AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180002489.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002489.01.T01 MTR_5g022730 98.052 154 3 0 3 156 2 155 2.83e-110 310
MsG0180002489.01.T01 MTR_5g022710 96.104 154 6 0 3 156 2 155 2.00e-108 305
MsG0180002489.01.T01 MTR_7g021400 87.179 156 20 0 1 156 1 156 5.86e-93 266
MsG0180002489.01.T01 MTR_7g094150 86.538 156 21 0 1 156 1 156 1.64e-91 263
MsG0180002489.01.T01 MTR_7g094170 85.256 156 23 0 1 156 1 156 5.44e-90 259
MsG0180002489.01.T01 MTR_7g021380 83.333 156 26 0 1 156 1 156 4.47e-86 249
MsG0180002489.01.T01 MTR_3g110048 76.582 158 35 1 1 156 1 158 1.25e-85 248
MsG0180002489.01.T01 MTR_4g032400 78.846 156 32 1 2 156 8 163 1.45e-85 248
MsG0180002489.01.T01 MTR_7g094120 75.159 157 37 1 2 156 3 159 5.45e-84 244
MsG0180002489.01.T01 MTR_4g032450 73.885 157 40 1 1 156 19 175 6.64e-84 244
MsG0180002489.01.T01 MTR_8g056060 73.885 157 40 1 1 156 1 157 1.89e-79 232
MsG0180002489.01.T01 MTR_7g094280 72.152 158 42 2 1 156 1 158 7.06e-79 231
MsG0180002489.01.T01 MTR_5g085030 72.078 154 42 1 3 155 2 155 2.60e-77 227
MsG0180002489.01.T01 MTR_8g468480 69.677 155 46 1 3 156 2 156 5.90e-76 223
MsG0180002489.01.T01 MTR_4g032510 68.790 157 41 3 2 156 3 153 3.27e-71 211
MsG0180002489.01.T01 MTR_7g094310 68.987 158 37 3 1 156 1 148 4.30e-71 211
MsG0180002489.01.T01 MTR_4g032460 72.258 155 36 2 3 156 2 150 1.97e-70 209
MsG0180002489.01.T01 MTR_4g032500 66.667 156 45 2 2 156 3 152 1.11e-69 207
MsG0180002489.01.T01 MTR_4g033455 60.390 154 61 0 3 156 7 160 6.05e-65 196
MsG0180002489.01.T01 MTR_5g082340 66.452 155 40 2 3 156 2 145 4.01e-64 193
MsG0180002489.01.T01 MTR_4g017860 56.410 195 42 4 5 156 26 220 1.77e-63 194
MsG0180002489.01.T01 MTR_1g099870 84.314 102 14 1 57 156 2 103 7.01e-59 178
MsG0180002489.01.T01 MTR_4g021390 58.710 155 61 1 2 156 4 155 1.15e-58 179
MsG0180002489.01.T01 MTR_4g033460 60.000 140 56 0 3 142 7 146 2.52e-58 182
MsG0180002489.01.T01 MTR_4g033460 60.215 93 29 1 41 133 161 245 1.85e-30 110
MsG0180002489.01.T01 MTR_8g089730 69.919 123 20 1 34 156 1 106 2.83e-50 157
MsG0180002489.01.T01 MTR_7g094320 56.051 157 28 2 1 156 1 117 1.91e-48 152
MsG0180002489.01.T01 MTR_4g032420 61.417 127 34 3 31 156 38 150 6.28e-47 150
MsG0180002489.01.T01 MTR_7g006370 54.610 141 55 2 2 142 4 135 8.73e-44 141
MsG0180002489.01.T01 MTR_4g032470 51.370 146 27 2 12 156 32 134 1.18e-43 141
MsG0180002489.01.T01 MTR_7g094410 53.846 156 30 4 1 114 1 156 1.22e-41 137
MsG0180002489.01.T01 MTR_4g127240 66.990 103 28 4 40 140 26 124 1.97e-40 132
MsG0180002489.01.T01 MTR_4g131980 63.866 119 37 3 3 119 2 116 2.97e-40 132
MsG0180002489.01.T01 MTR_7g094360 47.093 172 38 4 1 119 1 172 8.16e-40 133
MsG0180002489.01.T01 MTR_8g056090 49.359 156 46 6 1 154 1 125 6.41e-37 124
MsG0180002489.01.T01 MTR_4g119422 48.980 147 68 2 2 146 227 368 2.81e-35 125
MsG0180002489.01.T01 MTR_1g112590 39.355 155 78 2 8 146 1 155 1.66e-32 113
