Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041101.01.T01 | XP_039684368.1 | 67.284 | 162 | 33 | 1 | 10 | 151 | 111 | 272 | 5.04E-64 | 210 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041101.01.T01 | A0A396GQG1 | 66.049 | 162 | 35 | 1 | 10 | 151 | 111 | 272 | 4.10e-62 | 204 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047825.01 | MsG0780041101.01 | 0.818574 | 1.826058e-52 | 1.371959e-49 |
| MsG0080047959.01 | MsG0780041101.01 | 0.807239 | 5.570228e-50 | 3.086567e-47 |
| MsG0080048683.01 | MsG0780041101.01 | 0.817590 | 3.047609e-52 | 2.228633e-49 |
| MsG0080048928.01 | MsG0780041101.01 | 0.802893 | 4.518502e-49 | 2.239236e-46 |
| MsG0180000271.01 | MsG0780041101.01 | 0.824845 | 6.474064e-54 | 5.802299e-51 |
| MsG0180000546.01 | MsG0780041101.01 | 0.813499 | 2.481264e-51 | 1.623136e-48 |
| MsG0180000550.01 | MsG0780041101.01 | 0.858501 | 7.888868e-63 | 2.017526e-59 |
| MsG0180000669.01 | MsG0780041101.01 | 0.837699 | 4.456488e-57 | 5.836180e-54 |
| MsG0180000680.01 | MsG0780041101.01 | 0.806928 | 6.483405e-50 | 3.563506e-47 |
| MsG0180000777.01 | MsG0780041101.01 | 0.812328 | 4.480471e-51 | 2.840468e-48 |
| MsG0180001063.01 | MsG0780041101.01 | 0.820527 | 6.543368e-53 | 5.190020e-50 |
| MsG0180001141.01 | MsG0780041101.01 | 0.833201 | 6.109249e-56 | 6.986028e-53 |
| MsG0180001663.01 | MsG0780041101.01 | 0.819936 | 8.939671e-53 | 6.975847e-50 |
| MsG0180001712.01 | MsG0780041101.01 | 0.818272 | 2.137379e-52 | 1.592512e-49 |
| MsG0180002459.01 | MsG0780041101.01 | 0.805698 | 1.177385e-49 | 6.271138e-47 |
| MsG0180002842.01 | MsG0780041101.01 | 0.802896 | 4.513091e-49 | 2.236714e-46 |
| MsG0180003189.01 | MsG0780041101.01 | 0.802550 | 5.319920e-49 | 2.613347e-46 |
| MsG0180003952.01 | MsG0780041101.01 | 0.842840 | 2.022661e-58 | 3.105369e-55 |
| MsG0180004765.01 | MsG0780041101.01 | 0.816349 | 5.790751e-52 | 4.093416e-49 |
| MsG0180004824.01 | MsG0780041101.01 | 0.817593 | 3.043382e-52 | 2.225709e-49 |
| MsG0180004926.01 | MsG0780041101.01 | 0.817700 | 2.877944e-52 | 2.110990e-49 |
| MsG0180005050.01 | MsG0780041101.01 | 0.810950 | 8.931778e-51 | 5.458657e-48 |
| MsG0180005763.01 | MsG0780041101.01 | 0.810407 | 1.170313e-50 | 7.048522e-48 |
| MsG0180005960.01 | MsG0780041101.01 | 0.821901 | 3.155145e-53 | 2.600770e-50 |
| MsG0180006138.01 | MsG0780041101.01 | 0.832089 | 1.153587e-55 | 1.276085e-52 |
| MsG0180006220.01 | MsG0780041101.01 | 0.833085 | 6.529166e-56 | 7.440715e-53 |
| MsG0280006406.01 | MsG0780041101.01 | 0.802413 | 5.677458e-49 | 2.779432e-46 |
| MsG0280006411.01 | MsG0780041101.01 | 0.826794 | 2.230657e-54 | 2.113297e-51 |
| MsG0780040596.01 | MsG0780041101.01 | 0.824838 | 6.495729e-54 | 5.820626e-51 |
| MsG0780040734.01 | MsG0780041101.01 | 0.814516 | 1.480601e-51 | 9.956154e-49 |
| MsG0780041015.01 | MsG0780041101.01 | -0.813041 | 3.128532e-51 | 2.021106e-48 |
| MsG0780041101.01 | MsG0780041294.01 | 0.811100 | 8.287266e-51 | 5.084455e-48 |
| MsG0780041101.01 | MsG0780041441.01 | 0.813643 | 2.307229e-51 | 1.515128e-48 |
| MsG0780041101.01 | MsG0780041456.01 | 0.812609 | 3.889977e-51 | 2.484455e-48 |
| MsG0780041101.01 | MsG0780041475.01 | 0.803785 | 2.954115e-49 | 1.497821e-46 |
| MsG0780041101.01 | MsG0780041507.01 | 0.857278 | 1.819834e-62 | 4.467233e-59 |
| MsG0780041101.01 | MsG0880042053.01 | 0.819273 | 1.266609e-52 | 9.701811e-50 |
| MsG0780041101.01 | MsG0880042107.01 | 0.840427 | 8.755076e-58 | 1.246629e-54 |
| MsG0780041101.01 | MsG0880042108.01 | 0.806603 | 7.593746e-50 | 4.138979e-47 |
| MsG0780041101.01 | MsG0880043059.01 | 0.814055 | 1.872135e-51 | 1.243176e-48 |
| MsG0780041101.01 | MsG0880043454.01 | 0.817911 | 2.579018e-52 | 1.902658e-49 |
| MsG0780041101.01 | MsG0880043509.01 | 0.832327 | 1.007170e-55 | 1.121905e-52 |
| MsG0780041101.01 | MsG0880044573.01 | 0.800636 | 1.313023e-48 | 6.144640e-46 |
| MsG0780041101.01 | MsG0880044728.01 | 0.838081 | 3.553000e-57 | 4.707067e-54 |
| MsG0780041101.01 | MsG0880045362.01 | 0.831091 | 2.031356e-55 | 2.181830e-52 |
| MsG0780041101.01 | MsG0880045535.01 | 0.806524 | 7.887414e-50 | 4.290502e-47 |
| MsG0780041101.01 | MsG0880045736.01 | 0.800250 | 1.574087e-48 | 7.294431e-46 |
| MsG0780041101.01 | MsG0880045894.01 | 0.813862 | 2.065095e-51 | 1.364166e-48 |
| MsG0780041101.01 | MsG0880045937.01 | 0.819693 | 1.015550e-52 | 7.870710e-50 |
| MsG0780041101.01 | MsG0880046091.01 | 0.824782 | 6.698992e-54 | 5.993150e-51 |
| MsG0780041101.01 | MsG0880046122.01 | 0.801677 | 8.043895e-49 | 3.864607e-46 |
| MsG0780041101.01 | MsG0880046285.01 | 0.813843 | 2.084863e-51 | 1.376499e-48 |
| MsG0780041101.01 | MsG0880046321.01 | 0.801482 | 8.820473e-49 | 4.217032e-46 |
| MsG0780041101.01 | MsG0880046425.01 | 0.814206 | 1.733714e-51 | 1.155964e-48 |
| MsG0780041101.01 | MsG0880046620.01 | 0.802242 | 6.157900e-49 | 3.001404e-46 |
| MsG0780041101.01 | MsG0880046973.01 | 0.812088 | 5.053711e-51 | 3.183042e-48 |
| MsG0780041101.01 | MsG0880047052.01 | 0.813747 | 2.188398e-51 | 1.441105e-48 |
| MsG0780041101.01 | MsG0880047294.01 | 0.819288 | 1.256608e-52 | 9.629006e-50 |
| MsG0280010980.01 | MsG0780041101.01 | 0.802752 | 4.831971e-49 | 2.386051e-46 |
| MsG0280011141.01 | MsG0780041101.01 | 0.813162 | 2.943187e-51 | 1.907484e-48 |
| MsG0280011163.01 | MsG0780041101.01 | 0.808122 | 3.617134e-50 | 2.051060e-47 |
| MsG0280011175.01 | MsG0780041101.01 | 0.826447 | 2.699981e-54 | 2.532735e-51 |
| MsG0280011371.01 | MsG0780041101.01 | 0.804552 | 2.044925e-49 | 1.057456e-46 |
| MsG0280011376.01 | MsG0780041101.01 | 0.823142 | 1.624163e-53 | 1.386901e-50 |
| MsG0380011704.01 | MsG0780041101.01 | 0.835022 | 2.136939e-56 | 2.580648e-53 |
| MsG0380011895.01 | MsG0780041101.01 | 0.856903 | 2.348356e-62 | 5.692007e-59 |
| MsG0380013853.01 | MsG0780041101.01 | 0.816455 | 5.482234e-52 | 3.886195e-49 |
| MsG0380014248.01 | MsG0780041101.01 | 0.813857 | 2.069840e-51 | 1.367108e-48 |
| MsG0380014296.01 | MsG0780041101.01 | 0.806357 | 8.555759e-50 | 4.634145e-47 |
| MsG0380014548.01 | MsG0780041101.01 | 0.831124 | 1.993760e-55 | 2.143497e-52 |
| MsG0380014770.01 | MsG0780041101.01 | 0.837095 | 6.360851e-57 | 8.175759e-54 |
| MsG0680031262.01 | MsG0780041101.01 | 0.807518 | 4.860367e-50 | 2.712855e-47 |
| MsG0680031334.01 | MsG0780041101.01 | 0.814911 | 1.210713e-51 | 8.227638e-49 |
| MsG0680031538.01 | MsG0780041101.01 | 0.804354 | 2.248521e-49 | 1.156865e-46 |
| MsG0680033391.01 | MsG0780041101.01 | 0.800523 | 1.385170e-48 | 6.463504e-46 |
| MsG0680034739.01 | MsG0780041101.01 | 0.800237 | 1.583961e-48 | 7.337732e-46 |
| MsG0680035278.01 | MsG0780041101.01 | 0.810848 | 9.397746e-51 | 5.727395e-48 |
| MsG0480018883.01 | MsG0780041101.01 | 0.800554 | 1.364550e-48 | 6.372530e-46 |
| MsG0480019373.01 | MsG0780041101.01 | 0.815997 | 6.939549e-52 | 4.858301e-49 |
| MsG0480019970.01 | MsG0780041101.01 | 0.807489 | 4.929647e-50 | 2.749447e-47 |
| MsG0480021041.01 | MsG0780041101.01 | 0.808681 | 2.748735e-50 | 1.581591e-47 |
| MsG0480021061.01 | MsG0780041101.01 | 0.840839 | 6.828766e-58 | 9.849016e-55 |
| MsG0480021164.01 | MsG0780041101.01 | 0.834778 | 2.461896e-56 | 2.951128e-53 |
| MsG0480021280.01 | MsG0780041101.01 | 0.804100 | 2.539623e-49 | 1.298143e-46 |
| MsG0480021750.01 | MsG0780041101.01 | 0.820581 | 6.358684e-53 | 5.050959e-50 |
| MsG0480021853.01 | MsG0780041101.01 | 0.822231 | 2.645689e-53 | 2.201408e-50 |
| MsG0480021925.01 | MsG0780041101.01 | 0.801944 | 7.090009e-49 | 3.429468e-46 |
| MsG0480021994.01 | MsG0780041101.01 | 0.823042 | 1.713459e-53 | 1.459069e-50 |
| MsG0480022035.01 | MsG0780041101.01 | 0.809091 | 2.245425e-50 | 1.306217e-47 |
| MsG0480022068.01 | MsG0780041101.01 | 0.804435 | 2.163471e-49 | 1.115376e-46 |
| MsG0480022222.01 | MsG0780041101.01 | 0.812865 | 3.418447e-51 | 2.197944e-48 |
| MsG0480022768.01 | MsG0780041101.01 | 0.811554 | 6.607806e-51 | 4.102774e-48 |
| MsG0480022933.01 | MsG0780041101.01 | 0.818440 | 1.957852e-52 | 1.465756e-49 |
| MsG0480022986.01 | MsG0780041101.01 | 0.812012 | 5.251100e-51 | 3.300468e-48 |
| MsG0480023270.01 | MsG0780041101.01 | 0.804435 | 2.163041e-49 | 1.115166e-46 |
| MsG0480023638.01 | MsG0780041101.01 | 0.801865 | 7.361160e-49 | 3.553707e-46 |
| MsG0480023776.01 | MsG0780041101.01 | 0.803492 | 3.397326e-49 | 1.709641e-46 |
| MsG0480023994.01 | MsG0780041101.01 | 0.808672 | 2.760683e-50 | 1.588108e-47 |
| MsG0580024114.01 | MsG0780041101.01 | 0.815333 | 9.754503e-52 | 6.705991e-49 |
| MsG0580024472.01 | MsG0780041101.01 | 0.833406 | 5.430699e-56 | 6.248309e-53 |
| MsG0580024495.01 | MsG0780041101.01 | 0.832355 | 9.912664e-56 | 1.105215e-52 |
| MsG0580025448.01 | MsG0780041101.01 | 0.839327 | 1.692983e-57 | 2.330033e-54 |
| MsG0580025621.01 | MsG0780041101.01 | 0.810970 | 8.846109e-51 | 5.409053e-48 |
| MsG0580025638.01 | MsG0780041101.01 | 0.810516 | 1.108891e-50 | 6.697918e-48 |
| MsG0380015164.01 | MsG0780041101.01 | 0.802570 | 5.269897e-49 | 2.590049e-46 |
| MsG0380015166.01 | MsG0780041101.01 | 0.805151 | 1.533347e-49 | 8.052642e-47 |
| MsG0380015934.01 | MsG0780041101.01 | 0.801001 | 1.106501e-48 | 5.226641e-46 |
| MsG0380015965.01 | MsG0780041101.01 | 0.807609 | 4.648690e-50 | 2.600712e-47 |
| MsG0380016581.01 | MsG0780041101.01 | 0.804234 | 2.382361e-49 | 1.221860e-46 |
| MsG0380016624.01 | MsG0780041101.01 | 0.813691 | 2.251392e-51 | 1.480398e-48 |
| MsG0380016910.01 | MsG0780041101.01 | 0.801247 | 9.850717e-49 | 4.681825e-46 |
| MsG0380017126.01 | MsG0780041101.01 | 0.807882 | 4.067662e-50 | 2.291878e-47 |
| MsG0380017335.01 | MsG0780041101.01 | 0.803863 | 2.845021e-49 | 1.445453e-46 |
| MsG0380017461.01 | MsG0780041101.01 | 0.813543 | 2.426806e-51 | 1.589400e-48 |
| MsG0380017498.01 | MsG0780041101.01 | 0.814846 | 1.251608e-51 | 8.490961e-49 |
| MsG0380017551.01 | MsG0780041101.01 | -0.823435 | 1.387151e-53 | 1.194231e-50 |
| MsG0380017589.01 | MsG0780041101.01 | 0.801599 | 8.346043e-49 | 4.001728e-46 |
| MsG0380017680.01 | MsG0780041101.01 | 0.853216 | 2.766151e-61 | 5.932830e-58 |
| MsG0380017888.01 | MsG0780041101.01 | 0.802917 | 4.467355e-49 | 2.215241e-46 |
| MsG0480018163.01 | MsG0780041101.01 | 0.814402 | 1.568788e-51 | 1.051667e-48 |
| MsG0580026137.01 | MsG0780041101.01 | 0.817847 | 2.667212e-52 | 1.964305e-49 |
| MsG0580026340.01 | MsG0780041101.01 | 0.803883 | 2.817710e-49 | 1.432319e-46 |
| MsG0580026439.01 | MsG0780041101.01 | 0.801224 | 9.959445e-49 | 4.730703e-46 |
| MsG0580027034.01 | MsG0780041101.01 | 0.847816 | 9.102622e-60 | 1.637540e-56 |
| MsG0580027361.01 | MsG0780041101.01 | 0.816108 | 6.555119e-52 | 4.603140e-49 |
| MsG0580028072.01 | MsG0780041101.01 | 0.804660 | 1.942075e-49 | 1.007083e-46 |
| MsG0580029008.01 | MsG0780041101.01 | 0.802775 | 4.779607e-49 | 2.361601e-46 |
| MsG0580029594.01 | MsG0780041101.01 | 0.819611 | 1.060769e-52 | 8.201939e-50 |
| MsG0580029704.01 | MsG0780041101.01 | 0.801517 | 8.676156e-49 | 4.151693e-46 |
| MsG0580029826.01 | MsG0780041101.01 | 0.808242 | 3.409263e-50 | 1.939416e-47 |
| MsG0580030204.01 | MsG0780041101.01 | 0.801791 | 7.619836e-49 | 3.671593e-46 |
| MsG0680030415.01 | MsG0780041101.01 | 0.815683 | 8.152184e-52 | 5.658607e-49 |
| MsG0680030636.01 | MsG0780041101.01 | 0.809412 | 1.916219e-50 | 1.124354e-47 |
| MsG0280006491.01 | MsG0780041101.01 | 0.817206 | 3.718504e-52 | 2.690805e-49 |
| MsG0280006554.01 | MsG0780041101.01 | 0.816874 | 4.416251e-52 | 3.167014e-49 |
| MsG0280006708.01 | MsG0780041101.01 | 0.810439 | 1.152353e-50 | 6.946033e-48 |
| MsG0280007547.01 | MsG0780041101.01 | 0.848059 | 7.802749e-60 | 1.414291e-56 |
| MsG0280007636.01 | MsG0780041101.01 | 0.812269 | 4.615794e-51 | 2.921572e-48 |
| MsG0280007714.01 | MsG0780041101.01 | 0.802274 | 6.064034e-49 | 2.958090e-46 |
| MsG0280008613.01 | MsG0780041101.01 | 0.826075 | 3.310233e-54 | 3.072323e-51 |
| MsG0280009024.01 | MsG0780041101.01 | 0.803722 | 3.043536e-49 | 1.540631e-46 |
| MsG0280009395.01 | MsG0780041101.01 | -0.818868 | 1.565360e-52 | 1.185778e-49 |
| MsG0280010443.01 | MsG0780041101.01 | 0.806950 | 6.412243e-50 | 3.526480e-47 |
| MsG0680035844.01 | MsG0780041101.01 | 0.807764 | 4.310359e-50 | 2.421204e-47 |
| MsG0780035948.01 | MsG0780041101.01 | 0.813323 | 2.712644e-51 | 1.765970e-48 |
| MsG0780035957.01 | MsG0780041101.01 | 0.831211 | 1.898104e-55 | 2.045877e-52 |
| MsG0780037082.01 | MsG0780041101.01 | 0.850044 | 2.190331e-60 | 4.235915e-57 |
| MsG0780037512.01 | MsG0780041101.01 | 0.824323 | 8.589403e-54 | 7.582695e-51 |
| MsG0780038092.01 | MsG0780041101.01 | 0.801455 | 8.931275e-49 | 4.267062e-46 |
| MsG0780038401.01 | MsG0780041101.01 | 0.800469 | 1.420385e-48 | 6.618691e-46 |
| MsG0780038906.01 | MsG0780041101.01 | 0.802777 | 4.774994e-49 | 2.359453e-46 |
| MsG0780039143.01 | MsG0780041101.01 | 0.822239 | 2.634833e-53 | 2.192828e-50 |
| MsG0780039144.01 | MsG0780041101.01 | 0.800608 | 1.330968e-48 | 6.224040e-46 |
| MsG0780039943.01 | MsG0780041101.01 | 0.801268 | 9.757612e-49 | 4.639913e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041101.01.T01 | MTR_4g051480 | 42.308 | 156 | 55 | 5 | 18 | 151 | 680 | 822 | 2.86e-25 | 102 |
| MsG0780041101.01.T01 | MTR_4g092300 | 42.308 | 156 | 55 | 5 | 18 | 151 | 662 | 804 | 3.17e-25 | 102 |
| MsG0780041101.01.T01 | MTR_8g085310 | 42.675 | 157 | 57 | 7 | 18 | 151 | 540 | 686 | 4.83e-22 | 93.6 |
| MsG0780041101.01.T01 | MTR_2g017975 | 95.238 | 42 | 2 | 0 | 158 | 199 | 8 | 49 | 2.94e-21 | 86.7 |
| MsG0780041101.01.T01 | MTR_3g053640 | 35.443 | 158 | 69 | 3 | 5 | 151 | 275 | 410 | 2.47e-19 | 85.5 |
| MsG0780041101.01.T01 | MTR_1g094760 | 40.940 | 149 | 53 | 4 | 25 | 151 | 544 | 679 | 6.96e-17 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 44 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAAGCGTGGAAAAGTTTA+AGG | 0.170460 | 7:-86605627 | MsG0780041101.01.T01:CDS |
| CTTTGAAATTGTGCAGCTTT+GGG | 0.268536 | 7:+86606148 | None:intergenic |
| TCTTTGAAATTGTGCAGCTT+TGG | 0.278538 | 7:+86606147 | None:intergenic |
| AGCATGGGCTCAAGTTTCTT+TGG | 0.334501 | 7:-86605776 | MsG0780041101.01.T01:CDS |
| ATGTGATGTAGACTCCTTCT+TGG | 0.355967 | 7:+86605819 | None:intergenic |
| ATGATATGCATATATCATTC+AGG | 0.382004 | 7:-86606176 | MsG0780041101.01.T01:CDS |
| GTGTGACCAGACAAGCTTGC+TGG | 0.397928 | 7:-86606120 | MsG0780041101.01.T01:CDS |
| TTATTTCCAGCAAGCTTGTC+TGG | 0.399671 | 7:+86606114 | None:intergenic |
| TCATCATTCATCTACCAATC+TGG | 0.425023 | 7:-86606060 | MsG0780041101.01.T01:CDS |
| AGCTGCACAATTTCAAAGAA+AGG | 0.430753 | 7:-86606143 | MsG0780041101.01.T01:CDS |
| TTTCTTTGGTAAGAGCTGAT+AGG | 0.431958 | 7:-86605762 | MsG0780041101.01.T01:CDS |
| AAAAGTTTAAGGATTCTGAT+TGG | 0.433232 | 7:-86605616 | MsG0780041101.01.T01:CDS |
| CATACGAGCTCATCCCTTCA+AGG | 0.437361 | 7:+86605244 | None:intergenic |
| GACATTTCAGATGATTCCTA+TGG | 0.446146 | 7:-86605649 | MsG0780041101.01.T01:CDS |
| AACGAGGTTCCTAACCTTGA+AGG | 0.452298 | 7:-86605258 | MsG0780041101.01.T01:CDS |
| GAGCTCATCCCTTCAAGGTT+AGG | 0.453636 | 7:+86605249 | None:intergenic |
| TGTTGATATTATTTCCAGAT+TGG | 0.454507 | 7:+86606046 | None:intergenic |
| AAGTGTGTGGCTGCTCTCGA+TGG | 0.472530 | 7:-86605679 | MsG0780041101.01.T01:CDS |
| ATAGGAATCATCTTAGAGAT+AGG | 0.479459 | 7:-86605170 | MsG0780041101.01.T01:CDS |
| CTGATAGGTTAAGAAGGGAT+AGG | 0.484536 | 7:-86605747 | MsG0780041101.01.T01:CDS |
| GTTTAAGGATTCTGATTGGA+GGG | 0.496068 | 7:-86605612 | MsG0780041101.01.T01:CDS |
| ATCATCTTAGAGATAGGATG+TGG | 0.498557 | 7:-86605164 | MsG0780041101.01.T01:CDS |
| GAATGAGGCACTTGCAGCAT+GGG | 0.501641 | 7:-86605791 | MsG0780041101.01.T01:CDS |
| TAAGAGCTGATAGGTTAAGA+AGG | 0.504282 | 7:-86605753 | MsG0780041101.01.T01:CDS |
| TTAACAAGGTTATCTGATGA+AGG | 0.516699 | 7:-86605213 | MsG0780041101.01.T01:CDS |
| GCTGCACAATTTCAAAGAAA+GGG | 0.529794 | 7:-86606142 | MsG0780041101.01.T01:CDS |
| AAGAGCTGATAGGTTAAGAA+GGG | 0.537119 | 7:-86605752 | MsG0780041101.01.T01:CDS |
| CACTCACAGTGAAAAGCGAC+AGG | 0.557370 | 7:-86605854 | MsG0780041101.01.T01:CDS |
| TGATGAAGGTGCAGCTGAGA+TGG | 0.559464 | 7:-86605199 | MsG0780041101.01.T01:CDS |
| AGTTTAAGGATTCTGATTGG+AGG | 0.570217 | 7:-86605613 | MsG0780041101.01.T01:CDS |
| ATCGAGAGCAGCCACACACT+TGG | 0.570899 | 7:+86605681 | None:intergenic |
| CAGCTGAGATGGCAATGGAT+AGG | 0.572746 | 7:-86605188 | MsG0780041101.01.T01:CDS |
| AGTGTGTGGCTGCTCTCGAT+GGG | 0.579630 | 7:-86605678 | MsG0780041101.01.T01:CDS |
| CGTATGTTGAAAACTTAACA+AGG | 0.583345 | 7:-86605227 | MsG0780041101.01.T01:CDS |
| TACATCACATCATATGAATG+AGG | 0.591772 | 7:-86605806 | MsG0780041101.01.T01:CDS |
| TGAATGAGGCACTTGCAGCA+TGG | 0.593350 | 7:-86605792 | MsG0780041101.01.T01:CDS |
| TTGTTCTCTTACCAAGTGTG+TGG | 0.604130 | 7:-86605692 | MsG0780041101.01.T01:CDS |
| ACGAGGTTCCTAACCTTGAA+GGG | 0.611095 | 7:-86605257 | MsG0780041101.01.T01:CDS |
| AAAACTTGAGGCGGTGAACG+AGG | 0.615754 | 7:-86605274 | MsG0780041101.01.T01:intron |
| GGTTCATGTGAGATCCAAGA+AGG | 0.621915 | 7:-86605833 | MsG0780041101.01.T01:CDS |
| ATGATTCCTATGGAAAAGCG+TGG | 0.626741 | 7:-86605639 | MsG0780041101.01.T01:CDS |
| AGGTGCAGCTGAGATGGCAA+TGG | 0.647281 | 7:-86605193 | MsG0780041101.01.T01:CDS |
| AAGAAGGGATAGGAGTGCAG+AGG | 0.647414 | 7:-86605737 | MsG0780041101.01.T01:CDS |
| TCATCTTAGAGATAGGATGT+GGG | 0.679475 | 7:-86605163 | MsG0780041101.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTTATCTAGTATTTGTAT+AGG | - | Chr7:86605854-86605873 | MsG0780041101.01.T01:CDS | 20.0% |
| !! | TATACAAATACTAGATAAGT+AGG | + | Chr7:86605855-86605874 | None:intergenic | 20.0% |
| ! | AAAAGTTTAAGGATTCTGAT+TGG | - | Chr7:86605706-86605725 | MsG0780041101.01.T01:CDS | 25.0% |
| ! | ATGATATGCATATATCATTC+AGG | - | Chr7:86605146-86605165 | MsG0780041101.01.T01:CDS | 25.0% |
| ! | ATGATCAATACATCAACAAT+GGG | - | Chr7:86605374-86605393 | MsG0780041101.01.T01:intron | 25.0% |
| ! | TAACTGATATTGAAAACTTG+AGG | - | Chr7:86606036-86606055 | MsG0780041101.01.T01:CDS | 25.0% |
| ! | TAGAGAAGTAAACAATCATA+AGG | + | Chr7:86605882-86605901 | None:intergenic | 25.0% |
| ! | TATGATCAATACATCAACAA+TGG | - | Chr7:86605373-86605392 | MsG0780041101.01.T01:intron | 25.0% |
| ! | TGTTGATATTATTTCCAGAT+TGG | + | Chr7:86605279-86605298 | None:intergenic | 25.0% |
| !! | TTTATGTTACTTAGTATGAC+AGG | - | Chr7:86606004-86606023 | MsG0780041101.01.T01:intron | 25.0% |
| AATACATCAACAATGGGAAT+GGG | - | Chr7:86605380-86605399 | MsG0780041101.01.T01:intron | 30.0% | |
| ACTAGAACCTAAACAAATAC+AGG | + | Chr7:86605799-86605818 | None:intergenic | 30.0% | |
| ATAGGAATCATCTTAGAGAT+AGG | - | Chr7:86606152-86606171 | MsG0780041101.01.T01:CDS | 30.0% | |
| ATCAACAAAAACAATGCAAC+TGG | - | Chr7:86605292-86605311 | MsG0780041101.01.T01:intron | 30.0% | |
| CGTATGTTGAAAACTTAACA+AGG | - | Chr7:86606095-86606114 | MsG0780041101.01.T01:CDS | 30.0% | |
| CTCGATAAGAGGAAAATAAA+AGG | + | Chr7:86605968-86605987 | None:intergenic | 30.0% | |
| GATGTAACCTGTATTTGTTT+AGG | - | Chr7:86605789-86605808 | MsG0780041101.01.T01:CDS | 30.0% | |
| TAATCATGTGCATGTTGATA+AGG | - | Chr7:86605408-86605427 | MsG0780041101.01.T01:intron | 30.0% | |
| TACATCACATCATATGAATG+AGG | - | Chr7:86605516-86605535 | MsG0780041101.01.T01:intron | 30.0% | |
| TTAACAAGGTTATCTGATGA+AGG | - | Chr7:86606109-86606128 | MsG0780041101.01.T01:CDS | 30.0% | |
| TTCAACAAAAACAATGCAAC+TGG | - | Chr7:86605233-86605252 | MsG0780041101.01.T01:CDS | 30.0% | |
| AAAACACGATACTCGATAAG+AGG | + | Chr7:86605979-86605998 | None:intergenic | 35.0% | |
| AAGAGCTGATAGGTTAAGAA+GGG | - | Chr7:86605570-86605589 | MsG0780041101.01.T01:intron | 35.0% | |
| AGCTGCACAATTTCAAAGAA+AGG | - | Chr7:86605179-86605198 | MsG0780041101.01.T01:CDS | 35.0% | |
| AGTTTAAGGATTCTGATTGG+AGG | - | Chr7:86605709-86605728 | MsG0780041101.01.T01:CDS | 35.0% | |
| ATCATCTTAGAGATAGGATG+TGG | - | Chr7:86606158-86606177 | MsG0780041101.01.T01:CDS | 35.0% | |
| CAATACATCAACAATGGGAA+TGG | - | Chr7:86605379-86605398 | MsG0780041101.01.T01:intron | 35.0% | |
| CTGATATTGAAAACTTGAGG+CGG | - | Chr7:86606039-86606058 | MsG0780041101.01.T01:CDS | 35.0% | |
| GACATTTCAGATGATTCCTA+TGG | - | Chr7:86605673-86605692 | MsG0780041101.01.T01:CDS | 35.0% | |
| GCTGCACAATTTCAAAGAAA+GGG | - | Chr7:86605180-86605199 | MsG0780041101.01.T01:CDS | 35.0% | |
| GTTTAAGGATTCTGATTGGA+GGG | - | Chr7:86605710-86605729 | MsG0780041101.01.T01:CDS | 35.0% | |
| TAAGAGCTGATAGGTTAAGA+AGG | - | Chr7:86605569-86605588 | MsG0780041101.01.T01:intron | 35.0% | |
| TCATCATTCATCTACCAATC+TGG | - | Chr7:86605262-86605281 | MsG0780041101.01.T01:CDS | 35.0% | |
| TCATCTTAGAGATAGGATGT+GGG | - | Chr7:86606159-86606178 | MsG0780041101.01.T01:CDS | 35.0% | |
| TTTCTTTGGTAAGAGCTGAT+AGG | - | Chr7:86605560-86605579 | MsG0780041101.01.T01:intron | 35.0% | |
| ! | GAAAAGCGTGGAAAAGTTTA+AGG | - | Chr7:86605695-86605714 | MsG0780041101.01.T01:CDS | 35.0% |
| !! | CTTTGAAATTGTGCAGCTTT+GGG | + | Chr7:86605177-86605196 | None:intergenic | 35.0% |
| !! | TCTTTGAAATTGTGCAGCTT+TGG | + | Chr7:86605178-86605197 | None:intergenic | 35.0% |
| ATGATTCCTATGGAAAAGCG+TGG | - | Chr7:86605683-86605702 | MsG0780041101.01.T01:CDS | 40.0% | |
| ATGTGATGTAGACTCCTTCT+TGG | + | Chr7:86605506-86605525 | None:intergenic | 40.0% | |
| CTGATAGGTTAAGAAGGGAT+AGG | - | Chr7:86605575-86605594 | MsG0780041101.01.T01:intron | 40.0% | |
| TTATTTCCAGCAAGCTTGTC+TGG | + | Chr7:86605211-86605230 | None:intergenic | 40.0% | |
| TTGTTCTCTTACCAAGTGTG+TGG | - | Chr7:86605630-86605649 | MsG0780041101.01.T01:CDS | 40.0% | |
| TTTCGTCATCTGTGTTTGGT+GGG | + | Chr7:86605345-86605364 | None:intergenic | 40.0% | |
| ! | ACTTTTCCACGCTTTTCCAT+AGG | + | Chr7:86605692-86605711 | None:intergenic | 40.0% |
| ! | TCGTTTTCGTCATCTGTGTT+TGG | + | Chr7:86605349-86605368 | None:intergenic | 40.0% |
| ! | TTTTCGTCATCTGTGTTTGG+TGG | + | Chr7:86605346-86605365 | None:intergenic | 40.0% |
| AACGAGGTTCCTAACCTTGA+AGG | - | Chr7:86606064-86606083 | MsG0780041101.01.T01:CDS | 45.0% | |
| ACGAGGTTCCTAACCTTGAA+GGG | - | Chr7:86606065-86606084 | MsG0780041101.01.T01:CDS | 45.0% | |
| AGCATGGGCTCAAGTTTCTT+TGG | - | Chr7:86605546-86605565 | MsG0780041101.01.T01:intron | 45.0% | |
| GGTTCATGTGAGATCCAAGA+AGG | - | Chr7:86605489-86605508 | MsG0780041101.01.T01:intron | 45.0% | |
| TTATCGCCATGCCTAATGAG+AGG | - | Chr7:86605738-86605757 | MsG0780041101.01.T01:CDS | 45.0% | |
| ! | ATCTGTGTTTGGTGGGTCTT+GGG | + | Chr7:86605338-86605357 | None:intergenic | 45.0% |
| ! | TAATGAGAGGAAGCGTGGAT+GGG | - | Chr7:86605751-86605770 | MsG0780041101.01.T01:CDS | 45.0% |
| AAAACTTGAGGCGGTGAACG+AGG | - | Chr7:86606048-86606067 | MsG0780041101.01.T01:CDS | 50.0% | |
| ACGCTTCCTCTCATTAGGCA+TGG | + | Chr7:86605747-86605766 | None:intergenic | 50.0% | |
| ATGCCTAATGAGAGGAAGCG+TGG | - | Chr7:86605746-86605765 | MsG0780041101.01.T01:CDS | 50.0% | |
| CACTCACAGTGAAAAGCGAC+AGG | - | Chr7:86605468-86605487 | MsG0780041101.01.T01:intron | 50.0% | |
| CAGCTGAGATGGCAATGGAT+AGG | - | Chr7:86606134-86606153 | MsG0780041101.01.T01:CDS | 50.0% | |
| CATACGAGCTCATCCCTTCA+AGG | + | Chr7:86606081-86606100 | None:intergenic | 50.0% | |
| CATCCACGCTTCCTCTCATT+AGG | + | Chr7:86605752-86605771 | None:intergenic | 50.0% | |
| GAGCTCATCCCTTCAAGGTT+AGG | + | Chr7:86606076-86606095 | None:intergenic | 50.0% | |
| GGATGGGTACTTAGGCTCTA+AGG | - | Chr7:86605767-86605786 | MsG0780041101.01.T01:CDS | 50.0% | |
| ! | AAGAAGGGATAGGAGTGCAG+AGG | - | Chr7:86605585-86605604 | MsG0780041101.01.T01:intron | 50.0% |
| ! | CATCTGTGTTTGGTGGGTCT+TGG | + | Chr7:86605339-86605358 | None:intergenic | 50.0% |
| ! | CTAATGAGAGGAAGCGTGGA+TGG | - | Chr7:86605750-86605769 | MsG0780041101.01.T01:CDS | 50.0% |
| ! | GAATGAGGCACTTGCAGCAT+GGG | - | Chr7:86605531-86605550 | MsG0780041101.01.T01:intron | 50.0% |
| ! | TGAATGAGGCACTTGCAGCA+TGG | - | Chr7:86605530-86605549 | MsG0780041101.01.T01:intron | 50.0% |
| ! | TGATGAAGGTGCAGCTGAGA+TGG | - | Chr7:86606123-86606142 | MsG0780041101.01.T01:CDS | 50.0% |
| AAGTGTGTGGCTGCTCTCGA+TGG | - | Chr7:86605643-86605662 | MsG0780041101.01.T01:CDS | 55.0% | |
| AGGTGCAGCTGAGATGGCAA+TGG | - | Chr7:86606129-86606148 | MsG0780041101.01.T01:CDS | 55.0% | |
| AGTGTGTGGCTGCTCTCGAT+GGG | - | Chr7:86605644-86605663 | MsG0780041101.01.T01:CDS | 55.0% | |
| ATCGAGAGCAGCCACACACT+TGG | + | Chr7:86605644-86605663 | None:intergenic | 55.0% | |
| GTGTGACCAGACAAGCTTGC+TGG | - | Chr7:86605202-86605221 | MsG0780041101.01.T01:CDS | 55.0% | |
| ! | GGAAGCGTGGATGGGTACTT+AGG | - | Chr7:86605759-86605778 | MsG0780041101.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 86605146 | 86606198 | 86605146 | ID=MsG0780041101.01;Name=MsG0780041101.01 |
| Chr7 | mRNA | 86605146 | 86606198 | 86605146 | ID=MsG0780041101.01.T01;Parent=MsG0780041101.01;Name=MsG0780041101.01.T01;_AED=0.49;_eAED=0.66;_QI=0|0|0|1|0.5|0.33|3|0|203 |
| Chr7 | exon | 86606029 | 86606198 | 86606029 | ID=MsG0780041101.01.T01:exon:52075;Parent=MsG0780041101.01.T01 |
| Chr7 | exon | 86605609 | 86605909 | 86605609 | ID=MsG0780041101.01.T01:exon:52074;Parent=MsG0780041101.01.T01 |
| Chr7 | exon | 86605146 | 86605286 | 86605146 | ID=MsG0780041101.01.T01:exon:52073;Parent=MsG0780041101.01.T01 |
| Chr7 | CDS | 86606029 | 86606198 | 86606029 | ID=MsG0780041101.01.T01:cds;Parent=MsG0780041101.01.T01 |
| Chr7 | CDS | 86605609 | 86605909 | 86605609 | ID=MsG0780041101.01.T01:cds;Parent=MsG0780041101.01.T01 |
| Chr7 | CDS | 86605146 | 86605286 | 86605146 | ID=MsG0780041101.01.T01:cds;Parent=MsG0780041101.01.T01 |
| Gene Sequence |
| Protein sequence |
