AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041729.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041729.01.T01 MTR_7g116940 100.000 125 0 0 16 140 24 148 1.89e-92 264
MsG0780041729.01.T01 MTR_3g062450 96.032 126 5 0 15 140 23 148 4.10e-90 258
MsG0780041729.01.T01 MTR_5g075580 95.238 126 6 0 15 140 23 148 1.88e-89 256
MsG0780041729.01.T01 MTR_7g116940 94.697 132 0 1 16 140 24 155 2.38e-89 256
MsG0780041729.01.T01 MTR_1g021150 91.406 128 11 0 13 140 29 156 1.72e-87 252
MsG0780041729.01.T01 MTR_1g021150 92.800 125 9 0 16 140 24 148 2.54e-87 251
MsG0780041729.01.T01 MTR_8g071040 92.063 126 10 0 15 140 23 148 7.68e-87 250
MsG0780041729.01.T01 MTR_4g073240 92.063 126 10 0 15 140 23 148 4.54e-86 248
MsG0780041729.01.T01 MTR_5g075580 95.798 119 5 0 22 140 1 119 2.04e-84 243
MsG0780041729.01.T01 MTR_4g073240 93.277 119 8 0 22 140 1 119 9.62e-82 236
MsG0780041729.01.T01 MTR_7g116940 94.253 87 5 0 15 101 23 109 1.18e-56 173
MsG0780041729.01.T01 MTR_4g073240 91.566 83 7 0 58 140 4 86 1.31e-53 164
MsG0780041729.01.T01 MTR_8g085690 51.613 124 60 0 15 138 44 167 1.76e-46 148
MsG0780041729.01.T01 MTR_2g078010 49.206 126 64 0 15 140 27 152 1.51e-41 135
MsG0780041729.01.T01 MTR_3g098780 51.240 121 58 1 19 138 29 149 6.19e-39 130
MsG0780041729.01.T01 MTR_3g098780 51.240 121 58 1 19 138 53 173 1.71e-38 130
MsG0780041729.01.T01 MTR_2g078010 44.286 140 64 1 15 140 27 166 1.11e-37 126
MsG0780041729.01.T01 MTR_2g078010 48.305 118 61 0 15 132 27 144 1.48e-36 122
MsG0780041729.01.T01 MTR_8g468530 45.968 124 62 1 16 134 43 166 2.58e-36 122
MsG0780041729.01.T01 MTR_4g108080 45.161 124 63 1 16 134 27 150 6.15e-36 121
MsG0780041729.01.T01 MTR_4g108080 46.789 109 53 1 31 134 42 150 7.76e-32 110
MsG0780041729.01.T01 MTR_4g076200 43.925 107 60 0 17 123 15 121 7.94e-31 108
MsG0780041729.01.T01 MTR_3g110110 42.975 121 67 2 21 139 33 153 9.62e-31 108
MsG0780041729.01.T01 MTR_1g095510 45.045 111 60 1 17 127 12 121 1.48e-30 107
MsG0780041729.01.T01 MTR_1g095510 47.115 104 55 0 17 120 66 169 2.33e-30 108
MsG0780041729.01.T01 MTR_4g076200 43.925 107 60 0 17 123 56 162 6.58e-30 107
MsG0780041729.01.T01 MTR_5g009020 41.441 111 64 1 17 127 56 165 1.25e-28 103
MsG0780041729.01.T01 MTR_1g095510 51.136 88 43 0 17 104 66 153 4.99e-28 102
MsG0780041729.01.T01 MTR_4g094872 39.496 119 70 1 21 137 37 155 3.34e-27 99.4
MsG0780041729.01.T01 MTR_4g063490 33.333 129 73 1 21 136 33 161 1.14e-26 98.2
MsG0780041729.01.T01 MTR_8g028920 37.398 123 75 2 18 138 25 147 4.92e-26 97.1
MsG0780041729.01.T01 MTR_2g078010 49.398 83 42 0 15 97 27 109 9.31e-26 94.4
MsG0780041729.01.T01 MTR_4g108080 48.193 83 43 0 16 98 27 109 3.01e-25 93.2
MsG0780041729.01.T01 MTR_5g019480 38.053 113 69 1 20 132 8 119 3.45e-25 93.6
MsG0780041729.01.T01 MTR_8g098595 39.091 110 65 2 31 138 23 132 3.84e-25 94.4
MsG0780041729.01.T01 MTR_5g019480 37.190 121 76 0 11 131 49 169 4.68e-25 94.7
MsG0780041729.01.T01 MTR_5g019480 37.190 121 76 0 11 131 46 166 4.85e-25 94.7
MsG0780041729.01.T01 MTR_2g096690 33.333 129 73 1 21 136 33 161 9.69e-25 93.2
MsG0780041729.01.T01 MTR_5g016630 36.134 119 74 1 21 137 37 155 3.27e-24 91.7
MsG0780041729.01.T01 MTR_8g028920 39.623 106 62 2 35 138 3 108 8.66e-24 90.1
MsG0780041729.01.T01 MTR_2g096690 33.333 129 72 2 21 136 33 160 2.91e-23 89.4
MsG0780041729.01.T01 MTR_4g106690 30.894 123 83 2 18 138 25 147 5.12e-22 86.7
MsG0780041729.01.T01 MTR_7g087590 36.607 112 71 0 27 138 44 155 2.52e-20 84.0
MsG0780041729.01.T01 MTR_8g076490 40.244 82 48 1 14 94 35 116 4.03e-16 70.9