MsG0180002489.01.T01 MTR_7g071200 71.014 69 19 1 89 156 4 72 1.20e-28 100
MsG0180002489.01.T01 MTR_2g066010 41.722 151 76 5 8 155 20 161 3.12e-27 101
MsG0180002489.01.T01 MTR_4g032520 44.444 144 38 4 29 154 1 120 3.52e-27 99.4
MsG0180002489.01.T01 MTR_2g065720 39.873 158 83 5 1 155 30 178 2.91e-26 99.0
MsG0180002489.01.T01 MTR_7g094350 50.459 109 32 2 1 109 1 87 3.03e-25 95.9
MsG0180002489.01.T01 MTR_7g094350 51.685 89 39 3 48 135 102 187 7.57e-20 82.0
MsG0180002489.01.T01 MTR_5g096950 37.736 159 78 4 1 155 1 142 1.76e-23 90.1
MsG0180002489.01.T01 MTR_4g032540 65.079 63 21 1 90 151 70 132 4.01e-23 88.6
MsG0180002489.01.T01 MTR_2g018980 34.667 150 85 3 8 156 3 140 2.76e-22 87.0
MsG0180002489.01.T01 MTR_1g042510 35.256 156 63 4 8 146 1 135 4.05e-22 89.7
MsG0180002489.01.T01 MTR_1g112570 36.691 139 63 4 8 128 1 132 1.20e-20 85.9
MsG0180002489.01.T01 MTR_5g078680 32.051 156 68 3 8 146 1 135 2.28e-19 82.0
MsG0180002489.01.T01 MTR_6g053620 36.806 144 81 5 8 146 17 155 3.57e-19 82.8
MsG0180002489.01.T01 MTR_6g053620 36.806 144 81 5 8 146 17 155 3.96e-19 82.8
MsG0180002489.01.T01 MTR_8g007195 34.286 140 80 4 10 143 13 146 2.30e-18 80.1
MsG0180002489.01.T01 MTR_7g077810 34.722 144 84 4 8 146 18 156 8.01e-18 79.0
MsG0180002489.01.T01 MTR_2g100825 32.667 150 92 4 1 146 4 148 5.19e-17 76.3
MsG0180002489.01.T01 MTR_2g100830 33.793 145 80 5 10 146 13 149 7.65e-17 75.9
MsG0180002489.01.T01 MTR_8g007185 32.877 146 87 4 8 147 11 151 8.36e-17 75.5
MsG0180002489.01.T01 MTR_8g007205 32.877 146 87 4 8 147 11 151 1.30e-16 75.1
MsG0180002489.01.T01 MTR_7g036780 34.043 141 82 6 1 135 1 136 2.03e-15 71.2
MsG0180002489.01.T01 MTR_4g131910 39.286 112 58 2 5 112 133 238 1.18e-14 69.3
MsG0180002489.01.T01 MTR_8g030670 30.345 145 91 3 10 149 20 159 2.03e-14 69.7
MsG0180002489.01.T01 MTR_3g061700 33.684 95 56 2 53 146 1 89 2.03e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002489.01.T01 AT5G42190 77.059 170 23 1 3 156 2 171 2.53e-85 248
MsG0180002489.01.T01 AT1G20140 72.393 163 38 2 1 156 1 163 3.77e-83 242
MsG0180002489.01.T01 AT1G75950 77.987 159 29 1 4 156 2 160 3.89e-83 242
MsG0180002489.01.T01 AT2G25700 68.712 163 44 2 1 156 1 163 1.92e-78 230
MsG0180002489.01.T01 AT4G34210 70.130 154 42 2 4 156 2 152 1.85e-76 224
MsG0180002489.01.T01 AT4G34470 69.481 154 43 2 4 156 2 152 1.15e-75 223
MsG0180002489.01.T01 AT3G21860 67.097 155 45 3 4 156 2 152 5.05e-68 203
MsG0180002489.01.T01 AT3G21850 64.516 155 50 3 4 156 2 153 7.30e-67 200
MsG0180002489.01.T01 AT3G60010 64.331 157 47 3 5 156 2 154 2.18e-66 199
MsG0180002489.01.T01 AT2G03170 62.338 154 51 2 4 156 2 149 2.36e-63 191
MsG0180002489.01.T01 AT2G03190 55.422 166 61 3 4 156 2 167 7.51e-59 181
MsG0180002489.01.T01 AT3G60020 57.692 156 54 3 7 156 4 153 5.80e-57 175
MsG0180002489.01.T01 AT3G21830 56.494 154 63 2 4 156 2 152 1.08e-55 172
MsG0180002489.01.T01 AT2G03160 48.677 189 61 3 4 156 2 190 1.09e-55 174
MsG0180002489.01.T01 AT2G20160 54.902 153 63 2 4 155 2 149 2.15e-53 166
MsG0180002489.01.T01 AT3G25650 57.229 166 58 5 4 156 2 167 3.19e-53 167
MsG0180002489.01.T01 AT1G10230 56.774 155 64 2 4 155 2 156 4.94e-52 163
MsG0180002489.01.T01 AT3G21840 58.333 120 44 3 4 121 2 117 1.78e-37 125
MsG0180002489.01.T01 AT3G53060 66.279 86 22 3 29 113 1 80 8.53e-32 109
MsG0180002489.01.T01 AT3G61415 33.333 144 86 4 8 146 18 156 2.54e-16 74.7
MsG0180002489.01.T01 AT3G61415 33.333 144 86 4 8 146 18 156 2.64e-16 74.7
MsG0180002489.01.T01 AT2G45950 31.944 144 88 4 8 146 18 156 3.80e-16 74.3
MsG0180002489.01.T01 AT2G45950 31.944 144 88 4 8 146 18 156 3.80e-16 74.3
MsG0180002489.01.T01 AT2G45950 31.944 144 88 4 8 146 18 156 3.89e-16 74.3
MsG0180002489.01.T01 AT2G45950 31.944 144 88 4 8 146 18 156 3.89e-16 74.3
MsG0180002489.01.T01 AT2G45950 31.944 144 88 4 8 146 18 156 3.89e-16 74.3

Find 54 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAGGGTTTCGTTGAAAAT+TGG 0.177998 1:-39032877 None:intergenic
CTAAGTACTTGTTTATCTTT+TGG 0.200183 1:+39034910 MsG0180002489.01.T01:three_prime_UTR
AATCGTGATGTGATTGATTA+GGG 0.299199 1:-39032893 None:intergenic
AAGTTACTCGCTGTTAAAAT+TGG 0.311029 1:+39035111 MsG0180002489.01.T01:three_prime_UTR
TAATCGTGATGTGATTGATT+AGG 0.314442 1:-39032894 None:intergenic
CTTGAATATCAAGAGCTTGC+TGG 0.358298 1:+39034661 MsG0180002489.01.T01:CDS
GGTCGATGAAGCGGTTGCTT+TGG 0.364221 1:+39032975 MsG0180002489.01.T01:CDS
GACTTAAGCTCATCCTCGTT+TGG 0.386875 1:-39033138 None:intergenic
CAACGTTACCAGCAAGATCT+TGG 0.386921 1:+39033059 MsG0180002489.01.T01:CDS
CGAGGATGAGCTTAAGTCTT+GGG 0.419753 1:+39033143 MsG0180002489.01.T01:CDS
CGAGTTCGTCAAGGTTGATC+AGG 0.435035 1:+39033170 MsG0180002489.01.T01:CDS
CACCTTCGCCAAGATCTTGC+TGG 0.436666 1:-39033067 None:intergenic
AATGTCTTGCGGATCTCCTC+TGG 0.448832 1:-39034728 None:intergenic
TGATCATGTCTGCAACAGTC+TGG 0.461006 1:-39034694 None:intergenic
AAGATCTTGCTGGTAACGTT+GGG 0.477857 1:-39033057 None:intergenic
TTAAAATTGGTACTAACAAA+GGG 0.479237 1:+39035124 MsG0180002489.01.T01:three_prime_UTR
GATGAGCTAATGCGTTGGTT+TGG 0.479992 1:+39035041 MsG0180002489.01.T01:three_prime_UTR
GTTAAAATTGGTACTAACAA+AGG 0.489344 1:+39035123 MsG0180002489.01.T01:three_prime_UTR
CATGTCTGCAACAGTCTGGC+AGG 0.496105 1:-39034690 None:intergenic
GAGTGTTGACTATGTTTCAC+TGG 0.496791 1:+39034946 MsG0180002489.01.T01:three_prime_UTR
TGATTTCTCACCTGAGGAAG+AGG 0.505723 1:+39034763 MsG0180002489.01.T01:CDS
TGCTGGTAACGTTGGGAAGA+GGG 0.508109 1:-39033050 None:intergenic
TAATGCGTTGGTTTGGCATG+AGG 0.522803 1:+39035048 MsG0180002489.01.T01:three_prime_UTR
TTGCTGGTAACGTTGGGAAG+AGG 0.523250 1:-39033051 None:intergenic
CAAGATCTTGCTGGTAACGT+TGG 0.530853 1:-39033058 None:intergenic
CGAACTTCCTCCTCTTCCTC+AGG 0.533819 1:-39034773 None:intergenic
AACTATCGGCGTGACTCGTG+AGG 0.534389 1:-39032773 None:intergenic
GACTGTTGCAGACATGATCA+AGG 0.534990 1:+39034697 MsG0180002489.01.T01:CDS
ACTATCGGCGTGACTCGTGA+GGG 0.543385 1:-39032772 None:intergenic
CTGATCAACCTTGACGAACT+CGG 0.543997 1:-39033169 None:intergenic
