AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040411.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040411.01.T01 MTR_7g090330 100.000 182 0 0 44 225 1 182 2.50e-122 345
MsG0780040411.01.T01 MTR_4g072050 36.129 155 93 3 65 219 10 158 1.48e-22 90.5
MsG0780040411.01.T01 MTR_8g076150 36.424 151 91 2 69 219 13 158 1.68e-22 90.1
MsG0780040411.01.T01 MTR_5g021690 35.484 155 94 3 65 219 10 158 5.01e-22 89.0
MsG0780040411.01.T01 MTR_4g010220 71.930 57 11 1 44 100 1 52 7.19e-14 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040411.01.T01 AT2G25610 74.554 224 35 2 1 224 26 227 3.10e-111 318
MsG0780040411.01.T01 AT2G25610 92.000 175 14 0 50 224 4 178 9.11e-111 315
MsG0780040411.01.T01 AT4G32530 93.023 172 12 0 53 224 9 180 2.99e-110 314
MsG0780040411.01.T01 AT4G32530 77.033 209 18 1 46 224 2 210 3.70e-103 297
MsG0780040411.01.T01 AT1G19910 36.129 155 93 3 65 219 11 159 1.66e-22 90.5
MsG0780040411.01.T01 AT4G38920 36.129 155 93 3 65 219 10 158 1.78e-22 90.1
MsG0780040411.01.T01 AT4G34720 36.129 155 93 3 65 219 10 158 1.78e-22 90.1
MsG0780040411.01.T01 AT2G16510 36.129 155 93 3 65 219 10 158 1.78e-22 90.1
MsG0780040411.01.T01 AT1G75630 36.129 155 93 3 65 219 12 160 2.22e-22 90.1
MsG0780040411.01.T01 AT4G38920 37.226 137 81 2 83 219 1 132 1.85e-21 86.7
MsG0780040411.01.T01 AT4G34720 37.226 137 81 2 83 219 5 136 2.88e-21 86.3
MsG0780040411.01.T01 AT1G75630 29.630 189 93 4 65 219 12 194 5.75e-16 73.9

Find 57 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTCATAGATACTTGATTT+TGG 0.177979 7:+77128228 None:intergenic
GGTAGTGCGCTTGGCCTATT+TGG 0.238231 7:-77127930 MsG0780040411.01.T01:CDS
TCTCTGCTGCTTATCCCTTT+TGG 0.270357 7:-77127772 MsG0780040411.01.T01:three_prime_UTR
TATCCAGCTCTAAGAGATTC+TGG 0.324274 7:+77128207 None:intergenic
GGATATGCAATCTTTGCTTC+TGG 0.326193 7:-77128189 MsG0780040411.01.T01:CDS
TCTACCAGAGTTGTTATAGA+AGG 0.330132 7:-77127691 MsG0780040411.01.T01:three_prime_UTR
TGTGAAGCTGTTGCTATATA+TGG 0.352411 7:-77128294 MsG0780040411.01.T01:CDS
ATTCTTGTGATTGAGATCTT+TGG 0.353130 7:-77127951 MsG0780040411.01.T01:CDS
GGCCTATTTGGAGTTATTGT+TGG 0.370654 7:-77127918 MsG0780040411.01.T01:CDS
TTGCAGCGCATTCAAGCTCT+TGG 0.376310 7:-77131387 MsG0780040411.01.T01:CDS
TTTGCTTCTGGACTTATTGT+GGG 0.379757 7:-77128177 MsG0780040411.01.T01:CDS
AGGTTGTGTGTAGGCATAAT+TGG 0.380831 7:-77128023 MsG0780040411.01.T01:CDS
TTCCAACAATAACTCCAAAT+AGG 0.387180 7:+77127916 None:intergenic
CTTTGCTTCTGGACTTATTG+TGG 0.393040 7:-77128178 MsG0780040411.01.T01:CDS
GGCGATACCGATTGCGGAAA+AGG 0.405375 7:+77131333 None:intergenic
CTTGGGCTGCAGCACTCGTC+AGG 0.412435 7:-77131369 MsG0780040411.01.T01:CDS
AGAGGATTGGGATCGGATCT+TGG 0.414602 7:+77131450 None:intergenic
AAATGTGAATTTATTGGTCT+CGG 0.414802 7:-77127576 MsG0780040411.01.T01:three_prime_UTR
TCTCCGTTCTCGGCGCTGCT+TGG 0.425603 7:-77131297 MsG0780040411.01.T01:intron
GCTTCGCAAATCTTGTTTGT+GGG 0.438334 7:-77128155 MsG0780040411.01.T01:intron
TGTTACGTGAGGAGAGGATT+GGG 0.458835 7:+77131438 None:intergenic
TGCAGCGCATTCAAGCTCTT+GGG 0.466822 7:-77131386 MsG0780040411.01.T01:CDS
TCTATCGGTGTCTCCGTTCT+CGG 0.467994 7:-77131307 MsG0780040411.01.T01:CDS
GAGATCTTTGGTAGTGCGCT+TGG 0.473123 7:-77127939 MsG0780040411.01.T01:CDS
TTGTGTAGTGAGATAGAAAG+AGG 0.479871 7:+77131478 None:intergenic
TTTGATCGGTGCTGCTATCA+AGG 0.480937 7:-77131164 MsG0780040411.01.T01:CDS
ATCGGTATCGCCGTCTCTAT+CGG 0.483284 7:-77131322 MsG0780040411.01.T01:CDS