MsG0780041729.01.T01 MTR_2g096690 36.905 84 40 1 21 91 33 116 4.69e-16 69.7
MsG0780041729.01.T01 MTR_5g021260 39.326 89 49 2 12 99 33 117 1.95e-15 69.3
MsG0780041729.01.T01 MTR_1g028540 71.739 46 13 0 94 139 83 128 8.36e-15 66.6
MsG0780041729.01.T01 MTR_1g028540 64.865 37 13 0 103 139 26 62 8.47e-11 56.2
MsG0780041729.01.T01 MTR_1g073600 26.606 109 66 2 25 132 25 120 7.71e-13 61.6
MsG0780041729.01.T01 MTR_0274s0030 33.019 106 61 3 12 107 130 235 3.28e-12 62.8
MsG0780041729.01.T01 MTR_7g023760 32.075 106 62 3 12 107 107 212 3.67e-12 62.4
MsG0780041729.01.T01 MTR_4g088835 31.746 126 73 4 20 135 696 818 5.73e-12 62.4
MsG0780041729.01.T01 MTR_7g451800 36.957 92 48 3 26 107 68 159 7.12e-12 61.6
MsG0780041729.01.T01 MTR_7g047620 36.957 92 48 3 26 107 68 159 7.12e-12 61.6
MsG0780041729.01.T01 MTR_4g121960 33.333 96 54 4 17 106 34 125 1.21e-11 60.8
MsG0780041729.01.T01 MTR_7g047570 36.957 92 48 3 26 107 68 159 1.35e-11 60.8
MsG0780041729.01.T01 MTR_7g451770 36.957 92 48 3 26 107 68 159 1.35e-11 60.8
MsG0780041729.01.T01 MTR_1g112730 33.696 92 51 3 26 107 886 977 1.61e-11 61.2
MsG0780041729.01.T01 MTR_2g013650 30.579 121 71 4 26 136 712 829 4.15e-11 59.7
MsG0780041729.01.T01 MTR_4g020620 33.962 106 60 3 12 107 645 750 4.42e-11 59.7
MsG0780041729.01.T01 MTR_1g092440 32.075 106 62 3 12 107 397 502 5.19e-11 59.7
MsG0780041729.01.T01 MTR_1g092465 30.534 131 70 5 17 136 256 376 5.46e-11 59.3
MsG0780041729.01.T01 MTR_4g020620 33.962 106 60 3 12 107 587 692 5.52e-11 59.3
MsG0780041729.01.T01 MTR_8g023380 31.250 96 57 3 17 107 29 120 7.21e-11 58.2
MsG0780041729.01.T01 MTR_1g092460 31.132 106 63 3 12 107 193 298 8.64e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041729.01.T01 AT5G41700 93.077 130 9 0 11 140 20 149 3.34e-90 258
MsG0780041729.01.T01 AT1G64230 95.238 126 6 0 15 140 23 148 5.17e-90 258
MsG0780041729.01.T01 AT1G64230 95.238 126 6 0 15 140 23 148 5.17e-90 258
MsG0780041729.01.T01 AT3G08690 92.308 130 10 0 11 140 19 148 8.56e-90 257
MsG0780041729.01.T01 AT3G08690 92.308 130 10 0 11 140 19 148 8.56e-90 257
MsG0780041729.01.T01 AT5G53300 95.238 126 6 0 15 140 23 148 1.36e-89 257
MsG0780041729.01.T01 AT5G53300 95.238 126 6 0 15 140 23 148 1.36e-89 257
MsG0780041729.01.T01 AT5G53300 95.238 126 6 0 15 140 23 148 1.36e-89 257
MsG0780041729.01.T01 AT1G64230 90.152 132 13 0 9 140 59 190 1.78e-89 258
MsG0780041729.01.T01 AT1G64230 90.152 132 13 0 9 140 59 190 1.78e-89 258
MsG0780041729.01.T01 AT1G64230 95.238 126 6 0 15 140 32 157 3.76e-89 256
MsG0780041729.01.T01 AT5G41700 94.444 126 7 0 15 140 23 148 4.34e-89 256
MsG0780041729.01.T01 AT5G41700 94.444 126 7 0 15 140 23 148 4.34e-89 256
MsG0780041729.01.T01 AT5G41700 94.444 126 7 0 15 140 23 148 4.34e-89 256
MsG0780041729.01.T01 AT4G27960 95.200 125 6 0 16 140 24 148 4.59e-89 256
MsG0780041729.01.T01 AT4G27960 94.444 126 7 0 15 140 53 178 2.12e-88 255
MsG0780041729.01.T01 AT5G56150 89.683 126 13 0 15 140 23 148 1.03e-84 244
MsG0780041729.01.T01 AT2G16740 87.200 125 16 0 15 139 23 147 6.56e-82 238
MsG0780041729.01.T01 AT3G08700 81.102 127 23 1 15 140 23 149 4.52e-74 218
MsG0780041729.01.T01 AT3G08700 81.102 127 23 1 15 140 23 149 4.52e-74 218
MsG0780041729.01.T01 AT5G41700 93.902 82 5 0 15 96 23 104 1.34e-54 168
MsG0780041729.01.T01 AT5G53300 91.954 87 5 1 15 99 23 109 4.65e-54 166
MsG0780041729.01.T01 AT5G56150 87.654 81 10 0 15 95 23 103 1.55e-50 157
MsG0780041729.01.T01 AT1G36340 52.846 123 58 0 16 138 30 152 5.70e-44 142
MsG0780041729.01.T01 AT1G36340 52.846 123 58 0 16 138 30 152 5.70e-44 142
MsG0780041729.01.T01 AT3G13550 47.581 124 65 0 15 138 58 181 1.08e-43 142
MsG0780041729.01.T01 AT1G16890 50.794 126 62 0 15 140 27 152 1.16e-42 138
MsG0780041729.01.T01 AT1G16890 50.794 126 62 0 15 140 36 161 1.62e-42 138
MsG0780041729.01.T01 AT1G78870 50.000 126 63 0 15 140 27 152 7.27e-42 136
MsG0780041729.01.T01 AT1G16890 52.101 119 57 0 22 140 1 119 2.49e-41 134
MsG0780041729.01.T01 AT1G78870 52.101 119 57 0 22 140 1 119 4.21e-41 133
MsG0780041729.01.T01 AT1G78870 51.667 120 57 1 22 140 1 120 2.48e-39 129
MsG0780041729.01.T01 AT5G62540 50.000 112 56 0 16 127 27 138 1.82e-37 125
MsG0780041729.01.T01 AT1G14400 45.968 124 62 1 16 134 27 150 4.12e-36 122
MsG0780041729.01.T01 AT1G14400 45.968 124 62 1 16 134 27 150 4.12e-36 122
MsG0780041729.01.T01 AT5G50870 47.967 123 63 1 17 138 27 149 1.09e-35 122
MsG0780041729.01.T01 AT2G02760 45.161 124 63 1 16 134 27 150 1.15e-35 120
MsG0780041729.01.T01 AT2G02760 45.161 124 63 1 16 134 27 150 1.15e-35 120
MsG0780041729.01.T01 AT2G02760 45.161 124 63 1 16 134 27 150 1.15e-35 120
MsG0780041729.01.T01 AT2G02760 45.161 124 63 1 16 134 27 150 1.15e-35 120
MsG0780041729.01.T01 AT2G32790 53.175 126 55 2 17 140 54 177 1.41e-35 121
MsG0780041729.01.T01 AT3G24515 49.138 116 55 1 27 138 49 164 3.42e-33 120
MsG0780041729.01.T01 AT3G24515 46.721 122 61 1 21 138 68 189 4.31e-33 120
MsG0780041729.01.T01 AT3G13550 50.000 92 46 0 16 107 59 150 1.66e-32 113
MsG0780041729.01.T01 AT5G50870 44.030 134 63 2 17 138 27 160 2.37e-32 114
MsG0780041729.01.T01 AT5G25760 42.149 121 68 2 21 139 33 153 8.93e-30 105
MsG0780041729.01.T01 AT5G25760 42.149 121 68 2 21 139 33 153 8.93e-30 105
MsG0780041729.01.T01 AT1G50490 42.342 111 63 1 17 127 59 168 1.87e-28 103
MsG0780041729.01.T01 AT3G20060 41.441 111 64 1 17 127 15 124 4.49e-28 100
MsG0780041729.01.T01 AT3G20060 41.441 111 64 1 17 127 60 169 1.15e-27 101
MsG0780041729.01.T01 AT2G46030 39.024 123 73 2 18 138 28 150 1.57e-27 100
MsG0780041729.01.T01 AT2G46030 39.024 123 73 2 18 138 28 150 1.57e-27 100
MsG0780041729.01.T01 AT2G46030 39.024 123 73 2 18 138 25 147 1.81e-27 100
MsG0780041729.01.T01 AT2G46030 39.024 123 73 2 18 138 25 147 1.81e-27 100
MsG0780041729.01.T01 AT2G46030 39.024 123 73 2 18 138 97 219 4.33e-27 101
MsG0780041729.01.T01 AT3G55380 35.537 121 65 1 20 127 33 153 1.30e-26 98.2
MsG0780041729.01.T01 AT1G78870 50.000 86 43 0 15 100 27 112 1.63e-26 96.3
MsG0780041729.01.T01 AT5G41340 38.211 123 74 2 18 138 25 147 2.44e-26 98.2
MsG0780041729.01.T01 AT1G63800 41.818 110 62 2 31 138 23 132 3.18e-26 97.4
MsG0780041729.01.T01 AT1G63800 41.818 110 62 2 31 138 38 147 4.24e-26 97.4
MsG0780041729.01.T01 AT5G59300 33.846 130 73 1 20 136 32 161 2.14e-25 95.1
MsG0780041729.01.T01 AT3G57870 37.815 119 72 1 21 137 38 156 3.06e-25 94.4
MsG0780041729.01.T01 AT3G46460 33.077 130 74 1 20 136 32 161 3.41e-25 94.4
MsG0780041729.01.T01 AT4G36800 38.393 112 68 1 20 131 57 167 9.71e-25 94.0
MsG0780041729.01.T01 AT4G36800 38.393 112 68 1 20 131 57 167 9.71e-25 94.0
MsG0780041729.01.T01 AT5G41340 40.385 104 60 2 37 138 9 112 1.42e-23 90.1
MsG0780041729.01.T01 AT5G05080 37.815 119 74 0 20 138 37 155 5.33e-23 90.9
MsG0780041729.01.T01 AT5G05080 37.815 119 74 0 20 138 37 155 5.33e-23 90.9
MsG0780041729.01.T01 AT5G05080 37.815 119 74 0 20 138 37 155 5.33e-23 90.9
MsG0780041729.01.T01 AT5G05080 37.815 119 74 0 20 138 37 155 5.33e-23 90.9
MsG0780041729.01.T01 AT2G18600 36.937 111 69 1 21 131 59 168 5.31e-22 86.7
MsG0780041729.01.T01 AT2G18600 36.937 111 69 1 21 131 59 168 5.31e-22 86.7
MsG0780041729.01.T01 AT3G55380 27.742 155 65 2 20 127 33 187 1.67e-19 80.9
MsG0780041729.01.T01 AT3G46460 30.631 111 64 1 39 136 9 119 4.71e-17 72.4
MsG0780041729.01.T01 AT3G46460 30.631 111 64 1 39 136 9 119 4.71e-17 72.4
MsG0780041729.01.T01 AT1G75440 40.449 89 48 2 12 99 33 117 6.13e-16 70.5
MsG0780041729.01.T01 AT1G45050 39.286 84 50 1 12 94 33 116 1.25e-15 69.7
MsG0780041729.01.T01 AT5G42990 40.476 84 49 1 12 94 33 116 3.02e-15 68.6
MsG0780041729.01.T01 AT4G36410 37.079 89 51 2 12 99 33 117 7.61e-15 67.8
MsG0780041729.01.T01 AT3G17000 36.458 96 51 4 17 106 35 126 1.42e-13 66.2
MsG0780041729.01.T01 AT5G50430 32.039 103 61 3 10 107 22 120 4.51e-12 61.6
MsG0780041729.01.T01 AT5G50430 32.039 103 61 3 10 107 22 120 4.51e-12 61.6
MsG0780041729.01.T01 AT1G17280 32.039 103 61 3 10 107 22 120 5.54e-12 61.2
MsG0780041729.01.T01 AT1G17280 32.039 103 61 3 10 107 22 120 5.54e-12 61.2
MsG0780041729.01.T01 AT1G17280 32.039 103 61 3 10 107 22 120 5.54e-12 61.2
MsG0780041729.01.T01 AT1G17280 32.039 103 61 3 10 107 22 120 5.54e-12 61.2
MsG0780041729.01.T01 AT1G17280 32.039 103 61 3 10 107 22 120 5.54e-12 61.2
MsG0780041729.01.T01 AT1G17280 32.039 103 61 3 10 107 22 120 5.54e-12 61.2
MsG0780041729.01.T01 AT1G17280 32.039 103 61 3 10 107 22 120 5.54e-12 61.2
MsG0780041729.01.T01 AT1G17280 32.039 103 61 3 10 107 22 120 5.54e-12 61.2
MsG0780041729.01.T01 AT1G17280 30.392 102 56 3 17 107 29 126 9.49e-11 58.2

Find 65 sgRNAs with CRISPR-Local

Find 125 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATATGATATTAATATTAT+TGG 0.139100 7:-94495867 None:intergenic
CTACCATTGCTGTTGATATT+TGG 0.157251 7:-94494524 None:intergenic
TTCTCTTGCAGGTTGCCTTT+AGG 0.247317 7:+94494486 MsG0780041729.01.T01:intron
TCTACCCTTCAATATGTTAA+AGG 0.256916 7:-94495764 None:intergenic
GATATGATATTAATATTATT+GGG 0.302274 7:-94495866 None:intergenic
TACCATTGCTGTTGATATTT+GGG 0.310209 7:-94494523 None:intergenic
TCATTGGCAAGCAACTATAA+TGG 0.311891 7:+94494170 MsG0780041729.01.T01:CDS
CCGAGCAGTGGTTTCATACT+TGG 0.316742 7:-94495511 None:intergenic
CCCCGCTTTGACAATATCTA+AGG 0.320617 7:+94494580 MsG0780041729.01.T01:CDS
CTTAAAATGCAGAATCTTAC+CGG 0.334161 7:-94495639 None:intergenic
TTGTACATATGAGCTATTTC+AGG 0.338906 7:-94495477 None:intergenic
TCAGGCACTAAGGGATCATC+TGG 0.351772 7:-94495459 None:intergenic
CCTCCGGCATAAGGGCTATC+GGG 0.361129 7:-94494198 None:intergenic
CATTGGCAAGCAACTATAAT+GGG 0.363377 7:+94494171 MsG0780041729.01.T01:CDS
ATCCATTTGTTCCCTGTTGA+CGG 0.377667 7:+94495428 MsG0780041729.01.T01:CDS
CTGGGTTTGGATCCGTCAAC+AGG 0.381343 7:-94495440 None:intergenic
AATACCTTGGGTGGCTTGAA+TGG 0.396161 7:-94494258 None:intergenic
AAATACCCTACCGGAGCTTC+CGG 0.406576 7:+94495620 MsG0780041729.01.T01:three_prime_UTR
CATTTGTCTTGATATCTTGA+AGG 0.425170 7:+94494547 MsG0780041729.01.T01:CDS
TGAAACATGTCTTCTGCTAC+AGG 0.438785 7:-94494150 None:intergenic
GGTGGCTTGAATGGATAATC+AGG 0.441447 7:-94494249 None:intergenic
TCCTGCCTTTAACATATTGA+AGG 0.445265 7:+94495759 MsG0780041729.01.T01:three_prime_UTR
ATGAGCTATTTCAGGCACTA+AGG 0.452215 7:-94495469 None:intergenic
ACATCATGACACTTGACAAA+TGG 0.455050 7:-94495709 None:intergenic
ATCCGTCAACAGGGAACAAA+TGG 0.455293 7:-94495430 None:intergenic
TAGCAGAAGACATGTTTCAT+TGG 0.456534 7:+94494154 MsG0780041729.01.T01:CDS
ACCTTAGATATTGTCAAAGC+GGG 0.466865 7:-94494581 None:intergenic
TTGGATGAGCAATCACTTGT+TGG 0.471250 7:+94495666 MsG0780041729.01.T01:three_prime_UTR
TCCTCCGGCATAAGGGCTAT+CGG 0.475958 7:-94494199 None:intergenic
GTGGAAAACTTTGGTCCTAA+AGG 0.478534 7:-94494501 None:intergenic
CACTTGACAAATGGAACTAA+AGG 0.479533 7:-94495700 None:intergenic
ATGAAACCACTGCTCGGAGC+TGG 0.483029 7:+94495517 MsG0780041729.01.T01:CDS
ACTAAGGGATCATCTGGGTT+TGG 0.496633 7:-94495453 None:intergenic
CAGAATCTTACCGGAAGCTC+CGG 0.502715 7:-94495630 None:intergenic
GATATTTGGGTGGAAAACTT+TGG 0.515591 7:-94494510 None:intergenic
CCCTTCAATATGTTAAAGGC+AGG 0.522335 7:-94495760 None:intergenic
TTCTGCTACAGGGCCTGTGA+AGG 0.524293 7:-94494139 None:intergenic
CTCCGGCATAAGGGCTATCG+GGG 0.536589 7:-94494197 None:intergenic
TGGACTCAGAAGTATGCAAT+GGG 0.546656 7:+94495537 MsG0780041729.01.T01:CDS
CAATGGGCTAGCAAGAATGT+TGG 0.547649 7:+94495553 MsG0780041729.01.T01:exon
CTCATATGTACAAGACAGAC+AGG 0.552335 7:+94495487 MsG0780041729.01.T01:CDS
CTGAGTCCAGCTCCGAGCAG+TGG 0.563687 7:-94495523 None:intergenic
TGAGCTATTTCAGGCACTAA+GGG 0.565316 7:-94495468 None:intergenic
CCTGCCTTTAACATATTGAA+GGG 0.573198 7:+94495760 MsG0780041729.01.T01:three_prime_UTR
CTGGACTCAGAAGTATGCAA+TGG 0.576388 7:+94495536 MsG0780041729.01.T01:CDS
CCGGCATAAGGGCTATCGGG+GGG 0.578253 7:-94494195 None:intergenic
CATTGCTGTTGATATTTGGG+TGG 0.580692 7:-94494520 None:intergenic
AAACTGTCAAAATACCCTAC+CGG 0.582333 7:+94495611 MsG0780041729.01.T01:three_prime_UTR
TACAGGGCCTGTGAAGGTAG+TGG 0.584869 7:-94494133 None:intergenic
CACCCAAATATCAACAGCAA+TGG 0.585534 7:+94494521 MsG0780041729.01.T01:CDS
CCCGATAGCCCTTATGCCGG+AGG 0.589705 7:+94494198 MsG0780041729.01.T01:CDS
ATAATCAGGAGGAAAATGAA+TGG 0.590246 7:-94494235 None:intergenic
TCCGGCATAAGGGCTATCGG+GGG 0.592985 7:-94494196 None:intergenic
CCAAGTATGAAACCACTGCT+CGG 0.606579 7:+94495511 MsG0780041729.01.T01:CDS
TTGATATCTTGAAGGAGCAG+TGG 0.609569 7:+94494555 MsG0780041729.01.T01:CDS
ACAAAGTCCAATACCTTGGG+TGG 0.615790 7:-94494267 None:intergenic
TCTTACCGGAAGCTCCGGTA+GGG 0.623253 7:-94495625 None:intergenic
ATCTTACCGGAAGCTCCGGT+AGG 0.624374 7:-94495626 None:intergenic
CAGGCACTAAGGGATCATCT+GGG 0.628144 7:-94495458 None:intergenic
AACCTTAGATATTGTCAAAG+CGG 0.632820 7:-94494582 None:intergenic
GAAACATGTCTTCTGCTACA+GGG 0.642755 7:-94494149 None:intergenic
TGGGTTTGGATCCGTCAACA+GGG 0.654519 7:-94495439 None:intergenic
GGCTTGAATGGATAATCAGG+AGG 0.662651 7:-94494246 None:intergenic
TTATCCATTCAAGCCACCCA+AGG 0.669594 7:+94494254 MsG0780041729.01.T01:CDS
CCTTAGATATTGTCAAAGCG+GGG 0.699087 7:-94494580 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATATGATATTAATATTAT+TGG - Chr7:94495870-94495889 None:intergenic 10.0%
!! GATATGATATTAATATTATT+GGG - Chr7:94495869-94495888 None:intergenic 10.0%
!! ACCAATTTCAAAAAGATTAT+TGG + Chr7:94494954-94494973 MsG0780041729.01.T01:intron 20.0%
!!! AAAAAAAATTTTAGCACAAG+TGG - Chr7:94494648-94494667 None:intergenic 20.0%
!!! ACCAATAATCTTTTTGAAAT+TGG - Chr7:94494958-94494977 None:intergenic 20.0%
! ATAAAAGAATGACACACTAA+GGG - Chr7:94495307-94495326 None:intergenic 25.0%
! ATTCATCATAAATGCAAAAC+TGG - Chr7:94494930-94494949 None:intergenic 25.0%
!! AAATACATTTTTGCAACTCT+AGG + Chr7:94494688-94494707 MsG0780041729.01.T01:intron 25.0%
!! ATTACTACTGTTTCTTAAGT+GGG + Chr7:94495368-94495387 MsG0780041729.01.T01:intron 25.0%
!! TATTACTACTGTTTCTTAAG+TGG + Chr7:94495367-94495386 MsG0780041729.01.T01:intron 25.0%
!! TTTTGTTGATGTGATACAAT+TGG + Chr7:94495238-94495257 MsG0780041729.01.T01:intron 25.0%
!!! ATGTGTTGATGATGTTTATT+CGG + Chr7:94495095-94495114 MsG0780041729.01.T01:intron 25.0%
!!! GTATGCTTTGAAATATCTTA+AGG + Chr7:94495143-94495162 MsG0780041729.01.T01:intron 25.0%
AAAACAAAGTCCAATACCTT+GGG - Chr7:94494273-94494292 None:intergenic 30.0%
AACCTTAGATATTGTCAAAG+CGG - Chr7:94494585-94494604 None:intergenic 30.0%
ATAATCAGGAGGAAAATGAA+TGG - Chr7:94494238-94494257 None:intergenic 30.0%
CACAAAAGTTGGACTTTATT+AGG + Chr7:94495001-94495020 MsG0780041729.01.T01:intron 30.0%
CATTTGTCTTGATATCTTGA+AGG + Chr7:94494547-94494566 MsG0780041729.01.T01:CDS 30.0%
CTTAAAATGCAGAATCTTAC+CGG - Chr7:94495642-94495661 None:intergenic 30.0%
GATAAAAGAATGACACACTA+AGG - Chr7:94495308-94495327 None:intergenic 30.0%
GGAATTTATAGCAACAACTT+AGG - Chr7:94495280-94495299 None:intergenic 30.0%
GGACTTTATTAGGTTTACAA+AGG + Chr7:94494747-94494766 MsG0780041729.01.T01:intron 30.0%
TAAAAGAATGACACACTAAG+GGG - Chr7:94495306-94495325 None:intergenic 30.0%
TCTACCCTTCAATATGTTAA+AGG - Chr7:94495767-94495786 None:intergenic 30.0%
TGGTAACTTTGGACTTTATT+AGG + Chr7:94494737-94494756 MsG0780041729.01.T01:intron 30.0%
! ATAAAGTCCAACTTTTGTGA+AGG - Chr7:94495000-94495019 None:intergenic 30.0%
! TAAGATTCTGCATTTTAAGC+TGG + Chr7:94495643-94495662 MsG0780041729.01.T01:three_prime_UTR 30.0%
! TACCATTGCTGTTGATATTT+GGG - Chr7:94494526-94494545 None:intergenic 30.0%
! TCTTTTATCATTGCAATGCA+TGG + Chr7:94495319-94495338 MsG0780041729.01.T01:intron 30.0%
! TTGTACATATGAGCTATTTC+AGG - Chr7:94495480-94495499 None:intergenic 30.0%
!!! GACAGTTTTTAGCATATAAG+AGG - Chr7:94495599-94495618 None:intergenic 30.0%
!!! TTTAACCTTTTTTCTCTTGC+AGG + Chr7:94494475-94494494 MsG0780041729.01.T01:intron 30.0%
!!! TTTGTTTTGCTTGACATATC+AGG + Chr7:94494285-94494304 MsG0780041729.01.T01:intron 30.0%
AAACTGTCAAAATACCCTAC+CGG + Chr7:94495611-94495630 MsG0780041729.01.T01:three_prime_UTR 35.0%
ACATCATGACACTTGACAAA+TGG - Chr7:94495712-94495731 None:intergenic 35.0%
ACCTTAGATATTGTCAAAGC+GGG - Chr7:94494584-94494603 None:intergenic 35.0%
ATTCGTCGTAAATGCATAAC+TGG - Chr7:94495197-94495216 None:intergenic 35.0%
CAAAACAAAGTCCAATACCT+TGG - Chr7:94494274-94494293 None:intergenic 35.0%
CAACAACTTAGGAATTGTGA+CGG - Chr7:94495269-94495288 None:intergenic 35.0%
CACTTGACAAATGGAACTAA+AGG - Chr7:94495703-94495722 None:intergenic 35.0%
CATTGGCAAGCAACTATAAT+GGG + Chr7:94494171-94494190 MsG0780041729.01.T01:CDS 35.0%
CCTGCCTTTAACATATTGAA+GGG + Chr7:94495760-94495779 MsG0780041729.01.T01:three_prime_UTR 35.0%
GAAAGACCTTACAAGTAAAC+TGG - Chr7:94495175-94495194 None:intergenic 35.0%
GAGGAGGTTAAGTATCATAA+AGG - Chr7:94494354-94494373 None:intergenic 35.0%
GATATTTGGGTGGAAAACTT+TGG - Chr7:94494513-94494532 None:intergenic 35.0%
GATGTTTACTCTGCATAATC+AGG + Chr7:94494841-94494860 MsG0780041729.01.T01:intron 35.0%
GATGTTTATTCGGCATAATC+TGG + Chr7:94495105-94495124 MsG0780041729.01.T01:intron 35.0%
TAGCAGAAGACATGTTTCAT+TGG + Chr7:94494154-94494173 MsG0780041729.01.T01:CDS 35.0%
TCATTGGCAAGCAACTATAA+TGG + Chr7:94494170-94494189 MsG0780041729.01.T01:CDS 35.0%
TCCTGCCTTTAACATATTGA+AGG + Chr7:94495759-94495778 MsG0780041729.01.T01:three_prime_UTR 35.0%
TTGAGTTAACGAGTTAAGCA+TGG - Chr7:94494611-94494630 None:intergenic 35.0%
! ATTCTGCATTTTAAGCTGGT+TGG + Chr7:94495647-94495666 MsG0780041729.01.T01:three_prime_UTR 35.0%
! CTACCATTGCTGTTGATATT+TGG - Chr7:94494527-94494546 None:intergenic 35.0%
! GGTTTGTGTTTGGTTATTTC+AGG + Chr7:94495398-94495417 MsG0780041729.01.T01:intron 35.0%
! TCCAAATACAAGCTTTGATC+TGG + Chr7:94494408-94494427 MsG0780041729.01.T01:intron 35.0%
! TCTAGGATATGTGTGTGTTT+CGG + Chr7:94494705-94494724 MsG0780041729.01.T01:intron 35.0%
!! AATCGTTTTGTTACTCAGAC+AGG - Chr7:94495802-94495821 None:intergenic 35.0%
ACTTAACCTCCTCTATTTCC+TGG + Chr7:94494361-94494380 MsG0780041729.01.T01:intron 40.0%
ATCCATTTGTTCCCTGTTGA+CGG + Chr7:94495428-94495447 MsG0780041729.01.T01:CDS 40.0%
CACCCAAATATCAACAGCAA+TGG + Chr7:94494521-94494540 MsG0780041729.01.T01:CDS 40.0%
CCCTTCAATATGTTAAAGGC+AGG - Chr7:94495763-94495782 None:intergenic 40.0%
CCTTAGATATTGTCAAAGCG+GGG - Chr7:94494583-94494602 None:intergenic 40.0%
CTCATATGTACAAGACAGAC+AGG + Chr7:94495487-94495506 MsG0780041729.01.T01:CDS 40.0%
GAAACATGTCTTCTGCTACA+GGG - Chr7:94494152-94494171 None:intergenic 40.0%
GCCAGATCAAAGCTTGTATT+TGG - Chr7:94494412-94494431 None:intergenic 40.0%
GGTAACTAGAAAAACTCCTC+CGG - Chr7:94494217-94494236 None:intergenic 40.0%
GTGGAAAACTTTGGTCCTAA+AGG - Chr7:94494504-94494523 None:intergenic 40.0%
TAGCTGCCAGTTTACTTGTA+AGG + Chr7:94495166-94495185 MsG0780041729.01.T01:intron 40.0%
TGAAACATGTCTTCTGCTAC+AGG - Chr7:94494153-94494172 None:intergenic 40.0%
TGTCGAACCTTCACAAAAGT+TGG + Chr7:94494990-94495009 MsG0780041729.01.T01:intron 40.0%
TTGATATCTTGAAGGAGCAG+TGG + Chr7:94494555-94494574 MsG0780041729.01.T01:CDS 40.0%
TTGGATGAGCAATCACTTGT+TGG + Chr7:94495666-94495685 MsG0780041729.01.T01:three_prime_UTR 40.0%
! ACTACTGTTTCTTAAGTGGG+TGG + Chr7:94495371-94495390 MsG0780041729.01.T01:intron 40.0%
! ATGAGCTATTTCAGGCACTA+AGG - Chr7:94495472-94495491 None:intergenic 40.0%
! CATTGCTGTTGATATTTGGG+TGG - Chr7:94494523-94494542 None:intergenic 40.0%
! CTACTGTTTCTTAAGTGGGT+GGG + Chr7:94495372-94495391 MsG0780041729.01.T01:intron 40.0%
! GTTTTATCCACTACCTTCAC+AGG + Chr7:94494126-94494145 MsG0780041729.01.T01:CDS 40.0%
! TGAGCTATTTCAGGCACTAA+GGG - Chr7:94495471-94495490 None:intergenic 40.0%
! TGGACTCAGAAGTATGCAAT+GGG + Chr7:94495537-94495556 MsG0780041729.01.T01:CDS 40.0%
! TTTTTCCAGCCAGGAAATAG+AGG - Chr7:94494373-94494392 None:intergenic 40.0%
!!! CTCACAATTTTTTTCCAGCC+AGG - Chr7:94494382-94494401 None:intergenic 40.0%
AATACCTTGGGTGGCTTGAA+TGG - Chr7:94494261-94494280 None:intergenic 45.0%
ACAAAGTCCAATACCTTGGG+TGG - Chr7:94494270-94494289 None:intergenic 45.0%
ACTAAGGGATCATCTGGGTT+TGG - Chr7:94495456-94495475 None:intergenic 45.0%
AGAAAAACTCCTCCGGCATA+AGG - Chr7:94494210-94494229 None:intergenic 45.0%
ATCCGTCAACAGGGAACAAA+TGG - Chr7:94495433-94495452 None:intergenic 45.0%
ATTCAAGCCACCCAAGGTAT+TGG + Chr7:94494260-94494279 MsG0780041729.01.T01:intron 45.0%
CCAAGTATGAAACCACTGCT+CGG + Chr7:94495511-94495530 MsG0780041729.01.T01:CDS 45.0%
CCCCGCTTTGACAATATCTA+AGG + Chr7:94494580-94494599 MsG0780041729.01.T01:CDS 45.0%
GAAAAACTCCTCCGGCATAA+GGG - Chr7:94494209-94494228 None:intergenic 45.0%
GAATGACACACTAAGGGGAA+CGG - Chr7:94495301-94495320 None:intergenic 45.0%
GGCAACCTGCAAGAGAAAAA+AGG - Chr7:94494483-94494502 None:intergenic 45.0%
GGCTTGAATGGATAATCAGG+AGG - Chr7:94494249-94494268 None:intergenic 45.0%
GGTAGTGAGTCTGGTAACTT+TGG + Chr7:94494726-94494745 MsG0780041729.01.T01:intron 45.0%
GGTGGCTTGAATGGATAATC+AGG - Chr7:94494252-94494271 None:intergenic 45.0%
GTTTCTTAAGTGGGTGGGAA+AGG + Chr7:94495377-94495396 MsG0780041729.01.T01:intron 45.0%
TTATCCATTCAAGCCACCCA+AGG + Chr7:94494254-94494273 MsG0780041729.01.T01:CDS 45.0%
TTCTCTTGCAGGTTGCCTTT+AGG + Chr7:94494486-94494505 MsG0780041729.01.T01:intron 45.0%
! CTGGACTCAGAAGTATGCAA+TGG + Chr7:94495536-94495555 MsG0780041729.01.T01:CDS 45.0%
!! CAATGGGCTAGCAAGAATGT+TGG + Chr7:94495553-94495572 MsG0780041729.01.T01:exon 45.0%
!!! ATTCAAATTAAATTTTAAAA+AGG + Chr7:94495215-94495234 MsG0780041729.01.T01:intron 5.0%
AAATACCCTACCGGAGCTTC+CGG + Chr7:94495620-94495639 MsG0780041729.01.T01:three_prime_UTR 50.0%
AACCTCCTCTATTTCCTGGC+TGG + Chr7:94494365-94494384 MsG0780041729.01.T01:intron 50.0%
CAGAATCTTACCGGAAGCTC+CGG - Chr7:94495633-94495652 None:intergenic 50.0%
CAGGCACTAAGGGATCATCT+GGG - Chr7:94495461-94495480 None:intergenic 50.0%
CCGAGCAGTGGTTTCATACT+TGG - Chr7:94495514-94495533 None:intergenic 50.0%
GGGTGGGAAAGGTTTGTGTT+TGG + Chr7:94495388-94495407 MsG0780041729.01.T01:intron 50.0%
GTGTGTTTCGGTAGTGAGTC+TGG + Chr7:94494717-94494736 MsG0780041729.01.T01:intron 50.0%
TCAGGCACTAAGGGATCATC+TGG - Chr7:94495462-94495481 None:intergenic 50.0%
TGGGTTTGGATCCGTCAACA+GGG - Chr7:94495442-94495461 None:intergenic 50.0%
TTCCAGCCAGGAAATAGAGG+AGG - Chr7:94494370-94494389 None:intergenic 50.0%
ATCTTACCGGAAGCTCCGGT+AGG - Chr7:94495629-94495648 None:intergenic 55.0%
ATGAAACCACTGCTCGGAGC+TGG + Chr7:94495517-94495536 MsG0780041729.01.T01:CDS 55.0%
CTGGGTTTGGATCCGTCAAC+AGG - Chr7:94495443-94495462 None:intergenic 55.0%
TACAGGGCCTGTGAAGGTAG+TGG - Chr7:94494136-94494155 None:intergenic 55.0%
TCCTCCGGCATAAGGGCTAT+CGG - Chr7:94494202-94494221 None:intergenic 55.0%
TCTTACCGGAAGCTCCGGTA+GGG - Chr7:94495628-94495647 None:intergenic 55.0%
TTCTGCTACAGGGCCTGTGA+AGG - Chr7:94494142-94494161 None:intergenic 55.0%
CCTCCGGCATAAGGGCTATC+GGG - Chr7:94494201-94494220 None:intergenic 60.0%
CTCCGGCATAAGGGCTATCG+GGG - Chr7:94494200-94494219 None:intergenic 60.0%
TCCGGCATAAGGGCTATCGG+GGG - Chr7:94494199-94494218 None:intergenic 60.0%
CCCCCCGATAGCCCTTATGC+CGG + Chr7:94494195-94494214 MsG0780041729.01.T01:CDS 65.0%
CCCGATAGCCCTTATGCCGG+AGG + Chr7:94494198-94494217 MsG0780041729.01.T01:CDS 65.0%
CCGGCATAAGGGCTATCGGG+GGG - Chr7:94494198-94494217 None:intergenic 65.0%
CTGAGTCCAGCTCCGAGCAG+TGG - Chr7:94495526-94495545 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 94494102 94495892 94494102 ID=MsG0780041729.01;Name=MsG0780041729.01
Chr7 mRNA 94494102 94495892 94494102 ID=MsG0780041729.01.T01;Parent=MsG0780041729.01;Name=MsG0780041729.01.T01;_AED=0.44;_eAED=0.44;_QI=0|1|0.66|1|1|1|3|329|140
Chr7 exon 94494102 94494275 94494102 ID=MsG0780041729.01.T01:exon:20726;Parent=MsG0780041729.01.T01
Chr7 exon 94494497 94494601 94494497 ID=MsG0780041729.01.T01:exon:20727;Parent=MsG0780041729.01.T01
Chr7 exon 94495420 94495892 94495420 ID=MsG0780041729.01.T01:exon:20728;Parent=MsG0780041729.01.T01
Chr7 CDS 94494102 94494275 94494102 ID=MsG0780041729.01.T01:cds;Parent=MsG0780041729.01.T01
Chr7 CDS 94494497 94494601 94494497 ID=MsG0780041729.01.T01:cds;Parent=MsG0780041729.01.T01
Chr7 CDS 94495420 94495563 94495420 ID=MsG0780041729.01.T01:cds;Parent=MsG0780041729.01.T01
Chr7 three_prime_UTR 94495564 94495892 94495564 ID=MsG0780041729.01.T01:three_prime_utr;Parent=MsG0780041729.01.T01
Gene Sequence

>MsG0780041729.01.T01

ATGCAAAGTTTGTTTTTTTCTTGTGTTTTATCCACTACCTTCACAGGCCCTGTAGCAGAAGACATGTTTCATTGGCAAGCAACTATAATGGGTCCCCCCGATAGCCCTTATGCCGGAGGAGTTTTTCTAGTTACCATTCATTTTCCTCCTGATTATCCATTCAAGCCACCCAAGGTTGCCTTTAGGACCAAAGTTTTCCACCCAAATATCAACAGCAATGGTAGCATTTGTCTTGATATCTTGAAGGAGCAGTGGAGCCCCGCTTTGACAATATCTAAGGTGCTGTTATCCATTTGTTCCCTGTTGACGGATCCAAACCCAGATGATCCCTTAGTGCCTGAAATAGCTCATATGTACAAGACAGACAGGTCCAAGTATGAAACCACTGCTCGGAGCTGGACTCAGAAGTATGCAATGGGCTAG

Protein sequence

>MsG0780041729.01.T01

MQSLFFSCVLSTTFTGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTARSWTQKYAMG*