Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004403.01.T01 | XP_003590868.1 | 94.498 | 309 | 17 | 0 | 1 | 309 | 2 | 310 | 0 | 599 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004403.01.T01 | Q9FLU7 | 44.257 | 296 | 117 | 4 | 10 | 305 | 1 | 248 | 1.51E-78 | 242 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004403.01.T01 | G7I5J8 | 94.498 | 309 | 17 | 0 | 1 | 309 | 2 | 310 | 0.0 | 599 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000220.01 | MsG0180004403.01 | 0.808881 | 2.490396e-50 | 1.440506e-47 |
| MsG0180002489.01 | MsG0180004403.01 | 0.802342 | 5.871211e-49 | 2.869073e-46 |
| MsG0180002491.01 | MsG0180004403.01 | 0.806375 | 8.481847e-50 | 4.596261e-47 |
| MsG0180003428.01 | MsG0180004403.01 | 0.819486 | 1.132601e-52 | 8.727598e-50 |
| MsG0180003744.01 | MsG0180004403.01 | 0.803319 | 3.688842e-49 | 1.848026e-46 |
| MsG0180003864.01 | MsG0180004403.01 | 0.803971 | 2.702632e-49 | 1.376870e-46 |
| MsG0180004056.01 | MsG0180004403.01 | 0.802362 | 5.815372e-49 | 2.843343e-46 |
| MsG0180004403.01 | MsG0180004996.01 | 0.813114 | 3.014860e-51 | 1.951376e-48 |
| MsG0180004403.01 | MsG0180005813.01 | 0.824522 | 7.710784e-54 | 6.846635e-51 |
| MsG0180004403.01 | MsG0280006595.01 | 0.822342 | 2.493235e-53 | 2.081209e-50 |
| MsG0180004403.01 | MsG0280007564.01 | 0.809351 | 1.975306e-50 | 1.157138e-47 |
| MsG0180004403.01 | MsG0280008417.01 | 0.826238 | 3.027587e-54 | 2.823193e-51 |
| MsG0180004403.01 | MsG0280010531.01 | 0.805508 | 1.290291e-49 | 6.838387e-47 |
| MsG0180004403.01 | MsG0280010554.01 | 0.824481 | 7.886435e-54 | 6.993923e-51 |
| MsG0180004403.01 | MsG0380011840.01 | 0.800120 | 1.672499e-48 | 7.725011e-46 |
| MsG0180004403.01 | MsG0380016552.01 | 0.813806 | 2.124528e-51 | 1.401335e-48 |
| MsG0180004403.01 | MsG0380017039.01 | 0.804561 | 2.036044e-49 | 1.053110e-46 |
| MsG0180004403.01 | MsG0380017285.01 | 0.813501 | 2.479387e-51 | 1.621966e-48 |
| MsG0180004403.01 | MsG0480021134.01 | 0.811351 | 7.312223e-51 | 4.515623e-48 |
| MsG0180004403.01 | MsG0480021298.01 | 0.845167 | 4.806886e-59 | 7.940683e-56 |
| MsG0180004403.01 | MsG0480021464.01 | 0.841575 | 4.371654e-58 | 6.451087e-55 |
| MsG0180004403.01 | MsG0480022678.01 | 0.813545 | 2.424655e-51 | 1.588060e-48 |
| MsG0180004403.01 | MsG0580026047.01 | 0.824561 | 7.549304e-54 | 6.711018e-51 |
| MsG0180004403.01 | MsG0580026533.01 | 0.810429 | 1.157991e-50 | 6.978285e-48 |
| MsG0180004403.01 | MsG0580029658.01 | 0.800079 | 1.705361e-48 | 7.868562e-46 |
| MsG0180004403.01 | MsG0680030463.01 | 0.816197 | 6.259611e-52 | 4.406488e-49 |
| MsG0180004403.01 | MsG0680030839.01 | 0.807335 | 5.316000e-50 | 2.953045e-47 |
| MsG0180004403.01 | MsG0780039452.01 | 0.807084 | 6.006943e-50 | 3.315046e-47 |
| MsG0180004403.01 | MsG0780040411.01 | 0.801668 | 8.077951e-49 | 3.880138e-46 |
| MsG0180004403.01 | MsG0780040691.01 | 0.808809 | 2.580015e-50 | 1.489528e-47 |
| MsG0180004403.01 | MsG0780040845.01 | 0.802517 | 5.403274e-49 | 2.652030e-46 |
| MsG0180004403.01 | MsG0880045118.01 | 0.808194 | 3.492011e-50 | 1.983912e-47 |
| MsG0180004403.01 | MsG0880046047.01 | 0.806808 | 6.871413e-50 | 3.765252e-47 |
| MsG0180004403.01 | MsG0880046077.01 | 0.810042 | 1.402835e-50 | 8.369221e-48 |
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004403.01.T01 | MTR_1g079140 | 94.498 | 309 | 17 | 0 | 1 | 309 | 2 | 310 | 0.0 | 599 |
| MsG0180004403.01.T01 | MTR_1g079130 | 85.787 | 197 | 24 | 2 | 113 | 309 | 1 | 193 | 1.44e-119 | 342 |
| MsG0180004403.01.T01 | MTR_1g079370 | 49.498 | 299 | 111 | 6 | 11 | 305 | 3 | 265 | 1.48e-93 | 278 |
| MsG0180004403.01.T01 | MTR_1g079260 | 51.864 | 295 | 115 | 7 | 12 | 305 | 4 | 272 | 8.38e-93 | 277 |
| MsG0180004403.01.T01 | MTR_1g079380 | 47.157 | 299 | 124 | 5 | 11 | 308 | 3 | 268 | 3.34e-86 | 261 |
| MsG0180004403.01.T01 | MTR_1g100597 | 48.322 | 298 | 127 | 6 | 12 | 308 | 4 | 275 | 5.12e-85 | 257 |
| MsG0180004403.01.T01 | MTR_1g079460 | 47.475 | 297 | 123 | 5 | 10 | 305 | 2 | 266 | 7.16e-83 | 251 |
| MsG0180004403.01.T01 | MTR_1g079180 | 47.492 | 299 | 117 | 8 | 11 | 305 | 3 | 265 | 1.26e-81 | 248 |
| MsG0180004403.01.T01 | MTR_1g079200 | 46.980 | 298 | 119 | 6 | 11 | 305 | 3 | 264 | 2.33e-81 | 247 |
| MsG0180004403.01.T01 | MTR_1g079410 | 45.752 | 306 | 128 | 5 | 5 | 305 | 1 | 273 | 4.35e-77 | 236 |
| MsG0180004403.01.T01 | MTR_1g079850 | 44.482 | 299 | 144 | 5 | 10 | 305 | 2 | 281 | 3.75e-74 | 229 |
| MsG0180004403.01.T01 | MTR_1g079230 | 44.816 | 299 | 137 | 6 | 12 | 308 | 4 | 276 | 1.27e-72 | 225 |
| MsG0180004403.01.T01 | MTR_1g100613 | 46.743 | 261 | 118 | 4 | 28 | 288 | 5 | 244 | 3.68e-71 | 221 |
| MsG0180004403.01.T01 | MTR_1g079250 | 44.816 | 299 | 136 | 6 | 12 | 305 | 4 | 278 | 1.41e-67 | 213 |
| MsG0180004403.01.T01 | MTR_1g026510 | 42.000 | 300 | 148 | 5 | 12 | 305 | 4 | 283 | 2.10e-67 | 213 |
| MsG0180004403.01.T01 | MTR_7g112550 | 42.466 | 292 | 149 | 10 | 15 | 305 | 10 | 283 | 5.20e-67 | 211 |
| MsG0180004403.01.T01 | MTR_7g112560 | 41.438 | 292 | 134 | 5 | 15 | 306 | 4 | 258 | 3.80e-65 | 206 |
| MsG0180004403.01.T01 | MTR_1g083580 | 40.273 | 293 | 151 | 8 | 15 | 305 | 11 | 281 | 7.84e-65 | 206 |
| MsG0180004403.01.T01 | MTR_3g452600 | 40.816 | 294 | 138 | 5 | 12 | 305 | 10 | 267 | 8.68e-65 | 205 |
| MsG0180004403.01.T01 | MTR_1g079400 | 40.614 | 293 | 146 | 4 | 15 | 306 | 15 | 280 | 2.58e-64 | 204 |
| MsG0180004403.01.T01 | MTR_3g006850 | 43.131 | 313 | 151 | 10 | 12 | 308 | 17 | 318 | 6.91e-63 | 202 |
| MsG0180004403.01.T01 | MTR_4g023570 | 39.041 | 292 | 121 | 5 | 15 | 306 | 4 | 238 | 1.53e-58 | 188 |
| MsG0180004403.01.T01 | MTR_2g079100 | 39.590 | 293 | 131 | 6 | 14 | 302 | 11 | 261 | 1.88e-56 | 184 |
| MsG0180004403.01.T01 | MTR_1g079350 | 39.057 | 297 | 153 | 7 | 12 | 305 | 4 | 275 | 2.77e-55 | 181 |
| MsG0180004403.01.T01 | MTR_3g450990 | 36.129 | 310 | 146 | 7 | 12 | 305 | 10 | 283 | 1.18e-52 | 174 |
| MsG0180004403.01.T01 | MTR_1g079340 | 37.621 | 311 | 149 | 11 | 12 | 305 | 43 | 325 | 8.07e-43 | 150 |
| MsG0180004403.01.T01 | MTR_7g096300 | 39.223 | 283 | 119 | 9 | 12 | 285 | 4 | 242 | 1.80e-41 | 153 |
| MsG0180004403.01.T01 | MTR_1g078470 | 43.216 | 199 | 76 | 6 | 109 | 305 | 21 | 184 | 3.16e-39 | 136 |
| MsG0180004403.01.T01 | MTR_1g079350 | 35.965 | 228 | 114 | 7 | 12 | 222 | 4 | 216 | 5.62e-29 | 110 |
| MsG0180004403.01.T01 | MTR_1g079240 | 37.019 | 208 | 90 | 5 | 99 | 305 | 12 | 179 | 9.90e-29 | 109 |
| MsG0180004403.01.T01 | MTR_7g103380 | 26.821 | 302 | 171 | 8 | 14 | 304 | 21 | 283 | 2.96e-25 | 102 |
| MsG0180004403.01.T01 | MTR_1g101390 | 38.462 | 143 | 85 | 2 | 14 | 156 | 30 | 169 | 8.07e-24 | 99.0 |
| MsG0180004403.01.T01 | MTR_1g076870 | 39.189 | 148 | 74 | 5 | 140 | 285 | 2 | 135 | 4.47e-23 | 92.8 |
| MsG0180004403.01.T01 | MTR_4g083970 | 26.587 | 252 | 131 | 6 | 56 | 305 | 91 | 290 | 9.41e-23 | 95.9 |
| MsG0180004403.01.T01 | MTR_0002s0020 | 30.332 | 211 | 129 | 4 | 14 | 209 | 24 | 231 | 2.34e-22 | 94.7 |
| MsG0180004403.01.T01 | MTR_0113s0040 | 33.566 | 143 | 92 | 2 | 14 | 156 | 24 | 163 | 7.57e-21 | 90.5 |
| MsG0180004403.01.T01 | MTR_5g010800 | 28.910 | 211 | 135 | 7 | 9 | 208 | 14 | 220 | 5.23e-20 | 88.2 |
| MsG0180004403.01.T01 | MTR_4g102770 | 36.552 | 145 | 86 | 3 | 14 | 156 | 21 | 161 | 5.31e-19 | 85.5 |
| MsG0180004403.01.T01 | MTR_2g042540 | 42.857 | 105 | 56 | 2 | 12 | 115 | 4 | 105 | 7.83e-19 | 81.3 |
| MsG0180004403.01.T01 | MTR_7g096310 | 46.154 | 104 | 46 | 3 | 78 | 176 | 43 | 141 | 1.24e-18 | 82.0 |
| MsG0180004403.01.T01 | MTR_1g078460 | 47.191 | 89 | 41 | 2 | 12 | 99 | 67 | 150 | 8.27e-17 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004403.01.T01 | AT2G02230 | 41.935 | 310 | 156 | 7 | 12 | 305 | 32 | 333 | 8.46e-77 | 238 |
| MsG0180004403.01.T01 | AT2G02250 | 44.631 | 298 | 126 | 7 | 12 | 308 | 47 | 306 | 1.51e-76 | 236 |
| MsG0180004403.01.T01 | AT2G02360 | 41.391 | 302 | 135 | 5 | 5 | 304 | 7 | 268 | 1.05e-73 | 228 |
| MsG0180004403.01.T01 | AT2G02240 | 44.444 | 297 | 127 | 7 | 12 | 308 | 61 | 319 | 3.44e-72 | 226 |
| MsG0180004403.01.T01 | AT2G02340 | 41.806 | 299 | 137 | 6 | 11 | 304 | 35 | 301 | 2.91e-71 | 223 |
| MsG0180004403.01.T01 | AT1G09155 | 41.497 | 294 | 153 | 6 | 15 | 305 | 3 | 280 | 1.11e-66 | 211 |
| MsG0180004403.01.T01 | AT1G80110 | 41.497 | 294 | 132 | 6 | 12 | 304 | 1 | 255 | 4.34e-64 | 203 |
| MsG0180004403.01.T01 | AT1G56250 | 41.695 | 295 | 153 | 6 | 15 | 306 | 4 | 282 | 5.79e-61 | 196 |
| MsG0180004403.01.T01 | AT1G56240 | 40.956 | 293 | 154 | 6 | 15 | 304 | 4 | 280 | 1.05e-60 | 195 |
| MsG0180004403.01.T01 | AT2G02350 | 37.966 | 295 | 141 | 6 | 14 | 304 | 26 | 282 | 3.50e-54 | 179 |
| MsG0180004403.01.T01 | AT2G02320 | 36.482 | 307 | 147 | 9 | 8 | 307 | 36 | 301 | 2.06e-53 | 177 |
| MsG0180004403.01.T01 | AT2G02310 | 34.653 | 303 | 146 | 5 | 12 | 305 | 45 | 304 | 6.97e-52 | 173 |
| MsG0180004403.01.T01 | AT2G02300 | 36.364 | 308 | 136 | 9 | 5 | 305 | 27 | 281 | 4.29e-49 | 165 |
| MsG0180004403.01.T01 | AT5G24560 | 52.381 | 147 | 63 | 1 | 10 | 156 | 1 | 140 | 1.76e-48 | 160 |
| MsG0180004403.01.T01 | AT5G24560 | 52.632 | 57 | 26 | 1 | 249 | 305 | 137 | 192 | 1.68e-13 | 68.6 |
| MsG0180004403.01.T01 | AT3G53000 | 27.152 | 302 | 169 | 8 | 14 | 304 | 23 | 284 | 6.81e-27 | 107 |
| MsG0180004403.01.T01 | AT3G61060 | 37.762 | 143 | 86 | 2 | 14 | 156 | 27 | 166 | 1.53e-24 | 100 |
| MsG0180004403.01.T01 | AT3G61060 | 36.364 | 143 | 89 | 1 | 14 | 156 | 27 | 167 | 7.25e-24 | 99.0 |
| MsG0180004403.01.T01 | AT1G63090 | 33.125 | 160 | 101 | 3 | 14 | 173 | 28 | 181 | 1.30e-18 | 84.7 |
| MsG0180004403.01.T01 | AT1G12710 | 27.523 | 218 | 139 | 5 | 14 | 219 | 30 | 240 | 7.18e-17 | 79.7 |
| MsG0180004403.01.T01 | AT5G52120 | 30.921 | 152 | 98 | 3 | 12 | 158 | 21 | 170 | 1.58e-15 | 75.9 |
| MsG0180004403.01.T01 | AT1G12710 | 30.075 | 133 | 89 | 2 | 14 | 146 | 30 | 158 | 5.87e-12 | 65.9 |
Find 116 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATTTAAGTCGTGTGCTTC+TGG | 0.238126 | 1:-77524214 | MsG0180004403.01.T01:CDS |
| CAACATTAGCATCTCCATTA+AGG | 0.245836 | 1:-77523558 | MsG0180004403.01.T01:three_prime_UTR |
| TCCTCCTATTCCTGTTGATT+GGG | 0.254813 | 1:+77523527 | None:intergenic |
| CTCCTCCTATTCCTGTTGAT+TGG | 0.257299 | 1:+77523526 | None:intergenic |
| TGTTGTCAGCAATGTCATTT+AGG | 0.261853 | 1:+77523576 | None:intergenic |
| TTAACATAAAGATCCTTCTT+AGG | 0.300044 | 1:+77525297 | None:intergenic |
| TGATGTTGCCAGACTCTCTT+TGG | 0.301539 | 1:-77525442 | MsG0180004403.01.T01:CDS |
| TTGTTCAAGGAATTGAAATA+AGG | 0.305610 | 1:-77523847 | MsG0180004403.01.T01:CDS |
| TAAAACCAAGTTAACATGTT+TGG | 0.306692 | 1:-77523794 | MsG0180004403.01.T01:three_prime_UTR |
| CGAGGAGTTTGTTTATTGTA+TGG | 0.313317 | 1:-77525021 | MsG0180004403.01.T01:CDS |
| ATCAATAATTACCTTGAATC+TGG | 0.315150 | 1:+77524962 | None:intergenic |
| CGCTGAATCTGATTCCGTTT+GGG | 0.321898 | 1:-77525397 | MsG0180004403.01.T01:CDS |
| ATTGGGGTGACATCCCTTAA+TGG | 0.323188 | 1:+77523544 | None:intergenic |
| GTTCCTCGCTCCCGTACTAC+TGG | 0.324533 | 1:-77524073 | MsG0180004403.01.T01:CDS |
| TTCTTGTCAGCAAATATAAA+TGG | 0.326936 | 1:-77523292 | MsG0180004403.01.T01:three_prime_UTR |
| TTTCAACATGATTTAGTCTT+GGG | 0.347934 | 1:+77523824 | None:intergenic |
| GATGATAAGCAGGTGGATAT+AGG | 0.348560 | 1:-77523911 | MsG0180004403.01.T01:CDS |
| ACAAAATTTAAGTCTGTGTT+TGG | 0.355090 | 1:+77523712 | None:intergenic |
| CATCCATCTGCTCTCTCCTT+TGG | 0.359290 | 1:+77523974 | None:intergenic |
| GGAAGAAACATACTCTTCAT+AGG | 0.370239 | 1:+77523597 | None:intergenic |
| CCGCTGAATCTGATTCCGTT+TGG | 0.370563 | 1:-77525398 | MsG0180004403.01.T01:CDS |
| GTGTGTGTTGGTTTGAAATC+CGG | 0.378711 | 1:-77524291 | MsG0180004403.01.T01:CDS |
| TTTCAATTGGATAAAGTTGA+TGG | 0.381470 | 1:-77525067 | MsG0180004403.01.T01:CDS |
| TATGCTCCGTACAAAGTCTT+TGG | 0.387723 | 1:+77524241 | None:intergenic |
| TCTTATAGAGAATGGCAAAA+AGG | 0.392809 | 1:-77525256 | MsG0180004403.01.T01:intron |
| GTGGAATTAGAGCTTTCAAT+TGG | 0.395595 | 1:-77525080 | MsG0180004403.01.T01:intron |
| CTTTCAACATGATTTAGTCT+TGG | 0.409533 | 1:+77523823 | None:intergenic |
| ACTTTCTGTCCTTCCTAAGA+AGG | 0.410241 | 1:-77525310 | MsG0180004403.01.T01:CDS |
| CATCTAGTTGCCTTCACTGC+TGG | 0.419772 | 1:-77523767 | MsG0180004403.01.T01:three_prime_UTR |
| GGGGAGATACTCCGAGGTAT+TGG | 0.424153 | 1:-77525000 | MsG0180004403.01.T01:CDS |
| ACACTTTCTGTCGGTTCGAC+TGG | 0.424281 | 1:+77524016 | None:intergenic |
| TCACCCCAATCAACAGGAAT+AGG | 0.428104 | 1:-77523531 | MsG0180004403.01.T01:three_prime_UTR |
| TTCGTCCTCTTTCCGCATCC+AGG | 0.433202 | 1:+77524113 | None:intergenic |
| GAAGAAATGCTATATGTTAT+CGG | 0.434218 | 1:-77525044 | MsG0180004403.01.T01:CDS |
| TGGATGGTTGGAGATGGAAC+TGG | 0.446369 | 1:-77523957 | MsG0180004403.01.T01:CDS |
| TGATGAAACCAAAGAGAGTC+TGG | 0.447781 | 1:+77525434 | None:intergenic |
| TAAGGCTTCACTCACTCAAC+AGG | 0.448460 | 1:+77523322 | None:intergenic |
| AAGGGTGGTCTTGTTGTTCA+AGG | 0.455014 | 1:-77523860 | MsG0180004403.01.T01:CDS |
| GAGGAGTTTGTTTATTGTAT+GGG | 0.456794 | 1:-77525020 | MsG0180004403.01.T01:CDS |
| TGTGGAGCGAAATGTATTCC+TGG | 0.457716 | 1:-77524131 | MsG0180004403.01.T01:CDS |
| GTTGTTGTTATTGAAGAAGA+AGG | 0.459058 | 1:-77525528 | MsG0180004403.01.T01:CDS |
| GGGATGTCACCCCAATCAAC+AGG | 0.461910 | 1:-77523537 | MsG0180004403.01.T01:three_prime_UTR |
| GGTCAAAGGTGGTGGTTGGA+AGG | 0.462655 | 1:-77523879 | MsG0180004403.01.T01:CDS |
| AACATTAGCATCTCCATTAA+GGG | 0.463909 | 1:-77523557 | MsG0180004403.01.T01:three_prime_UTR |
| GAAGCCTCCATTGTCATTGC+TGG | 0.466915 | 1:-77524163 | MsG0180004403.01.T01:CDS |
| GGTTCGACTGGTGCTTCTAC+AGG | 0.471350 | 1:+77524028 | None:intergenic |
| TTCATCTTTATCATATCAGC+TGG | 0.474174 | 1:-77523387 | MsG0180004403.01.T01:three_prime_UTR |
| GCAATCCAAACATGTTAACT+TGG | 0.477603 | 1:+77523789 | None:intergenic |
| TGTGTGTTGGTTTGAAATCC+GGG | 0.478562 | 1:-77524290 | MsG0180004403.01.T01:CDS |
| AATTACCTTGAATCTGGATC+AGG | 0.480628 | 1:+77524968 | None:intergenic |
| GTCAAAGGTGGTGGTTGGAA+GGG | 0.482667 | 1:-77523878 | MsG0180004403.01.T01:CDS |
| GTTGGTTTGAAATCCGGGGC+TGG | 0.485855 | 1:-77524285 | MsG0180004403.01.T01:CDS |
| AAAGGTGGTGGTTGGAAGGG+TGG | 0.488197 | 1:-77523875 | MsG0180004403.01.T01:CDS |
| CTGAACTTGTATGTGTGTGT+TGG | 0.488534 | 1:-77524303 | MsG0180004403.01.T01:CDS |
| GGAGAGAGCAGATGGATGGT+TGG | 0.491839 | 1:-77523969 | MsG0180004403.01.T01:CDS |
| AAACCGCTTCTTATAGAGAA+TGG | 0.492385 | 1:-77525264 | MsG0180004403.01.T01:CDS |
| TATCCAAAGGAGAGAGCAGA+TGG | 0.495506 | 1:-77523977 | MsG0180004403.01.T01:CDS |
| GCGCAATAAGTCAAAACAAA+AGG | 0.498303 | 1:+77523344 | None:intergenic |
| GTTTGTGAGGTCAAAGGTGG+TGG | 0.499525 | 1:-77523887 | MsG0180004403.01.T01:CDS |
| ATGGCTGACGTTCAAATCCA+TGG | 0.500695 | 1:+77524188 | None:intergenic |
| TTATCTCCAAAGACTTTGTA+CGG | 0.508567 | 1:-77524247 | MsG0180004403.01.T01:CDS |
| CCTCCTATTCCTGTTGATTG+GGG | 0.509550 | 1:+77523528 | None:intergenic |
| TCTTTATCATATCAGCTGGC+AGG | 0.519994 | 1:-77523383 | MsG0180004403.01.T01:three_prime_UTR |
| GAGTGAATATCCCAGTAGTA+CGG | 0.521109 | 1:+77524062 | None:intergenic |
| TACGGGAGCGAGGAACAATC+TGG | 0.523651 | 1:+77524080 | None:intergenic |
| GGATGGTTGGAGATGGAACT+GGG | 0.523758 | 1:-77523956 | MsG0180004403.01.T01:CDS |
| CTGGGAGAGTTCTTCAACGA+AGG | 0.524006 | 1:-77523938 | MsG0180004403.01.T01:CDS |
| GAATTTCATGATCTACCTGA+AGG | 0.533212 | 1:-77525501 | MsG0180004403.01.T01:CDS |
| CATAAAGATCCTTCTTAGGA+AGG | 0.533612 | 1:+77525301 | None:intergenic |
| CTGTGTTTGACCAGCAGTGA+AGG | 0.535457 | 1:+77523757 | None:intergenic |
| GTGAGGTCAAAGGTGGTGGT+TGG | 0.539242 | 1:-77523883 | MsG0180004403.01.T01:CDS |
| GAGATACTCCGAGGTATTGG+AGG | 0.542088 | 1:-77524997 | MsG0180004403.01.T01:CDS |
| TTCCTCGCTCCCGTACTACT+GGG | 0.544526 | 1:-77524072 | MsG0180004403.01.T01:CDS |
| TCGTGTGCTTCTGGATCCCA+TGG | 0.545911 | 1:-77524205 | MsG0180004403.01.T01:CDS |
| TTCAATTGGATAAAGTTGAT+GGG | 0.546457 | 1:-77525066 | MsG0180004403.01.T01:CDS |
| AGGAATAGGAGGAGTGATGA+TGG | 0.547627 | 1:-77523517 | MsG0180004403.01.T01:three_prime_UTR |
| AGCAGATGGATGGTTGGAGA+TGG | 0.552106 | 1:-77523963 | MsG0180004403.01.T01:CDS |
| AGGAGTTTGTTTATTGTATG+GGG | 0.552502 | 1:-77525019 | MsG0180004403.01.T01:CDS |
| ATACTCCGAGGTATTGGAGG+TGG | 0.553518 | 1:-77524994 | MsG0180004403.01.T01:CDS |
| CGAAGGAGGAGATGATAAGC+AGG | 0.556193 | 1:-77523921 | MsG0180004403.01.T01:CDS |
| AGTGAATATCCCAGTAGTAC+GGG | 0.556344 | 1:+77524063 | None:intergenic |
| TTGCCATTCTCTATAAGAAG+CGG | 0.557636 | 1:+77525261 | None:intergenic |
| GGATTCCTGATCCAGATTCA+AGG | 0.561889 | 1:-77524973 | MsG0180004403.01.T01:intron |
| CATACAAGTTCAGCTGCCTC+AGG | 0.566765 | 1:+77524313 | None:intergenic |
| GTATTCCTGGATGCGGAAAG+AGG | 0.566850 | 1:-77524118 | MsG0180004403.01.T01:CDS |
| TGGCTGACGTTCAAATCCAT+GGG | 0.581295 | 1:+77524189 | None:intergenic |
| CCCCAATCAACAGGAATAGG+AGG | 0.587243 | 1:-77523528 | MsG0180004403.01.T01:three_prime_UTR |
| GCGAAATGTATTCCTGGATG+CGG | 0.591992 | 1:-77524125 | MsG0180004403.01.T01:CDS |
| ATAGGTGTTTGTGAGGTCAA+AGG | 0.597323 | 1:-77523893 | MsG0180004403.01.T01:CDS |
| AATTATCTCTAAATCTGATG+CGG | 0.603424 | 1:-77525346 | MsG0180004403.01.T01:CDS |
| CAAAGGAGAGAGCAGATGGA+TGG | 0.604933 | 1:-77523973 | MsG0180004403.01.T01:CDS |
| ATAATTGAGTGATAATCAGA+AGG | 0.608883 | 1:+77525363 | None:intergenic |
| TGATAGTGTTGATCCAGCCC+CGG | 0.609203 | 1:+77524272 | None:intergenic |
| GGAGAGTTCTTCAACGAAGG+AGG | 0.610295 | 1:-77523935 | MsG0180004403.01.T01:CDS |
| ATCACCTCCAGCAATGACAA+TGG | 0.618256 | 1:+77524156 | None:intergenic |
| AGATCGTCTACACTTTCTGT+CGG | 0.618327 | 1:+77524007 | None:intergenic |
| GGTGTTTGTGAGGTCAAAGG+TGG | 0.628547 | 1:-77523890 | MsG0180004403.01.T01:CDS |
| ATGACAATGGAGGCTTCACA+TGG | 0.637596 | 1:+77524169 | None:intergenic |
| GAGAGTCTGGCAACATCACG+TGG | 0.638064 | 1:+77525447 | None:intergenic |
| AAGCACACGACTTAAATACA+AGG | 0.639864 | 1:+77524218 | None:intergenic |
| ATCCCAGTAGTACGGGAGCG+AGG | 0.643143 | 1:+77524070 | None:intergenic |
| GCCTCCATTGTCATTGCTGG+AGG | 0.652619 | 1:-77524160 | MsG0180004403.01.T01:CDS |
| CGATCTGCAGAAGTATCCAA+AGG | 0.652956 | 1:-77523990 | MsG0180004403.01.T01:CDS |
| GGAATCCACCTCCAATACCT+CGG | 0.660263 | 1:+77524989 | None:intergenic |
| GGTGGATATAGGTGTTTGTG+AGG | 0.665629 | 1:-77523900 | MsG0180004403.01.T01:CDS |
| AGGAGGAGATGATAAGCAGG+TGG | 0.665872 | 1:-77523918 | MsG0180004403.01.T01:CDS |
| CCAAACGGAATCAGATTCAG+CGG | 0.667320 | 1:+77525398 | None:intergenic |
| ACCTCCAGCAATGACAATGG+AGG | 0.673224 | 1:+77524159 | None:intergenic |
| TCTGTACTCACATGAAGATG+AGG | 0.673546 | 1:+77523646 | None:intergenic |
| GTGTGTTGGTTTGAAATCCG+GGG | 0.678898 | 1:-77524289 | MsG0180004403.01.T01:CDS |
| CATTGCTGGAGGTGATACTG+TGG | 0.688260 | 1:-77524149 | MsG0180004403.01.T01:CDS |
| AACGGAATCAGATTCAGCGG+CGG | 0.691393 | 1:+77525401 | None:intergenic |
| AATGCTATATGTTATCGGCG+AGG | 0.704244 | 1:-77525039 | MsG0180004403.01.T01:CDS |
| AAACACAGACTTCAAACGTG+CGG | 0.709574 | 1:-77523742 | MsG0180004403.01.T01:three_prime_UTR |
| TTGTATGGGGAGATACTCCG+AGG | 0.719053 | 1:-77525006 | MsG0180004403.01.T01:CDS |
| TGGATGCGGAAAGAGGACGA+AGG | 0.783182 | 1:-77524111 | MsG0180004403.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACTATAAACATTTAATTA+AGG | - | Chr1:77524307-77524326 | MsG0180004403.01.T01:CDS | 10.0% |
| !!! | TGAATTATATGAAAATTTTA+TGG | + | Chr1:77523987-77524006 | None:intergenic | 10.0% |
| !! | ACAAAAAAACAAAAACAAAT+TGG | + | Chr1:77523589-77523608 | None:intergenic | 15.0% |
| !!! | AATTGATTTATTTGAACTTA+TGG | - | Chr1:77524018-77524037 | MsG0180004403.01.T01:CDS | 15.0% |
| !!! | GTGTTAATTTATATTTTTCT+TGG | - | Chr1:77523681-77523700 | MsG0180004403.01.T01:three_prime_UTR | 15.0% |
| !! | AAAAAACAAAAACAAATTGG+AGG | + | Chr1:77523586-77523605 | None:intergenic | 20.0% |
| !! | AAAGAAGAAGAAAAAAAATG+AGG | + | Chr1:77523250-77523269 | None:intergenic | 20.0% |
| !! | AAGAAGAAGAAAAAAAATGA+GGG | + | Chr1:77523249-77523268 | None:intergenic | 20.0% |
| !! | AGTAATAATGTTAGACTAAA+CGG | + | Chr1:77523632-77523651 | None:intergenic | 20.0% |
| !! | TAGATCACATTAAATTATGT+AGG | - | Chr1:77523958-77523977 | MsG0180004403.01.T01:CDS | 20.0% |
| !! | TATGAAAATAAACAGCTTAT+GGG | + | Chr1:77524127-77524146 | None:intergenic | 20.0% |
| !! | TTATGAAAATAAACAGCTTA+TGG | + | Chr1:77524128-77524147 | None:intergenic | 20.0% |
| !!! | TTTTCTTCTTCTTTTCAATA+TGG | - | Chr1:77523256-77523275 | MsG0180004403.01.T01:three_prime_UTR | 20.0% |
| ! | AATTATCTCTAAATCTGATG+CGG | - | Chr1:77523460-77523479 | MsG0180004403.01.T01:three_prime_UTR | 25.0% |
| ! | ACAAAATTTAAGTCTGTGTT+TGG | + | Chr1:77525097-77525116 | None:intergenic | 25.0% |
| ! | ATAATTGAGTGATAATCAGA+AGG | + | Chr1:77523446-77523465 | None:intergenic | 25.0% |
| ! | ATCAATAATTACCTTGAATC+TGG | + | Chr1:77523847-77523866 | None:intergenic | 25.0% |
| ! | GAAGAAATGCTATATGTTAT+CGG | - | Chr1:77523762-77523781 | MsG0180004403.01.T01:three_prime_UTR | 25.0% |
| ! | TAAAACCAAGTTAACATGTT+TGG | - | Chr1:77525012-77525031 | MsG0180004403.01.T01:CDS | 25.0% |
| ! | TAAGATCAATCAATTTAGTC+AGG | - | Chr1:77524356-77524375 | MsG0180004403.01.T01:intron | 25.0% |
| ! | TGTGATCTAATACATGAAAA+AGG | + | Chr1:77523947-77523966 | None:intergenic | 25.0% |
| ! | TTAACATAAAGATCCTTCTT+AGG | + | Chr1:77523512-77523531 | None:intergenic | 25.0% |
| ! | TTCTTGTCAGCAAATATAAA+TGG | - | Chr1:77525514-77525533 | MsG0180004403.01.T01:CDS | 25.0% |
| ! | TTGATTTATTCTTGAAGTTC+TGG | - | Chr1:77523862-77523881 | MsG0180004403.01.T01:CDS | 25.0% |
| ! | TTGTTCAAGGAATTGAAATA+AGG | - | Chr1:77524959-77524978 | MsG0180004403.01.T01:intron | 25.0% |
| ! | TTTCAATTGGATAAAGTTGA+TGG | - | Chr1:77523739-77523758 | MsG0180004403.01.T01:three_prime_UTR | 25.0% |
| !! | CATTTAATTAAGGTGTTTGA+TGG | - | Chr1:77524317-77524336 | MsG0180004403.01.T01:CDS | 25.0% |
| !! | TTCAATTGGATAAAGTTGAT+GGG | - | Chr1:77523740-77523759 | MsG0180004403.01.T01:three_prime_UTR | 25.0% |
| !! | TTTCAACATGATTTAGTCTT+GGG | + | Chr1:77524985-77525004 | None:intergenic | 25.0% |
| AACAAAAACAAATTGGAGGT+AGG | + | Chr1:77523582-77523601 | None:intergenic | 30.0% | |
| AACATTAGCATCTCCATTAA+GGG | - | Chr1:77525249-77525268 | MsG0180004403.01.T01:intron | 30.0% | |
| AGGCAAAAATTTATCCCAAA+CGG | + | Chr1:77523426-77523445 | None:intergenic | 30.0% | |
| CTTTCAACATGATTTAGTCT+TGG | + | Chr1:77524986-77525005 | None:intergenic | 30.0% | |
| TAAGATCAATCAACTTAGTC+TGG | - | Chr1:77524268-77524287 | MsG0180004403.01.T01:CDS | 30.0% | |
| TCATATAATTCACGCATGTT+TGG | - | Chr1:77523995-77524014 | MsG0180004403.01.T01:CDS | 30.0% | |
| TCTTATAGAGAATGGCAAAA+AGG | - | Chr1:77523550-77523569 | MsG0180004403.01.T01:three_prime_UTR | 30.0% | |
| TTATCTCCAAAGACTTTGTA+CGG | - | Chr1:77524559-77524578 | MsG0180004403.01.T01:intron | 30.0% | |
| TTCATCTTTATCATATCAGC+TGG | - | Chr1:77525419-77525438 | MsG0180004403.01.T01:CDS | 30.0% | |
| TTCCACATAAAACAAAACCA+CGG | + | Chr1:77523712-77523731 | None:intergenic | 30.0% | |
| ! | AGGAGTTTGTTTATTGTATG+GGG | - | Chr1:77523787-77523806 | MsG0180004403.01.T01:three_prime_UTR | 30.0% |
| ! | CTTAGATTTTGTTCAATCAC+TGG | + | Chr1:77524452-77524471 | None:intergenic | 30.0% |
| ! | GAGGAGTTTGTTTATTGTAT+GGG | - | Chr1:77523786-77523805 | MsG0180004403.01.T01:three_prime_UTR | 30.0% |
| ! | GTCACATGTCTTTTGTATTA+GGG | - | Chr1:77525115-77525134 | MsG0180004403.01.T01:intron | 30.0% |
| ! | GTTGTTGTTATTGAAGAAGA+AGG | - | Chr1:77523278-77523297 | MsG0180004403.01.T01:three_prime_UTR | 30.0% |
| ! | TATTCTAGAGATTACTTCCT+TGG | - | Chr1:77524414-77524433 | MsG0180004403.01.T01:intron | 30.0% |
| ! | TGTCACATGTCTTTTGTATT+AGG | - | Chr1:77525114-77525133 | MsG0180004403.01.T01:intron | 30.0% |
| !! | TAAGCTGTTTTCATAAGCTA+TGG | + | Chr1:77524159-77524178 | None:intergenic | 30.0% |
| !!! | TGTTTTTTTGTTGTGAGTCT+CGG | - | Chr1:77523598-77523617 | MsG0180004403.01.T01:three_prime_UTR | 30.0% |
| AAACCGCTTCTTATAGAGAA+TGG | - | Chr1:77523542-77523561 | MsG0180004403.01.T01:three_prime_UTR | 35.0% | |
| AAGCACACGACTTAAATACA+AGG | + | Chr1:77524591-77524610 | None:intergenic | 35.0% | |
| AATTACCTTGAATCTGGATC+AGG | + | Chr1:77523841-77523860 | None:intergenic | 35.0% | |
| CAACATTAGCATCTCCATTA+AGG | - | Chr1:77525248-77525267 | MsG0180004403.01.T01:intron | 35.0% | |
| CATAAAGATCCTTCTTAGGA+AGG | + | Chr1:77523508-77523527 | None:intergenic | 35.0% | |
| CTAAGCGATTCAAAAAATGC+AGG | - | Chr1:77524467-77524486 | MsG0180004403.01.T01:intron | 35.0% | |
| GAATTTCATGATCTACCTGA+AGG | - | Chr1:77523305-77523324 | MsG0180004403.01.T01:three_prime_UTR | 35.0% | |
| GCAATCCAAACATGTTAACT+TGG | + | Chr1:77525020-77525039 | None:intergenic | 35.0% | |
| GCGCAATAAGTCAAAACAAA+AGG | + | Chr1:77525465-77525484 | None:intergenic | 35.0% | |
| GGAAGAAACATACTCTTCAT+AGG | + | Chr1:77525212-77525231 | None:intergenic | 35.0% | |
| GTGGAATTAGAGCTTTCAAT+TGG | - | Chr1:77523726-77523745 | MsG0180004403.01.T01:three_prime_UTR | 35.0% | |
| TTGCCATTCTCTATAAGAAG+CGG | + | Chr1:77523548-77523567 | None:intergenic | 35.0% | |
| ! | CGAGGAGTTTGTTTATTGTA+TGG | - | Chr1:77523785-77523804 | MsG0180004403.01.T01:three_prime_UTR | 35.0% |
| ! | GCTGACAAGAATTTTGCATA+AGG | + | Chr1:77525505-77525524 | None:intergenic | 35.0% |
| ! | TATTTTTCTTGGCTAATCCG+TGG | - | Chr1:77523692-77523711 | MsG0180004403.01.T01:three_prime_UTR | 35.0% |
| ! | TGTTGTCAGCAATGTCATTT+AGG | + | Chr1:77525233-77525252 | None:intergenic | 35.0% |
| !! | ATCAAACGCATTAGTCTTCA+AGG | + | Chr1:77524389-77524408 | None:intergenic | 35.0% |
| !!! | ATCCGTGGTTTTGTTTTATG+TGG | - | Chr1:77523707-77523726 | MsG0180004403.01.T01:three_prime_UTR | 35.0% |
| !!! | GTTTTTTTGTTGTGAGTCTC+GGG | - | Chr1:77523599-77523618 | MsG0180004403.01.T01:three_prime_UTR | 35.0% |
| AAACACAGACTTCAAACGTG+CGG | - | Chr1:77525064-77525083 | MsG0180004403.01.T01:CDS | 40.0% | |
| AATGCTATATGTTATCGGCG+AGG | - | Chr1:77523767-77523786 | MsG0180004403.01.T01:three_prime_UTR | 40.0% | |
| ACTGGTCAATTTAGTGACCA+AGG | + | Chr1:77524434-77524453 | None:intergenic | 40.0% | |
| ACTTTCTGTCCTTCCTAAGA+AGG | - | Chr1:77523496-77523515 | MsG0180004403.01.T01:three_prime_UTR | 40.0% | |
| AGATCGTCTACACTTTCTGT+CGG | + | Chr1:77524802-77524821 | None:intergenic | 40.0% | |
| AGTGAATATCCCAGTAGTAC+GGG | + | Chr1:77524746-77524765 | None:intergenic | 40.0% | |
| ATAGGTGTTTGTGAGGTCAA+AGG | - | Chr1:77524913-77524932 | MsG0180004403.01.T01:intron | 40.0% | |
| CAAAAAATGCAGGTTTCCTG+AGG | - | Chr1:77524477-77524496 | MsG0180004403.01.T01:intron | 40.0% | |
| CTGAACTTGTATGTGTGTGT+TGG | - | Chr1:77524503-77524522 | MsG0180004403.01.T01:intron | 40.0% | |
| GAGTGAATATCCCAGTAGTA+CGG | + | Chr1:77524747-77524766 | None:intergenic | 40.0% | |
| GATGATAAGCAGGTGGATAT+AGG | - | Chr1:77524895-77524914 | MsG0180004403.01.T01:intron | 40.0% | |
| GTATTTAAGTCGTGTGCTTC+TGG | - | Chr1:77524592-77524611 | MsG0180004403.01.T01:intron | 40.0% | |
| TATGCTCCGTACAAAGTCTT+TGG | + | Chr1:77524568-77524587 | None:intergenic | 40.0% | |
| TCTGTACTCACATGAAGATG+AGG | + | Chr1:77525163-77525182 | None:intergenic | 40.0% | |
| TCTTTATCATATCAGCTGGC+AGG | - | Chr1:77525423-77525442 | MsG0180004403.01.T01:CDS | 40.0% | |
| TGATGAAACCAAAGAGAGTC+TGG | + | Chr1:77523375-77523394 | None:intergenic | 40.0% | |
| ! | ACGTTTTCAATGCAACCTTC+AGG | + | Chr1:77523323-77523342 | None:intergenic | 40.0% |
| ! | TCCTCCTATTCCTGTTGATT+GGG | + | Chr1:77525282-77525301 | None:intergenic | 40.0% |
| !! | GCTGTTTTCATAAGCTATGG+TGG | + | Chr1:77524156-77524175 | None:intergenic | 40.0% |
| !! | GTGTGTGTTGGTTTGAAATC+CGG | - | Chr1:77524515-77524534 | MsG0180004403.01.T01:intron | 40.0% |
| !! | TGTGTGTTGGTTTGAAATCC+GGG | - | Chr1:77524516-77524535 | MsG0180004403.01.T01:intron | 40.0% |
| AGGAATAGGAGGAGTGATGA+TGG | - | Chr1:77525289-77525308 | MsG0180004403.01.T01:CDS | 45.0% | |
| ATCACCTCCAGCAATGACAA+TGG | + | Chr1:77524653-77524672 | None:intergenic | 45.0% | |
| ATGACAATGGAGGCTTCACA+TGG | + | Chr1:77524640-77524659 | None:intergenic | 45.0% | |
| ATGGCTGACGTTCAAATCCA+TGG | + | Chr1:77524621-77524640 | None:intergenic | 45.0% | |
| ATTGGGGTGACATCCCTTAA+TGG | + | Chr1:77525265-77525284 | None:intergenic | 45.0% | |
| CCAAACGGAATCAGATTCAG+CGG | + | Chr1:77523411-77523430 | None:intergenic | 45.0% | |
| CGCTGAATCTGATTCCGTTT+GGG | - | Chr1:77523409-77523428 | MsG0180004403.01.T01:three_prime_UTR | 45.0% | |
| CTCCTCCTATTCCTGTTGAT+TGG | + | Chr1:77525283-77525302 | None:intergenic | 45.0% | |
| GCGAAATGTATTCCTGGATG+CGG | - | Chr1:77524681-77524700 | MsG0180004403.01.T01:intron | 45.0% | |
| GGATTCCTGATCCAGATTCA+AGG | - | Chr1:77523833-77523852 | MsG0180004403.01.T01:CDS | 45.0% | |
| GGTGGATATAGGTGTTTGTG+AGG | - | Chr1:77524906-77524925 | MsG0180004403.01.T01:intron | 45.0% | |
| TAAGGCTTCACTCACTCAAC+AGG | + | Chr1:77525487-77525506 | None:intergenic | 45.0% | |
| TATCCAAAGGAGAGAGCAGA+TGG | - | Chr1:77524829-77524848 | MsG0180004403.01.T01:intron | 45.0% | |
| TCACCCCAATCAACAGGAAT+AGG | - | Chr1:77525275-77525294 | MsG0180004403.01.T01:CDS | 45.0% | |
| TGATGTTGCCAGACTCTCTT+TGG | - | Chr1:77523364-77523383 | MsG0180004403.01.T01:three_prime_UTR | 45.0% | |
| TGGCTGACGTTCAAATCCAT+GGG | + | Chr1:77524620-77524639 | None:intergenic | 45.0% | |
| TGTGGAGCGAAATGTATTCC+TGG | - | Chr1:77524675-77524694 | MsG0180004403.01.T01:intron | 45.0% | |
| ! | CCTCCTATTCCTGTTGATTG+GGG | + | Chr1:77525281-77525300 | None:intergenic | 45.0% |
| !! | AAGGGTGGTCTTGTTGTTCA+AGG | - | Chr1:77524946-77524965 | MsG0180004403.01.T01:intron | 45.0% |
| !! | CGATCTGCAGAAGTATCCAA+AGG | - | Chr1:77524816-77524835 | MsG0180004403.01.T01:intron | 45.0% |
| !! | GTGTGTTGGTTTGAAATCCG+GGG | - | Chr1:77524517-77524536 | MsG0180004403.01.T01:intron | 45.0% |
| AACGGAATCAGATTCAGCGG+CGG | + | Chr1:77523408-77523427 | None:intergenic | 50.0% | |
| ACCTCCAGCAATGACAATGG+AGG | + | Chr1:77524650-77524669 | None:intergenic | 50.0% | |
| AGCAGATGGATGGTTGGAGA+TGG | - | Chr1:77524843-77524862 | MsG0180004403.01.T01:intron | 50.0% | |
| AGGAGGAGATGATAAGCAGG+TGG | - | Chr1:77524888-77524907 | MsG0180004403.01.T01:intron | 50.0% | |
| CAAAGGAGAGAGCAGATGGA+TGG | - | Chr1:77524833-77524852 | MsG0180004403.01.T01:intron | 50.0% | |
| CATACAAGTTCAGCTGCCTC+AGG | + | Chr1:77524496-77524515 | None:intergenic | 50.0% | |
| CATCCATCTGCTCTCTCCTT+TGG | + | Chr1:77524835-77524854 | None:intergenic | 50.0% | |
| CATCTAGTTGCCTTCACTGC+TGG | - | Chr1:77525039-77525058 | MsG0180004403.01.T01:CDS | 50.0% | |
| CATTGCTGGAGGTGATACTG+TGG | - | Chr1:77524657-77524676 | MsG0180004403.01.T01:intron | 50.0% | |
| CCCCAATCAACAGGAATAGG+AGG | - | Chr1:77525278-77525297 | MsG0180004403.01.T01:CDS | 50.0% | |
| CCGCTGAATCTGATTCCGTT+TGG | - | Chr1:77523408-77523427 | MsG0180004403.01.T01:three_prime_UTR | 50.0% | |
| CGAAGGAGGAGATGATAAGC+AGG | - | Chr1:77524885-77524904 | MsG0180004403.01.T01:intron | 50.0% | |
| CTGGGAGAGTTCTTCAACGA+AGG | - | Chr1:77524868-77524887 | MsG0180004403.01.T01:intron | 50.0% | |
| CTGTGTTTGACCAGCAGTGA+AGG | + | Chr1:77525052-77525071 | None:intergenic | 50.0% | |
| GAAGCCTCCATTGTCATTGC+TGG | - | Chr1:77524643-77524662 | MsG0180004403.01.T01:intron | 50.0% | |
| GGAATCCACCTCCAATACCT+CGG | + | Chr1:77523820-77523839 | None:intergenic | 50.0% | |
| GGAGAGTTCTTCAACGAAGG+AGG | - | Chr1:77524871-77524890 | MsG0180004403.01.T01:intron | 50.0% | |
| GGATGGTTGGAGATGGAACT+GGG | - | Chr1:77524850-77524869 | MsG0180004403.01.T01:intron | 50.0% | |
| GGTGTTTGTGAGGTCAAAGG+TGG | - | Chr1:77524916-77524935 | MsG0180004403.01.T01:intron | 50.0% | |
| GTATTCCTGGATGCGGAAAG+AGG | - | Chr1:77524688-77524707 | MsG0180004403.01.T01:intron | 50.0% | |
| GTTTGTGAGGTCAAAGGTGG+TGG | - | Chr1:77524919-77524938 | MsG0180004403.01.T01:intron | 50.0% | |
| TGGATGGTTGGAGATGGAAC+TGG | - | Chr1:77524849-77524868 | MsG0180004403.01.T01:intron | 50.0% | |
| TTGTATGGGGAGATACTCCG+AGG | - | Chr1:77523800-77523819 | MsG0180004403.01.T01:three_prime_UTR | 50.0% | |
| ! | GTCAAAGGTGGTGGTTGGAA+GGG | - | Chr1:77524928-77524947 | MsG0180004403.01.T01:intron | 50.0% |
| !! | ACACTTTCTGTCGGTTCGAC+TGG | + | Chr1:77524793-77524812 | None:intergenic | 50.0% |
| !! | ATACTCCGAGGTATTGGAGG+TGG | - | Chr1:77523812-77523831 | MsG0180004403.01.T01:exon | 50.0% |
| !! | GAGATACTCCGAGGTATTGG+AGG | - | Chr1:77523809-77523828 | MsG0180004403.01.T01:exon | 50.0% |
| !! | TGATAGTGTTGATCCAGCCC+CGG | + | Chr1:77524537-77524556 | None:intergenic | 50.0% |
| GAGAGTCTGGCAACATCACG+TGG | + | Chr1:77523362-77523381 | None:intergenic | 55.0% | |
| GCCTCCATTGTCATTGCTGG+AGG | - | Chr1:77524646-77524665 | MsG0180004403.01.T01:intron | 55.0% | |
| GGAGAGAGCAGATGGATGGT+TGG | - | Chr1:77524837-77524856 | MsG0180004403.01.T01:intron | 55.0% | |
| GGGATGTCACCCCAATCAAC+AGG | - | Chr1:77525269-77525288 | MsG0180004403.01.T01:CDS | 55.0% | |
| GGGGAGATACTCCGAGGTAT+TGG | - | Chr1:77523806-77523825 | MsG0180004403.01.T01:three_prime_UTR | 55.0% | |
| GGTTCGACTGGTGCTTCTAC+AGG | + | Chr1:77524781-77524800 | None:intergenic | 55.0% | |
| TACGGGAGCGAGGAACAATC+TGG | + | Chr1:77524729-77524748 | None:intergenic | 55.0% | |
| TCGTGTGCTTCTGGATCCCA+TGG | - | Chr1:77524601-77524620 | MsG0180004403.01.T01:intron | 55.0% | |
| TGGATGCGGAAAGAGGACGA+AGG | - | Chr1:77524695-77524714 | MsG0180004403.01.T01:intron | 55.0% | |
| TTCCTCGCTCCCGTACTACT+GGG | - | Chr1:77524734-77524753 | MsG0180004403.01.T01:intron | 55.0% | |
| TTCGTCCTCTTTCCGCATCC+AGG | + | Chr1:77524696-77524715 | None:intergenic | 55.0% | |
| ! | AAAGGTGGTGGTTGGAAGGG+TGG | - | Chr1:77524931-77524950 | MsG0180004403.01.T01:intron | 55.0% |
| ! | GGTCAAAGGTGGTGGTTGGA+AGG | - | Chr1:77524927-77524946 | MsG0180004403.01.T01:intron | 55.0% |
| ! | GTGAGGTCAAAGGTGGTGGT+TGG | - | Chr1:77524923-77524942 | MsG0180004403.01.T01:intron | 55.0% |
| !! | GTTGGTTTGAAATCCGGGGC+TGG | - | Chr1:77524521-77524540 | MsG0180004403.01.T01:intron | 55.0% |
| ATCCCAGTAGTACGGGAGCG+AGG | + | Chr1:77524739-77524758 | None:intergenic | 60.0% | |
| GTTCCTCGCTCCCGTACTAC+TGG | - | Chr1:77524733-77524752 | MsG0180004403.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 77523244 | 77525584 | 77523244 | ID=MsG0180004403.01;Name=MsG0180004403.01 |
| Chr1 | mRNA | 77523244 | 77525584 | 77523244 | ID=MsG0180004403.01.T01;Parent=MsG0180004403.01;Name=MsG0180004403.01.T01;_AED=0.48;_eAED=0.48;_QI=31|1|1|1|1|1|3|582|309 |
| Chr1 | exon | 77523244 | 77524339 | 77523244 | ID=MsG0180004403.01.T01:exon:45141;Parent=MsG0180004403.01.T01 |
| Chr1 | exon | 77524974 | 77525092 | 77524974 | ID=MsG0180004403.01.T01:exon:45140;Parent=MsG0180004403.01.T01 |
| Chr1 | exon | 77525257 | 77525584 | 77525257 | ID=MsG0180004403.01.T01:exon:45139;Parent=MsG0180004403.01.T01 |
| Chr1 | five_prime_UTR | 77525554 | 77525584 | 77525554 | ID=MsG0180004403.01.T01:five_prime_utr;Parent=MsG0180004403.01.T01 |
| Chr1 | CDS | 77525257 | 77525553 | 77525257 | ID=MsG0180004403.01.T01:cds;Parent=MsG0180004403.01.T01 |
| Chr1 | CDS | 77524974 | 77525092 | 77524974 | ID=MsG0180004403.01.T01:cds;Parent=MsG0180004403.01.T01 |
| Chr1 | CDS | 77523826 | 77524339 | 77523826 | ID=MsG0180004403.01.T01:cds;Parent=MsG0180004403.01.T01 |
| Chr1 | three_prime_UTR | 77523244 | 77523825 | 77523244 | ID=MsG0180004403.01.T01:three_prime_utr;Parent=MsG0180004403.01.T01 |
| Gene Sequence |
| Protein sequence |