CCGATTGCGGAAAAGGTGTA+TGG 0.489744 7:+77131340 None:intergenic
GGCTTCGCAAATCTTGTTTG+TGG 0.492697 7:-77128156 MsG0780040411.01.T01:CDS
AATACAGCCTACAGTTGTAA+TGG 0.499886 7:+77127715 None:intergenic
TTGTTACGTGAGGAGAGGAT+TGG 0.505254 7:+77131437 None:intergenic
GAACCAGAATCTCTTAGAGC+TGG 0.512261 7:-77128210 MsG0780040411.01.T01:CDS
GCCTTGTATCATCAGTGTGC+GGG 0.527553 7:-77127849 MsG0780040411.01.T01:three_prime_UTR
TGTTGTTGCAGGTTGTGTGT+AGG 0.535435 7:-77128032 MsG0780040411.01.T01:intron
CTACCAGAGTTGTTATAGAA+GGG 0.538207 7:-77127690 MsG0780040411.01.T01:three_prime_UTR
TGAAGGGGAATTTACATCAC+CGG 0.569427 7:-77131193 MsG0780040411.01.T01:intron
ATCACCGGTAGTAGTTTGAT+CGG 0.575017 7:-77131178 MsG0780040411.01.T01:CDS
CTTGTGTCCATTACAACTGT+AGG 0.583896 7:-77127722 MsG0780040411.01.T01:three_prime_UTR
AGTGTGCGGGAATTCAATTA+CGG 0.589846 7:-77127836 MsG0780040411.01.T01:three_prime_UTR
TGCCTTGTATCATCAGTGTG+CGG 0.590305 7:-77127850 MsG0780040411.01.T01:three_prime_UTR
CGTGAGGAGAGGATTGGGAT+CGG 0.595564 7:+77131443 None:intergenic
TCCCGCACACTGATGATACA+AGG 0.596240 7:+77127848 None:intergenic
TTACCAAGCAGCGCCGAGAA+CGG 0.608209 7:+77131294 None:intergenic
TGGTCTCGGCAATAAAGTCA+AGG 0.609715 7:-77127562 MsG0780040411.01.T01:three_prime_UTR
AGCACCGATCAAACTACTAC+CGG 0.613839 7:+77131174 None:intergenic
AACGGAGACACCGATAGAGA+CGG 0.614106 7:+77131312 None:intergenic
AGGCCCTTCTATAACAACTC+TGG 0.614389 7:+77127687 None:intergenic
GTGCTGCTATCAAGGCTCCA+AGG 0.615656 7:-77131156 MsG0780040411.01.T01:CDS
GATGGTTGTTACGTGAGGAG+AGG 0.633092 7:+77131432 None:intergenic
ATCGTGATGGTTGTTACGTG+AGG 0.637703 7:+77131427 None:intergenic
AGAGACGGCGATACCGATTG+CGG 0.644220 7:+77131327 None:intergenic
AGGCTTCAGATGTACTGATG+AGG 0.658242 7:-77127542 MsG0780040411.01.T01:three_prime_UTR
TTATGTCAGCTCAAGCAACA+TGG 0.667422 7:-77127890 MsG0780040411.01.T01:CDS
TGATATATCTGATGACACAC+AGG 0.673327 7:+77127667 None:intergenic
CCTTTATAAGAAACAACCCG+TGG 0.690230 7:-77131546 None:intergenic
ATGGACACAAGCTATCATGT+CGG 0.703308 7:+77127734 None:intergenic
TGCAGAGCTAGACATCGTGA+TGG 0.721177 7:+77131414 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAATGTGAATTTAT+TGG - Chr7:77131445-77131464 MsG0780040411.01.T01:CDS 10.0%
!!! AAAAAAAATTCTTTCTTTTT+TGG + Chr7:77130141-77130160 None:intergenic 10.0%
!! ACTAAAAAACACAAATTTAA+AGG + Chr7:77127940-77127959 None:intergenic 15.0%
!! ATGAAAATGATAAAGAAAAA+AGG - Chr7:77128464-77128483 MsG0780040411.01.T01:intron 15.0%
!! TAAATATCACATAAAATACA+GGG + Chr7:77130512-77130531 None:intergenic 15.0%
!! TACAATACATTTCTTAAAAA+AGG + Chr7:77128907-77128926 None:intergenic 15.0%
!!! ATGTAAATGTTTTACTTTTT+TGG - Chr7:77128236-77128255 MsG0780040411.01.T01:CDS 15.0%
!!! TTTTTAAGAAATGTATTGTA+GGG - Chr7:77128907-77128926 MsG0780040411.01.T01:intron 15.0%
!!! TTTTTTAAGAAATGTATTGT+AGG - Chr7:77128906-77128925 MsG0780040411.01.T01:intron 15.0%
!! AAATAATGAGACATCAAAAT+AGG - Chr7:77128664-77128683 MsG0780040411.01.T01:intron 20.0%
!! AAGTAAAACATTTACATCAA+AGG + Chr7:77128233-77128252 None:intergenic 20.0%
!! AATACAAACTTAAACGTAAA+AGG + Chr7:77130598-77130617 None:intergenic 20.0%
!! AATCAGGAAAAAATTATTGA+GGG - Chr7:77128631-77128650 MsG0780040411.01.T01:intron 20.0%
!! ACAATAAAATCTTGTATGTA+TGG + Chr7:77129564-77129583 None:intergenic 20.0%
!! ATGTTTAATGCTTAATATCA+TGG - Chr7:77128130-77128149 MsG0780040411.01.T01:intron 20.0%
!! CTAAATATCACATAAAATAC+AGG + Chr7:77130513-77130532 None:intergenic 20.0%
