AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029658.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029658.01.T01 MTR_5g090420 95.390 564 17 1 1 564 1 555 0.0 1097
MsG0580029658.01.T01 MTR_3g449990 75.395 569 126 3 1 563 1 561 0.0 842
MsG0580029658.01.T01 MTR_1g069345 46.654 508 259 3 53 558 7 504 5.04e-161 469
MsG0580029658.01.T01 MTR_3g449950 56.747 289 110 5 1 282 1 281 3.07e-88 276
MsG0580029658.01.T01 MTR_1g072140 29.677 310 200 7 253 557 16 312 1.18e-38 144
MsG0580029658.01.T01 MTR_4g119620 27.358 318 206 9 253 557 16 321 2.71e-28 115
MsG0580029658.01.T01 MTR_8g092620 23.203 306 221 5 252 557 6 297 2.48e-22 98.2
MsG0580029658.01.T01 MTR_8g092620 23.026 304 220 5 252 555 13 302 4.87e-20 92.0
MsG0580029658.01.T01 MTR_1g063790 40.777 103 16 1 412 514 3 60 2.84e-19 82.4
MsG0580029658.01.T01 MTR_7g086360 22.977 309 215 10 257 556 48 342 4.12e-18 86.3
MsG0580029658.01.T01 MTR_5g016350 26.829 328 204 11 257 560 226 541 1.27e-16 83.6
MsG0580029658.01.T01 MTR_5g016350 26.230 183 112 4 257 429 411 580 8.71e-12 68.2
MsG0580029658.01.T01 MTR_5g016350 26.829 328 204 11 257 560 162 477 1.51e-16 83.2
MsG0580029658.01.T01 MTR_5g016350 26.776 183 111 5 257 429 347 516 1.75e-11 67.4
MsG0580029658.01.T01 MTR_5g016370 26.506 332 198 11 257 560 240 553 2.58e-16 82.8
MsG0580029658.01.T01 MTR_5g016370 26.230 183 112 4 257 429 423 592 5.89e-11 65.9
MsG0580029658.01.T01 MTR_1g054300 24.654 361 193 15 254 561 109 443 3.61e-15 78.6
MsG0580029658.01.T01 MTR_3g106080 30.159 126 77 1 263 388 460 574 2.47e-14 76.6
MsG0580029658.01.T01 MTR_4g095058 23.423 333 215 8 252 559 218 535 9.77e-14 74.3
MsG0580029658.01.T01 MTR_4g095058 23.423 333 215 8 252 559 216 533 1.19e-13 74.3
MsG0580029658.01.T01 MTR_5g022690 26.941 219 142 6 226 439 281 486 9.50e-13 71.2
MsG0580029658.01.T01 MTR_4g102520 20.743 323 234 8 243 557 276 584 1.74e-12 70.5
MsG0580029658.01.T01 MTR_3g052220 23.324 373 248 16 208 557 154 511 8.06e-12 68.2
MsG0580029658.01.T01 MTR_6g004040 24.260 169 115 3 250 417 87 243 2.96e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029658.01.T01 AT5G08560 59.036 581 216 6 1 569 1 571 0.0 699
MsG0580029658.01.T01 AT5G08560 59.036 581 216 6 1 569 1 571 0.0 699
MsG0580029658.01.T01 AT5G08560 59.036 581 216 6 1 569 1 571 0.0 699
MsG0580029658.01.T01 AT5G43920 47.529 526 256 6 53 567 7 523 2.20e-164 479
MsG0580029658.01.T01 AT4G02730 31.090 312 194 10 253 557 32 329 1.20e-33 131
MsG0580029658.01.T01 AT3G49660 27.302 315 208 7 251 557 11 312 1.60e-28 116
MsG0580029658.01.T01 AT2G43770 24.595 309 210 10 257 556 46 340 1.65e-22 99.8
MsG0580029658.01.T01 AT5G64730 24.183 306 218 5 252 557 6 297 5.80e-22 97.1
MsG0580029658.01.T01 AT5G56130 25.153 326 211 12 252 561 6 314 3.40e-16 80.5
MsG0580029658.01.T01 AT5G25150 33.333 126 73 1 263 388 459 573 1.26e-15 80.9
MsG0580029658.01.T01 AT5G52820 23.760 383 203 14 254 557 99 471 1.29e-15 80.1
MsG0580029658.01.T01 AT5G25150 33.333 126 73 1 263 388 459 573 1.38e-15 80.5
MsG0580029658.01.T01 AT5G67320 24.036 337 208 11 252 559 253 570 1.31e-13 74.3
MsG0580029658.01.T01 AT5G67320 28.495 186 110 5 254 429 438 610 9.82e-11 65.1
MsG0580029658.01.T01 AT5G60940 18.824 425 301 13 166 557 12 425 4.09e-13 72.0
MsG0580029658.01.T01 AT5G60940 19.497 318 241 9 252 557 19 333 6.30e-13 70.9
MsG0580029658.01.T01 AT1G10580 21.362 323 232 8 243 557 264 572 2.37e-12 70.1
MsG0580029658.01.T01 AT5G16750 30.189 159 101 6 409 563 27 179 3.09e-12 70.1
MsG0580029658.01.T01 AT2G41500 27.149 221 126 7 257 444 332 550 2.73e-11 66.6
MsG0580029658.01.T01 AT2G41500 20.482 249 184 6 315 557 253 493 3.34e-11 66.6
MsG0580029658.01.T01 AT2G41500 27.149 221 126 7 257 444 332 550 2.73e-11 66.6
MsG0580029658.01.T01 AT2G41500 20.482 249 184 6 315 557 253 493 3.34e-11 66.6
MsG0580029658.01.T01 AT1G71840 20.130 308 226 7 256 557 62 355 2.79e-11 66.2
MsG0580029658.01.T01 AT1G73720 20.455 528 366 21 61 557 5 509 5.70e-11 65.5

Find 172 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTCCAAAGATTAATTTCT+TGG 0.164363 5:-100427297 None:intergenic
CTGTTAAGATTATTAATATA+TGG 0.167131 5:+100424575 MsG0580029658.01.T01:five_prime_UTR
AAATTCTTTGAACTTCTAAA+TGG 0.177095 5:+100425032 MsG0580029658.01.T01:CDS
ATTGCTTAAGATTTCTGATT+TGG 0.225910 5:+100427111 MsG0580029658.01.T01:CDS
AACCCATTTCTTCTGTTTCA+TGG 0.245339 5:+100426864 MsG0580029658.01.T01:CDS
AAACAGAAGAAATGGGTTTC+TGG 0.247488 5:-100426859 None:intergenic
AGCCCTTACCTTGCAGTTAG+AGG 0.290376 5:+100425277 MsG0580029658.01.T01:CDS
AACAAGTACTTGATGGGAAT+TGG 0.300522 5:+100424925 MsG0580029658.01.T01:CDS
TTGAACAGCAATACTGTATT+GGG 0.302367 5:-100427175 None:intergenic
ATGACCGTACAATTCGGATA+TGG 0.302803 5:+100427912 MsG0580029658.01.T01:CDS
TCATTGGAGTAATAAGAATA+AGG 0.312398 5:+100423823 None:intergenic
TGAACCAAGAAATTAATCTT+TGG 0.323203 5:+100427293 MsG0580029658.01.T01:CDS
GCAGGGATAGTAGTAGAATT+CGG 0.341628 5:+100425108 MsG0580029658.01.T01:CDS
ATTGAACAGCAATACTGTAT+TGG 0.342346 5:-100427176 None:intergenic
AGGAGATTACTCCACTTTGC+AGG 0.342931 5:+100425090 MsG0580029658.01.T01:CDS
GAGGCACTGCCTGGTCATTC+AGG 0.344214 5:+100427830 MsG0580029658.01.T01:CDS
CAATTGCAATGATAATAAAA+AGG 0.346452 5:-100428035 None:intergenic
GGCGCTCGAGGTTTCTTATA+AGG 0.346607 5:+100427362 MsG0580029658.01.T01:CDS
GTCGGCCGCGTGTTTGATAT+TGG 0.346912 5:+100425004 MsG0580029658.01.T01:CDS
ATGATCAAACTGCAATCATC+TGG 0.349518 5:+100426526 MsG0580029658.01.T01:CDS
AGTGGGAAACATATACTTTC+TGG 0.350799 5:+100427019 MsG0580029658.01.T01:CDS
CTGGCTTAGTCTCCTGTACA+TGG 0.354065 5:+100426990 MsG0580029658.01.T01:CDS
GATTTCTGATTTGGATATAA+CGG 0.356904 5:+100427120 MsG0580029658.01.T01:CDS
ACTCCATGAAACAGAAGAAA+TGG 0.360475 5:-100426867 None:intergenic
TAAAGAGAGACGAGTTTGTT+AGG 0.364649 5:+100424796 MsG0580029658.01.T01:CDS
TGAAAAGAGGTTGGAACATC+TGG 0.366917 5:+100425247 MsG0580029658.01.T01:CDS
GAGTAATAAGAATAAGGTTT+GGG 0.369765 5:+100423829 None:intergenic
ATTTGCATGTGGGAATTAGA+TGG 0.371375 5:+100427058 MsG0580029658.01.T01:CDS
CTAACCTGTACTGTTCTAGA+TGG 0.373437 5:-100425371 None:intergenic
AATTCTTTGAACTTCTAAAT+GGG 0.379699 5:+100425033 MsG0580029658.01.T01:CDS
GTCTCTCTTTATAACCCCTT+TGG 0.381651 5:-100424784 None:intergenic
GTGAGGAGCTCTTCGTCATT+AGG 0.382343 5:-100426890 None:intergenic
CAGGGATAGTAGTAGAATTC+GGG 0.384222 5:+100425109 MsG0580029658.01.T01:CDS
TTTGAAACGTATGAAGGTTT+CGG 0.391023 5:+100424644 MsG0580029658.01.T01:CDS
CTTATAAGGTCTTGCTTTGG+TGG 0.391145 5:+100427376 MsG0580029658.01.T01:CDS
GCAGATATTGTGTTCCTTTG+AGG 0.393339 5:+100424499 MsG0580029658.01.T01:intron
CTTCTTTGTAGGTCTACATA+TGG 0.393962 5:+100427783 MsG0580029658.01.T01:intron
GGAGTAATAAGAATAAGGTT+TGG 0.402503 5:+100423828 None:intergenic
TGTTAAGATTATTAATATAT+GGG 0.403593 5:+100424576 MsG0580029658.01.T01:five_prime_UTR
GTGGAGTGGAGGAATCTATT+AGG 0.413571 5:+100426915 MsG0580029658.01.T01:CDS
TTTCTTATAAGGTCTTGCTT+TGG 0.417649 5:+100427373 MsG0580029658.01.T01:CDS
GCGCGGCTAGAGGAGGAGTC+TGG 0.418206 5:+100424864 MsG0580029658.01.T01:CDS
ATAAATTTGGAGACACTTGC+CGG 0.419366 5:-100426954 None:intergenic
GCTAACATGTGGGGATTAGC+TGG 0.424867 5:-100427878 None:intergenic
TTTACGCAACAAGTACTTGA+TGG 0.428247 5:+100424918 MsG0580029658.01.T01:CDS
AATTAGTTGGATTGTCGAAC+GGG 0.431277 5:+100424673 MsG0580029658.01.T01:CDS
TTGTACTTCCCAATGAGCTT+AGG 0.432048 5:-100427331 None:intergenic
CGTGTAAAGCATAGATTATC+TGG 0.433494 5:+100426833 MsG0580029658.01.T01:CDS
GTAGCTACATTGCGTAAGAT+TGG 0.437473 5:+100424957 MsG0580029658.01.T01:CDS
ACCGTCCGAAGGGGACGATC+AGG 0.440225 5:+100424752 MsG0580029658.01.T01:CDS
ACCTTCATACGTTTCAAAGC+TGG 0.443185 5:-100424639 None:intergenic
TACATATGGCACCGAAGCTC+AGG 0.443665 5:+100427797 MsG0580029658.01.T01:CDS
TTGCCCATTTCACAACTCAT+TGG 0.447546 5:+100425301 MsG0580029658.01.T01:CDS
TGATCCAATGAGTTGTGAAA+TGG 0.449737 5:-100425305 None:intergenic
TGACCGTACAATTCGGATAT+GGG 0.450477 5:+100427913 MsG0580029658.01.T01:CDS
GTTTCGGCGAAAGAATTAGT+TGG 0.451790 5:+100424660 MsG0580029658.01.T01:CDS
ATTAATCTTTGGAATATTGA+AGG 0.452243 5:+100427304 MsG0580029658.01.T01:CDS
ACCTTTACAATATCTTGCTT+AGG 0.458978 5:-100425161 None:intergenic
ACAAGTACTTGATGGGAATT+GGG 0.460130 5:+100424926 MsG0580029658.01.T01:CDS
GAAGGCGATCCTAAGCTCAT+TGG 0.460407 5:+100427322 MsG0580029658.01.T01:CDS
ATGGGAAAGAAGTGGAGTCT+TGG 0.463584 5:+100427077 MsG0580029658.01.T01:CDS
AAGTTCCTCCATTGCAGTAA+TGG 0.463877 5:-100427984 None:intergenic
AAGAGAGAAATGATCGGAAT+CGG 0.466798 5:-100423982 None:intergenic
AAGCCTCTAACTGCAAGGTA+AGG 0.469272 5:-100425280 None:intergenic
CTATCGGCTCTCCTGAGCTT+CGG 0.473900 5:-100427808 None:intergenic
AAGGCGATCCTAAGCTCATT+GGG 0.475240 5:+100427323 MsG0580029658.01.T01:CDS
GGAGGAATCTATTAGGCGTT+GGG 0.480100 5:+100426922 MsG0580029658.01.T01:CDS
CCAGTGATGACCGTACAATT+CGG 0.481345 5:+100427906 MsG0580029658.01.T01:CDS
ACCAGCTTTGAAACGTATGA+AGG 0.489309 5:+100424638 MsG0580029658.01.T01:CDS
TTGGGAAGTACAAAGGTCAT+AGG 0.494292 5:+100427341 MsG0580029658.01.T01:CDS
GGAATACCTTTGCACTCACC+TGG 0.496485 5:+100424885 MsG0580029658.01.T01:CDS
ACAATATCTTGCTTAGGAGA+TGG 0.500640 5:-100425155 None:intergenic
ATTTGGATATAACGGCTGAC+GGG 0.500965 5:+100427128 MsG0580029658.01.T01:CDS
TCAGGTATCATCACTGTTGG+AGG 0.502498 5:-100425227 None:intergenic
GCAAAGGCATTGTATTCGCT+TGG 0.504088 5:+100424825 MsG0580029658.01.T01:CDS
TCACTTGAGAAACTTCCAAC+AGG 0.504215 5:-100424711 None:intergenic
ATGATCGGAATCGGAGTTTG+AGG 0.506112 5:-100423973 None:intergenic
CCGAATTGTACGGTCATCAC+TGG 0.507746 5:-100427906 None:intergenic
ATCAGGTTGTCGGTTCCAAA+GGG 0.509238 5:+100424769 MsG0580029658.01.T01:CDS
AGGCGTTGGGATGTTTCTAC+CGG 0.511324 5:+100426935 MsG0580029658.01.T01:CDS
TGGAGGAATCTATTAGGCGT+TGG 0.513191 5:+100426921 MsG0580029658.01.T01:CDS
GACAACCTGATCGTCCCCTT+CGG 0.518549 5:-100424757 None:intergenic
CTCCATGAAACAGAAGAAAT+GGG 0.519066 5:-100426866 None:intergenic
GATCCAATGAGTTGTGAAAT+GGG 0.522742 5:-100425304 None:intergenic
GATCAGGTTGTCGGTTCCAA+AGG 0.527948 5:+100424768 MsG0580029658.01.T01:CDS
TTACGCAACAAGTACTTGAT+GGG 0.533338 5:+100424919 MsG0580029658.01.T01:CDS
AAGTTTCTCAAGTGACTCCA+TGG 0.534561 5:+100424719 MsG0580029658.01.T01:CDS
GAAAGTATATGTTTCCCACT+TGG 0.535435 5:-100427016 None:intergenic
GGAAGCATTGAAGACCTTGA+GGG 0.536828 5:+100425067 MsG0580029658.01.T01:CDS
GAAGGGGACGATCAGGTTGT+CGG 0.536973 5:+100424759 MsG0580029658.01.T01:CDS
ATTCTTTGAACTTCTAAATG+GGG 0.538918 5:+100425034 MsG0580029658.01.T01:CDS
AAGCTCAGGAGAGCCGATAG+AGG 0.539387 5:+100427811 MsG0580029658.01.T01:CDS
TGACAGATGACACTATTGTC+AGG 0.541344 5:+100424982 MsG0580029658.01.T01:CDS
TTTGCATGTGGGAATTAGAT+GGG 0.543867 5:+100427059 MsG0580029658.01.T01:CDS
CAGTGATGATACCTGAAAAG+AGG 0.546109 5:+100425234 MsG0580029658.01.T01:CDS
GATTATTAATATATGGGCTG+AGG 0.546954 5:+100424582 MsG0580029658.01.T01:five_prime_UTR
TTCTTTGAACTTCTAAATGG+GGG 0.550524 5:+100425035 MsG0580029658.01.T01:CDS
CTCGGCTACTACCGTCCGAA+GGG 0.555270 5:+100424742 MsG0580029658.01.T01:CDS
GATTTGGATATAACGGCTGA+CGG 0.556339 5:+100427127 MsG0580029658.01.T01:CDS
GATGATACCTGAAAAGAGGT+TGG 0.556463 5:+100425238 MsG0580029658.01.T01:CDS
GAGTGGGGCGCGGCTAGAGG+AGG 0.557951 5:+100424857 MsG0580029658.01.T01:CDS
AAAGAGTGGGGCGCGGCTAG+AGG 0.558493 5:+100424854 MsG0580029658.01.T01:CDS
GGACGGTAGTAGCCGAGCCA+TGG 0.559268 5:-100424736 None:intergenic
CCTGTACATGGTTTCCAAGT+GGG 0.561775 5:+100427002 MsG0580029658.01.T01:CDS
GGAGATTACTCCACTTTGCA+GGG 0.564765 5:+100425091 MsG0580029658.01.T01:CDS
TCGCTTGGTTATAGAAAGAG+TGG 0.565963 5:+100424840 MsG0580029658.01.T01:CDS
GAATTAGTTGGATTGTCGAA+CGG 0.567473 5:+100424672 MsG0580029658.01.T01:CDS
GAGCAAGCTTTCGTTGCAAG+TGG 0.568125 5:+100427403 MsG0580029658.01.T01:CDS
AAACACATGATGATGAGGTA+TGG 0.568303 5:+100426457 MsG0580029658.01.T01:CDS
AAGTGGAAGTGAGGATTCAC+AGG 0.569174 5:+100427420 MsG0580029658.01.T01:CDS
GAGCCGATAGAGGCACTGCC+TGG 0.571510 5:+100427821 MsG0580029658.01.T01:CDS
GTGATAAGAGCATTTGCATG+TGG 0.571565 5:+100427047 MsG0580029658.01.T01:CDS
CCCACTTGGAAACCATGTAC+AGG 0.572154 5:-100427002 None:intergenic
GCTCGGCTACTACCGTCCGA+AGG 0.572516 5:+100424741 MsG0580029658.01.T01:CDS
TGATCAAACTGCAATCATCT+GGG 0.573879 5:+100426527 MsG0580029658.01.T01:CDS
AGCCTCTAACTGCAAGGTAA+GGG 0.576761 5:-100425279 None:intergenic
TCCTAAGCAAGATATTGTAA+AGG 0.577339 5:+100425160 MsG0580029658.01.T01:CDS
GTTTGTTAGGATAATTGCAA+AGG 0.580074 5:+100424809 MsG0580029658.01.T01:CDS
ACTGGCAGAGGCTAACATGT+GGG 0.581947 5:-100427888 None:intergenic
GATACCATCTAGAACAGTAC+AGG 0.582230 5:+100425367 MsG0580029658.01.T01:CDS
TGGAGTAATCTCCTCCCTCA+AGG 0.585707 5:-100425081 None:intergenic
TCTTCTTCTAAAGAGCCTGT+TGG 0.587005 5:+100424696 MsG0580029658.01.T01:CDS
ATAAAGAAACAAAGGATGAG+AGG 0.587569 5:+100427197 MsG0580029658.01.T01:CDS
GGCATCCATTACTGCAATGG+AGG 0.591892 5:+100427979 MsG0580029658.01.T01:CDS
GGAATTAGATGGGAAAGAAG+TGG 0.592587 5:+100427069 MsG0580029658.01.T01:CDS
TTTCGTTGCAAGTGGAAGTG+AGG 0.593078 5:+100427411 MsG0580029658.01.T01:CDS
CGCTTGGTTATAGAAAGAGT+GGG 0.593369 5:+100424841 MsG0580029658.01.T01:CDS
TGTACGGTCATCACTGGCAG+AGG 0.595492 5:-100427900 None:intergenic
GCTGTTCAATAAAGAAACAA+AGG 0.597283 5:+100427189 MsG0580029658.01.T01:CDS
GACGAAGAGCTCCTCACATG+TGG 0.597893 5:+100426896 MsG0580029658.01.T01:CDS
AAAAGAAAGAGAGAAATGAT+CGG 0.598904 5:-100423988 None:intergenic
GCTCCTCACATGTGGAGTGG+AGG 0.600384 5:+100426904 MsG0580029658.01.T01:CDS
ATATTGTAAAGGTGAGATCT+CGG 0.600496 5:+100425171 MsG0580029658.01.T01:CDS
TGCCATTGCTGTGCGCATGT+TGG 0.601143 5:-100427960 None:intergenic
ACCTGATCGTCCCCTTCGGA+CGG 0.603999 5:-100424753 None:intergenic
AGGAGATGGAGACACTAAGC+AGG 0.606908 5:-100425141 None:intergenic
TCTCAAGTGACTCCATGGCT+CGG 0.607266 5:+100424724 MsG0580029658.01.T01:CDS
TTCAGATCATCATTGTGGAA+AGG 0.608588 5:+100425340 MsG0580029658.01.T01:CDS
CTTAGAAACACATGATGATG+AGG 0.609621 5:+100426452 MsG0580029658.01.T01:CDS
GAGCTGTTAATTGTGTGAGC+TGG 0.609857 5:+100427852 MsG0580029658.01.T01:CDS
TTATATTCAGATCATCATTG+TGG 0.610290 5:+100425335 MsG0580029658.01.T01:CDS
TGGAAGCATTGAAGACCTTG+AGG 0.611400 5:+100425066 MsG0580029658.01.T01:CDS
TGACCAGGCAGTGCCTCTAT+CGG 0.611974 5:-100427824 None:intergenic
AATGGCATCCATTACTGCAA+TGG 0.618205 5:+100427976 MsG0580029658.01.T01:CDS
GGCCCCATATCCGAATTGTA+CGG 0.618933 5:-100427916 None:intergenic
TGATAAGAGCATTTGCATGT+GGG 0.619083 5:+100427048 MsG0580029658.01.T01:CDS
ATCTCGGTCAAAGCTTCTAG+AGG 0.620596 5:+100425187 MsG0580029658.01.T01:CDS
AAGCTCATTGGGAAGTACAA+AGG 0.624344 5:+100427334 MsG0580029658.01.T01:CDS
GACCGTACAATTCGGATATG+GGG 0.628939 5:+100427914 MsG0580029658.01.T01:CDS
AGAGCTCCTCACATGTGGAG+TGG 0.631004 5:+100426901 MsG0580029658.01.T01:CDS
CACTGGCAGAGGCTAACATG+TGG 0.632424 5:-100427889 None:intergenic
CTGGCAGAGGCTAACATGTG+GGG 0.632842 5:-100427887 None:intergenic
TTTGGATATAACGGCTGACG+GGG 0.633962 5:+100427129 MsG0580029658.01.T01:CDS
ACAAAGGTCATAGGCGCTCG+AGG 0.635818 5:+100427350 MsG0580029658.01.T01:CDS
AAAGAAGTGGAGTCTTGGAA+AGG 0.636859 5:+100427082 MsG0580029658.01.T01:CDS
TGGGCAAGCCTCTAACTGCA+AGG 0.638184 5:-100425285 None:intergenic
TTGACACCAGGTGAGTGCAA+AGG 0.639008 5:-100424891 None:intergenic
TCCTGTACATGGTTTCCAAG+TGG 0.639029 5:+100427001 MsG0580029658.01.T01:CDS
TTAACAGCTCCTGAATGACC+AGG 0.643672 5:-100427839 None:intergenic
AGATGACACTATTGTCAGGT+CGG 0.645072 5:+100424986 MsG0580029658.01.T01:CDS
CTACTACTATCCCTGCAAAG+TGG 0.645119 5:-100425101 None:intergenic
TACCAACATGCGCACAGCAA+TGG 0.645886 5:+100427958 MsG0580029658.01.T01:CDS
ATTCCTCCACTCCACATGTG+AGG 0.658511 5:-100426907 None:intergenic
AGCATTGAAGACCTTGAGGG+AGG 0.665437 5:+100425070 MsG0580029658.01.T01:CDS
TGCGTAAACAGATTGACACC+AGG 0.666046 5:-100424903 None:intergenic
TAACTGAACAGAGAAGAAGA+AGG 0.667440 5:+100423894 MsG0580029658.01.T01:five_prime_UTR
CTGTTCCAATATCAAACACG+CGG 0.669040 5:-100425009 None:intergenic
GTTATAGAAAGAGTGGGGCG+CGG 0.677569 5:+100424847 MsG0580029658.01.T01:CDS
TCGGCTACTACCGTCCGAAG+GGG 0.678925 5:+100424743 MsG0580029658.01.T01:CDS
TCAGGTTGTCGGTTCCAAAG+GGG 0.696509 5:+100424770 MsG0580029658.01.T01:CDS
GCTTGGTTATAGAAAGAGTG+GGG 0.698893 5:+100424842 MsG0580029658.01.T01:CDS
TCAAACTGCAATCATCTGGG+AGG 0.712903 5:+100426530 MsG0580029658.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATTAAAAATAATATAGAT+AGG - Chr5:100426245-100426264 None:intergenic 10.0%
!! TGTTAAGATTATTAATATAT+GGG + Chr5:100424576-100424595 MsG0580029658.01.T01:five_prime_UTR 10.0%
!!! TTTATAGAATTTTTACTATA+AGG - Chr5:100426139-100426158 None:intergenic 10.0%
!! AAAGATTAAGATATATGAAT+CGG - Chr5:100424083-100424102 None:intergenic 15.0%
!! ATTAGATATAAAATGTAGTT+TGG + Chr5:100427619-100427638 MsG0580029658.01.T01:intron 15.0%
!! CTGTTAAGATTATTAATATA+TGG + Chr5:100424575-100424594 MsG0580029658.01.T01:five_prime_UTR 15.0%
!!! AAAGGATAATAAATTTTTGT+TGG + Chr5:100427261-100427280 MsG0580029658.01.T01:CDS 15.0%
!!! TTTGCAAAATAAAATTCTTT+TGG + Chr5:100427503-100427522 MsG0580029658.01.T01:intron 15.0%
!! AAATTCTTTGAACTTCTAAA+TGG + Chr5:100425032-100425051 MsG0580029658.01.T01:CDS 20.0%
!! AAGAAAAAGAAGTTATTGTT+TGG - Chr5:100427237-100427256 None:intergenic 20.0%
!! AATTCTTTGAACTTCTAAAT+GGG + Chr5:100425033-100425052 MsG0580029658.01.T01:CDS 20.0%
!! CAATTGCAATGATAATAAAA+AGG - Chr5:100428038-100428057 None:intergenic 20.0%
!! TATCACTTTATGTCTTATAA+GGG + Chr5:100427538-100427557 MsG0580029658.01.T01:intron 20.0%
!! TATTCCAAAGATTAATTTCT+TGG - Chr5:100427300-100427319 None:intergenic 20.0%
!! TTATCACTTTATGTCTTATA+AGG + Chr5:100427537-100427556 MsG0580029658.01.T01:intron 20.0%
!! TTTCCAAAATCTATCATAAT+TGG - Chr5:100425793-100425812 None:intergenic 20.0%
!!! AGTAAATATGGATTTTCTAA+AGG - Chr5:100427564-100427583 None:intergenic 20.0%
!!! ATGATTATCTTGATTTTAGA+TGG + Chr5:100424180-100424199 MsG0580029658.01.T01:intron 20.0%
!!! ATTAATCTTTGGAATATTGA+AGG + Chr5:100427304-100427323 MsG0580029658.01.T01:CDS 20.0%
!!! ATTTTTGGTCTTCTTTTTAA+AGG + Chr5:100426794-100426813 MsG0580029658.01.T01:CDS 20.0%
!!! GGGTTTTAGATTTTAATTTT+TGG + Chr5:100426779-100426798 MsG0580029658.01.T01:intron 20.0%
!!! TACATTTTATATCTAATCTC+AGG - Chr5:100427616-100427635 None:intergenic 20.0%
!!! TACTTTTATTCAGACTATTA+AGG - Chr5:100427940-100427959 None:intergenic 20.0%
!!! TATCCAATTATGATAGATTT+TGG + Chr5:100425787-100425806 MsG0580029658.01.T01:intron 20.0%
!!! TTATTTGTTGTTTATGTTTG+AGG + Chr5:100424292-100424311 MsG0580029658.01.T01:intron 20.0%
!!! TTGTACAATTTTCACATAAT+GGG + Chr5:100426481-100426500 MsG0580029658.01.T01:CDS 20.0%
!!! TTTGTACAATTTTCACATAA+TGG + Chr5:100426480-100426499 MsG0580029658.01.T01:CDS 20.0%
! AAAAGAAAGAGAGAAATGAT+CGG - Chr5:100423991-100424010 None:intergenic 25.0%
! AAAATTATGTTGTGATGTAC+TGG + Chr5:100425613-100425632 MsG0580029658.01.T01:intron 25.0%
! AACTAGACAAAATCTTCTAT+TGG + Chr5:100425870-100425889 MsG0580029658.01.T01:intron 25.0%
! AAGAATAGAAGTCAAACAAA+TGG - Chr5:100425447-100425466 None:intergenic 25.0%
! ATCTGAGTTCACTAAATTAA+TGG + Chr5:100425841-100425860 MsG0580029658.01.T01:intron 25.0%
! ATTATGTGGATACTAAATTG+TGG + Chr5:100425636-100425655 MsG0580029658.01.T01:intron 25.0%
! ATTCTTTGAACTTCTAAATG+GGG + Chr5:100425034-100425053 MsG0580029658.01.T01:CDS 25.0%
! ATTGCTTAAGATTTCTGATT+TGG + Chr5:100427111-100427130 MsG0580029658.01.T01:CDS 25.0%
! CTGTTATATATCATGTAATC+TGG + Chr5:100424206-100424225 MsG0580029658.01.T01:intron 25.0%
! GAAATTGCGATATTTATTGA+TGG + Chr5:100425482-100425501 MsG0580029658.01.T01:intron 25.0%
! TACAAGATATTATCCTTCAA+AGG - Chr5:100427482-100427501 None:intergenic 25.0%
! TGAACCAAGAAATTAATCTT+TGG + Chr5:100427293-100427312 MsG0580029658.01.T01:CDS 25.0%
! TGAAGGAAAAAATTACAACT+AGG - Chr5:100426658-100426677 None:intergenic 25.0%
! TGATACTCATTCATTCTATT+TGG - Chr5:100424390-100424409 None:intergenic 25.0%
! TTACAACTAGGATTTCAAAT+TGG - Chr5:100426646-100426665 None:intergenic 25.0%
! TTATATTCAGATCATCATTG+TGG + Chr5:100425335-100425354 MsG0580029658.01.T01:CDS 25.0%
!! AACTTCTTTTTCTTTGTCAA+AGG + Chr5:100427243-100427262 MsG0580029658.01.T01:CDS 25.0%
!! ATCCATATTTACTTGTTTCT+AGG + Chr5:100427571-100427590 MsG0580029658.01.T01:intron 25.0%
!!! AACCAGCTTTTTCATAAATT+TGG - Chr5:100426970-100426989 None:intergenic 25.0%
!!! GATGTTTTCGCTTTTATTTA+AGG + Chr5:100424423-100424442 MsG0580029658.01.T01:intron 25.0%
!!! GATTTCTGATTTGGATATAA+CGG + Chr5:100427120-100427139 MsG0580029658.01.T01:CDS 25.0%
!!! GTCACATTTTTTTAATACCA+GGG + Chr5:100426024-100426043 MsG0580029658.01.T01:intron 25.0%
AACCAGAAAAATCTAAATCC+CGG - Chr5:100425695-100425714 None:intergenic 30.0%
AATGGATGTGATTATTGTTG+AGG + Chr5:100425668-100425687 MsG0580029658.01.T01:intron 30.0%
ACCTTTACAATATCTTGCTT+AGG - Chr5:100425164-100425183 None:intergenic 30.0%
AGCTATATAGAAAGTAATGG+AGG - Chr5:100426376-100426395 None:intergenic 30.0%
ATAAAGAAACAAAGGATGAG+AGG + Chr5:100427197-100427216 MsG0580029658.01.T01:CDS 30.0%
ATATTGTAAAGGTGAGATCT+CGG + Chr5:100425171-100425190 MsG0580029658.01.T01:CDS 30.0%
ATCACCAACAAGTAGTTAAT+CGG - Chr5:100425768-100425787 None:intergenic 30.0%
ATTGAACAGCAATACTGTAT+TGG - Chr5:100427179-100427198 None:intergenic 30.0%
CACCTAGAAACAAGTAAATA+TGG - Chr5:100427576-100427595 None:intergenic 30.0%
CTACTATAATCAGAGATGTT+AGG - Chr5:100427712-100427731 None:intergenic 30.0%
CTCCAAATTTATGAAAAAGC+TGG + Chr5:100426965-100426984 MsG0580029658.01.T01:CDS 30.0%
GACTTCAATTTGATGAATGA+GGG - Chr5:100426208-100426227 None:intergenic 30.0%
GCAATCATTCTCAAACTTAT+TGG + Chr5:100424040-100424059 MsG0580029658.01.T01:intron 30.0%
GCATACATACTCATGTAAAT+GGG - Chr5:100426186-100426205 None:intergenic 30.0%
GCTGTTCAATAAAGAAACAA+AGG + Chr5:100427189-100427208 MsG0580029658.01.T01:CDS 30.0%
GGTTATTGAGTTCTTATTGA+AGG - Chr5:100426118-100426137 None:intergenic 30.0%
TACTTCACGAATTGAGATTT+GGG - Chr5:100425985-100426004 None:intergenic 30.0%
TCCTAAGCAAGATATTGTAA+AGG + Chr5:100425160-100425179 MsG0580029658.01.T01:CDS 30.0%
TCGAGCTATATAGAAAGTAA+TGG - Chr5:100426379-100426398 None:intergenic 30.0%
TGATTTCATTCCTTCTTTGT+AGG + Chr5:100427772-100427791 MsG0580029658.01.T01:intron 30.0%
TTACTTCACGAATTGAGATT+TGG - Chr5:100425986-100426005 None:intergenic 30.0%
TTCTTTGAACTTCTAAATGG+GGG + Chr5:100425035-100425054 MsG0580029658.01.T01:CDS 30.0%
TTGAACAGCAATACTGTATT+GGG - Chr5:100427178-100427197 None:intergenic 30.0%
TTTCTTATAAGGTCTTGCTT+TGG + Chr5:100427373-100427392 MsG0580029658.01.T01:CDS 30.0%
! ATTTATGAAAAAGCTGGTTC+TGG + Chr5:100426971-100426990 MsG0580029658.01.T01:CDS 30.0%
! GATTATTAATATATGGGCTG+AGG + Chr5:100424582-100424601 MsG0580029658.01.T01:five_prime_UTR 30.0%
! GCTATATAGAAAGTAATGGA+GGG - Chr5:100426375-100426394 None:intergenic 30.0%
! GTAACTTTTCTGTCAAAATG+TGG + Chr5:100426002-100426021 MsG0580029658.01.T01:intron 30.0%
! GTTTGTTAGGATAATTGCAA+AGG + Chr5:100424809-100424828 MsG0580029658.01.T01:CDS 30.0%
! TCTCTCTTTCTTTTGTAAGT+CGG + Chr5:100423997-100424016 MsG0580029658.01.T01:intron 30.0%
! TTTGAAACGTATGAAGGTTT+CGG + Chr5:100424644-100424663 MsG0580029658.01.T01:CDS 30.0%
!! AGTAACAAGTAGAGTATTGT+CGG - Chr5:100426076-100426095 None:intergenic 30.0%
!! TCTACTTTTGATGACAGTAA+TGG - Chr5:100428069-100428088 None:intergenic 30.0%
!! TTGGTCTTCTTTTTAAAGGT+TGG + Chr5:100426798-100426817 MsG0580029658.01.T01:CDS 30.0%
!! TTTTAAAGGTTGGCGTAAAT+GGG + Chr5:100426808-100426827 MsG0580029658.01.T01:CDS 30.0%
!! TTTTTAAAGGTTGGCGTAAA+TGG + Chr5:100426807-100426826 MsG0580029658.01.T01:CDS 30.0%
!!! CTGTTTTCATGCTTTTTTTC+TGG + Chr5:100426593-100426612 MsG0580029658.01.T01:intron 30.0%
!!! GGTCACATTTTTTTAATACC+AGG + Chr5:100426023-100426042 MsG0580029658.01.T01:intron 30.0%
AAATTGTGGCATCTTGCAAA+TGG + Chr5:100425650-100425669 MsG0580029658.01.T01:intron 35.0%
AACAAGTACTTGATGGGAAT+TGG + Chr5:100424925-100424944 MsG0580029658.01.T01:CDS 35.0%
AACCCATTTCTTCTGTTTCA+TGG + Chr5:100426864-100426883 MsG0580029658.01.T01:CDS 35.0%
AAGAGAGAAATGATCGGAAT+CGG - Chr5:100423985-100424004 None:intergenic 35.0%
AATTAGTTGGATTGTCGAAC+GGG + Chr5:100424673-100424692 MsG0580029658.01.T01:CDS 35.0%
ACAAGTACTTGATGGGAATT+GGG + Chr5:100424926-100424945 MsG0580029658.01.T01:CDS 35.0%
ACAATATCTTGCTTAGGAGA+TGG - Chr5:100425158-100425177 None:intergenic 35.0%
ACTCCATGAAACAGAAGAAA+TGG - Chr5:100426870-100426889 None:intergenic 35.0%
AGTGGGAAACATATACTTTC+TGG + Chr5:100427019-100427038 MsG0580029658.01.T01:CDS 35.0%
ATAAATTTGGAGACACTTGC+CGG - Chr5:100426957-100426976 None:intergenic 35.0%
ATACTCATGTAAATGGGCAT+GGG - Chr5:100426180-100426199 None:intergenic 35.0%
ATGATCAAACTGCAATCATC+TGG + Chr5:100426526-100426545 MsG0580029658.01.T01:CDS 35.0%
ATGTGATTATTGTTGAGGTC+CGG + Chr5:100425673-100425692 MsG0580029658.01.T01:intron 35.0%
ATTTGCATGTGGGAATTAGA+TGG + Chr5:100427058-100427077 MsG0580029658.01.T01:CDS 35.0%
CATATGTAGACCTACAAAGA+AGG - Chr5:100427785-100427804 None:intergenic 35.0%
CATTGTCCACATTTAAGCAA+TGG - Chr5:100427738-100427757 None:intergenic 35.0%
CGCTGTACTAAATAGCAAAA+GGG - Chr5:100426347-100426366 None:intergenic 35.0%
CGTGTAAAGCATAGATTATC+TGG + Chr5:100426833-100426852 MsG0580029658.01.T01:CDS 35.0%
CTCCATGAAACAGAAGAAAT+GGG - Chr5:100426869-100426888 None:intergenic 35.0%
CTTCTTTGTAGGTCTACATA+TGG + Chr5:100427783-100427802 MsG0580029658.01.T01:intron 35.0%
GAAAGAAAAACATCAAACCC+TGG - Chr5:100426044-100426063 None:intergenic 35.0%
GAATGAACACAATCCTTTGA+AGG + Chr5:100427466-100427485 MsG0580029658.01.T01:intron 35.0%
GAATTAGTTGGATTGTCGAA+CGG + Chr5:100424672-100424691 MsG0580029658.01.T01:CDS 35.0%
GATCCAATGAGTTGTGAAAT+GGG - Chr5:100425307-100425326 None:intergenic 35.0%
GCTGTGAATCTTCTTTCATT+TGG + Chr5:100427660-100427679 MsG0580029658.01.T01:intron 35.0%
GGACTTCAATTTGATGAATG+AGG - Chr5:100426209-100426228 None:intergenic 35.0%
GGCATACATACTCATGTAAA+TGG - Chr5:100426187-100426206 None:intergenic 35.0%
GTATACAATAGTCTCAGCAA+AGG - Chr5:100425550-100425569 None:intergenic 35.0%
TAACTGAACAGAGAAGAAGA+AGG + Chr5:100423894-100423913 MsG0580029658.01.T01:five_prime_UTR 35.0%
TAGTCTCCATTGCTTAAATG+TGG + Chr5:100427729-100427748 MsG0580029658.01.T01:intron 35.0%
TATTCCTTTGATGCAAAGAC+AGG - Chr5:100425718-100425737 None:intergenic 35.0%
TCACCAACAAGTAGTTAATC+GGG - Chr5:100425767-100425786 None:intergenic 35.0%
TCGCTGTACTAAATAGCAAA+AGG - Chr5:100426348-100426367 None:intergenic 35.0%
TGATCAAACTGCAATCATCT+GGG + Chr5:100426527-100426546 MsG0580029658.01.T01:CDS 35.0%
TGATCCAATGAGTTGTGAAA+TGG - Chr5:100425308-100425327 None:intergenic 35.0%
TTACGCAACAAGTACTTGAT+GGG + Chr5:100424919-100424938 MsG0580029658.01.T01:CDS 35.0%
TTCAGATCATCATTGTGGAA+AGG + Chr5:100425340-100425359 MsG0580029658.01.T01:CDS 35.0%
TTGTGATGTACTGGATTATG+TGG + Chr5:100425622-100425641 MsG0580029658.01.T01:intron 35.0%
TTTACGCAACAAGTACTTGA+TGG + Chr5:100424918-100424937 MsG0580029658.01.T01:CDS 35.0%
TTTGCATGTGGGAATTAGAT+GGG + Chr5:100427059-100427078 MsG0580029658.01.T01:CDS 35.0%
! AAACACATGATGATGAGGTA+TGG + Chr5:100426457-100426476 MsG0580029658.01.T01:CDS 35.0%
! AAACAGAAGAAATGGGTTTC+TGG - Chr5:100426862-100426881 None:intergenic 35.0%
! ACCTCTGAAAAAAACCTCAA+AGG - Chr5:100424516-100424535 None:intergenic 35.0%
! CTTAGAAACACATGATGATG+AGG + Chr5:100426452-100426471 MsG0580029658.01.T01:CDS 35.0%
! GAAAGTATATGTTTCCCACT+TGG - Chr5:100427019-100427038 None:intergenic 35.0%
! GTGCACTCACATTTAGAATA+TGG + Chr5:100426739-100426758 MsG0580029658.01.T01:intron 35.0%
! TAAAGAGAGACGAGTTTGTT+AGG + Chr5:100424796-100424815 MsG0580029658.01.T01:CDS 35.0%
! TATAGAAAGTAATGGAGGGA+AGG - Chr5:100426371-100426390 None:intergenic 35.0%
!! GTAACAAGTAGAGTATTGTC+GGG - Chr5:100426075-100426094 None:intergenic 35.0%
!! TGATAAGAGCATTTGCATGT+GGG + Chr5:100427048-100427067 MsG0580029658.01.T01:CDS 35.0%
!! TTTTGTGCATTGATGAGTGA+GGG - Chr5:100426696-100426715 None:intergenic 35.0%
!! TTTTTGTGCATTGATGAGTG+AGG - Chr5:100426697-100426716 None:intergenic 35.0%
!!! TCCTTTGAGGTTTTTTTCAG+AGG + Chr5:100424512-100424531 MsG0580029658.01.T01:five_prime_UTR 35.0%
!!! TTTTCAGGTATCATCACTGT+TGG - Chr5:100425233-100425252 None:intergenic 35.0%
AAAAATCATCCCCAAAAGCC+AGG + Chr5:100426275-100426294 MsG0580029658.01.T01:intron 40.0%
AAAATCATCCCCAAAAGCCA+GGG + Chr5:100426276-100426295 MsG0580029658.01.T01:intron 40.0%
AAAGAAGTGGAGTCTTGGAA+AGG + Chr5:100427082-100427101 MsG0580029658.01.T01:CDS 40.0%
AACAAGTAGTTAATCGGGGT+TGG - Chr5:100425762-100425781 None:intergenic 40.0%
AACCCCGATTAACTACTTGT+TGG + Chr5:100425761-100425780 MsG0580029658.01.T01:intron 40.0%
AAGTTCCTCCATTGCAGTAA+TGG - Chr5:100427987-100428006 None:intergenic 40.0%
AAGTTTCTCAAGTGACTCCA+TGG + Chr5:100424719-100424738 MsG0580029658.01.T01:CDS 40.0%
AATGGCATCCATTACTGCAA+TGG + Chr5:100427976-100427995 MsG0580029658.01.T01:CDS 40.0%
ACCTTCATACGTTTCAAAGC+TGG - Chr5:100424642-100424661 None:intergenic 40.0%
AGATCTGTCACAGTATTAGC+AGG - Chr5:100426434-100426453 None:intergenic 40.0%
AGATGACACTATTGTCAGGT+CGG + Chr5:100424986-100425005 MsG0580029658.01.T01:CDS 40.0%
ATGACCGTACAATTCGGATA+TGG + Chr5:100427912-100427931 MsG0580029658.01.T01:CDS 40.0%
ATGGCTTAACTCTGCAACAT+TGG + Chr5:100426758-100426777 MsG0580029658.01.T01:intron 40.0%
ATTTGGATATAACGGCTGAC+GGG + Chr5:100427128-100427147 MsG0580029658.01.T01:CDS 40.0%
CACCAACAAGTAGTTAATCG+GGG - Chr5:100425766-100425785 None:intergenic 40.0%
CAGGGATAGTAGTAGAATTC+GGG + Chr5:100425109-100425128 MsG0580029658.01.T01:CDS 40.0%
CAGTGATGATACCTGAAAAG+AGG + Chr5:100425234-100425253 MsG0580029658.01.T01:CDS 40.0%
CATACTCATGTAAATGGGCA+TGG - Chr5:100426181-100426200 None:intergenic 40.0%
CGCTTGGTTATAGAAAGAGT+GGG + Chr5:100424841-100424860 MsG0580029658.01.T01:CDS 40.0%
CTGTTCCAATATCAAACACG+CGG - Chr5:100425012-100425031 None:intergenic 40.0%
CTTATAAGGTCTTGCTTTGG+TGG + Chr5:100427376-100427395 MsG0580029658.01.T01:CDS 40.0%
GATGATACCTGAAAAGAGGT+TGG + Chr5:100425238-100425257 MsG0580029658.01.T01:CDS 40.0%
GATTTGGATATAACGGCTGA+CGG + Chr5:100427127-100427146 MsG0580029658.01.T01:CDS 40.0%
GCAGATATTGTGTTCCTTTG+AGG + Chr5:100424499-100424518 MsG0580029658.01.T01:intron 40.0%
GCAGGGATAGTAGTAGAATT+CGG + Chr5:100425108-100425127 MsG0580029658.01.T01:CDS 40.0%
GCTTGGTTATAGAAAGAGTG+GGG + Chr5:100424842-100424861 MsG0580029658.01.T01:CDS 40.0%
GGAATTAGATGGGAAAGAAG+TGG + Chr5:100427069-100427088 MsG0580029658.01.T01:CDS 40.0%
GTAGCTACATTGCGTAAGAT+TGG + Chr5:100424957-100424976 MsG0580029658.01.T01:CDS 40.0%
GTCTCTCTTTATAACCCCTT+TGG - Chr5:100424787-100424806 None:intergenic 40.0%
GTTTCGGCGAAAGAATTAGT+TGG + Chr5:100424660-100424679 MsG0580029658.01.T01:CDS 40.0%
TCACTTGAGAAACTTCCAAC+AGG - Chr5:100424714-100424733 None:intergenic 40.0%
TCGCTTGGTTATAGAAAGAG+TGG + Chr5:100424840-100424859 MsG0580029658.01.T01:CDS 40.0%
TCTAAATGGGGGAAAGGTTA+TGG + Chr5:100425046-100425065 MsG0580029658.01.T01:CDS 40.0%
TGAAAAGAGGTTGGAACATC+TGG + Chr5:100425247-100425266 MsG0580029658.01.T01:CDS 40.0%
TGAACTTCTAAATGGGGGAA+AGG + Chr5:100425040-100425059 MsG0580029658.01.T01:CDS 40.0%
TGACAGATGACACTATTGTC+AGG + Chr5:100424982-100425001 MsG0580029658.01.T01:CDS 40.0%
TGACCGTACAATTCGGATAT+GGG + Chr5:100427913-100427932 MsG0580029658.01.T01:CDS 40.0%
TGCGAAGAAGAAGAAGAAGA+AGG + Chr5:100423917-100423936 MsG0580029658.01.T01:five_prime_UTR 40.0%
TGGCTTAACTCTGCAACATT+GGG + Chr5:100426759-100426778 MsG0580029658.01.T01:intron 40.0%
TGTGATTATTGTTGAGGTCC+GGG + Chr5:100425674-100425693 MsG0580029658.01.T01:intron 40.0%
TTCTAGGTGTGATGTTCAGT+AGG + Chr5:100427587-100427606 MsG0580029658.01.T01:intron 40.0%
TTGCCCATTTCACAACTCAT+TGG + Chr5:100425301-100425320 MsG0580029658.01.T01:CDS 40.0%
TTGTACTTCCCAATGAGCTT+AGG - Chr5:100427334-100427353 None:intergenic 40.0%
! AAGCTCATTGGGAAGTACAA+AGG + Chr5:100427334-100427353 MsG0580029658.01.T01:CDS 40.0%
! AGATGTTCCAACCTCTTTTC+AGG - Chr5:100425248-100425267 None:intergenic 40.0%
! ATCAGAGATGTTAGGTACTG+CGG - Chr5:100427704-100427723 None:intergenic 40.0%
! CTAACCTGTACTGTTCTAGA+TGG - Chr5:100425374-100425393 None:intergenic 40.0%
! CTCTTTCTTTTGTAAGTCGG+TGG + Chr5:100424000-100424019 MsG0580029658.01.T01:intron 40.0%
! GATACCATCTAGAACAGTAC+AGG + Chr5:100425367-100425386 MsG0580029658.01.T01:CDS 40.0%
! GTCCGGGATTTAGATTTTTC+TGG + Chr5:100425690-100425709 MsG0580029658.01.T01:intron 40.0%
! TCTTCTTCTAAAGAGCCTGT+TGG + Chr5:100424696-100424715 MsG0580029658.01.T01:CDS 40.0%
! TGATGTTTTTCTTTCGCCCT+TGG + Chr5:100426049-100426068 MsG0580029658.01.T01:intron 40.0%
! TTGGGAAGTACAAAGGTCAT+AGG + Chr5:100427341-100427360 MsG0580029658.01.T01:CDS 40.0%
!! ACCAGCTTTGAAACGTATGA+AGG + Chr5:100424638-100424657 MsG0580029658.01.T01:CDS 40.0%
!! GCTGACTTGTTGATCAGTAA+CGG + Chr5:100425504-100425523 MsG0580029658.01.T01:intron 40.0%
!! GTGATAAGAGCATTTGCATG+TGG + Chr5:100427047-100427066 MsG0580029658.01.T01:CDS 40.0%
AAAGGTTCCAGTCTACAAGG+CGG - Chr5:100425532-100425551 None:intergenic 45.0%
AAGCCTCTAACTGCAAGGTA+AGG - Chr5:100425283-100425302 None:intergenic 45.0%
AAGGCGATCCTAAGCTCATT+GGG + Chr5:100427323-100427342 MsG0580029658.01.T01:CDS 45.0%
AAGTGGAAGTGAGGATTCAC+AGG + Chr5:100427420-100427439 MsG0580029658.01.T01:CDS 45.0%
AGCAAAGGTTCCAGTCTACA+AGG - Chr5:100425535-100425554 None:intergenic 45.0%
AGCCTCTAACTGCAAGGTAA+GGG - Chr5:100425282-100425301 None:intergenic 45.0%
AGGAGATTACTCCACTTTGC+AGG + Chr5:100425090-100425109 MsG0580029658.01.T01:CDS 45.0%
ATCTCGGTCAAAGCTTCTAG+AGG + Chr5:100425187-100425206 MsG0580029658.01.T01:CDS 45.0%
ATGATCGGAATCGGAGTTTG+AGG - Chr5:100423976-100423995 None:intergenic 45.0%
ATGGGAAAGAAGTGGAGTCT+TGG + Chr5:100427077-100427096 MsG0580029658.01.T01:CDS 45.0%
CCAGTGATGACCGTACAATT+CGG + Chr5:100427906-100427925 MsG0580029658.01.T01:CDS 45.0%
CCTGTACATGGTTTCCAAGT+GGG + Chr5:100427002-100427021 MsG0580029658.01.T01:CDS 45.0%
CTACTACTATCCCTGCAAAG+TGG - Chr5:100425104-100425123 None:intergenic 45.0%
GAAGTGAGGATTCACAGGTA+TGG + Chr5:100427425-100427444 MsG0580029658.01.T01:intron 45.0%
GACCGTACAATTCGGATATG+GGG + Chr5:100427914-100427933 MsG0580029658.01.T01:CDS 45.0%
GAGCTGTTAATTGTGTGAGC+TGG + Chr5:100427852-100427871 MsG0580029658.01.T01:CDS 45.0%
GGAGATTACTCCACTTTGCA+GGG + Chr5:100425091-100425110 MsG0580029658.01.T01:CDS 45.0%
GGAGGAATCTATTAGGCGTT+GGG + Chr5:100426922-100426941 MsG0580029658.01.T01:CDS 45.0%
GGCATTTGGCTGTGATTTGA+AGG - Chr5:100426675-100426694 None:intergenic 45.0%
GGGAGGAGAAAATCGAGAAA+AGG + Chr5:100426296-100426315 MsG0580029658.01.T01:intron 45.0%
GGTTCCTGTCTTTGCATCAA+AGG + Chr5:100425711-100425730 MsG0580029658.01.T01:intron 45.0%
GTGGAGTGGAGGAATCTATT+AGG + Chr5:100426915-100426934 MsG0580029658.01.T01:CDS 45.0%
TCAAACTGCAATCATCTGGG+AGG + Chr5:100426530-100426549 MsG0580029658.01.T01:CDS 45.0%
TCAGGTATCATCACTGTTGG+AGG - Chr5:100425230-100425249 None:intergenic 45.0%
TCCTGTACATGGTTTCCAAG+TGG + Chr5:100427001-100427020 MsG0580029658.01.T01:CDS 45.0%
TGCGTAAACAGATTGACACC+AGG - Chr5:100424906-100424925 None:intergenic 45.0%
TGGAGGAATCTATTAGGCGT+TGG + Chr5:100426921-100426940 MsG0580029658.01.T01:CDS 45.0%
TTAACAGCTCCTGAATGACC+AGG - Chr5:100427842-100427861 None:intergenic 45.0%
TTTCGTTGCAAGTGGAAGTG+AGG + Chr5:100427411-100427430 MsG0580029658.01.T01:CDS 45.0%
TTTGGATATAACGGCTGACG+GGG + Chr5:100427129-100427148 MsG0580029658.01.T01:CDS 45.0%
! AGATGTTAGGTACTGCGGTA+TGG - Chr5:100427699-100427718 None:intergenic 45.0%
! GGCTGAGGTGAACTTTTCAT+GGG + Chr5:100424597-100424616 MsG0580029658.01.T01:exon 45.0%
! TGAACTTTTCATGGGAGGTG+TGG + Chr5:100424605-100424624 MsG0580029658.01.T01:exon 45.0%
! TGAGGTGAACTTTTCATGGG+AGG + Chr5:100424600-100424619 MsG0580029658.01.T01:exon 45.0%
! TTTCTCGATTTTCTCCTCCC+TGG - Chr5:100426296-100426315 None:intergenic 45.0%
!! ATCAGGTTGTCGGTTCCAAA+GGG + Chr5:100424769-100424788 MsG0580029658.01.T01:CDS 45.0%
!! ATTTTCTCCTCCCTGGCTTT+TGG - Chr5:100426289-100426308 None:intergenic 45.0%
!! CATTGATGAGTGAGGGCATT+TGG - Chr5:100426689-100426708 None:intergenic 45.0%
!! GCAAAGGCATTGTATTCGCT+TGG + Chr5:100424825-100424844 MsG0580029658.01.T01:CDS 45.0%
!! GGAAGCATTGAAGACCTTGA+GGG + Chr5:100425067-100425086 MsG0580029658.01.T01:CDS 45.0%
!! TGGAAGCATTGAAGACCTTG+AGG + Chr5:100425066-100425085 MsG0580029658.01.T01:CDS 45.0%
!! TTTTCTCCTCCCTGGCTTTT+GGG - Chr5:100426288-100426307 None:intergenic 45.0%
ACTGGCAGAGGCTAACATGT+GGG - Chr5:100427891-100427910 None:intergenic 50.0%
AGCCCTTACCTTGCAGTTAG+AGG + Chr5:100425277-100425296 MsG0580029658.01.T01:CDS 50.0%
AGGAGATGGAGACACTAAGC+AGG - Chr5:100425144-100425163 None:intergenic 50.0%
ATTCCTCCACTCCACATGTG+AGG - Chr5:100426910-100426929 None:intergenic 50.0%
CCCACTTGGAAACCATGTAC+AGG - Chr5:100427005-100427024 None:intergenic 50.0%
CCGAATTGTACGGTCATCAC+TGG - Chr5:100427909-100427928 None:intergenic 50.0%
CTGGCTTAGTCTCCTGTACA+TGG + Chr5:100426990-100427009 MsG0580029658.01.T01:CDS 50.0%
GAAGGCGATCCTAAGCTCAT+TGG + Chr5:100427322-100427341 MsG0580029658.01.T01:CDS 50.0%
GAGCAAGCTTTCGTTGCAAG+TGG + Chr5:100427403-100427422 MsG0580029658.01.T01:CDS 50.0%
GGAATACCTTTGCACTCACC+TGG + Chr5:100424885-100424904 MsG0580029658.01.T01:CDS 50.0%
GGCATCCATTACTGCAATGG+AGG + Chr5:100427979-100427998 MsG0580029658.01.T01:CDS 50.0%
GGCATGGGTTTGCATCGAAA+AGG - Chr5:100426165-100426184 None:intergenic 50.0%
GGCCCCATATCCGAATTGTA+CGG - Chr5:100427919-100427938 None:intergenic 50.0%
GGCGCTCGAGGTTTCTTATA+AGG + Chr5:100427362-100427381 MsG0580029658.01.T01:CDS 50.0%
GTGAGGAGCTCTTCGTCATT+AGG - Chr5:100426893-100426912 None:intergenic 50.0%
GTTATAGAAAGAGTGGGGCG+CGG + Chr5:100424847-100424866 MsG0580029658.01.T01:CDS 50.0%
TACCAACATGCGCACAGCAA+TGG + Chr5:100427958-100427977 MsG0580029658.01.T01:CDS 50.0%
TCTCAAGTGACTCCATGGCT+CGG + Chr5:100424724-100424743 MsG0580029658.01.T01:CDS 50.0%
TGGAGTAATCTCCTCCCTCA+AGG - Chr5:100425084-100425103 None:intergenic 50.0%
TTGACACCAGGTGAGTGCAA+AGG - Chr5:100424894-100424913 None:intergenic 50.0%
! AGCATTGAAGACCTTGAGGG+AGG + Chr5:100425070-100425089 MsG0580029658.01.T01:CDS 50.0%
! GCTAACATGTGGGGATTAGC+TGG - Chr5:100427881-100427900 None:intergenic 50.0%
! GGGCTGAGGTGAACTTTTCA+TGG + Chr5:100424596-100424615 MsG0580029658.01.T01:exon 50.0%
! TACATATGGCACCGAAGCTC+AGG + Chr5:100427797-100427816 MsG0580029658.01.T01:CDS 50.0%
!! AGGCGTTGGGATGTTTCTAC+CGG + Chr5:100426935-100426954 MsG0580029658.01.T01:CDS 50.0%
!! AGTAGAGTATTGTCGGGCCA+AGG - Chr5:100426069-100426088 None:intergenic 50.0%
!! GATCAGGTTGTCGGTTCCAA+AGG + Chr5:100424768-100424787 MsG0580029658.01.T01:CDS 50.0%
!! GTAGAGTATTGTCGGGCCAA+GGG - Chr5:100426068-100426087 None:intergenic 50.0%
!! TAGATAGGAGCACTGACTCG+TGG - Chr5:100426230-100426249 None:intergenic 50.0%
!! TCAGGTTGTCGGTTCCAAAG+GGG + Chr5:100424770-100424789 MsG0580029658.01.T01:CDS 50.0%
!! TTTCTCCTCCCTGGCTTTTG+GGG - Chr5:100426287-100426306 None:intergenic 50.0%
ACAAAGGTCATAGGCGCTCG+AGG + Chr5:100427350-100427369 MsG0580029658.01.T01:CDS 55.0%
AGAGCTCCTCACATGTGGAG+TGG + Chr5:100426901-100426920 MsG0580029658.01.T01:CDS 55.0%
ATCATCCCCAAAAGCCAGGG+AGG + Chr5:100426279-100426298 MsG0580029658.01.T01:intron 55.0%
CACTGGCAGAGGCTAACATG+TGG - Chr5:100427892-100427911 None:intergenic 55.0%
CTGGCAGAGGCTAACATGTG+GGG - Chr5:100427890-100427909 None:intergenic 55.0%
GACAACCTGATCGTCCCCTT+CGG - Chr5:100424760-100424779 None:intergenic 55.0%
GACGAAGAGCTCCTCACATG+TGG + Chr5:100426896-100426915 MsG0580029658.01.T01:CDS 55.0%
GTCGGCCGCGTGTTTGATAT+TGG + Chr5:100425004-100425023 MsG0580029658.01.T01:CDS 55.0%
TGCCATTGCTGTGCGCATGT+TGG - Chr5:100427963-100427982 None:intergenic 55.0%
TGGGCAAGCCTCTAACTGCA+AGG - Chr5:100425288-100425307 None:intergenic 55.0%
TGTACGGTCATCACTGGCAG+AGG - Chr5:100427903-100427922 None:intergenic 55.0%
! GAAGGGGACGATCAGGTTGT+CGG + Chr5:100424759-100424778 MsG0580029658.01.T01:CDS 55.0%
AACGGCACCGCCTTGTAGAC+TGG + Chr5:100425522-100425541 MsG0580029658.01.T01:intron 60.0%
ACCTGATCGTCCCCTTCGGA+CGG - Chr5:100424756-100424775 None:intergenic 60.0%
CTCGGCTACTACCGTCCGAA+GGG + Chr5:100424742-100424761 MsG0580029658.01.T01:CDS 60.0%
GCTCCTCACATGTGGAGTGG+AGG + Chr5:100426904-100426923 MsG0580029658.01.T01:CDS 60.0%
TCGGCTACTACCGTCCGAAG+GGG + Chr5:100424743-100424762 MsG0580029658.01.T01:CDS 60.0%
!! GAGGCACTGCCTGGTCATTC+AGG + Chr5:100427830-100427849 MsG0580029658.01.T01:CDS 60.0%
AAAGAGTGGGGCGCGGCTAG+AGG + Chr5:100424854-100424873 MsG0580029658.01.T01:CDS 65.0%
ACCGTCCGAAGGGGACGATC+AGG + Chr5:100424752-100424771 MsG0580029658.01.T01:CDS 65.0%
GCTCGGCTACTACCGTCCGA+AGG + Chr5:100424741-100424760 MsG0580029658.01.T01:CDS 65.0%
GGACGGTAGTAGCCGAGCCA+TGG - Chr5:100424739-100424758 None:intergenic 65.0%
GCGCGGCTAGAGGAGGAGTC+TGG + Chr5:100424864-100424883 MsG0580029658.01.T01:CDS 70.0%
GAGTGGGGCGCGGCTAGAGG+AGG + Chr5:100424857-100424876 MsG0580029658.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr5 gene 100423830 100428150 100423830 ID=MsG0580029658.01;Name=MsG0580029658.01
Chr5 mRNA 100423830 100428150 100423830 ID=MsG0580029658.01.T01;Parent=MsG0580029658.01;Name=MsG0580029658.01.T01;_AED=0.43;_eAED=0.44;_QI=293|0.75|0.8|1|0.75|0.6|5|138|582
Chr5 exon 100423830 100424010 100423830 ID=MsG0580029658.01.T01:exon:26399;Parent=MsG0580029658.01.T01
Chr5 exon 100424503 100425388 100424503 ID=MsG0580029658.01.T01:exon:26400;Parent=MsG0580029658.01.T01
Chr5 exon 100426450 100426551 100426450 ID=MsG0580029658.01.T01:exon:26401;Parent=MsG0580029658.01.T01
Chr5 exon 100426788 100427441 100426788 ID=MsG0580029658.01.T01:exon:26402;Parent=MsG0580029658.01.T01
Chr5 exon 100427794 100428150 100427794 ID=MsG0580029658.01.T01:exon:26403;Parent=MsG0580029658.01.T01
Chr5 five_prime_UTR 100423830 100424010 100423830 ID=MsG0580029658.01.T01:five_prime_utr;Parent=MsG0580029658.01.T01
Chr5 five_prime_UTR 100424503 100424614 100424503 ID=MsG0580029658.01.T01:five_prime_utr;Parent=MsG0580029658.01.T01
Chr5 CDS 100424615 100425388 100424615 ID=MsG0580029658.01.T01:cds;Parent=MsG0580029658.01.T01
Chr5 CDS 100426450 100426551 100426450 ID=MsG0580029658.01.T01:cds;Parent=MsG0580029658.01.T01
Chr5 CDS 100426788 100427441 100426788 ID=MsG0580029658.01.T01:cds;Parent=MsG0580029658.01.T01
Chr5 CDS 100427794 100428012 100427794 ID=MsG0580029658.01.T01:cds;Parent=MsG0580029658.01.T01
Chr5 three_prime_UTR 100428013 100428150 100428013 ID=MsG0580029658.01.T01:three_prime_utr;Parent=MsG0580029658.01.T01
Gene Sequence

>MsG0580029658.01.T01

ATGGGAGGTGTGGACGATGAAGAACCAGCTTTGAAACGTATGAAGGTTTCGGCGAAAGAATTAGTTGGATTGTCGAACGGGTCTTCTTCTAAAGAGCCTGTTGGAAGTTTCTCAAGTGACTCCATGGCTCGGCTACTACCGTCCGAAGGGGACGATCAGGTTGTCGGTTCCAAAGGGGTTATAAAGAGAGACGAGTTTGTTAGGATAATTGCAAAGGCATTGTATTCGCTTGGTTATAGAAAGAGTGGGGCGCGGCTAGAGGAGGAGTCTGGAATACCTTTGCACTCACCTGGTGTCAATCTGTTTACGCAACAAGTACTTGATGGGAATTGGGATGAGAGTGTAGCTACATTGCGTAAGATTGGTTTGACAGATGACACTATTGTCAGGTCGGCCGCGTGTTTGATATTGGAACAGAAATTCTTTGAACTTCTAAATGGGGGAAAGGTTATGGAAGCATTGAAGACCTTGAGGGAGGAGATTACTCCACTTTGCAGGGATAGTAGTAGAATTCGGGAACTTTCGTCCTGCTTAGTGTCTCCATCTCCTAAGCAAGATATTGTAAAGGTGAGATCTCGGTCAAAGCTTCTAGAGGAATTGCAGAAACTGCTTCCTCCAACAGTGATGATACCTGAAAAGAGGTTGGAACATCTGGTTGAACAAGCCCTTACCTTGCAGTTAGAGGCTTGCCCATTTCACAACTCATTGGATCAGATGTCGTTATATTCAGATCATCATTGTGGAAAGGATCTGATACCATCTAGAACAGTACAGATCTTAGAAACACATGATGATGAGGTATGGTTTGTACAATTTTCACATAATGGGAAGTATTTAGCTTCAGCGTCAAATGATCAAACTGCAATCATCTGGGAGATTTTAATTTTTGGTCTTCTTTTTAAAGGTTGGCGTAAATGGGTGCGTGTAAAGCATAGATTATCTGGTCACCAGAAACCCATTTCTTCTGTTTCATGGAGTCCTAATGACGAAGAGCTCCTCACATGTGGAGTGGAGGAATCTATTAGGCGTTGGGATGTTTCTACCGGCAAGTGTCTCCAAATTTATGAAAAAGCTGGTTCTGGCTTAGTCTCCTGTACATGGTTTCCAAGTGGGAAACATATACTTTCTGGCGTAAGTGATAAGAGCATTTGCATGTGGGAATTAGATGGGAAAGAAGTGGAGTCTTGGAAAGGACAAAAATTGCTTAAGATTTCTGATTTGGATATAACGGCTGACGGGGAAGAGATTATAAGTATCTGTAAACCCAATACAGTATTGCTGTTCAATAAAGAAACAAAGGATGAGAGGTTTATTGAAGAGCGCCAAACAATAACTTCTTTTTCTTTGTCAAAGGATAATAAATTTTTGTTGGTTAATCTTTTGAACCAAGAAATTAATCTTTGGAATATTGAAGGCGATCCTAAGCTCATTGGGAAGTACAAAGGTCATAGGCGCTCGAGGTTTCTTATAAGGTCTTGCTTTGGTGGACTTGAGCAAGCTTTCGTTGCAAGTGGAAGTGAGGATTCACAGGTCTACATATGGCACCGAAGCTCAGGAGAGCCGATAGAGGCACTGCCTGGTCATTCAGGAGCTGTTAATTGTGTGAGCTGGAATCCAGCTAATCCCCACATGTTAGCCTCTGCCAGTGATGACCGTACAATTCGGATATGGGGCCTTAATAGTCTGAATAAAAGTACCAACATGCGCACAGCAATGGCATCCATTACTGCAATGGAGGAACTTAGATGA

Protein sequence

>MsG0580029658.01.T01

MGGVDDEEPALKRMKVSAKELVGLSNGSSSKEPVGSFSSDSMARLLPSEGDDQVVGSKGVIKRDEFVRIIAKALYSLGYRKSGARLEEESGIPLHSPGVNLFTQQVLDGNWDESVATLRKIGLTDDTIVRSAACLILEQKFFELLNGGKVMEALKTLREEITPLCRDSSRIRELSSCLVSPSPKQDIVKVRSRSKLLEELQKLLPPTVMIPEKRLEHLVEQALTLQLEACPFHNSLDQMSLYSDHHCGKDLIPSRTVQILETHDDEVWFVQFSHNGKYLASASNDQTAIIWEILIFGLLFKGWRKWVRVKHRLSGHQKPISSVSWSPNDEELLTCGVEESIRRWDVSTGKCLQIYEKAGSGLVSCTWFPSGKHILSGVSDKSICMWELDGKEVESWKGQKLLKISDLDITADGEEIISICKPNTVLLFNKETKDERFIEERQTITSFSLSKDNKFLLVNLLNQEINLWNIEGDPKLIGKYKGHRRSRFLIRSCFGGLEQAFVASGSEDSQVYIWHRSSGEPIEALPGHSGAVNCVSWNPANPHMLASASDDRTIRIWGLNSLNKSTNMRTAMASITAMEELR*