AlfalfaGEDB | MsG0680030597.01

M. sativa cultivar ZhongmuNo.1 / MsG0680030597.01

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030597.01.T01	XP_013450842.1	80.488	123	5	2	7	114	240	358	5.87E-58	193
MsG0680030597.01.T02	XP_013450842.1	96.875	64	2	0	33	96	240	303	2.22E-34	131
MsG0680030597.01.T03	XP_014517470.1	92.188	64	5	0	1	64	184	247	3.80E-38	140

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030597.01.T01	Q9FL07	54.918	122	35	4	10	114	223	341	4.00E-30	113
MsG0680030597.01.T02	Q9FL07	68.182	66	18	2	36	98	223	288	5.68E-21	88.2
MsG0680030597.01.T03	Q9FL07	75	56	13	1	1	55	161	216	1.05E-22	91.7

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030597.01.T01	A0A072U5F9	80.488	123	5	2	7	114	240	358	2.80e-58	193
MsG0680030597.01.T02	A0A072U5F9	96.875	64	2	0	33	96	240	303	1.06e-34	131
MsG0680030597.01.T03	A0A1S3VGS0	92.188	64	5	0	1	64	184	247	1.81e-38	140

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047825.01	MsG0680030597.01	0.805979	1.027685e-49	5.513240e-47
MsG0080047959.01	MsG0680030597.01	0.824335	8.535446e-54	7.537550e-51
MsG0080048618.01	MsG0680030597.01	0.802627	5.129507e-49	2.524785e-46
MsG0080048683.01	MsG0680030597.01	0.806427	8.270318e-50	4.487647e-47
MsG0080048764.01	MsG0680030597.01	0.812424	4.270350e-51	2.714285e-48
MsG0080048856.01	MsG0680030597.01	0.808391	3.169718e-50	1.810186e-47
MsG0080048874.01	MsG0680030597.01	0.818957	1.494835e-52	1.135193e-49
MsG0080048892.01	MsG0680030597.01	0.817540	3.127872e-52	2.284275e-49
MsG0180000335.01	MsG0680030597.01	0.809190	2.139145e-50	1.247698e-47
MsG0180000470.01	MsG0680030597.01	0.843883	1.065116e-58	1.690092e-55
MsG0180000550.01	MsG0680030597.01	0.821358	4.212050e-53	3.419074e-50
MsG0180000669.01	MsG0680030597.01	0.829106	6.196139e-55	6.279909e-52
MsG0180000828.01	MsG0680030597.01	0.816425	5.567668e-52	3.943598e-49
MsG0180001063.01	MsG0680030597.01	0.826585	2.502363e-54	2.356439e-51
MsG0180001141.01	MsG0680030597.01	0.810029	1.412151e-50	8.421960e-48
MsG0180001663.01	MsG0680030597.01	0.819744	9.887494e-53	7.674162e-50
MsG0180002842.01	MsG0680030597.01	0.811145	8.104751e-51	4.978227e-48
MsG0180002894.01	MsG0680030597.01	0.813161	2.944616e-51	1.908382e-48
MsG0180002952.01	MsG0680030597.01	0.816799	4.591102e-52	3.285328e-49
MsG0180003669.01	MsG0680030597.01	0.803698	3.079665e-49	1.557953e-46
MsG0180003673.01	MsG0680030597.01	0.833909	4.068474e-56	4.752566e-53
MsG0180003686.01	MsG0680030597.01	0.825770	3.909840e-54	3.597783e-51
MsG0180003854.01	MsG0680030597.01	0.826440	2.710392e-54	2.542021e-51
MsG0180003952.01	MsG0680030597.01	0.816586	5.124267e-52	3.645625e-49
MsG0180004388.01	MsG0680030597.01	0.813858	2.068990e-51	1.366574e-48
MsG0180004675.01	MsG0680030597.01	0.806131	9.546316e-50	5.141133e-47
MsG0180004765.01	MsG0680030597.01	0.803062	4.169436e-49	2.075026e-46
MsG0180004926.01	MsG0680030597.01	0.818025	2.430231e-52	1.798509e-49
MsG0180005050.01	MsG0680030597.01	0.844021	9.780543e-59	1.558600e-55
MsG0180005371.01	MsG0680030597.01	0.803565	3.281013e-49	1.654271e-46
MsG0180005842.01	MsG0680030597.01	0.804099	2.541678e-49	1.299140e-46
MsG0180005960.01	MsG0680030597.01	0.822640	2.125553e-53	1.789485e-50
MsG0280006356.01	MsG0680030597.01	0.804332	2.272356e-49	1.168443e-46
MsG0280010900.01	MsG0680030597.01	0.802233	6.184065e-49	3.013444e-46
MsG0280011032.01	MsG0680030597.01	0.819588	1.073529e-52	8.295966e-50
MsG0280011070.01	MsG0680030597.01	0.816329	5.848840e-52	4.132313e-49
MsG0280011217.01	MsG0680030597.01	0.800923	1.147522e-48	5.409528e-46
MsG0280011376.01	MsG0680030597.01	0.829590	4.727357e-55	4.859949e-52
MsG0380011609.01	MsG0680030597.01	0.804445	2.153427e-49	1.110480e-46
MsG0380011895.01	MsG0680030597.01	0.813035	3.137598e-51	2.026678e-48
MsG0380013834.01	MsG0680030597.01	0.817028	4.078038e-52	2.936753e-49
MsG0380014177.01	MsG0680030597.01	0.814163	1.772408e-51	1.180404e-48
MsG0380014251.01	MsG0680030597.01	0.806416	8.315792e-50	4.510911e-47
MsG0380014573.01	MsG0680030597.01	0.827208	1.775739e-54	1.702914e-51
MsG0380014770.01	MsG0680030597.01	0.806041	9.973347e-50	5.358739e-47
MsG0480018883.01	MsG0680030597.01	0.806341	8.622382e-50	4.668371e-47
MsG0480018964.01	MsG0680030597.01	0.834865	2.341192e-56	2.814005e-53
MsG0480018970.01	MsG0680030597.01	0.800021	1.752562e-48	8.074313e-46
MsG0480019373.01	MsG0680030597.01	0.828597	8.231342e-55	8.219306e-52
MsG0480019435.01	MsG0680030597.01	0.803094	4.107518e-49	2.045833e-46
MsG0480019970.01	MsG0680030597.01	0.821900	3.157852e-53	2.602882e-50
MsG0480020634.01	MsG0680030597.01	0.826670	2.388781e-54	2.255113e-51
MsG0480020839.01	MsG0680030597.01	0.816808	4.568083e-52	3.269789e-49
MsG0480021164.01	MsG0680030597.01	0.813887	2.038466e-51	1.347535e-48
MsG0480021215.01	MsG0680030597.01	0.811689	6.175167e-51	3.847693e-48
MsG0480021274.01	MsG0680030597.01	0.822419	2.392579e-53	2.001636e-50
MsG0480021489.01	MsG0680030597.01	0.801732	7.836480e-49	3.770221e-46
MsG0480021536.01	MsG0680030597.01	0.810582	1.073120e-50	6.493447e-48
MsG0480021853.01	MsG0680030597.01	0.839212	1.813380e-57	2.486995e-54
MsG0480021925.01	MsG0680030597.01	0.836197	1.077816e-56	1.348740e-53
MsG0480022068.01	MsG0680030597.01	0.824329	8.562502e-54	7.560292e-51
MsG0480022213.01	MsG0680030597.01	-0.802895	4.515096e-49	2.237656e-46
MsG0480022222.01	MsG0680030597.01	0.840121	1.052467e-57	1.484567e-54
MsG0480022259.01	MsG0680030597.01	0.830770	2.435018e-55	2.590720e-52
MsG0480022262.01	MsG0680030597.01	0.830974	2.170086e-55	2.322763e-52
MsG0480022707.01	MsG0680030597.01	0.809011	2.336430e-50	1.356167e-47
MsG0480022768.01	MsG0680030597.01	0.808030	3.784367e-50	2.140622e-47
MsG0480022985.01	MsG0680030597.01	0.813703	2.238309e-51	1.472277e-48
MsG0480022986.01	MsG0680030597.01	0.834555	2.801229e-56	3.336164e-53
MsG0480023145.01	MsG0680030597.01	0.812811	3.514227e-51	2.256237e-48
MsG0480023427.01	MsG0680030597.01	0.812905	3.351543e-51	2.157314e-48
MsG0480023503.01	MsG0680030597.01	0.803457	3.454280e-49	1.736711e-46
MsG0480023654.01	MsG0680030597.01	0.815933	7.170856e-52	5.011403e-49
MsG0480023670.01	MsG0680030597.01	0.803441	3.480405e-49	1.749121e-46
MsG0480023718.01	MsG0680030597.01	0.804366	2.236161e-49	1.150839e-46
MsG0480024005.01	MsG0680030597.01	0.813622	2.331283e-51	1.530085e-48
MsG0580024114.01	MsG0680030597.01	0.809651	1.702691e-50	1.005427e-47
MsG0580024304.01	MsG0680030597.01	0.802457	5.561051e-49	2.725377e-46
MsG0580024363.01	MsG0680030597.01	-0.802505	5.433496e-49	2.666166e-46
MsG0580024472.01	MsG0680030597.01	0.811327	7.400884e-51	4.567479e-48
MsG0580024495.01	MsG0680030597.01	0.818866	1.567130e-52	1.187061e-49
MsG0580025008.01	MsG0680030597.01	0.800678	1.287463e-48	6.031440e-46
MsG0580025022.01	MsG0680030597.01	0.829937	3.892619e-55	4.042370e-52
MsG0580025149.01	MsG0680030597.01	0.804199	2.422342e-49	1.241300e-46
MsG0580025448.01	MsG0680030597.01	0.834077	3.692686e-56	4.334704e-53
MsG0580025621.01	MsG0680030597.01	0.813848	2.079117e-51	1.372908e-48
MsG0580025758.01	MsG0680030597.01	0.811341	7.347351e-51	4.536178e-48
MsG0580025816.01	MsG0680030597.01	0.800179	1.627536e-48	7.528382e-46
MsG0380014948.01	MsG0680030597.01	0.807668	4.517904e-50	2.531412e-47
MsG0380015164.01	MsG0680030597.01	0.814293	1.658939e-51	1.108791e-48
MsG0380015166.01	MsG0680030597.01	0.802694	4.967417e-49	2.449262e-46
MsG0380015566.01	MsG0680030597.01	0.819829	9.454280e-53	7.355314e-50
MsG0380015779.01	MsG0680030597.01	0.821101	4.829513e-53	3.892571e-50
MsG0380016004.01	MsG0680030597.01	0.803885	2.815225e-49	1.431148e-46
MsG0380016064.01	MsG0680030597.01	0.814887	1.225532e-51	8.322857e-49
MsG0380016910.01	MsG0680030597.01	0.826781	2.247114e-54	2.128046e-51
MsG0380017140.01	MsG0680030597.01	0.831468	1.640914e-55	1.782349e-52
MsG0380017461.01	MsG0680030597.01	0.810051	1.396582e-50	8.333655e-48
MsG0380017498.01	MsG0680030597.01	0.829892	3.990925e-55	4.139388e-52
MsG0380017551.01	MsG0680030597.01	-0.809576	1.767740e-50	1.041740e-47
MsG0380017584.01	MsG0680030597.01	0.823406	1.409317e-53	1.212242e-50
MsG0380017680.01	MsG0680030597.01	0.839931	1.179371e-57	1.653741e-54
MsG0380017746.01	MsG0680030597.01	0.809823	1.563868e-50	9.276267e-48
MsG0380018009.01	MsG0680030597.01	0.842251	2.897908e-58	4.368058e-55
MsG0480018163.01	MsG0680030597.01	0.835757	1.393337e-56	1.720239e-53
MsG0480018183.01	MsG0680030597.01	0.809532	1.806459e-50	1.063287e-47
MsG0480018331.01	MsG0680030597.01	0.800752	1.243641e-48	5.836946e-46
MsG0580026726.01	MsG0680030597.01	0.822753	2.001307e-53	1.690267e-50
MsG0580027833.01	MsG0680030597.01	0.811293	7.526596e-51	4.640997e-48
MsG0580027922.01	MsG0680030597.01	0.807747	4.346697e-50	2.440613e-47
MsG0580028479.01	MsG0680030597.01	0.810898	9.168673e-51	5.595322e-48
MsG0580028527.01	MsG0680030597.01	0.814455	1.527555e-51	1.025449e-48
MsG0580028901.01	MsG0680030597.01	0.805925	1.055073e-49	5.652176e-47
MsG0580028991.01	MsG0680030597.01	0.800107	1.682756e-48	7.769806e-46
MsG0580029008.01	MsG0680030597.01	0.830100	3.551161e-55	3.704961e-52
MsG0580029549.01	MsG0680030597.01	0.800755	1.242061e-48	5.829867e-46
MsG0580029762.01	MsG0680030597.01	0.801759	7.737952e-49	3.725280e-46
MsG0580029826.01	MsG0680030597.01	0.802342	5.871928e-49	2.869404e-46
MsG0580029925.01	MsG0680030597.01	0.801619	8.267415e-49	3.966134e-46
MsG0680030316.01	MsG0680030597.01	0.805675	1.190394e-49	6.336390e-47
MsG0680030597.01	MsG0680030598.01	0.805968	1.033346e-49	5.541989e-47
MsG0680030597.01	MsG0680030636.01	0.805272	1.446048e-49	7.617663e-47
MsG0680030597.01	MsG0680030685.01	0.801074	1.068728e-48	5.057476e-46
MsG0680030597.01	MsG0680030880.01	0.813837	2.090734e-51	1.380179e-48
MsG0680030597.01	MsG0680031020.01	0.814431	1.546026e-51	1.037201e-48
MsG0680030597.01	MsG0680031262.01	0.812144	4.914461e-51	3.100070e-48
MsG0680030597.01	MsG0680031379.01	0.812294	4.557837e-51	2.886832e-48
MsG0680030597.01	MsG0680033619.01	0.813531	2.442377e-51	1.599047e-48
MsG0680030597.01	MsG0680035346.01	0.802333	5.896774e-49	2.880918e-46
MsG0680030597.01	MsG0680035573.01	0.810640	1.042568e-50	6.318421e-48
MsG0680030597.01	MsG0680035692.01	0.814813	1.272244e-51	8.623554e-49
MsG0680030597.01	MsG0680035704.01	0.804608	1.990498e-49	1.030814e-46
MsG0680030597.01	MsG0680035844.01	0.807500	4.903053e-50	2.735418e-47
MsG0680030597.01	MsG0780035948.01	0.823718	1.190980e-53	1.033776e-50
MsG0680030597.01	MsG0780036190.01	0.814913	1.209428e-51	8.219240e-49
MsG0680030597.01	MsG0780036438.01	0.802080	6.648312e-49	3.227040e-46
MsG0680030597.01	MsG0780036964.01	0.800318	1.524829e-48	7.078620e-46
MsG0680030597.01	MsG0780037082.01	0.812718	3.682157e-51	2.358526e-48
MsG0680030597.01	MsG0780037287.01	0.809871	1.527305e-50	9.070723e-48
MsG0680030597.01	MsG0780038391.01	0.823141	1.625322e-53	1.387853e-50
MsG0680030597.01	MsG0780038401.01	0.807303	5.398250e-50	2.996338e-47
MsG0680030597.01	MsG0780038443.01	0.803114	4.067373e-49	2.026975e-46
MsG0680030597.01	MsG0780038495.01	0.803667	3.125170e-49	1.579677e-46
MsG0680030597.01	MsG0780038836.01	0.800719	1.263226e-48	5.923802e-46
MsG0680030597.01	MsG0780038906.01	0.804020	2.638915e-49	1.346150e-46
MsG0680030597.01	MsG0780039143.01	0.802159	6.402486e-49	3.114077e-46
MsG0680030597.01	MsG0780039170.01	0.810398	1.175512e-50	7.078084e-48
MsG0680030597.01	MsG0780040044.01	0.803126	4.044659e-49	2.016252e-46
MsG0680030597.01	MsG0780040057.01	0.805167	1.521017e-49	7.991317e-47
MsG0680030597.01	MsG0780040445.01	0.802004	6.891217e-49	3.338480e-46
MsG0680030597.01	MsG0780040576.01	-0.813216	2.863977e-51	1.858888e-48
MsG0680030597.01	MsG0780040591.01	0.824574	7.499572e-54	6.669250e-51
MsG0680030597.01	MsG0780040596.01	0.831786	1.370171e-55	1.502540e-52
MsG0680030597.01	MsG0780040704.01	0.810505	1.115111e-50	6.733574e-48
MsG0680030597.01	MsG0780040726.01	0.812697	3.721285e-51	2.382292e-48
MsG0680030597.01	MsG0780040734.01	0.811362	7.270281e-51	4.491206e-48
MsG0680030597.01	MsG0780041456.01	0.839813	1.265947e-57	1.768524e-54
MsG0680030597.01	MsG0780041507.01	0.821038	4.994016e-53	4.018376e-50
MsG0680030597.01	MsG0880041836.01	0.806999	6.262901e-50	3.448674e-47
MsG0680030597.01	MsG0880042294.01	0.806027	1.004052e-49	5.392967e-47
MsG0680030597.01	MsG0880042314.01	0.811328	7.394953e-51	4.564059e-48
MsG0680030597.01	MsG0880042611.01	0.822790	1.961752e-53	1.658521e-50
MsG0680030597.01	MsG0880042698.01	0.802104	6.572973e-49	3.192368e-46
MsG0680030597.01	MsG0880042966.01	0.830625	2.643715e-55	2.800581e-52
MsG0680030597.01	MsG0880043002.01	0.800230	1.588972e-48	7.359588e-46
MsG0680030597.01	MsG0880043059.01	0.822875	1.874692e-53	1.588723e-50
MsG0680030597.01	MsG0880043172.01	0.814829	1.261918e-51	8.557150e-49
MsG0680030597.01	MsG0880043479.01	0.801710	7.920305e-49	3.808391e-46
MsG0680030597.01	MsG0880043509.01	0.809224	2.103576e-50	1.228060e-47
MsG0680030597.01	MsG0880044573.01	0.833609	4.835230e-56	5.596635e-53
MsG0680030597.01	MsG0880044574.01	0.828907	6.924795e-55	6.976905e-52
MsG0680030597.01	MsG0880044728.01	0.825911	3.621411e-54	3.345797e-51
MsG0680030597.01	MsG0880044996.01	0.809785	1.593688e-50	9.444017e-48
MsG0680030597.01	MsG0880045111.01	0.803179	3.944905e-49	1.969263e-46
MsG0680030597.01	MsG0880045133.01	0.806903	6.562248e-50	3.604559e-47
MsG0680030597.01	MsG0880045362.01	0.813057	3.102588e-51	2.005210e-48
MsG0680030597.01	MsG0880045736.01	0.817666	2.929083e-52	2.146521e-49
MsG0680030597.01	MsG0880045765.01	0.804046	2.606225e-49	1.330355e-46
MsG0680030597.01	MsG0880045895.01	0.810297	1.236170e-50	7.423540e-48
MsG0680030597.01	MsG0880045896.01	0.802000	6.903581e-49	3.344134e-46
MsG0680030597.01	MsG0880045937.01	0.815061	1.121395e-51	7.651787e-49
MsG0680030597.01	MsG0880046122.01	0.824652	7.187810e-54	6.406815e-51
MsG0680030597.01	MsG0880046285.01	0.815587	8.564763e-52	5.929210e-49
MsG0680030597.01	MsG0880046425.01	0.806346	8.602162e-50	4.657972e-47
MsG0680030597.01	MsG0880046479.01	0.824465	7.954461e-54	7.050820e-51
MsG0680030597.01	MsG0880046973.01	0.814611	1.410998e-51	9.511945e-49
MsG0680030597.01	MsG0880047019.01	0.806303	8.783301e-50	4.750918e-47
MsG0680030597.01	MsG0880047608.01	0.800130	1.665086e-48	7.692731e-46
MsG0280006491.01	MsG0680030597.01	0.804285	2.324845e-49	1.193987e-46
MsG0280006554.01	MsG0680030597.01	0.801211	1.001986e-48	4.757914e-46
MsG0280006770.01	MsG0680030597.01	0.812817	3.502215e-51	2.248933e-48
MsG0280007064.01	MsG0680030597.01	0.816279	6.001298e-52	4.234196e-49
MsG0280007066.01	MsG0680030597.01	0.819206	1.311674e-52	1.002871e-49
MsG0280007164.01	MsG0680030597.01	0.808006	3.828289e-50	2.164169e-47
MsG0280007547.01	MsG0680030597.01	0.822700	2.058260e-53	1.735729e-50
MsG0280007636.01	MsG0680030597.01	0.803681	3.104490e-49	1.569797e-46
MsG0280007727.01	MsG0680030597.01	0.802089	6.618615e-49	3.213470e-46
MsG0280008100.01	MsG0680030597.01	0.816258	6.068171e-52	4.278843e-49
MsG0280008112.01	MsG0680030597.01	0.805619	1.223177e-49	6.501298e-47
MsG0280008378.01	MsG0680030597.01	0.805742	1.152400e-49	6.145023e-47
MsG0280008613.01	MsG0680030597.01	0.801511	8.697809e-49	4.161465e-46
MsG0280008615.01	MsG0680030597.01	0.835658	1.476121e-56	1.816977e-53
MsG0280008894.01	MsG0680030597.01	0.822571	2.205780e-53	1.853440e-50
MsG0280009024.01	MsG0680030597.01	0.810998	8.722268e-51	5.337426e-48
MsG0280009383.01	MsG0680030597.01	0.802989	4.317389e-49	2.144661e-46
MsG0280009748.01	MsG0680030597.01	0.841192	5.514885e-58	8.040979e-55
MsG0280010443.01	MsG0680030597.01	0.835476	1.641086e-56	2.009068e-53

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030597.01.T01	MTR_6g007737	80.488	123	5	2	7	114	240	358	7.11e-62	193
MsG0680030597.01.T01	MTR_5g034790	46.903	113	43	3	17	113	229	340	7.86e-25	96.7
MsG0680030597.01.T01	MTR_4g106680	46.721	122	43	5	3	114	191	300	5.48e-21	85.5
MsG0680030597.01.T01	MTR_8g063660	45.455	121	41	3	17	112	185	305	3.39e-20	84.0
MsG0680030597.01.T02	MTR_6g007737	96.875	64	2	0	33	96	240	303	2.69e-38	131
MsG0680030597.01.T02	MTR_5g034790	57.407	54	22	1	43	96	229	281	7.91e-14	65.9
MsG0680030597.01.T02	MTR_4g106680	49.351	77	26	4	24	96	184	251	1.09e-11	59.3
MsG0680030597.01.T03	MTR_6g007737	94.030	67	4	0	1	67	177	243	6.15e-42	139
MsG0680030597.01.T03	MTR_8g063660	71.429	49	14	0	1	49	112	160	5.55e-22	86.3
MsG0680030597.01.T03	MTR_5g034790	76.923	39	8	1	2	39	161	199	2.91e-14	65.5
MsG0680030597.01.T03	MTR_4g106680	62.162	37	14	0	1	37	150	186	2.60e-12	59.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680030597.01.T01	AT5G40250	54.918	122	35	4	10	114	223	341	4.08e-31	113
MsG0680030597.01.T01	AT1G23980	47.115	104	53	1	12	113	225	328	8.19e-21	85.9
MsG0680030597.01.T02	AT5G40250	68.182	66	18	2	36	98	223	288	5.79e-22	88.2
MsG0680030597.01.T03	AT5G40250	75.000	56	13	1	1	55	161	216	1.07e-23	91.7
MsG0680030597.01.T03	AT1G23980	75.000	40	10	0	2	41	163	202	4.40e-14	65.1
MsG0680030597.01.T03	AT3G48030	77.419	31	7	0	1	31	225	255	5.54e-13	62.0
MsG0680030597.01.T03	AT3G48030	44.118	68	30	2	1	62	147	212	2.20e-11	57.0
MsG0680030597.01.T03	AT1G35330	48.214	56	27	1	2	57	148	201	5.04e-11	56.2
MsG0680030597.01.T03	AT2G18650	75.758	33	7	1	2	34	145	176	8.80e-11	55.8

Find 39 sgRNAs with CRISPR-Local

Find 47 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCTTGGCCATAACCAAATTT+TGG	0.157592	6:+5837992	None:intergenic
TATTCGATTTCGATGATCTT+AGG	0.158395	6:-5838397	MsG0680030597.01.T02:CDS
TGAAACAAGTAGTAGTAATT+TGG	0.295043	6:-5838218	MsG0680030597.01.T01:CDS
TTGAGGAAGTTGTTGATAAA+GGG	0.310918	6:-5838312	MsG0680030597.01.T01:CDS
GTTGAGGAAGTTGTTGATAA+AGG	0.336638	6:-5838313	MsG0680030597.01.T01:CDS
GTTATCAAAGGAATTGAAAA+TGG	0.356686	6:-5838092	MsG0680030597.01.T01:CDS
TTGAATTTCCCGAGTCGAAC+CGG	0.368984	6:+5838283	None:intergenic
AGAGGAACACTTCAAACTAA+TGG	0.369520	6:-5838440	MsG0680030597.01.T03:CDS
CTATTTCCAAAATTTGGTTA+TGG	0.370519	6:-5837998	MsG0680030597.01.T01:CDS
TGTAATGGAGAGAATGGATT+TGG	0.372483	6:-5838356	MsG0680030597.01.T02:CDS
ATTCGATTTCGATGATCTTA+GGG	0.431362	6:-5838396	MsG0680030597.01.T02:CDS
ATATAAGTTGTATAGATACT+TGG	0.434910	6:-5838493	MsG0680030597.01.T03:CDS
TGGTTGGAAATTCAGAGTTA+AGG	0.444801	6:-5838156	MsG0680030597.01.T01:intron
TGCAAGAAGATGTTATTCAA+TGG	0.469008	6:-5838194	MsG0680030597.01.T01:CDS
AGATCATCGAAATCGAATAT+CGG	0.475880	6:+5838401	None:intergenic
GCAAGAAGATGTTATTCAAT+GGG	0.479763	6:-5838193	MsG0680030597.01.T01:CDS
AATGGGATCTTATCAATATG+TGG	0.489833	6:-5838176	MsG0680030597.01.T01:CDS
TCTTTGTGTTGAGAGTGATT+TGG	0.490017	6:-5838063	MsG0680030597.01.T01:CDS
TGTCCTTGTAATGGAGAGAA+TGG	0.491168	6:-5838362	MsG0680030597.01.T02:CDS
AAGATTAGTAATGTTAGTAA+AGG	0.491990	6:-5838032	MsG0680030597.01.T01:CDS
GGTAGAGAGAATGAAGAAGT+AGG	0.494883	6:-5838241	MsG0680030597.01.T01:CDS
AATTTGGTTATGGCCAAGAA+AGG	0.496237	6:-5837988	MsG0680030597.01.T01:CDS
ATCAAAGGAATTGAAAATGG+TGG	0.506466	6:-5838089	MsG0680030597.01.T01:CDS
GGATCTTATCAATATGTGGT+TGG	0.530819	6:-5838172	MsG0680030597.01.T01:CDS
GATGATCTTAGGGAAGATGA+TGG	0.535942	6:-5838386	MsG0680030597.01.T02:CDS
TGAGGAAGTTGTTGATAAAG+GGG	0.540146	6:-5838311	MsG0680030597.01.T01:CDS
GATGATGGTTGTCCTTGTAA+TGG	0.542547	6:-5838371	MsG0680030597.01.T02:CDS
TCAAAGGAATTGAAAATGGT+GGG	0.548623	6:-5838088	MsG0680030597.01.T01:CDS
AATCCATTCTCTCCATTACA+AGG	0.564226	6:+5838359	None:intergenic
TGAAGTGTTCCTCTACAAAG+AGG	0.570614	6:+5838449	None:intergenic
AGACAAAAGAATTGTTGTTG+AGG	0.584696	6:-5838329	MsG0680030597.01.T01:CDS
GAAATTCAAGAAGACGAATG+TGG	0.607434	6:-5838269	MsG0680030597.01.T01:CDS
CATGATACAAGGGTTATCAA+AGG	0.608541	6:-5838104	MsG0680030597.01.T01:intron
TACAACTTATATGAAAAGCA+TGG	0.613483	6:+5838504	None:intergenic
TGAAAAGCATGGCTACACAT+AGG	0.613953	6:+5838515	None:intergenic
TTGGAAATTCAGAGTTAAGG+TGG	0.621031	6:-5838153	MsG0680030597.01.T01:intron
AAGAAGACGAATGTGGAAGT+CGG	0.638238	6:-5838262	MsG0680030597.01.T01:CDS
TCTACATGTCCTCTTTGTAG+AGG	0.648357	6:-5838458	MsG0680030597.01.T03:CDS
TGTGTTGAGAGTGATTTGGA+AGG	0.653262	6:-5838059	MsG0680030597.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAGATTAGTAATGTTAGTAA+AGG	-	Chr6:5838445-5838464	MsG0680030597.01.T03:CDS	20.0%
!!	ATATAAGTTGTATAGATACT+TGG	-	Chr6:5837984-5838003	MsG0680030597.01.T01:CDS	20.0%
!!!	GTTTTTCTATTTCCAAAATT+TGG	-	Chr6:5838473-5838492	MsG0680030597.01.T03:CDS	20.0%
!	CTATTTCCAAAATTTGGTTA+TGG	-	Chr6:5838479-5838498	MsG0680030597.01.T03:CDS	25.0%
!	GTTATCAAAGGAATTGAAAA+TGG	-	Chr6:5838385-5838404	MsG0680030597.01.T02:CDS	25.0%
!	TACAACTTATATGAAAAGCA+TGG	+	Chr6:5837976-5837995	None:intergenic	25.0%
!	TAGAATTCATCATGATACAA+GGG	-	Chr6:5838363-5838382	MsG0680030597.01.T02:CDS	25.0%
!	TGAAACAAGTAGTAGTAATT+TGG	-	Chr6:5838259-5838278	MsG0680030597.01.T01:CDS	25.0%
!!	AGAAGAAAATTTTCCTTTCT+TGG	+	Chr6:5838505-5838524	None:intergenic	25.0%
	AATGGGATCTTATCAATATG+TGG	-	Chr6:5838301-5838320	MsG0680030597.01.T01:CDS	30.0%
	AATTCTACTCTCATGGTTTA+AGG	+	Chr6:5838350-5838369	None:intergenic	30.0%
	AGATCATCGAAATCGAATAT+CGG	+	Chr6:5838079-5838098	None:intergenic	30.0%
	ATCAAAGGAATTGAAAATGG+TGG	-	Chr6:5838388-5838407	MsG0680030597.01.T02:CDS	30.0%
	ATTCGATTTCGATGATCTTA+GGG	-	Chr6:5838081-5838100	MsG0680030597.01.T01:CDS	30.0%
	GCAAGAAGATGTTATTCAAT+GGG	-	Chr6:5838284-5838303	MsG0680030597.01.T01:CDS	30.0%
	GTAGAATTCATCATGATACA+AGG	-	Chr6:5838362-5838381	MsG0680030597.01.T02:CDS	30.0%
	TATTCGATTTCGATGATCTT+AGG	-	Chr6:5838080-5838099	MsG0680030597.01.T01:CDS	30.0%
	TCAAAGGAATTGAAAATGGT+GGG	-	Chr6:5838389-5838408	MsG0680030597.01.T02:CDS	30.0%
	TGCAAGAAGATGTTATTCAA+TGG	-	Chr6:5838283-5838302	MsG0680030597.01.T01:CDS	30.0%
!	AGACAAAAGAATTGTTGTTG+AGG	-	Chr6:5838148-5838167	MsG0680030597.01.T01:intron	30.0%
!	TTGAGGAAGTTGTTGATAAA+GGG	-	Chr6:5838165-5838184	MsG0680030597.01.T01:CDS	30.0%
	AATCCATTCTCTCCATTACA+AGG	+	Chr6:5838121-5838140	None:intergenic	35.0%
	AATTTGGTTATGGCCAAGAA+AGG	-	Chr6:5838489-5838508	MsG0680030597.01.T03:CDS	35.0%
	AGAGGAACACTTCAAACTAA+TGG	-	Chr6:5838037-5838056	MsG0680030597.01.T01:CDS	35.0%
	CATGATACAAGGGTTATCAA+AGG	-	Chr6:5838373-5838392	MsG0680030597.01.T02:CDS	35.0%
	CATGATGAATTCTACTCTCA+TGG	+	Chr6:5838357-5838376	None:intergenic	35.0%
	GAAATTCAAGAAGACGAATG+TGG	-	Chr6:5838208-5838227	MsG0680030597.01.T01:CDS	35.0%
	GGATCTTATCAATATGTGGT+TGG	-	Chr6:5838305-5838324	MsG0680030597.01.T01:CDS	35.0%
	TCTTTGTGTTGAGAGTGATT+TGG	-	Chr6:5838414-5838433	MsG0680030597.01.T02:CDS	35.0%
	TGGTTGGAAATTCAGAGTTA+AGG	-	Chr6:5838321-5838340	MsG0680030597.01.T01:CDS	35.0%
	TTGGAAATTCAGAGTTAAGG+TGG	-	Chr6:5838324-5838343	MsG0680030597.01.T01:CDS	35.0%
!	GTTGAGGAAGTTGTTGATAA+AGG	-	Chr6:5838164-5838183	MsG0680030597.01.T01:CDS	35.0%
!	TCTTGGCCATAACCAAATTT+TGG	+	Chr6:5838488-5838507	None:intergenic	35.0%
!	TGAGGAAGTTGTTGATAAAG+GGG	-	Chr6:5838166-5838185	MsG0680030597.01.T01:CDS	35.0%
!	TGTAATGGAGAGAATGGATT+TGG	-	Chr6:5838121-5838140	MsG0680030597.01.T01:intron	35.0%
	AAGAAGACGAATGTGGAAGT+CGG	-	Chr6:5838215-5838234	MsG0680030597.01.T01:CDS	40.0%
	GATGATCTTAGGGAAGATGA+TGG	-	Chr6:5838091-5838110	MsG0680030597.01.T01:CDS	40.0%
	GGTAGAGAGAATGAAGAAGT+AGG	-	Chr6:5838236-5838255	MsG0680030597.01.T01:CDS	40.0%
	TCTACATGTCCTCTTTGTAG+AGG	-	Chr6:5838019-5838038	MsG0680030597.01.T01:CDS	40.0%
!	GATGATGGTTGTCCTTGTAA+TGG	-	Chr6:5838106-5838125	MsG0680030597.01.T01:intron	40.0%
!	TGAAGTGTTCCTCTACAAAG+AGG	+	Chr6:5838031-5838050	None:intergenic	40.0%
!	TGTCCTTGTAATGGAGAGAA+TGG	-	Chr6:5838115-5838134	MsG0680030597.01.T01:intron	40.0%
!	TGTGTTGAGAGTGATTTGGA+AGG	-	Chr6:5838418-5838437	MsG0680030597.01.T02:CDS	40.0%
!!	TGTTGATAAAGGGGTTTTGC+CGG	-	Chr6:5838175-5838194	MsG0680030597.01.T01:CDS	40.0%
	TTGAATTTCCCGAGTCGAAC+CGG	+	Chr6:5838197-5838216	None:intergenic	45.0%
!!!	GGGGTTTTGCCGGTTCGACT+CGG	-	Chr6:5838185-5838204	MsG0680030597.01.T01:CDS	60.0%
!!!	GGGTTTTGCCGGTTCGACTC+GGG	-	Chr6:5838186-5838205	MsG0680030597.01.T01:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	5837965	5838534	5837965	ID=MsG0680030597.01;Name=MsG0680030597.01
Chr6	mRNA	5837965	5838365	5837965	ID=MsG0680030597.01.T01;Parent=MsG0680030597.01;Name=MsG0680030597.01.T01;_AED=0.41;_eAED=0.44;_QI=0\|0\|0\|1\|0\|0\|2\|0\|118
Chr6	exon	5837965	5838118	5837965	ID=MsG0680030597.01.T01:exon:5823;Parent=MsG0680030597.01.T01
Chr6	exon	5838163	5838365	5838163	ID=MsG0680030597.01.T01:exon:5822;Parent=MsG0680030597.01.T01
Chr6	CDS	5838163	5838365	5838163	ID=MsG0680030597.01.T01:cds;Parent=MsG0680030597.01.T01
Chr6	CDS	5837965	5838118	5837965	ID=MsG0680030597.01.T01:cds;Parent=MsG0680030597.01.T01
Chr6	mRNA	5838147	5838443	5838147	ID=MsG0680030597.01.T02;Parent=MsG0680030597.01;Name=MsG0680030597.01.T02;_AED=0.43;_eAED=0.43;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|98
Chr6	exon	5838147	5838443	5838147	ID=MsG0680030597.01.T02:exon:5824;Parent=MsG0680030597.01.T02
Chr6	CDS	5838147	5838443	5838147	ID=MsG0680030597.01.T02:cds;Parent=MsG0680030597.01.T02
Chr6	mRNA	5838331	5838534	5838331	ID=MsG0680030597.01.T03;Parent=MsG0680030597.01;Name=MsG0680030597.01.T03;_AED=0.45;_eAED=0.45;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|67
Chr6	exon	5838331	5838534	5838331	ID=MsG0680030597.01.T03:exon:5825;Parent=MsG0680030597.01.T03
Chr6	CDS	5838331	5838534	5838331	ID=MsG0680030597.01.T03:cds;Parent=MsG0680030597.01.T03

Gene Sequence

>MsG0680030597.01.T01

ATGGATTTGGTACTAGACAAAAGAATTGTTGTTGAGGAAGTTGTTGATAAAGGGGTTTTGCCGGTTCGACTCGGGAAATTCAAGAAGACGAATGTGGAAGTCGGTAGAGAGAATGAAGAAGTAGGTGAAACAAGTAGTAGTAATTTGGATGCAAGAAGATGTTATTCAATGGGATCTTATCAATATGTGGTTGGAAATTCAGAAAGGGTTATCAAAGGAATTGAAAATGGTGGGAATCTTTGTGTTGAGAGTGATTTGGAAGGAAAGAAGATTAGTAATGTTAGTAAAGGTGAAAGTTTTTCTATTTCCAAAATTTGGTTATGGCCAAGAAAGGAAAATTTTCTTCTAGTTCTTTAG

>MsG0680030597.01.T02

ATGGATTTTCTATTGAAAATCCGATATTCGATTTCGATGATCTTAGGGAAGATGATGGTTGTCCTTGTAATGGAGAGAATGGATTTGGTACTAGACAAAAGAATTGTTGTTGAGGAAGTTGTTGATAAAGGGGTTTTGCCGGTTCGACTCGGGAAATTCAAGAAGACGAATGTGGAAGTCGGTAGAGAGAATGAAGAAGTAGGTGAAACAAGTAGTAGTAATTTGGATGCAAGAAGATGTTATTCAATGGGATCTTATCAATATGTGGTTGGAAATTCAGAGTTAAGGTGGCCTTAA

>MsG0680030597.01.T03

ATGTGTAGCCATGCTTTTCATATAAGTTGTATAGATACTTGGCTACTTTCAAACTCTACATGTCCTCTTTGTAGAGGAACACTTCAAACTAATGGATTTTCTATTGAAAATCCGATATTCGATTTCGATGATCTTAGGGAAGATGATGGTTGTCCTTGTAATGGAGAGAATGGATTTGGTACTAGACAAAAGAATTGTTGTTGA

Protein sequence

>MsG0680030597.01.T01

MDLVLDKRIVVEEVVDKGVLPVRLGKFKKTNVEVGRENEEVGETSSSNLDARRCYSMGSYQYVVGNSERVIKGIENGGNLCVESDLEGKKISNVSKGESFSISKIWLWPRKENFLLVL*

>MsG0680030597.01.T02

MDFLLKIRYSISMILGKMMVVLVMERMDLVLDKRIVVEEVVDKGVLPVRLGKFKKTNVEVGRENEEVGETSSSNLDARRCYSMGSYQYVVGNSELRWP*

>MsG0680030597.01.T03

MCSHAFHISCIDTWLLSNSTCPLCRGTLQTNGFSIENPIFDFDDLREDDGCPCNGENGFGTRQKNCC*