!! TAAACAACAGATTCAAATAA+CGG + Chr7:77127805-77127824 None:intergenic 20.0%
!! TTATATAAAATACACAGAGA+CGG + Chr7:77128755-77128774 None:intergenic 20.0%
!!! AAAATGTTTACTTTTGGATT+TGG - Chr7:77129088-77129107 MsG0780040411.01.T01:intron 20.0%
!!! AAACAAGTGAAATAATTTTG+TGG - Chr7:77129887-77129906 MsG0780040411.01.T01:intron 20.0%
!!! AAGAGATAATTTGATTTGAA+AGG + Chr7:77127781-77127800 None:intergenic 20.0%
!!! AAGTAGAAAATGTTTACTTT+TGG - Chr7:77129082-77129101 MsG0780040411.01.T01:intron 20.0%
!!! AGAGATAATTTGATTTGAAA+GGG + Chr7:77127780-77127799 None:intergenic 20.0%
!!! TGTAAAGAATTACCTAATTT+TGG + Chr7:77129691-77129710 None:intergenic 20.0%
!!! TGTATTTTAAAAAGCTCTAT+TGG - Chr7:77130289-77130308 MsG0780040411.01.T01:intron 20.0%
! AAATGAGGAAGTTAATTACT+AGG - Chr7:77128177-77128196 MsG0780040411.01.T01:CDS 25.0%
! AATAATTGAGTATGTAGAAC+AGG + Chr7:77130973-77130992 None:intergenic 25.0%
! AGGGGAAAATTGAAAAAAAT+AGG + Chr7:77127761-77127780 None:intergenic 25.0%
! ATCAGGAAAAAATTATTGAG+GGG - Chr7:77128632-77128651 MsG0780040411.01.T01:intron 25.0%
! ATTGCTTCAGAAAAATGTTT+AGG - Chr7:77129380-77129399 MsG0780040411.01.T01:intron 25.0%
! ATTTAATGAAGTATGTTGCT+TGG + Chr7:77129152-77129171 None:intergenic 25.0%
! CAAAGTGATACTCTAATTAT+TGG - Chr7:77130079-77130098 MsG0780040411.01.T01:intron 25.0%
! GAATATTTCCGTAAATTCAT+GGG - Chr7:77130039-77130058 MsG0780040411.01.T01:intron 25.0%
! GAATCAGGAAAAAATTATTG+AGG - Chr7:77128630-77128649 MsG0780040411.01.T01:intron 25.0%
! GATACTTGTAGTAATTAAGT+CGG - Chr7:77129640-77129659 MsG0780040411.01.T01:intron 25.0%
! GCTAAACAAATGGTTAATTA+AGG - Chr7:77130479-77130498 MsG0780040411.01.T01:intron 25.0%
! GCTCATAATAAATGATCATT+TGG - Chr7:77128395-77128414 MsG0780040411.01.T01:intron 25.0%
! GGGGAAAATTGAAAAAAATA+GGG + Chr7:77127760-77127779 None:intergenic 25.0%
! GTTACTTGTAGTAATTAAGT+CGG - Chr7:77129618-77129637 MsG0780040411.01.T01:intron 25.0%
! TGAATATTTCCGTAAATTCA+TGG - Chr7:77130038-77130057 MsG0780040411.01.T01:intron 25.0%
! TTCCAGAAACAAATTCTATT+TGG + Chr7:77129715-77129734 None:intergenic 25.0%
! TTGTTTATGTAATGGTTGAA+GGG - Chr7:77127818-77127837 MsG0780040411.01.T01:three_prime_UTR 25.0%
!! AAATGTGAATTTATTGGTCT+CGG - Chr7:77131451-77131470 MsG0780040411.01.T01:CDS 25.0%
!! AACCAAATAGAATTTGTTTC+TGG - Chr7:77129710-77129729 MsG0780040411.01.T01:intron 25.0%
!! AAGGCAAACTAAATTTTTGA+GGG + Chr7:77131163-77131182 None:intergenic 25.0%
!! AGTAAACATTTTCTACTTAG+CGG + Chr7:77129080-77129099 None:intergenic 25.0%
!! TACATACCTAATGAGATTTT+TGG + Chr7:77127904-77127923 None:intergenic 25.0%
!! TCACAATACTGTTTTATAGA+AGG - Chr7:77129307-77129326 MsG0780040411.01.T01:intron 25.0%
!! TGAATCTGTTGTTTATGTAA+TGG - Chr7:77127810-77127829 MsG0780040411.01.T01:three_prime_UTR 25.0%
!! TTATTTTCCTACAGAACAAT+TGG + Chr7:77128563-77128582 None:intergenic 25.0%
!! TTTTTACATTCTTGCCAAAA+GGG + Chr7:77131272-77131291 None:intergenic 25.0%
!!! AATTCTTTCTTTTTTGGTCA+AGG + Chr7:77130135-77130154 None:intergenic 25.0%
!!! CTAGTTTCTTTTTAGTTGAA+AGG - Chr7:77128154-77128173 MsG0780040411.01.T01:intron 25.0%
!!! GAGATAATTTGATTTGAAAG+GGG + Chr7:77127779-77127798 None:intergenic 25.0%
!!! GGATAATATTCACTTTTGAT+TGG - Chr7:77129661-77129680 MsG0780040411.01.T01:intron 25.0%
!!! TCAATTATTTTTGTTGTTGC+AGG - Chr7:77130984-77131003 MsG0780040411.01.T01:intron 25.0%
!!! TTTTTAGTTGAAAGGAAATG+AGG - Chr7:77128162-77128181 MsG0780040411.01.T01:CDS 25.0%
!!! TTTTTTACATTCTTGCCAAA+AGG + Chr7:77131273-77131292 None:intergenic 25.0%
AAAGGAATTGTTATAGAGCT+TGG - Chr7:77128083-77128102 MsG0780040411.01.T01:intron 30.0%
AACTATCAAAAAAGACCCAA+AGG - Chr7:77129761-77129780 MsG0780040411.01.T01:intron 30.0%
AAGCGATATTACTATGTATC+TGG - Chr7:77128337-77128356 MsG0780040411.01.T01:intron 30.0%
AATCACGCAGAACAAAAATT+TGG + Chr7:77129467-77129486 None:intergenic 30.0%
ACAGTTCATAGTGAAAATCT+TGG + Chr7:77130376-77130395 None:intergenic 30.0%
AGATCTCAACACATAATCTT+TGG - Chr7:77130218-77130237 MsG0780040411.01.T01:intron 30.0%
ATCATTTGGTCTGATATGAA+GGG - Chr7:77128409-77128428 MsG0780040411.01.T01:intron 30.0%
ATTCTTGTGATTGAGATCTT+TGG - Chr7:77131076-77131095 MsG0780040411.01.T01:intron 30.0%
GATAAATGAGAAAGACTTGT+TGG + Chr7:77129186-77129205 None:intergenic 30.0%
GGTTAATAACTAATACTACC+AGG + Chr7:77129543-77129562 None:intergenic 30.0%
GGTTTAAACCACAAAAACAA+AGG - Chr7:77127502-77127521 MsG0780040411.01.T01:three_prime_UTR 30.0%
GTAACATGATATATACCAAG+TGG - Chr7:77129928-77129947 MsG0780040411.01.T01:intron 30.0%
GTTGTTTATGTAATGGTTGA+AGG - Chr7:77127817-77127836 MsG0780040411.01.T01:three_prime_UTR 30.0%
TCACTGTGTAATCATACAAT+TGG - Chr7:77128517-77128536 MsG0780040411.01.T01:intron 30.0%
TCACTTCCAAAAATCTCATT+AGG - Chr7:77127895-77127914 MsG0780040411.01.T01:CDS 30.0%
TCAGGAAAAAATTATTGAGG+GGG - Chr7:77128633-77128652 MsG0780040411.01.T01:intron 30.0%
TGTTTATGTAATGGTTGAAG+GGG - Chr7:77127819-77127838 MsG0780040411.01.T01:three_prime_UTR 30.0%
TTCCAACAATAACTCCAAAT+AGG + Chr7:77131114-77131133 None:intergenic 30.0%
TTTGATGCAAGGAAAATCAA+AGG + Chr7:77130177-77130196 None:intergenic 30.0%
! CAAGGCAAACTAAATTTTTG+AGG + Chr7:77131164-77131183 None:intergenic 30.0%
! CAAGTGAAATAATTTTGTGG+AGG - Chr7:77129890-77129909 MsG0780040411.01.T01:intron 30.0%
! CTCGATGATAAGTTTTACAA+TGG - Chr7:77127977-77127996 MsG0780040411.01.T01:CDS 30.0%
! CTGTTGATTGAACTTAGATA+GGG - Chr7:77128017-77128036 MsG0780040411.01.T01:CDS 30.0%
! GGTTCATAGATACTTGATTT+TGG + Chr7:77130802-77130821 None:intergenic 30.0%
! GTTTTGCTTTGATTGATGTT+TGG - Chr7:77128055-77128074 MsG0780040411.01.T01:intron 30.0%
! TCTGTTGATTGAACTTAGAT+AGG - Chr7:77128016-77128035 MsG0780040411.01.T01:CDS 30.0%
!! AACCATTTGTTTAGCCTTAA+AGG + Chr7:77130474-77130493 None:intergenic 30.0%
!! AACCTTTAAGGCTAAACAAA+TGG - Chr7:77130469-77130488 MsG0780040411.01.T01:intron 30.0%
!! ATGTTTACTTTTGGATTTGG+CGG - Chr7:77129091-77129110 MsG0780040411.01.T01:intron 30.0%
!! TGTTTTTGTGGTTTAAACCA+CGG + Chr7:77127501-77127520 None:intergenic 30.0%
!! TTGACTTTGACTTGACAATA+TGG - Chr7:77130676-77130695 MsG0780040411.01.T01:intron 30.0%
!!! ATCTGTCATTTTTAGTGTTG+AGG - Chr7:77128308-77128327 MsG0780040411.01.T01:intron 30.0%
!!! ATGTTTGTCCTTTGTTTTTG+TGG + Chr7:77127513-77127532 None:intergenic 30.0%
!!! GGTCTTTTTTGATAGTTTTC+TGG + Chr7:77129758-77129777 None:intergenic 30.0%
!!! GTTTTGGTTATGTTTTACAG+AGG - Chr7:77130258-77130277 MsG0780040411.01.T01:intron 30.0%
!!! TACTTTTTTGGCGACTTAAT+GGG - Chr7:77128248-77128267 MsG0780040411.01.T01:CDS 30.0%
!!! TTACTTTTTTGGCGACTTAA+TGG - Chr7:77128247-77128266 MsG0780040411.01.T01:CDS 30.0%
!!! TTTTCTGAAGCAATTGTTGA+GGG + Chr7:77129374-77129393 None:intergenic 30.0%
!!! TTTTTCTGAAGCAATTGTTG+AGG + Chr7:77129375-77129394 None:intergenic 30.0%
AAAAAAGACCCAAAGGTCAA+TGG - Chr7:77129768-77129787 MsG0780040411.01.T01:intron 35.0%
AAAAAATTATTGAGGGGGGT+GGG - Chr7:77128638-77128657 MsG0780040411.01.T01:intron 35.0%
AAAGCATGGTAAAGTGATTG+TGG - Chr7:77130194-77130213 MsG0780040411.01.T01:intron 35.0%
AACGTGAGATTCTTACATGA+TGG + Chr7:77130443-77130462 None:intergenic 35.0%
AATACAGCCTACAGTTGTAA+TGG + Chr7:77131315-77131334 None:intergenic 35.0%
AGAATTCTCATGGAGAATGT+AGG - Chr7:77130933-77130952 MsG0780040411.01.T01:intron 35.0%
ATTGAGTATGTAGAACAGGA+TGG + Chr7:77130969-77130988 None:intergenic 35.0%
ATTGTTGATCGAGCTCAAAA+TGG - Chr7:77128965-77128984 MsG0780040411.01.T01:intron 35.0%
ATTTCCGTAAATTCATGGGT+TGG - Chr7:77130043-77130062 MsG0780040411.01.T01:intron 35.0%
CAGGAAAAAATTATTGAGGG+GGG - Chr7:77128634-77128653 MsG0780040411.01.T01:intron 35.0%
CATCTTCACAAGAATTCTCA+TGG - Chr7:77130923-77130942 MsG0780040411.01.T01:intron 35.0%
CTACATCAATTAAACGACAC+TGG + Chr7:77129511-77129530 None:intergenic 35.0%
CTACCAGAGTTGTTATAGAA+GGG - Chr7:77131337-77131356 MsG0780040411.01.T01:CDS 35.0%
GAATTCTCATGGAGAATGTA+GGG - Chr7:77130934-77130953 MsG0780040411.01.T01:intron 35.0%
GATCATTTGGTCTGATATGA+AGG - Chr7:77128408-77128427 MsG0780040411.01.T01:intron 35.0%
TATCCCAACCCATGAATTTA+CGG + Chr7:77130050-77130069 None:intergenic 35.0%
TATGTAGAACAGGATGGATA+AGG + Chr7:77130963-77130982 None:intergenic 35.0%
TCTACCAGAGTTGTTATAGA+AGG - Chr7:77131336-77131355 MsG0780040411.01.T01:CDS 35.0%
TGATATATCTGATGACACAC+AGG + Chr7:77131363-77131382 None:intergenic 35.0%
TGATTACACAGTGAGTTTAG+TGG + Chr7:77128511-77128530 None:intergenic 35.0%
TGTGAAGCTGTTGCTATATA+TGG - Chr7:77130733-77130752 MsG0780040411.01.T01:intron 35.0%
TTAGCGGTTCTCATGATAAA+AGG + Chr7:77129064-77129083 None:intergenic 35.0%
TTGATTGGCACACCAAAATT+AGG - Chr7:77129676-77129695 MsG0780040411.01.T01:intron 35.0%
TTGCTTTGATTGATGTTTGG+AGG - Chr7:77128058-77128077 MsG0780040411.01.T01:intron 35.0%
TTGTGAAGATGTGAATATGC+AGG + Chr7:77130914-77130933 None:intergenic 35.0%
TTGTGTAGTGAGATAGAAAG+AGG + Chr7:77127552-77127571 None:intergenic 35.0%
TTTCCGTAAATTCATGGGTT+GGG - Chr7:77130044-77130063 MsG0780040411.01.T01:intron 35.0%
TTTGCTTCTGGACTTATTGT+GGG - Chr7:77130850-77130869 MsG0780040411.01.T01:intron 35.0%
! AACACATAATCTTTGGCTTC+TGG - Chr7:77130225-77130244 MsG0780040411.01.T01:intron 35.0%
! AAGAATTTTCACGAAGAGAG+AGG + Chr7:77131062-77131081 None:intergenic 35.0%
! ATTTTCCTTGCATCAAAGCA+TGG - Chr7:77130180-77130199 MsG0780040411.01.T01:intron 35.0%
! CACGTTTTCTCAAACCTTTA+AGG - Chr7:77130457-77130476 MsG0780040411.01.T01:intron 35.0%
! GTTTTTGTGGTTTAAACCAC+GGG + Chr7:77127500-77127519 None:intergenic 35.0%
! TTACATTTGAGTGTTGTGAG+TGG - Chr7:77130565-77130584 MsG0780040411.01.T01:intron 35.0%
!! AGATTTTTGGAAGTGATCCT+TGG + Chr7:77127891-77127910 None:intergenic 35.0%
!! GTTCTGCGTGATTTGTTTAA+AGG - Chr7:77129474-77129493 MsG0780040411.01.T01:intron 35.0%
!! TATTGGTGTGTGTTTGGTTT+TGG - Chr7:77130306-77130325 MsG0780040411.01.T01:intron 35.0%
!! TGTTTACTTTTGGATTTGGC+GGG - Chr7:77129092-77129111 MsG0780040411.01.T01:intron 35.0%
!! TTTCTGAAGCAATTGTTGAG+GGG + Chr7:77129373-77129392 None:intergenic 35.0%
!! TTTGATAGTTTTCTGGTGTC+TGG + Chr7:77129751-77129770 None:intergenic 35.0%
!!! GTTGCTTTTGTTGCTTTGTT+TGG - Chr7:77129588-77129607 MsG0780040411.01.T01:intron 35.0%
!!! TGTCATTTTTAGTGTTGAGG+AGG - Chr7:77128311-77128330 MsG0780040411.01.T01:intron 35.0%
AAATACACAGAGACGGAACT+AGG + Chr7:77128748-77128767 None:intergenic 40.0%
AAGCTCTATTGGTGTGTGTT+TGG - Chr7:77130300-77130319 MsG0780040411.01.T01:intron 40.0%
AGGTTGTGTGTAGGCATAAT+TGG - Chr7:77131004-77131023 MsG0780040411.01.T01:intron 40.0%
AGTGTGCGGGAATTCAATTA+CGG - Chr7:77131191-77131210 MsG0780040411.01.T01:CDS 40.0%
ATCACCGGTAGTAGTTTGAT+CGG - Chr7:77127849-77127868 MsG0780040411.01.T01:three_prime_UTR 40.0%
ATGGACACAAGCTATCATGT+CGG + Chr7:77131296-77131315 None:intergenic 40.0%
CCACTAAGTAGCATTGTAGT+TGG - Chr7:77128999-77129018 MsG0780040411.01.T01:intron 40.0%
CTATGCATGTAACAGTGAGT+GGG - Chr7:77128856-77128875 MsG0780040411.01.T01:intron 40.0%
CTTGTGTCCATTACAACTGT+AGG - Chr7:77131305-77131324 MsG0780040411.01.T01:CDS 40.0%
CTTTACCATGCTTTGATGCA+AGG + Chr7:77130188-77130207 None:intergenic 40.0%
CTTTGCTTCTGGACTTATTG+TGG - Chr7:77130849-77130868 MsG0780040411.01.T01:intron 40.0%
CTTTGGTCCAATTGTTCTGT+AGG - Chr7:77128553-77128572 MsG0780040411.01.T01:intron 40.0%
GAAAAAATTATTGAGGGGGG+TGG - Chr7:77128637-77128656 MsG0780040411.01.T01:intron 40.0%
GATTGATGTTTGGAGGAGAA+AGG - Chr7:77128065-77128084 MsG0780040411.01.T01:intron 40.0%
GGATATGCAATCTTTGCTTC+TGG - Chr7:77130838-77130857 MsG0780040411.01.T01:intron 40.0%
GTTCCAAATACAACCGTTTG+TGG - Chr7:77130650-77130669 MsG0780040411.01.T01:intron 40.0%
TAAGCCAACCATTGACCTTT+GGG + Chr7:77129779-77129798 None:intergenic 40.0%
TCAAAGTCAAGTGCCACAAA+CGG + Chr7:77130666-77130685 None:intergenic 40.0%
TCTATGCATGTAACAGTGAG+TGG - Chr7:77128855-77128874 MsG0780040411.01.T01:intron 40.0%
TGAAGGGGAATTTACATCAC+CGG - Chr7:77127834-77127853 MsG0780040411.01.T01:three_prime_UTR 40.0%
TTAAGCCAACCATTGACCTT+TGG + Chr7:77129780-77129799 None:intergenic 40.0%
TTACACAGTGAGTTTAGTGG+AGG + Chr7:77128508-77128527 None:intergenic 40.0%
TTATGTCAGCTCAAGCAACA+TGG - Chr7:77131137-77131156 MsG0780040411.01.T01:CDS 40.0%
TTGATGTAGCTAACTTCACC+TGG - Chr7:77129522-77129541 MsG0780040411.01.T01:intron 40.0%
! CAATGCTACTTAGTGGTAAC+TGG + Chr7:77128995-77129014 None:intergenic 40.0%
! CCAACTACAATGCTACTTAG+TGG + Chr7:77129002-77129021 None:intergenic 40.0%
! CGCTTTCTAATTTTGTCTGC+AGG + Chr7:77130777-77130796 None:intergenic 40.0%
! CTAGCTCATTTGGTTTAGTG+TGG - Chr7:77129229-77129248 MsG0780040411.01.T01:intron 40.0%
! GCTTCGCAAATCTTGTTTGT+GGG - Chr7:77130872-77130891 MsG0780040411.01.T01:intron 40.0%
! GGCCTATTTGGAGTTATTGT+TGG - Chr7:77131109-77131128 MsG0780040411.01.T01:intron 40.0%
!! TATCCAGCTCTAAGAGATTC+TGG + Chr7:77130823-77130842 None:intergenic 40.0%
!! TTCTGGTGTGTGTTTGGTTT+TGG - Chr7:77130242-77130261 MsG0780040411.01.T01:intron 40.0%
!! TTTTTGGCGACTTAATGGGT+GGG - Chr7:77128252-77128271 MsG0780040411.01.T01:CDS 40.0%
!!! TTTTTTGGCGACTTAATGGG+TGG - Chr7:77128251-77128270 MsG0780040411.01.T01:CDS 40.0%
AACCAAATGAGCTAGTGCAG+AGG + Chr7:77129224-77129243 None:intergenic 45.0%
AAGACCCAAAGGTCAATGGT+TGG - Chr7:77129772-77129791 MsG0780040411.01.T01:intron 45.0%
ACCAAATGAGCTAGTGCAGA+GGG + Chr7:77129223-77129242 None:intergenic 45.0%
ACTATCACTCAGCTTCCACT+TGG + Chr7:77129946-77129965 None:intergenic 45.0%
AGGCCCTTCTATAACAACTC+TGG + Chr7:77131343-77131362 None:intergenic 45.0%
ATCGTGATGGTTGTTACGTG+AGG + Chr7:77127603-77127622 None:intergenic 45.0%
ATGTCACTGGTACACCCAAA+TGG + Chr7:77129263-77129282 None:intergenic 45.0%
GAACCAGAATCTCTTAGAGC+TGG - Chr7:77130817-77130836 MsG0780040411.01.T01:intron 45.0%
GGTGTACCAGTGACATCAAT+CGG - Chr7:77129267-77129286 MsG0780040411.01.T01:intron 45.0%
GTGCCACAAACGGTTGTATT+TGG + Chr7:77130656-77130675 None:intergenic 45.0%
TGCCTTGTATCATCAGTGTG+CGG - Chr7:77131177-77131196 MsG0780040411.01.T01:CDS 45.0%
TGGTCTCGGCAATAAAGTCA+AGG - Chr7:77131465-77131484 MsG0780040411.01.T01:CDS 45.0%
TGTTACGTGAGGAGAGGATT+GGG + Chr7:77127592-77127611 None:intergenic 45.0%
TGTTGTTGCAGGTTGTGTGT+AGG - Chr7:77130995-77131014 MsG0780040411.01.T01:intron 45.0%
TTGTTACGTGAGGAGAGGAT+TGG + Chr7:77127593-77127612 None:intergenic 45.0%
! AGGCTTCAGATGTACTGATG+AGG - Chr7:77131485-77131504 MsG0780040411.01.T01:CDS 45.0%
! AGTGTGGTTTGTCCTCCATT+TGG - Chr7:77129245-77129264 MsG0780040411.01.T01:intron 45.0%
! CCATACACCTTTTCCGCAAT+CGG - Chr7:77127687-77127706 MsG0780040411.01.T01:three_prime_UTR 45.0%
! GGCTTCGCAAATCTTGTTTG+TGG - Chr7:77130871-77130890 MsG0780040411.01.T01:intron 45.0%
! GTGTGGTTTGTCCTCCATTT+GGG - Chr7:77129246-77129265 MsG0780040411.01.T01:intron 45.0%
! TGGACCAAAGTGCTTTGTTG+TGG + Chr7:77128543-77128562 None:intergenic 45.0%
! TTGGCCACAACAAAGCACTT+TGG - Chr7:77128536-77128555 MsG0780040411.01.T01:intron 45.0%
! TTTGGCTTCTGGTGTGTGTT+TGG - Chr7:77130236-77130255 MsG0780040411.01.T01:intron 45.0%
!! AGCACCGATCAAACTACTAC+CGG + Chr7:77127856-77127875 None:intergenic 45.0%
!! TCTCTGCTGCTTATCCCTTT+TGG - Chr7:77131255-77131274 MsG0780040411.01.T01:intron 45.0%
!! TTACTTTTGGATTTGGCGGG+TGG - Chr7:77129095-77129114 MsG0780040411.01.T01:intron 45.0%
!! TTTGATCGGTGCTGCTATCA+AGG - Chr7:77127863-77127882 MsG0780040411.01.T01:exon 45.0%
AAATTATTGAGGGGGGTGGG+AGG - Chr7:77128641-77128660 MsG0780040411.01.T01:intron 50.0%
AACGGAGACACCGATAGAGA+CGG + Chr7:77127718-77127737 None:intergenic 50.0%
AGACAGCCGATTGATGTCAC+TGG + Chr7:77129276-77129295 None:intergenic 50.0%
AGAGGATTGGGATCGGATCT+TGG + Chr7:77127580-77127599 None:intergenic 50.0%
AGTGCAGAGGGAAGTTGACA+TGG + Chr7:77129211-77129230 None:intergenic 50.0%
ATCGGTATCGCCGTCTCTAT+CGG - Chr7:77127705-77127724 MsG0780040411.01.T01:three_prime_UTR 50.0%
GATGGTTGTTACGTGAGGAG+AGG + Chr7:77127598-77127617 None:intergenic 50.0%
GCCTTGTATCATCAGTGTGC+GGG - Chr7:77131178-77131197 MsG0780040411.01.T01:CDS 50.0%
TCACCACTGTGTCGTGTTAG+AGG - Chr7:77128605-77128624 MsG0780040411.01.T01:intron 50.0%
TCACTGGTACACCCAAATGG+AGG + Chr7:77129260-77129279 None:intergenic 50.0%
TCCCGCACACTGATGATACA+AGG + Chr7:77131182-77131201 None:intergenic 50.0%
TCCCTCTGCACTAGCTCATT+TGG - Chr7:77129219-77129238 MsG0780040411.01.T01:intron 50.0%
TCTAACACGACACAGTGGTG+AGG + Chr7:77128606-77128625 None:intergenic 50.0%
TGCAGAGCTAGACATCGTGA+TGG + Chr7:77127616-77127635 None:intergenic 50.0%
TGCAGCGCATTCAAGCTCTT+GGG - Chr7:77127641-77127660 MsG0780040411.01.T01:three_prime_UTR 50.0%
TGCATGTAACAGTGAGTGGG+TGG - Chr7:77128859-77128878 MsG0780040411.01.T01:intron 50.0%
TGGAACTATTGCTGCTGTGC+AGG + Chr7:77130636-77130655 None:intergenic 50.0%
TTGCAGCGCATTCAAGCTCT+TGG - Chr7:77127640-77127659 MsG0780040411.01.T01:three_prime_UTR 50.0%
! AAGCCTTATCCCACTCTAGG+TGG + Chr7:77129835-77129854 None:intergenic 50.0%
! CCGATTGCGGAAAAGGTGTA+TGG + Chr7:77127690-77127709 None:intergenic 50.0%
! GCTAAGCCTTATCCCACTCT+AGG + Chr7:77129838-77129857 None:intergenic 50.0%
! TCTATCGGTGTCTCCGTTCT+CGG - Chr7:77127720-77127739 MsG0780040411.01.T01:three_prime_UTR 50.0%
!! GAGATCTTTGGTAGTGCGCT+TGG - Chr7:77131088-77131107 MsG0780040411.01.T01:intron 50.0%
ACAGTGAGTGGGTGGTTGTC+TGG - Chr7:77128867-77128886 MsG0780040411.01.T01:intron 55.0%
ACGCCACCTAGAGTGGGATA+AGG - Chr7:77129829-77129848 MsG0780040411.01.T01:intron 55.0%
CAGTGAGTGGGTGGTTGTCT+GGG - Chr7:77128868-77128887 MsG0780040411.01.T01:intron 55.0%
CCACTGTGTCGTGTTAGAGG+CGG - Chr7:77128608-77128627 MsG0780040411.01.T01:intron 55.0%
CGTGAGGAGAGGATTGGGAT+CGG + Chr7:77127587-77127606 None:intergenic 55.0%
GGTAGTGCGCTTGGCCTATT+TGG - Chr7:77131097-77131116 MsG0780040411.01.T01:intron 55.0%
GTCGTGTTAGAGGCGGAATC+AGG - Chr7:77128615-77128634 MsG0780040411.01.T01:intron 55.0%
TATCCCACTCTAGGTGGCGT+CGG + Chr7:77129829-77129848 None:intergenic 55.0%
! AGAGACGGCGATACCGATTG+CGG + Chr7:77127703-77127722 None:intergenic 55.0%
! GGCGATACCGATTGCGGAAA+AGG + Chr7:77127697-77127716 None:intergenic 55.0%
! GTGCTGCTATCAAGGCTCCA+AGG - Chr7:77127871-77127890 MsG0780040411.01.T01:exon 55.0%
! TTACCAAGCAGCGCCGAGAA+CGG + Chr7:77127736-77127755 None:intergenic 55.0%
CCGCCTCTAACACGACACAG+TGG + Chr7:77128611-77128630 None:intergenic 60.0%
TAGCCGACGCCACCTAGAGT+GGG - Chr7:77129823-77129842 MsG0780040411.01.T01:intron 60.0%
CTTGGGCTGCAGCACTCGTC+AGG - Chr7:77127658-77127677 MsG0780040411.01.T01:three_prime_UTR 65.0%
GTAGCCGACGCCACCTAGAG+TGG - Chr7:77129822-77129841 MsG0780040411.01.T01:intron 65.0%
TCTCCGTTCTCGGCGCTGCT+TGG - Chr7:77127730-77127749 MsG0780040411.01.T01:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 77127492 77131557 77127492 ID=MsG0780040411.01;Name=MsG0780040411.01
Chr7 mRNA 77127492 77131557 77127492 ID=MsG0780040411.01.T01;Parent=MsG0780040411.01;Name=MsG0780040411.01.T01;_AED=0.42;_eAED=0.45;_QI=0|1|0.75|1|1|1|4|383|225
Chr7 exon 77127492 77128043 77127492 ID=MsG0780040411.01.T01:exon:15260;Parent=MsG0780040411.01.T01
Chr7 exon 77128156 77128326 77128156 ID=MsG0780040411.01.T01:exon:15259;Parent=MsG0780040411.01.T01
Chr7 exon 77131133 77131210 77131133 ID=MsG0780040411.01.T01:exon:15258;Parent=MsG0780040411.01.T01
Chr7 exon 77131298 77131557 77131298 ID=MsG0780040411.01.T01:exon:15257;Parent=MsG0780040411.01.T01
Chr7 CDS 77131298 77131557 77131298 ID=MsG0780040411.01.T01:cds;Parent=MsG0780040411.01.T01
Chr7 CDS 77131133 77131210 77131133 ID=MsG0780040411.01.T01:cds;Parent=MsG0780040411.01.T01
Chr7 CDS 77128156 77128326 77128156 ID=MsG0780040411.01.T01:cds;Parent=MsG0780040411.01.T01
Chr7 CDS 77127875 77128043 77127875 ID=MsG0780040411.01.T01:cds;Parent=MsG0780040411.01.T01
Chr7 three_prime_UTR 77127492 77127874 77127492 ID=MsG0780040411.01.T01:three_prime_utr;Parent=MsG0780040411.01.T01
Gene Sequence

>MsG0780040411.01.T01

AACAACCCGTGGTTTAAACCACAAAAACAAAGGACAAACATCAATAAACACAGCTTTCCTCTTTCTATCTCACTACACAAATTCTCCAAGATCCGATCCCAATCCTCTCCTCACGTAACAACCATCACGATGTCTAGCTCTGCAATCATTGCAGCGCATTCAAGCTCTTGGGCTGCAGCACTCGTCAGGATCTCTCCATACACCTTTTCCGCAATCGGTATCGCCGTCTCTATCGGTGTCTCCGTTCTCGGCGCTGCTTGGGGAATTTACATCACCGGTAGTAGTTTGATCGGTGCTGCTATCAAGGCTCCAAGGATCACTTCCAAAAATCTCATTAGTGTAATCTTCTGTGAAGCTGTTGCTATATATGGTGTTATTGTCGCTATTATCCTGCAGACAAAATTAGAAAGCGTTCCAAAATCAAGTATCTATGAACCAGAATCTCTTAGAGCTGGATATGCAATCTTTGCTTCTGGACTTATTGTGGGCTTCGCAAATCTTGTTTGTGGGTTGTGTGTAGGCATAATTGGAAGCAGTTGTGCATTGTCTGATGCTCAGAACTCCTCTCTCTTCGTGAAAATTCTTGTGATTGAGATCTTTGGTAGTGCGCTTGGCCTATTTGGAGTTATTGTTGGAATTATTATGTCAGCTCAAGCAACATGGCCCTCAAAAATTTAG

Protein sequence

>MsG0780040411.01.T01

NNPWFKPQKQRTNINKHSFPLSISLHKFSKIRSQSSPHVTTITMSSSAIIAAHSSSWAAALVRISPYTFSAIGIAVSIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPKSSIYEPESLRAGYAIFASGLIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPSKI*