180004293.01.T01 MTR_1g076640 84.848 66 7 2 1 63 1 66 7.25e-23 84.3
MsG0180004293.01.T01 MTR_1g010050 40.217 92 52 2 16 105 35 125 6.28e-18 73.6
MsG0180004293.01.T01 MTR_1g076640 80.000 45 6 2 1 42 1 45 1.11e-14 63.5
MsG0180004293.01.T01 MTR_1g010050 41.935 62 36 0 16 77 35 96 2.40e-12 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004293.01.T02 AT3G22942 78.182 55 12 0 23 77 18 72 1.87e-19 75.9
MsG0180004293.01.T02 AT3G63420 50.746 67 33 0 12 78 5 71 1.75e-17 70.9
MsG0180004293.01.T02 AT3G63420 50.746 67 33 0 12 78 5 71 1.75e-17 70.9
MsG0180004293.01.T02 AT3G63420 50.746 67 33 0 12 78 45 111 1.37e-16 69.7
MsG0180004293.01.T03 AT3G22942 78.182 55 12 0 23 77 18 72 1.12e-19 76.3
MsG0180004293.01.T03 AT3G63420 52.239 67 32 0 12 78 5 71 5.71e-18 71.6
MsG0180004293.01.T03 AT3G63420 52.239 67 32 0 12 78 5 71 5.71e-18 71.6
MsG0180004293.01.T03 AT3G63420 52.239 67 32 0 12 78 45 111 4.36e-17 70.5
MsG0180004293.01.T01 AT3G63420 56.842 95 40 1 12 106 5 98 2.45e-32 109
MsG0180004293.01.T01 AT3G63420 56.842 95 40 1 12 106 5 98 2.45e-32 109
MsG0180004293.01.T01 AT3G22942 70.238 84 24 1 23 106 18 100 7.20e-32 108
MsG0180004293.01.T01 AT3G63420 56.842 95 40 1 12 106 45 138 1.23e-31 108

Find 16 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATCCCATATAGGATTTA+AGG 0.165452 1:-76182695 None:intergenic
TGCAGCAGCCTTTGGAATCT+TGG 0.250553 1:-76182732 None:intergenic
GCAGCAGCCTTTGGAATCTT+GGG 0.298135 1:-76182731 None:intergenic
TTGGTCCCTTAAATCCTATA+TGG 0.329222 1:+76182689 MsG0180004293.01.T01:CDS
TAAATCCTATATGGGATAGA+TGG 0.350762 1:+76182698 MsG0180004293.01.T01:CDS
CCAACATCTGCAGCAGCCTT+TGG 0.388678 1:-76182740 None:intergenic
CTATCCCATATAGGATTTAA+GGG 0.439135 1:-76182694 None:intergenic
TTCTGCTTTGACAGAACAGT+TGG 0.445567 1:+76182670 MsG0180004293.01.T01:intron
TCAAACCATCTATCCCATAT+AGG 0.457946 1:-76182703 None:intergenic
TACAATGGAAGTAATGGGTC+AGG 0.462616 1:-76182556 None:intergenic
CCAAAGGCTGCTGCAGATGT+TGG 0.474766 1:+76182740 MsG0180004293.01.T01:CDS
TGGTCCCTTAAATCCTATAT+GGG 0.499485 1:+76182690 MsG0180004293.01.T01:CDS
TGCTTGGCAATGTCGAGAAA+AGG 0.501990 1:+76182533 MsG0180004293.01.T01:CDS
ATATGGGATAGATGGTTTGA+AGG 0.520251 1:+76182706 MsG0180004293.01.T01:CDS
CAGCAGCCTTTGGAATCTTG+GGG 0.533463 1:-76182730 None:intergenic
GAAGGACCCCAAGATTCCAA+AGG 0.632878 1:+76182724 MsG0180004293.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAGAACTTTTTTTTTT+GGG + Chr1:76181156-76181175 MsG0180004293.01.T01:intron 10.0%
!!! AAAAAGTTCTTTTTTAATAA+TGG - Chr1:76181151-76181170 None:intergenic 10.0%
!!! TAAAAAAGAACTTTTTTTTT+TGG + Chr1:76181155-76181174 MsG0180004293.01.T01:intron 10.0%
!! TTACAAAAGTAATTTATCAA+AGG - Chr1:76182632-76182651 None:intergenic 15.0%
!!! AAAAAGAACTTTTTTTTTTG+GGG + Chr1:76181157-76181176 MsG0180004293.01.T01:intron 15.0%
!!! TCAATTAAAGCTAAATTTTA+AGG - Chr1:76180577-76180596 None:intergenic 15.0%
!!! TGAATTTTTTGTTTTTAGTT+TGG + Chr1:76180622-76180641 MsG0180004293.01.T01:intron 15.0%
!! AAAATAATCCTAACTAGTTA+AGG - Chr1:76182167-76182186 None:intergenic 20.0%
!! ATTCACTATAAATTCAATGT+AGG + Chr1:76182367-76182386 MsG0180004293.01.T01:intron 20.0%
!!! TAAAATTTTGTTGTGTTTGT+TGG - Chr1:76181715-76181734 None:intergenic 20.0%
!!! TCAACTTTTGATAGTTAAAA+GGG + Chr1:76180753-76180772 MsG0180004293.01.T01:intron 20.0%
!!! TTAGCTTTAATTGATTTCTT+GGG + Chr1:76180583-76180602 MsG0180004293.01.T01:intron 20.0%
!!! TTGAATTTTTAGTGACTATA+TGG + Chr1:76180870-76180889 MsG0180004293.01.T01:intron 20.0%
!!! TTTAGCTTTAATTGATTTCT+TGG + Chr1:76180582-76180601 MsG0180004293.01.T01:intron 20.0%
! AAATTACGAATTAATCAAGG+AGG - Chr1:76182041-76182060 None:intergenic 25.0%
! ACTGAAAAGTAATGACAATT+TGG + Chr1:76180660-76180679 MsG0180004293.01.T01:intron 25.0%
! AGAAAGAAAGACGAAAATTA+AGG - Chr1:76181374-76181393 None:intergenic 25.0%
! ATCAATTTGATCAGACATTA+TGG - Chr1:76182469-76182488 None:intergenic 25.0%
! ATTAAGTTTGAATTTCTGTC+TGG + Chr1:76182493-76182512 MsG0180004293.01.T01:intron 25.0%
! CTGAAAAGTAATGACAATTT+GGG + Chr1:76180661-76180680 MsG0180004293.01.T01:intron 25.0%
! CTTGATCTTATTAAGATTCA+GGG + Chr1:76181740-76181759 MsG0180004293.01.T01:intron 25.0%
! TATGAGTAGAACAATATTCA+AGG - Chr1:76180838-76180857 None:intergenic 25.0%
! TGAAAAGTAATGACAATTTG+GGG + Chr1:76180662-76180681 MsG0180004293.01.T01:intron 25.0%
! TTTGTAATAACAGCAACATA+AGG + Chr1:76181304-76181323 MsG0180004293.01.T01:intron 25.0%
!! AGATTTTACAATGGAAGTAA+TGG - Chr1:76182565-76182584 None:intergenic 25.0%
!! ATCATCTTTTCTGTAAAAAG+TGG - Chr1:76182281-76182300 None:intergenic 25.0%
!! GATTTTACAATGGAAGTAAT+GGG - Chr1:76182564-76182583 None:intergenic 25.0%
!! TTTTACAGAAAAGATGATTG+TGG + Chr1:76182283-76182302 MsG0180004293.01.T01:intron 25.0%
!!! GTCAACTTTTGATAGTTAAA+AGG + Chr1:76180752-76180771 MsG0180004293.01.T01:intron 25.0%
!!! TCATTCTTTCTGAGATATAT+AGG + Chr1:76182234-76182253 MsG0180004293.01.T01:intron 25.0%
AAGAACAAAACTCCAAAACA+TGG - Chr1:76180481-76180500 None:intergenic 30.0%
ACGAAAATTAAGGCGAAAAA+TGG - Chr1:76181364-76181383 None:intergenic 30.0%
ATAAGCCAGTTACCTAAAAT+TGG - Chr1:76182097-76182116 None:intergenic 30.0%
ATGTGCCATCAAACAAAAAA+TGG + Chr1:76181557-76181576 MsG0180004293.01.T01:intron 30.0%
CTATCCCATATAGGATTTAA+GGG - Chr1:76182697-76182716 None:intergenic 30.0%
CTTGTGTAGAAAATATGGTA+AGG - Chr1:76181657-76181676 None:intergenic 30.0%
GCTTGATCTTATTAAGATTC+AGG + Chr1:76181739-76181758 MsG0180004293.01.T01:intron 30.0%
GGATAGACATTTATCAGTAA+TGG - Chr1:76181789-76181808 None:intergenic 30.0%
GGCAAATTACGAATTAATCA+AGG - Chr1:76182044-76182063 None:intergenic 30.0%
TAAATCCTATATGGGATAGA+TGG + Chr1:76182698-76182717 MsG0180004293.01.T01:CDS 30.0%
TAGCATTAAACACTAGAAGT+TGG - Chr1:76182594-76182613 None:intergenic 30.0%
TATCAAGTCCTTAACTAGTT+AGG + Chr1:76182156-76182175 MsG0180004293.01.T01:intron 30.0%
TCTATCCCATATAGGATTTA+AGG - Chr1:76182698-76182717 None:intergenic 30.0%
TGTGCCATCAAACAAAAAAT+GGG + Chr1:76181558-76181577 MsG0180004293.01.T01:intron 30.0%
! ATGTCTGAAGTTGATTGATA+AGG + Chr1:76182068-76182087 MsG0180004293.01.T01:intron 30.0%
! TACCATATTTTCTACACAAG+AGG + Chr1:76181657-76181676 MsG0180004293.01.T01:intron 30.0%
! TCTTCATCTTTACCATGTTT+TGG + Chr1:76180466-76180485 MsG0180004293.01.T01:intron 30.0%
! TCTTTTCTGTAAAAAGTGGT+TGG - Chr1:76182277-76182296 None:intergenic 30.0%
! TGGCATAAGAGATTTTACAA+TGG - Chr1:76182574-76182593 None:intergenic 30.0%
! TTCCATGTACTTCAAGTTTA+AGG + Chr1:76180730-76180749 MsG0180004293.01.T01:intron 30.0%
!! ATATATAGGTTGTTTTCCAG+CGG + Chr1:76182248-76182267 MsG0180004293.01.T01:intron 30.0%
!! ATTCGTCTTGTTCTAACTTT+TGG - Chr1:76180982-76181001 None:intergenic 30.0%
!!! AGTCTTTTTCAGATACAAGA+GGG + Chr1:76180363-76180382 MsG0180004293.01.T01:CDS 30.0%
AAATTCAATGTAGGAAGAGC+TGG + Chr1:76182376-76182395 MsG0180004293.01.T01:intron 35.0%
AACCTTAAATATTCCAACGC+AGG - Chr1:76181847-76181866 None:intergenic 35.0%
AACTTGAAGTACATGGAAGA+TGG - Chr1:76180728-76180747 None:intergenic 35.0%
ACAAAGTCTCTCATAGCAAT+GGG - Chr1:76181196-76181215 None:intergenic 35.0%
AGCACATGTTTGTATGCAAT+TGG + Chr1:76181534-76181553 MsG0180004293.01.T01:intron 35.0%
AGCCTCTTGTGTAGAAAATA+TGG - Chr1:76181662-76181681 None:intergenic 35.0%
AGGAGGGAACTGAAAAATTA+TGG - Chr1:76182021-76182040 None:intergenic 35.0%
ATATGGGATAGATGGTTTGA+AGG + Chr1:76182706-76182725 MsG0180004293.01.T01:CDS 35.0%
ATTATGTGTTGTGATAGGAG+AGG + Chr1:76180686-76180705 MsG0180004293.01.T01:intron 35.0%
ATTTCTTGGGATACTCTTCT+GGG + Chr1:76180596-76180615 MsG0180004293.01.T01:intron 35.0%
CAGATAATTAGTGCTCATGA+TGG - Chr1:76182194-76182213 None:intergenic 35.0%
CCTCAAATTGTTCAAAAGTC+AGG - Chr1:76181440-76181459 None:intergenic 35.0%
GACAAAACATTTGCAACATG+AGG - Chr1:76180816-76180835 None:intergenic 35.0%
GACCTTAAACTTGAAGTACA+TGG - Chr1:76180735-76180754 None:intergenic 35.0%
GCAGAACAAGAACTCAAAAA+AGG - Chr1:76181898-76181917 None:intergenic 35.0%
GGATACATGCTGAACTTAAA+CGG + Chr1:76180393-76180412 MsG0180004293.01.T01:CDS 35.0%
GGGTCTTGATAAATTAGTGT+TGG + Chr1:76181760-76181779 MsG0180004293.01.T01:intron 35.0%
GTAGTTGCGTTATGCTTATT+TGG + Chr1:76181480-76181499 MsG0180004293.01.T01:intron 35.0%
GTGTTAAAGTCAATTGCACA+GGG - Chr1:76181970-76181989 None:intergenic 35.0%
TACCTGCGTTGGAATATTTA+AGG + Chr1:76181842-76181861 MsG0180004293.01.T01:intron 35.0%
TACGAATTAATCAAGGAGGA+GGG - Chr1:76182037-76182056 None:intergenic 35.0%
TATTTGCATACTGTGTCCAT+TGG - Chr1:76181992-76182011 None:intergenic 35.0%
TCAAACCATCTATCCCATAT+AGG - Chr1:76182706-76182725 None:intergenic 35.0%
TCATGAGCACTAATTATCTG+TGG + Chr1:76182194-76182213 MsG0180004293.01.T01:intron 35.0%
TCTAGATGACATGTTCTGTT+TGG - Chr1:76181810-76181829 None:intergenic 35.0%
TGGTCCCTTAAATCCTATAT+GGG + Chr1:76182690-76182709 MsG0180004293.01.T01:CDS 35.0%
TGTTAAAGTCAATTGCACAG+GGG - Chr1:76181969-76181988 None:intergenic 35.0%
TTACGAATTAATCAAGGAGG+AGG - Chr1:76182038-76182057 None:intergenic 35.0%
TTGGTCCCTTAAATCCTATA+TGG + Chr1:76182689-76182708 MsG0180004293.01.T01:CDS 35.0%
TTTCTGTAAAAAGTGGTTGG+AGG - Chr1:76182274-76182293 None:intergenic 35.0%
! AGAAACAAGGTACTTAGAGT+TGG + Chr1:76180424-76180443 MsG0180004293.01.T01:intron 35.0%
! AGGGTCTTATGAAAGATTCA+GGG + Chr1:76181688-76181707 MsG0180004293.01.T01:intron 35.0%
! CAAGAACTCAAAAAAGGTGT+TGG - Chr1:76181892-76181911 None:intergenic 35.0%
! CCTGACTTTTGAACAATTTG+AGG + Chr1:76181437-76181456 MsG0180004293.01.T01:intron 35.0%
! GCAATTGACTTTAACACCAA+TGG + Chr1:76181973-76181992 MsG0180004293.01.T01:intron 35.0%
! TCTGAAGTTGATTGATAAGG+TGG + Chr1:76182071-76182090 MsG0180004293.01.T01:intron 35.0%
! TTGATAAGGTGGCCAATTTT+AGG + Chr1:76182082-76182101 MsG0180004293.01.T01:intron 35.0%
!! ATAGGAGAGGTACTTGTAAT+GGG + Chr1:76180699-76180718 MsG0180004293.01.T01:intron 35.0%
!!! CAGTCTTTTTCAGATACAAG+AGG + Chr1:76180362-76180381 MsG0180004293.01.T01:CDS 35.0%
!!! TTTTGAGTTCTTGTTCTGCT+CGG + Chr1:76181899-76181918 MsG0180004293.01.T01:intron 35.0%
!!! TTTTTTTTTTGGGGTAGCCA+GGG + Chr1:76181166-76181185 MsG0180004293.01.T01:intron 35.0%
AACGGTTGGAACAAGAAACA+AGG + Chr1:76180411-76180430 MsG0180004293.01.T01:CDS 40.0%
AAGACTGAGACTGAACAAAG+TGG - Chr1:76180349-76180368 None:intergenic 40.0%
ACATGCTGAACTTAAACGGT+TGG + Chr1:76180397-76180416 MsG0180004293.01.T01:CDS 40.0%
AGACTGAGACTGAACAAAGT+GGG - Chr1:76180348-76180367 None:intergenic 40.0%
CAAAGTCTCTCATAGCAATG+GGG - Chr1:76181195-76181214 None:intergenic 40.0%
CAATCAACTTCAGACATTGC+TGG - Chr1:76182065-76182084 None:intergenic 40.0%
CAGATACAAGAGGGAAACAT+AGG + Chr1:76180372-76180391 MsG0180004293.01.T01:CDS 40.0%
CTGAATCTTTCATAAGACCC+TGG - Chr1:76181689-76181708 None:intergenic 40.0%
GACAAAGTCTCTCATAGCAA+TGG - Chr1:76181197-76181216 None:intergenic 40.0%
GAGACTTGATGTTTGACGTT+TGG + Chr1:76181404-76181423 MsG0180004293.01.T01:intron 40.0%
GATTTCTTGGGATACTCTTC+TGG + Chr1:76180595-76180614 MsG0180004293.01.T01:intron 40.0%
GGGGAATTATGTGTTGTGAT+AGG + Chr1:76180681-76180700 MsG0180004293.01.T01:intron 40.0%
GGGGATTTGAGAAACATCAA+TGG - Chr1:76181950-76181969 None:intergenic 40.0%
GGTGTTAAAGTCAATTGCAC+AGG - Chr1:76181971-76181990 None:intergenic 40.0%
GGTTGCGTACAAAAGACAAA+TGG - Chr1:76181636-76181655 None:intergenic 40.0%
TGAGCACTAATTATCTGTGG+AGG + Chr1:76182197-76182216 MsG0180004293.01.T01:intron 40.0%
TTCTGCTTTGACAGAACAGT+TGG + Chr1:76182670-76182689 MsG0180004293.01.T01:intron 40.0%
TTCTTGTTCTGCTCGGTTAA+GGG + Chr1:76181906-76181925 MsG0180004293.01.T01:intron 40.0%
TTTCTTGGGATACTCTTCTG+GGG + Chr1:76180597-76180616 MsG0180004293.01.T01:intron 40.0%
! AACTGGCTTATATCAGTCGT+TGG + Chr1:76182106-76182125 MsG0180004293.01.T01:intron 40.0%
! CAGGGTCTTATGAAAGATTC+AGG + Chr1:76181687-76181706 MsG0180004293.01.T01:intron 40.0%
! GTCTCTTTTGCTCACTCTAT+AGG - Chr1:76181512-76181531 None:intergenic 40.0%
!! AACTCAAAAAAGGTGTTGGC+AGG - Chr1:76181888-76181907 None:intergenic 40.0%
!! GATAGGAGAGGTACTTGTAA+TGG + Chr1:76180698-76180717 MsG0180004293.01.T01:intron 40.0%
!! TACAATGGAAGTAATGGGTC+AGG - Chr1:76182559-76182578 None:intergenic 40.0%
!! TAGGAGAGGTACTTGTAATG+GGG + Chr1:76180700-76180719 MsG0180004293.01.T01:intron 40.0%
!!! CTTTTTTTTTTGGGGTAGCC+AGG + Chr1:76181165-76181184 MsG0180004293.01.T01:intron 40.0%
!!! GCTGCCCATTTTTTGTTTGA+TGG - Chr1:76181565-76181584 None:intergenic 40.0%
AAGAGCTGGAAAAGCTTGAG+AGG + Chr1:76182390-76182409 MsG0180004293.01.T01:CDS 45.0%
GCTATGAGAGACTTTGTCTC+TGG + Chr1:76181199-76181218 MsG0180004293.01.T01:intron 45.0%
GTTCTTGTTCTGCTCGGTTA+AGG + Chr1:76181905-76181924 MsG0180004293.01.T01:intron 45.0%
TGATGTGACATTACCTGCGT+TGG + Chr1:76181831-76181850 MsG0180004293.01.T01:intron 45.0%
TGCTTGGCAATGTCGAGAAA+AGG + Chr1:76182533-76182552 MsG0180004293.01.T01:CDS 45.0%
TTCTTGGGATACTCTTCTGG+GGG + Chr1:76180598-76180617 MsG0180004293.01.T01:intron 45.0%
! AGACTTTGTCTCTGGTTCAG+GGG + Chr1:76181207-76181226 MsG0180004293.01.T01:intron 45.0%
! AGAGACTTTGTCTCTGGTTC+AGG + Chr1:76181205-76181224 MsG0180004293.01.T01:intron 45.0%
! GAGACTTTGTCTCTGGTTCA+GGG + Chr1:76181206-76181225 MsG0180004293.01.T01:intron 45.0%
! GGATGAGTTTTGCTGAGACT+TGG + Chr1:76181458-76181477 MsG0180004293.01.T01:intron 45.0%
! TACACAAGAGGCTGTTTCCA+GGG + Chr1:76181669-76181688 MsG0180004293.01.T01:intron 45.0%
!! AGGAGAGGTACTTGTAATGG+GGG + Chr1:76180701-76180720 MsG0180004293.01.T01:intron 45.0%
!! ATGCAGGAGCATTAGTGCAA+CGG - Chr1:76181588-76181607 None:intergenic 45.0%
!! GGTGGCCAATTTTAGGTAAC+TGG + Chr1:76182089-76182108 MsG0180004293.01.T01:intron 45.0%
!!! GTTTGTTTTGCCAGGATGCT+TGG + Chr1:76182517-76182536 MsG0180004293.01.T01:intron 45.0%
!!! TGTCTGGTGTTTGTTTTGCC+AGG + Chr1:76182509-76182528 MsG0180004293.01.T01:intron 45.0%
AAAGTGGGTCGTCGGGTTAT+CGG - Chr1:76180333-76180352 None:intergenic 50.0%
ACTAATGCTCCTGCATACGC+AGG + Chr1:76181592-76181611 MsG0180004293.01.T01:intron 50.0%
ACTGAACAAAGTGGGTCGTC+GGG - Chr1:76180340-76180359 None:intergenic 50.0%
AGTCTCTCATAGCAATGGGG+TGG - Chr1:76181192-76181211 None:intergenic 50.0%
CTAATGCTCCTGCATACGCA+GGG + Chr1:76181593-76181612 MsG0180004293.01.T01:intron 50.0%
GAAGGACCCCAAGATTCCAA+AGG + Chr1:76182724-76182743 MsG0180004293.01.T01:CDS 50.0%
GACTGAACAAAGTGGGTCGT+CGG - Chr1:76180341-76180360 None:intergenic 50.0%
GCTGGAAAAGCTTGAGAGGA+TGG + Chr1:76182394-76182413 MsG0180004293.01.T01:CDS 50.0%
TGGTTCAGGGGTCTTCACTT+AGG + Chr1:76181219-76181238 MsG0180004293.01.T01:intron 50.0%
! CTACACAAGAGGCTGTTTCC+AGG + Chr1:76181668-76181687 MsG0180004293.01.T01:intron 50.0%
!! CAGCAGCCTTTGGAATCTTG+GGG - Chr1:76182733-76182752 None:intergenic 50.0%
!! GCAGCAGCCTTTGGAATCTT+GGG - Chr1:76182734-76182753 None:intergenic 50.0%
!! TGCAGCAGCCTTTGGAATCT+TGG - Chr1:76182735-76182754 None:intergenic 50.0%
!! TGCAGGAGCATTAGTGCAAC+GGG - Chr1:76181587-76181606 None:intergenic 50.0%
AAAAAGTGGTTGGAGGCCGC+TGG - Chr1:76182267-76182286 None:intergenic 55.0%
CAAATGGTGAGACCCCTTCC+TGG - Chr1:76181620-76181639 None:intergenic 55.0%
CCAAAGGCTGCTGCAGATGT+TGG + Chr1:76182740-76182759 MsG0180004293.01.T01:CDS 55.0%
CCAACATCTGCAGCAGCCTT+TGG - Chr1:76182743-76182762 None:intergenic 55.0%
CTCGACATTGCCAAGCATCC+TGG - Chr1:76182530-76182549 None:intergenic 55.0%
CATACGCAGGGTCCAGGAAG+GGG + Chr1:76181605-76181624 MsG0180004293.01.T01:intron 60.0%
GCATACGCAGGGTCCAGGAA+GGG + Chr1:76181604-76181623 MsG0180004293.01.T01:intron 60.0%
TCATAGCAATGGGGTGGCCC+TGG - Chr1:76181186-76181205 None:intergenic 60.0%
TGCATACGCAGGGTCCAGGA+AGG + Chr1:76181603-76181622 MsG0180004293.01.T01:intron 60.0%
TTCCTGGACCCTGCGTATGC+AGG - Chr1:76181604-76181623 None:intergenic 60.0%
CTCCTGCATACGCAGGGTCC+AGG + Chr1:76181599-76181618 MsG0180004293.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 76180308 76182771 76180308 ID=MsG0180004293.01;Name=MsG0180004293.01
Chr1 mRNA 76180308 76182771 76180308 ID=MsG0180004293.01.T01;Parent=MsG0180004293.01;Name=MsG0180004293.01.T01;_AED=0.19;_eAED=0.20;_QI=0|0|0|1|0|0|4|0|106
Chr1 exon 76182684 76182771 76182684 ID=MsG0180004293.01.T01:exon:12610;Parent=MsG0180004293.01.T01
Chr1 CDS 76180308 76180442 76180308 ID=MsG0180004293.01.T01:cds;Parent=MsG0180004293.01.T01
Chr1 CDS 76182389 76182441 76182389 ID=MsG0180004293.01.T01:cds;Parent=MsG0180004293.01.T01
Chr1 CDS 76182531 76182575 76182531 ID=MsG0180004293.01.T01:cds;Parent=MsG0180004293.01.T01
Chr1 CDS 76182684 76182771 76182684 ID=MsG0180004293.01.T01:cds;Parent=MsG0180004293.01.T01
Chr1 mRNA 76180308 76182716 76180308 ID=MsG0180004293.01.T02;Parent=MsG0180004293.01;Name=MsG0180004293.01.T02;_AED=0.24;_eAED=0.26;_QI=0|0|0|1|0|0|4|0|86
Chr1 exon 76182689 76182716 76182689 ID=MsG0180004293.01.T02:exon:12611;Parent=MsG0180004293.01.T02
Chr1 CDS 76180308 76180442 76180308 ID=MsG0180004293.01.T02:cds;Parent=MsG0180004293.01.T02
Chr1 CDS 76182389 76182441 76182389 ID=MsG0180004293.01.T02:cds;Parent=MsG0180004293.01.T02
Chr1 CDS 76182531 76182575 76182531 ID=MsG0180004293.01.T02:cds;Parent=MsG0180004293.01.T02
Chr1 CDS 76182689 76182716 76182689 ID=MsG0180004293.01.T02:cds;Parent=MsG0180004293.01.T02
Chr1 mRNA 76180308 76182579 76180308 ID=MsG0180004293.01.T03;Parent=MsG0180004293.01;Name=MsG0180004293.01.T03;_AED=0.27;_eAED=0.28;_QI=0|0|0|1|0|0|3|0|78
Chr1 exon 76182531 76182579 76182531 ID=MsG0180004293.01.T03:exon:12612;Parent=MsG0180004293.01.T03
Chr1 CDS 76180308 76180442 76180308 ID=MsG0180004293.01.T03:cds;Parent=MsG0180004293.01.T03
Chr1 CDS 76182389 76182441 76182389 ID=MsG0180004293.01.T03:cds;Parent=MsG0180004293.01.T03
Chr1 CDS 76182531 76182579 76182531 ID=MsG0180004293.01.T03:cds;Parent=MsG0180004293.01.T03
Gene Sequence

>MsG0180004293.01.T02

ATGCAATCGGATGGGTCTGAATCCGATAACCCGACGACCCACTTTGTTCAGTCTCAGTCTTTTTCAGATACAAGAGGGAAACATAGGATACATGCTGAACTTAAACGGTTGGAACAAGAAACAAGGTACTTAGAGGAAGAGCTGGAAAAGCTTGAGAGGATGGACAAAGCATCTGCATCGTGTAAAGAGATGCTTGGCAATGTCGAGAAAAGGCCTGACCCATTACTTCCATTTTGGTCCCTTAAATCCTATATGGGATAG

>MsG0180004293.01.T03

ATGCAATCGGATGGGTCTGAATCCGATAACCCGACGACCCACTTTGTTCAGTCTCAGTCTTTTTCAGATACAAGAGGGAAACATAGGATACATGCTGAACTTAAACGGTTGGAACAAGAAACAAGGTACTTAGAGGAAGAGCTGGAAAAGCTTGAGAGGATGGACAAAGCATCTGCATCGTGTAAAGAGATGCTTGGCAATGTCGAGAAAAGGCCTGACCCATTACTTCCATTGTAA

>MsG0180004293.01.T01

ATGCAATCGGATGGGTCTGAATCCGATAACCCGACGACCCACTTTGTTCAGTCTCAGTCTTTTTCAGATACAAGAGGGAAACATAGGATACATGCTGAACTTAAACGGTTGGAACAAGAAACAAGGTACTTAGAGGAAGAGCTGGAAAAGCTTGAGAGGATGGACAAAGCATCTGCATCGTGTAAAGAGATGCTTGGCAATGTCGAGAAAAGGCCTGACCCATTACTTCCATTAACAGTTGGTCCCTTAAATCCTATATGGGATAGATGGTTTGAAGGACCCCAAGATTCCAAAGGCTGCTGCAGATGTTGGATTCTCTGA
Protein sequence

>MsG0180004293.01.T02

MQSDGSESDNPTTHFVQSQSFSDTRGKHRIHAELKRLEQETRYLEEELEKLERMDKASASCKEMLGNVEKRPDPLLPFWSLKSYMG*

>MsG0180004293.01.T03

MQSDGSESDNPTTHFVQSQSFSDTRGKHRIHAELKRLEQETRYLEEELEKLERMDKASASCKEMLGNVEKRPDPLLPL*

>MsG0180004293.01.T01

MQSDGSESDNPTTHFVQSQSFSDTRGKHRIHAELKRLEQETRYLEEELEKLERMDKASASCKEMLGNVEKRPDPLLPLTVGPLNPIWDRWFEGPQDSKGCCRCWIL*