AGCATCATTCAAATGCCCAT+TGG 0.546088 1:-39034805 None:intergenic
ACGAGGATGAGCTTAAGTCT+TGG 0.546572 1:+39033142 MsG0180002489.01.T01:CDS
AGGAAGAGGAGGAAGTTCGT+AGG 0.548370 1:+39034777 MsG0180002489.01.T01:CDS
GGAAGAGGAGGAAGTTCGTA+GGG 0.553401 1:+39034778 MsG0180002489.01.T01:CDS
AATGCGTTGGTTTGGCATGA+GGG 0.555569 1:+39035049 MsG0180002489.01.T01:three_prime_UTR
AGTTCGTAGGGAAAACCAAT+GGG 0.562143 1:+39034790 MsG0180002489.01.T01:CDS
AAGTTCGTAGGGAAAACCAA+TGG 0.564773 1:+39034789 MsG0180002489.01.T01:CDS
GAATGAACGTGTAAAACTAT+CGG 0.569363 1:-39032787 None:intergenic
GACTTTCGAGGTCGATGAAG+CGG 0.579785 1:+39032966 MsG0180002489.01.T01:CDS
TCTTGATGTTGAATGTCTTG+CGG 0.592623 1:-39034739 None:intergenic
TTCCGACGGTGAGACTTTCG+AGG 0.598330 1:+39032954 MsG0180002489.01.T01:CDS
TTGGGATTCCGAGTTCGTCA+AGG 0.598524 1:+39033161 MsG0180002489.01.T01:CDS
ATCACTCTCAAGAGTTCCGA+CGG 0.604938 1:+39032940 MsG0180002489.01.T01:CDS
GAAGATGATTGCGCTGACAG+TGG 0.607194 1:+39033024 MsG0180002489.01.T01:CDS
TACCAGCAAGATCTTGGCGA+AGG 0.627734 1:+39033065 MsG0180002489.01.T01:CDS
TGCTGAAGACAAACCAAACG+AGG 0.629605 1:+39033125 MsG0180002489.01.T01:CDS
TTTCTCACCTGAGGAAGAGG+AGG 0.645844 1:+39034766 MsG0180002489.01.T01:CDS
CAAGAATGATTTCTCACCTG+AGG 0.653595 1:+39034757 MsG0180002489.01.T01:CDS
CTATCGGCGTGACTCGTGAG+GGG 0.654531 1:-39032771 None:intergenic
ACTGTTGCAGACATGATCAA+GGG 0.659883 1:+39034698 MsG0180002489.01.T01:CDS
TTACTGCTTGAACTTAAGTG+CGG 0.668620 1:+39034981 MsG0180002489.01.T01:three_prime_UTR
GACCTCGAAAGTCTCACCGT+CGG 0.689632 1:-39032956 None:intergenic
TGATTGATGAGCTAATGCGT+TGG 0.699912 1:+39035036 MsG0180002489.01.T01:three_prime_UTR
GATCAAGGGAAAGACACCAG+AGG 0.742039 1:+39034712 MsG0180002489.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTAATTTAAATGGTTA+AGG + Chr1:39034587-39034606 MsG0180002489.01.T01:intron 10.0%
!! AAAAGAATAAGAATATCATT+TGG - Chr1:39033699-39033718 None:intergenic 15.0%
!!! GGTTTATTCTTTTAAATTTT+AGG + Chr1:39034346-39034365 MsG0180002489.01.T01:intron 15.0%
!!! TTTGACATTTTTTTCTTTTT+AGG + Chr1:39034628-39034647 MsG0180002489.01.T01:intron 15.0%
!!! TTTTATCGTTTATTTGATTT+GGG + Chr1:39033245-39033264 MsG0180002489.01.T01:intron 15.0%
!! AAGAATATCATTTGGATATT+CGG - Chr1:39033691-39033710 None:intergenic 20.0%
!! ATTAAAGAACATATAAAGCA+TGG + Chr1:39034185-39034204 MsG0180002489.01.T01:intron 20.0%
!! TAAGGCTGATTATATATTAT+TGG + Chr1:39034605-39034624 MsG0180002489.01.T01:intron 20.0%
!! TTAAAATTGGTACTAACAAA+GGG + Chr1:39035124-39035143 MsG0180002489.01.T01:three_prime_UTR 20.0%
!! TTCATAAATCAATTGATGTT+CGG - Chr1:39034129-39034148 None:intergenic 20.0%
!!! ATGTTTATGTTATGTTTTGT+TGG + Chr1:39033757-39033776 MsG0180002489.01.T01:intron 20.0%
!!! ATTTCAATTTGTCTTTTGTT+TGG + Chr1:39033361-39033380 MsG0180002489.01.T01:intron 20.0%
!!! GAGTAACTTACATTTTTTAA+TGG - Chr1:39035100-39035119 None:intergenic 20.0%
!!! GGCAAAATATATATTTTTGA+AGG - Chr1:39033580-39033599 None:intergenic 20.0%
!!! GTTTTATCGTTTATTTGATT+TGG + Chr1:39033244-39033263 MsG0180002489.01.T01:intron 20.0%
!!! TACTTAGGTTTTTTTAACAA+TGG - Chr1:39034425-39034444 None:intergenic 20.0%
!!! TTTCAATTTGTCTTTTGTTT+GGG + Chr1:39033362-39033381 MsG0180002489.01.T01:intron 20.0%
! AAAACCAAAAACCCTAATTT+AGG - Chr1:39033295-39033314 None:intergenic 25.0%
! GTATGATATCATTGTTTGTA+TGG + Chr1:39034066-39034085 MsG0180002489.01.T01:intron 25.0%
! GTTAAAATTGGTACTAACAA+AGG + Chr1:39035123-39035142 MsG0180002489.01.T01:three_prime_UTR 25.0%
! TCTTTCAAACCTTAAAGTTT+GGG - Chr1:39033602-39033621 None:intergenic 25.0%
! TTAAAAAAACCTAAGTAGTC+TGG + Chr1:39034428-39034447 MsG0180002489.01.T01:intron 25.0%
! TTCAACAAAAATTTGCATTG+TGG + Chr1:39034829-39034848 MsG0180002489.01.T01:three_prime_UTR 25.0%
! TTCCGATTCAGAAAAAATTA+GGG + Chr1:39032822-39032841 MsG0180002489.01.T01:five_prime_UTR 25.0%
! TTCTTTCAAACCTTAAAGTT+TGG - Chr1:39033603-39033622 None:intergenic 25.0%
! TTTCCGATTCAGAAAAAATT+AGG + Chr1:39032821-39032840 MsG0180002489.01.T01:five_prime_UTR 25.0%
! TTTGTTCTACAACATTGTTA+TGG + Chr1:39033528-39033547 MsG0180002489.01.T01:intron 25.0%
!! ACATTGTCTCAATATTTTGT+TGG - Chr1:39034237-39034256 None:intergenic 25.0%
!! AGCGATTTTATGTTTTCATT+TGG + Chr1:39033635-39033654 MsG0180002489.01.T01:intron 25.0%
!! CTAAGTACTTGTTTATCTTT+TGG + Chr1:39034910-39034929 MsG0180002489.01.T01:three_prime_UTR 25.0%
!!! AAATTAGGGTTTTTGGTTTT+GGG + Chr1:39033295-39033314 MsG0180002489.01.T01:intron 25.0%
!!! AACCCTAATTTTTTCTGAAT+CGG - Chr1:39032827-39032846 None:intergenic 25.0%
!!! AACTTTAAGGTTTGAAAGAA+AGG + Chr1:39033603-39033622 MsG0180002489.01.T01:intron 25.0%
!!! ACTTTAAGGTTTGAAAGAAA+GGG + Chr1:39033604-39033623 MsG0180002489.01.T01:intron 25.0%
!!! ATCTTGGTAAGTTTGTTTTA+GGG + Chr1:39033210-39033229 MsG0180002489.01.T01:intron 25.0%
!!! ATTTGATTTGGGTTTTGTTT+TGG + Chr1:39033256-39033275 MsG0180002489.01.T01:intron 25.0%
!!! TAAATTAGGGTTTTTGGTTT+TGG + Chr1:39033294-39033313 MsG0180002489.01.T01:intron 25.0%
!!! TTGTTTGGGTTGAATTTAAT+GGG + Chr1:39033376-39033395 MsG0180002489.01.T01:intron 25.0%
!!! TTTGTTTGGGTTGAATTTAA+TGG + Chr1:39033375-39033394 MsG0180002489.01.T01:intron 25.0%
AACAAACAAACAGCCATATT+TGG - Chr1:39034375-39034394 None:intergenic 30.0%
AACAATAATCCAGACTACTT+AGG - Chr1:39034440-39034459 None:intergenic 30.0%
AAGTTACTCGCTGTTAAAAT+TGG + Chr1:39035111-39035130 MsG0180002489.01.T01:three_prime_UTR 30.0%
AATCGTGATGTGATTGATTA+GGG - Chr1:39032896-39032915 None:intergenic 30.0%
ACAAACAAACAGCCATATTT+GGG - Chr1:39034374-39034393 None:intergenic 30.0%
ACAACTTCTAGTAAATGTTG+TGG + Chr1:39034324-39034343 MsG0180002489.01.T01:intron 30.0%
ACGCGTTTACTGAAAATTAA+GGG + Chr1:39033919-39033938 MsG0180002489.01.T01:intron 30.0%
ATGAAATTAAACTAGCTGCA+AGG + Chr1:39034144-39034163 MsG0180002489.01.T01:intron 30.0%
ATTAGGGTTTCGTTGAAAAT+TGG - Chr1:39032880-39032899 None:intergenic 30.0%
CAACTTCTAGTAAATGTTGT+GGG + Chr1:39034325-39034344 MsG0180002489.01.T01:intron 30.0%
CTTTCAAACCTTAAAGTTTG+GGG - Chr1:39033601-39033620 None:intergenic 30.0%
GAATGAACGTGTAAAACTAT+CGG - Chr1:39032790-39032809 None:intergenic 30.0%
TAATCGTGATGTGATTGATT+AGG - Chr1:39032897-39032916 None:intergenic 30.0%
TACGCGTTTACTGAAAATTA+AGG + Chr1:39033918-39033937 MsG0180002489.01.T01:intron 30.0%
TGAAATTAAACTAGCTGCAA+GGG + Chr1:39034145-39034164 MsG0180002489.01.T01:intron 30.0%
TTGTTGAGGAAATTGAAGTT+TGG + Chr1:39034455-39034474 MsG0180002489.01.T01:intron 30.0%
! ATATTTTGCCCCAAACTTTA+AGG + Chr1:39033590-39033609 MsG0180002489.01.T01:intron 30.0%
!! AAATTTTAGGAGCCCAAATA+TGG + Chr1:39034359-39034378 MsG0180002489.01.T01:intron 30.0%
!! CATCTTGGTAAGTTTGTTTT+AGG + Chr1:39033209-39033228 MsG0180002489.01.T01:intron 30.0%
!! CTTTAAGGTTTGAAAGAAAG+GGG + Chr1:39033605-39033624 MsG0180002489.01.T01:intron 30.0%
!! GTGTTGCTGAAAATTGTTTT+TGG + Chr1:39034396-39034415 MsG0180002489.01.T01:intron 30.0%
!!! AAGAAGTGGTTCTAATTTTC+AGG + Chr1:39033894-39033913 MsG0180002489.01.T01:intron 30.0%
!!! GGTTTTGTTTTGGAATGTTT+GGG + Chr1:39033266-39033285 MsG0180002489.01.T01:intron 30.0%
!!! GTTTTGTTTTGGAATGTTTG+GGG + Chr1:39033267-39033286 MsG0180002489.01.T01:intron 30.0%
!!! TTTTGTTTTGGAATGTTTGG+GGG + Chr1:39033268-39033287 MsG0180002489.01.T01:intron 30.0%
AAGCATGGACTTACTGTTAA+TGG + Chr1:39034200-39034219 MsG0180002489.01.T01:intron 35.0%
AATAGCATATAGCCCAATAG+AGG - Chr1:39033466-39033485 None:intergenic 35.0%
AGAGAATTTGACATAGTGAG+TGG - Chr1:39033730-39033749 None:intergenic 35.0%
AGTAGTCTGGATTATTGTTG+AGG + Chr1:39034441-39034460 MsG0180002489.01.T01:intron 35.0%
ATAAAAACAACACACTGCAG+TGG - Chr1:39034571-39034590 None:intergenic 35.0%
ATTCGTCGTGTTTGTTTGTT+TGG + Chr1:39033804-39033823 MsG0180002489.01.T01:intron 35.0%
CACACAATCACTTAAAGAAG+TGG + Chr1:39033880-39033899 MsG0180002489.01.T01:intron 35.0%
CACACTATCAATTAGAAGTG+CGG + Chr1:39034297-39034316 MsG0180002489.01.T01:intron 35.0%
CGAGAGAATGTAAAATGCAA+TGG - Chr1:39034540-39034559 None:intergenic 35.0%
TCTTGATGTTGAATGTCTTG+CGG - Chr1:39034742-39034761 None:intergenic 35.0%
TGGAACTATAGTGAACTGAA+TGG + Chr1:39034086-39034105 MsG0180002489.01.T01:intron 35.0%
TTACTGCTTGAACTTAAGTG+CGG + Chr1:39034981-39035000 MsG0180002489.01.T01:three_prime_UTR 35.0%
! TTGTACTATGTCACTTGTCA+AGG + Chr1:39034266-39034285 MsG0180002489.01.T01:intron 35.0%
!! TACGCTTTTTGATCTCATCT+TGG + Chr1:39033194-39033213 MsG0180002489.01.T01:CDS 35.0%
!!! AGGGTTTTGATTTGTCGAAA+AGG + Chr1:39032841-39032860 MsG0180002489.01.T01:five_prime_UTR 35.0%
!!! GGGTTTTGATTTGTCGAAAA+GGG + Chr1:39032842-39032861 MsG0180002489.01.T01:five_prime_UTR 35.0%
!!! GGGTTTTGTTTTGGAATGTT+TGG + Chr1:39033265-39033284 MsG0180002489.01.T01:intron 35.0%
!!! GGTTTTGATTTGTCGAAAAG+GGG + Chr1:39032843-39032862 MsG0180002489.01.T01:five_prime_UTR 35.0%
AAAAAGATAGCCACAAGAGC+AGG - Chr1:39033511-39033530 None:intergenic 40.0%
AAGTTCGTAGGGAAAACCAA+TGG + Chr1:39034789-39034808 MsG0180002489.01.T01:CDS 40.0%
ACTGTTGCAGACATGATCAA+GGG + Chr1:39034698-39034717 MsG0180002489.01.T01:CDS 40.0%
AGCATCATTCAAATGCCCAT+TGG - Chr1:39034808-39034827 None:intergenic 40.0%
AGTTCGTAGGGAAAACCAAT+GGG + Chr1:39034790-39034809 MsG0180002489.01.T01:CDS 40.0%
ATGTTTGGGGGTCCTAAATT+AGG + Chr1:39033280-39033299 MsG0180002489.01.T01:intron 40.0%
ATTGTGCATTGTGCCTCTAT+TGG + Chr1:39033450-39033469 MsG0180002489.01.T01:intron 40.0%
CAAGAATGATTTCTCACCTG+AGG + Chr1:39034757-39034776 MsG0180002489.01.T01:CDS 40.0%
CTTGAATATCAAGAGCTTGC+TGG + Chr1:39034661-39034680 MsG0180002489.01.T01:CDS 40.0%
TGATTGATGAGCTAATGCGT+TGG + Chr1:39035036-39035055 MsG0180002489.01.T01:three_prime_UTR 40.0%
TGTTTGGGGGTCCTAAATTA+GGG + Chr1:39033281-39033300 MsG0180002489.01.T01:intron 40.0%
TTGTGCATTGTGCCTCTATT+GGG + Chr1:39033451-39033470 MsG0180002489.01.T01:intron 40.0%
! AAGATCTTGCTGGTAACGTT+GGG - Chr1:39033060-39033079 None:intergenic 40.0%
! GGGTCCTAAATTAGGGTTTT+TGG + Chr1:39033288-39033307 MsG0180002489.01.T01:intron 40.0%
! TATGTCACTTGTCAAGGTTC+TGG + Chr1:39034272-39034291 MsG0180002489.01.T01:intron 40.0%
! TTGTTATGGTTGATGCTGCT+AGG + Chr1:39033542-39033561 MsG0180002489.01.T01:intron 40.0%
!! GAGTGTTGACTATGTTTCAC+TGG + Chr1:39034946-39034965 MsG0180002489.01.T01:three_prime_UTR 40.0%
AAACTAGCTGCAAGGGATCT+TGG + Chr1:39034152-39034171 MsG0180002489.01.T01:intron 45.0%
ACGAGGATGAGCTTAAGTCT+TGG + Chr1:39033142-39033161 MsG0180002489.01.T01:CDS 45.0%
ATCACTCTCAAGAGTTCCGA+CGG + Chr1:39032940-39032959 MsG0180002489.01.T01:CDS 45.0%
CAACGTTACCAGCAAGATCT+TGG + Chr1:39033059-39033078 MsG0180002489.01.T01:CDS 45.0%
CGAGGATGAGCTTAAGTCTT+GGG + Chr1:39033143-39033162 MsG0180002489.01.T01:CDS 45.0%
CTGATCAACCTTGACGAACT+CGG - Chr1:39033172-39033191 None:intergenic 45.0%
GACTGTTGCAGACATGATCA+AGG + Chr1:39034697-39034716 MsG0180002489.01.T01:CDS 45.0%
GACTTAAGCTCATCCTCGTT+TGG - Chr1:39033141-39033160 None:intergenic 45.0%
TGATCATGTCTGCAACAGTC+TGG - Chr1:39034697-39034716 None:intergenic 45.0%
TGATTTCTCACCTGAGGAAG+AGG + Chr1:39034763-39034782 MsG0180002489.01.T01:CDS 45.0%
TGCTGAAGACAAACCAAACG+AGG + Chr1:39033125-39033144 MsG0180002489.01.T01:CDS 45.0%
TGTTGAATTGCCTGCTCTTG+TGG + Chr1:39033498-39033517 MsG0180002489.01.T01:intron 45.0%
! CAAGATCTTGCTGGTAACGT+TGG - Chr1:39033061-39033080 None:intergenic 45.0%
!! AATGCGTTGGTTTGGCATGA+GGG + Chr1:39035049-39035068 MsG0180002489.01.T01:three_prime_UTR 45.0%
!! GATGAGCTAATGCGTTGGTT+TGG + Chr1:39035041-39035060 MsG0180002489.01.T01:three_prime_UTR 45.0%
!! TAATGCGTTGGTTTGGCATG+AGG + Chr1:39035048-39035067 MsG0180002489.01.T01:three_prime_UTR 45.0%
!!! TTGTTTTTATTTAATTTAAA+TGG + Chr1:39034581-39034600 MsG0180002489.01.T01:intron 5.0%
AATGTCTTGCGGATCTCCTC+TGG - Chr1:39034731-39034750 None:intergenic 50.0%
AGGAAGAGGAGGAAGTTCGT+AGG + Chr1:39034777-39034796 MsG0180002489.01.T01:CDS 50.0%
GACTTTCGAGGTCGATGAAG+CGG + Chr1:39032966-39032985 MsG0180002489.01.T01:CDS 50.0%
GATCAAGGGAAAGACACCAG+AGG + Chr1:39034712-39034731 MsG0180002489.01.T01:CDS 50.0%
GGAAGAGGAGGAAGTTCGTA+GGG + Chr1:39034778-39034797 MsG0180002489.01.T01:CDS 50.0%
TACCAGCAAGATCTTGGCGA+AGG + Chr1:39033065-39033084 MsG0180002489.01.T01:CDS 50.0%
TTGGGATTCCGAGTTCGTCA+AGG + Chr1:39033161-39033180 MsG0180002489.01.T01:CDS 50.0%
TTTCTCACCTGAGGAAGAGG+AGG + Chr1:39034766-39034785 MsG0180002489.01.T01:CDS 50.0%
! CGAGTTCGTCAAGGTTGATC+AGG + Chr1:39033170-39033189 MsG0180002489.01.T01:CDS 50.0%
! GAAGATGATTGCGCTGACAG+TGG + Chr1:39033024-39033043 MsG0180002489.01.T01:CDS 50.0%
! TGCTGGTAACGTTGGGAAGA+GGG - Chr1:39033053-39033072 None:intergenic 50.0%
! TTGCTGGTAACGTTGGGAAG+AGG - Chr1:39033054-39033073 None:intergenic 50.0%
AACTATCGGCGTGACTCGTG+AGG - Chr1:39032776-39032795 None:intergenic 55.0%
ACTATCGGCGTGACTCGTGA+GGG - Chr1:39032775-39032794 None:intergenic 55.0%
CACCTTCGCCAAGATCTTGC+TGG - Chr1:39033070-39033089 None:intergenic 55.0%
CATGTCTGCAACAGTCTGGC+AGG - Chr1:39034693-39034712 None:intergenic 55.0%
CGAACTTCCTCCTCTTCCTC+AGG - Chr1:39034776-39034795 None:intergenic 55.0%
GACCTCGAAAGTCTCACCGT+CGG - Chr1:39032959-39032978 None:intergenic 55.0%
GGTCGATGAAGCGGTTGCTT+TGG + Chr1:39032975-39032994 MsG0180002489.01.T01:CDS 55.0%
TTCCGACGGTGAGACTTTCG+AGG + Chr1:39032954-39032973 MsG0180002489.01.T01:CDS 55.0%
CTATCGGCGTGACTCGTGAG+GGG - Chr1:39032774-39032793 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 39032766 39035159 39032766 ID=MsG0180002489.01;Name=MsG0180002489.01
Chr1 mRNA 39032766 39035159 39032766 ID=MsG0180002489.01.T01;Parent=MsG0180002489.01;Name=MsG0180002489.01.T01;_AED=0.49;_eAED=0.49;_QI=153|1|1|1|1|1|2|336|156
Chr1 exon 39034650 39035159 39034650 ID=MsG0180002489.01.T01:exon:12412;Parent=MsG0180002489.01.T01
Chr1 exon 39032766 39033215 39032766 ID=MsG0180002489.01.T01:exon:12411;Parent=MsG0180002489.01.T01
Chr1 five_prime_UTR 39032766 39032918 39032766 ID=MsG0180002489.01.T01:five_prime_utr;Parent=MsG0180002489.01.T01
Chr1 CDS 39032919 39033215 39032919 ID=MsG0180002489.01.T01:cds;Parent=MsG0180002489.01.T01
Chr1 CDS 39034650 39034823 39034650 ID=MsG0180002489.01.T01:cds;Parent=MsG0180002489.01.T01
Chr1 three_prime_UTR 39034824 39035159 39034824 ID=MsG0180002489.01.T01:three_prime_utr;Parent=MsG0180002489.01.T01
Gene Sequence

>MsG0180002489.01.T01

ATGTCTTCAACAACAAGAAAGATCACTCTCAAGAGTTCCGACGGTGAGACTTTCGAGGTCGATGAAGCGGTTGCTTTGGAATCTCAGACGATCAAGCATATGATCGAAGATGATTGCGCTGACAGTGGAATCCCTCTTCCCAACGTTACCAGCAAGATCTTGGCGAAGGTGATTGAGTATTGCAAGAAGCATGTTGACGCTGCTGCTGCTGAAGACAAACCAAACGAGGATGAGCTTAAGTCTTGGGATTCCGAGTTCGTCAAGGTTGATCAGGCTACGCTTTTTGATCTCATCTTGGCTGCTAATTACTTGAATATCAAGAGCTTGCTGGATCTTACCTGCCAGACTGTTGCAGACATGATCAAGGGAAAGACACCAGAGGAGATCCGCAAGACATTCAACATCAAGAATGATTTCTCACCTGAGGAAGAGGAGGAAGTTCGTAGGGAAAACCAATGGGCATTTGAATGA

Protein sequence

>MsG0180002489.01.T01

MSSTTRKITLKSSDGETFEVDEAVALESQTIKHMIEDDCADSGIPLPNVTSKILAKVIEYCKKHVDAAAAEDKPNEDELKSWDSEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPEEEEEVRRENQWAFE*