Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009156.01.T01 | XP_013463905.2 | 97.059 | 272 | 5 | 2 | 1 | 271 | 5 | 274 | 0 | 532 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009156.01.T01 | O22227 | 52.542 | 177 | 73 | 4 | 104 | 271 | 123 | 297 | 1.13E-58 | 191 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009156.01.T01 | A0A396JCM5 | 97.059 | 272 | 5 | 2 | 1 | 271 | 5 | 274 | 0.0 | 532 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180005188.01 | MsG0280009156.01 | 0.818345 | 2.057674e-52 | 1.536405e-49 |
| MsG0180006000.01 | MsG0280009156.01 | 0.808263 | 3.375481e-50 | 1.921247e-47 |
| MsG0280007790.01 | MsG0280009156.01 | 0.800172 | 1.632925e-48 | 7.551879e-46 |
| MsG0280008614.01 | MsG0280009156.01 | 0.810930 | 9.023829e-51 | 5.511802e-48 |
| MsG0280009118.01 | MsG0280009156.01 | 0.897797 | 9.923237e-77 | 1.139388e-72 |
| MsG0280009156.01 | MsG0280009514.01 | 0.834642 | 2.664289e-56 | 3.180969e-53 |
| MsG0280009156.01 | MsG0280010779.01 | 0.832042 | 1.184444e-55 | 1.308545e-52 |
| MsG0280009156.01 | MsG0280011282.01 | 0.827154 | 1.830140e-54 | 1.752198e-51 |
| MsG0280009156.01 | MsG0380015548.01 | 0.830886 | 2.281579e-55 | 2.435775e-52 |
| MsG0280009156.01 | MsG0380016703.01 | 0.817591 | 3.045302e-52 | 2.227020e-49 |
| MsG0280009156.01 | MsG0380016994.01 | 0.812304 | 4.534645e-51 | 2.872852e-48 |
| MsG0280009156.01 | MsG0480018230.01 | 0.813344 | 2.683719e-51 | 1.748161e-48 |
| MsG0280009156.01 | MsG0480018256.01 | 0.800659 | 1.298931e-48 | 6.082345e-46 |
| MsG0280009156.01 | MsG0480021158.01 | 0.807901 | 4.031201e-50 | 2.272404e-47 |
| MsG0280009156.01 | MsG0480021705.01 | 0.836644 | 8.290503e-57 | 1.051162e-53 |
| MsG0280009156.01 | MsG0480022325.01 | 0.811889 | 5.585689e-51 | 3.498904e-48 |
| MsG0280009156.01 | MsG0480022331.01 | 0.812350 | 4.430928e-51 | 2.810729e-48 |
| MsG0280009156.01 | MsG0480022738.01 | 0.803887 | 2.812818e-49 | 1.429992e-46 |
| MsG0280009156.01 | MsG0480023421.01 | 0.812870 | 3.410795e-51 | 2.193304e-48 |
| MsG0280009156.01 | MsG0480023541.01 | 0.844635 | 6.692232e-59 | 1.087109e-55 |
| MsG0280009156.01 | MsG0480023620.01 | 0.825134 | 5.532581e-54 | 4.999702e-51 |
| MsG0280009156.01 | MsG0480023718.01 | 0.803312 | 3.701127e-49 | 1.853844e-46 |
| MsG0280009156.01 | MsG0580024035.01 | 0.816626 | 5.019645e-52 | 3.575103e-49 |
| MsG0280009156.01 | MsG0580026186.01 | 0.802803 | 4.717916e-49 | 2.332719e-46 |
| MsG0280009156.01 | MsG0580027208.01 | 0.815290 | 9.970735e-52 | 6.846600e-49 |
| MsG0280009156.01 | MsG0580027954.01 | 0.805014 | 1.637838e-49 | 8.571064e-47 |
| MsG0280009156.01 | MsG0580028060.01 | 0.820337 | 7.234199e-53 | 5.707954e-50 |
| MsG0280009156.01 | MsG0580029298.01 | 0.806763 | 7.022601e-50 | 3.843543e-47 |
| MsG0280009156.01 | MsG0680030679.01 | 0.804001 | 2.663946e-49 | 1.358232e-46 |
| MsG0280009156.01 | MsG0680030763.01 | 0.825269 | 5.138819e-54 | 4.661644e-51 |
| MsG0280009156.01 | MsG0680031384.01 | 0.812178 | 4.830787e-51 | 3.050087e-48 |
| MsG0280009156.01 | MsG0680031386.01 | 0.807744 | 4.352788e-50 | 2.443864e-47 |
| MsG0280009156.01 | MsG0780036752.01 | 0.806493 | 8.009995e-50 | 4.353674e-47 |
| MsG0280009156.01 | MsG0780039712.01 | 0.814010 | 1.915619e-51 | 1.270515e-48 |
| MsG0280009156.01 | MsG0880042552.01 | 0.805052 | 1.608045e-49 | 8.423538e-47 |
| MsG0280009156.01 | MsG0880042845.01 | 0.808481 | 3.031972e-50 | 1.735629e-47 |
| MsG0280009156.01 | MsG0880044075.01 | 0.801606 | 8.317420e-49 | 3.988816e-46 |
| MsG0280009156.01 | MsG0880044510.01 | 0.800070 | 1.712743e-48 | 7.900790e-46 |
| MsG0280009156.01 | MsG0880046762.01 | 0.832947 | 7.068826e-56 | 8.021711e-53 |
| MsG0280009156.01 | MsG0880047293.01 | 0.800423 | 1.451302e-48 | 6.755386e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009156.01.T01 | MTR_2g054380 | 97.059 | 272 | 5 | 2 | 1 | 271 | 1 | 270 | 0.0 | 531 |
| MsG0280009156.01.T01 | MTR_2g055990 | 55.263 | 266 | 106 | 4 | 9 | 271 | 4 | 259 | 5.83e-91 | 270 |
| MsG0280009156.01.T01 | MTR_4g112370 | 52.015 | 273 | 101 | 7 | 5 | 271 | 12 | 260 | 2.11e-89 | 266 |
| MsG0280009156.01.T01 | MTR_1g053130 | 55.556 | 180 | 69 | 3 | 101 | 271 | 107 | 284 | 1.09e-56 | 183 |
| MsG0280009156.01.T01 | MTR_3g094830 | 44.186 | 172 | 93 | 2 | 101 | 271 | 90 | 259 | 2.52e-52 | 171 |
| MsG0280009156.01.T01 | MTR_8g040690 | 48.795 | 166 | 81 | 2 | 107 | 271 | 85 | 247 | 2.41e-51 | 168 |
| MsG0280009156.01.T01 | MTR_8g040680 | 39.912 | 228 | 104 | 4 | 70 | 271 | 37 | 257 | 1.90e-49 | 164 |
| MsG0280009156.01.T01 | MTR_3g101300 | 50.000 | 166 | 75 | 3 | 111 | 270 | 72 | 235 | 2.33e-49 | 163 |
| MsG0280009156.01.T01 | MTR_7g064810 | 45.062 | 162 | 84 | 3 | 110 | 270 | 65 | 222 | 2.01e-40 | 140 |
| MsG0280009156.01.T01 | MTR_3g086740 | 34.667 | 225 | 132 | 6 | 55 | 270 | 24 | 242 | 2.56e-35 | 127 |
| MsG0280009156.01.T01 | MTR_8g089865 | 37.423 | 163 | 97 | 4 | 112 | 270 | 59 | 220 | 4.91e-33 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009156.01.T01 | AT3G25640 | 48.805 | 293 | 99 | 6 | 1 | 271 | 30 | 293 | 9.35e-81 | 245 |
| MsG0280009156.01.T01 | AT3G25640 | 48.805 | 293 | 99 | 6 | 1 | 271 | 4 | 267 | 1.19e-80 | 244 |
| MsG0280009156.01.T01 | AT5G23100 | 48.047 | 256 | 103 | 5 | 46 | 271 | 22 | 277 | 3.84e-70 | 218 |
| MsG0280009156.01.T01 | AT2G41660 | 52.542 | 177 | 73 | 4 | 104 | 271 | 123 | 297 | 1.16e-59 | 191 |
| MsG0280009156.01.T01 | AT2G21990 | 48.235 | 170 | 80 | 3 | 105 | 271 | 88 | 252 | 1.64e-54 | 177 |
| MsG0280009156.01.T01 | AT5G06990 | 48.588 | 177 | 82 | 2 | 103 | 271 | 86 | 261 | 1.08e-51 | 170 |
| MsG0280009156.01.T01 | AT4G39610 | 46.512 | 172 | 82 | 2 | 108 | 271 | 95 | 264 | 6.36e-51 | 168 |
| MsG0280009156.01.T01 | AT5G42680 | 54.938 | 162 | 68 | 4 | 111 | 270 | 78 | 236 | 3.19e-49 | 163 |
| MsG0280009156.01.T01 | AT5G42680 | 54.938 | 162 | 68 | 4 | 111 | 270 | 78 | 236 | 3.19e-49 | 163 |
| MsG0280009156.01.T01 | AT2G37880 | 47.929 | 169 | 83 | 3 | 106 | 270 | 77 | 244 | 3.54e-46 | 155 |
| MsG0280009156.01.T01 | AT1G21050 | 45.399 | 163 | 78 | 4 | 112 | 270 | 89 | 244 | 1.16e-40 | 141 |
| MsG0280009156.01.T01 | AT1G21050 | 45.399 | 163 | 78 | 4 | 112 | 270 | 125 | 280 | 1.20e-40 | 142 |
| MsG0280009156.01.T01 | AT5G65340 | 42.775 | 173 | 81 | 5 | 110 | 270 | 83 | 249 | 9.57e-38 | 134 |
| MsG0280009156.01.T01 | AT1G76610 | 43.713 | 167 | 79 | 4 | 106 | 270 | 72 | 225 | 3.07e-37 | 131 |
| MsG0280009156.01.T01 | AT2G22460 | 36.646 | 161 | 97 | 3 | 110 | 269 | 85 | 241 | 2.71e-31 | 116 |
Find 62 sgRNAs with CRISPR-Local
Find 73 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAAGTATGAGAGGGTTAT+TGG | 0.220635 | 2:-46529759 | MsG0280009156.01.T01:CDS |
| TTGGTTAGGGAAATGGCTTC+TGG | 0.285014 | 2:-46530029 | MsG0280009156.01.T01:CDS |
| AGTTGCTTGAAGAACCAATT+TGG | 0.286219 | 2:-46529953 | MsG0280009156.01.T01:CDS |
| AGTCATCTTGGAAAGCAAAA+TGG | 0.301808 | 2:+46530102 | None:intergenic |
| CAGCAATTTCTAATGGCATT+TGG | 0.314688 | 2:+46530258 | None:intergenic |
| TTACAATAAGACCTCCAAAT+TGG | 0.326088 | 2:+46529939 | None:intergenic |
| CTTCTTTCTCCTTCTCTAGA+AGG | 0.332135 | 2:-46530442 | MsG0280009156.01.T01:CDS |
| ACACCAGCACCCATTGAAAT+AGG | 0.337206 | 2:+46529843 | None:intergenic |
| TCCCTAACCAAAACACTTGT+TGG | 0.338137 | 2:+46530041 | None:intergenic |
| AGCAACACCAACAAGTGTTT+TGG | 0.352527 | 2:-46530048 | MsG0280009156.01.T01:CDS |
| TCAAGAGCAGCAATTTCTAA+TGG | 0.388276 | 2:+46530251 | None:intergenic |
| CTAAGTATGAGAGGGTTATT+GGG | 0.402385 | 2:-46529758 | MsG0280009156.01.T01:CDS |
| GGCTCAACTTTGAGTCATCT+TGG | 0.402943 | 2:+46530090 | None:intergenic |
| GAAAATGTGGTTATGCATAT+AGG | 0.413946 | 2:-46529911 | MsG0280009156.01.T01:CDS |
| AGCAAGTAAAGGCAGAGTTC+AGG | 0.432013 | 2:+46529684 | None:intergenic |
| GTCCACGACGGTATCCGAAA+AGG | 0.435618 | 2:+46530129 | None:intergenic |
| GCTAGCTCAATTAAGAATGT+AGG | 0.445992 | 2:+46530068 | None:intergenic |
| TCTCTAGAAGGTATTTCCAT+TGG | 0.449753 | 2:-46530430 | MsG0280009156.01.T01:CDS |
| TCAGGACCACCACTACCAAC+AGG | 0.456710 | 2:+46529702 | None:intergenic |
| ATTTGGAGGTCTTATTGTAA+TGG | 0.458861 | 2:-46529936 | MsG0280009156.01.T01:CDS |
| TGGAGTGTGAGAAGAAAGGA+GGG | 0.460730 | 2:-46529989 | MsG0280009156.01.T01:CDS |
| TCACCTCCATTCCCACTACT+TGG | 0.485738 | 2:+46529810 | None:intergenic |
| TTGGAGTGTGAGAAGAAAGG+AGG | 0.490295 | 2:-46529990 | MsG0280009156.01.T01:CDS |
| GGCTTTGGATGAAGATGATG+AGG | 0.491809 | 2:-46530399 | MsG0280009156.01.T01:CDS |
| TATTGTAATGGAAGAAAATG+TGG | 0.509766 | 2:-46529924 | MsG0280009156.01.T01:CDS |
| CTAGCTCAATTAAGAATGTA+GGG | 0.510058 | 2:+46530069 | None:intergenic |
| TGCTTGAAGAACCAATTTGG+AGG | 0.514952 | 2:-46529950 | MsG0280009156.01.T01:CDS |
| GTTAAACTCTAAGCAAGTAA+AGG | 0.515924 | 2:+46529673 | None:intergenic |
| AGCTGTGGAACCTATTTCAA+TGG | 0.524917 | 2:-46529853 | MsG0280009156.01.T01:CDS |
| TCCACGACGGTATCCGAAAA+GGG | 0.528553 | 2:+46530130 | None:intergenic |
| CGTTCACTTCACAGTTCTAG+TGG | 0.530900 | 2:-46530170 | MsG0280009156.01.T01:CDS |
| CCATTCCCACTACTTGGCAT+TGG | 0.536474 | 2:+46529816 | None:intergenic |
| GAACCTATTTCAATGGGTGC+TGG | 0.538761 | 2:-46529846 | MsG0280009156.01.T01:CDS |
| GCTGTGGAACCTATTTCAAT+GGG | 0.541783 | 2:-46529852 | MsG0280009156.01.T01:CDS |
| TGGAGTGGTGAGGATTGCAT+TGG | 0.543210 | 2:-46530009 | MsG0280009156.01.T01:CDS |
| GGGAATGGAGGTGAGTTTGA+AGG | 0.549280 | 2:-46529801 | MsG0280009156.01.T01:CDS |
| GCATTGGAGTGTGAGAAGAA+AGG | 0.552731 | 2:-46529993 | MsG0280009156.01.T01:CDS |
| TTCTAGTGGGACACGTATGG+TGG | 0.556842 | 2:-46530156 | MsG0280009156.01.T01:CDS |
| CCAATGCCAAGTAGTGGGAA+TGG | 0.559271 | 2:-46529816 | MsG0280009156.01.T01:CDS |
| ATGAACCCTGTTGGTAGTGG+TGG | 0.559559 | 2:-46529708 | MsG0280009156.01.T01:CDS |
| AGAAGAGTCATGTGGTGACT+TGG | 0.563167 | 2:+46530460 | None:intergenic |
| TATGAGAGCTAAGTATGAGA+GGG | 0.565675 | 2:-46529766 | MsG0280009156.01.T01:CDS |
| ATGGAAATACCTTCTAGAGA+AGG | 0.577098 | 2:+46530433 | None:intergenic |
| CAGTTCTAGTGGGACACGTA+TGG | 0.583654 | 2:-46530159 | MsG0280009156.01.T01:CDS |
| ATATGAGAGCTAAGTATGAG+AGG | 0.585257 | 2:-46529767 | MsG0280009156.01.T01:CDS |
| ATGATGAACCCTGTTGGTAG+TGG | 0.586626 | 2:-46529711 | MsG0280009156.01.T01:CDS |
| TTCTACATGATGAACCCTGT+TGG | 0.588457 | 2:-46529717 | MsG0280009156.01.T01:CDS |
| ATGGAAGATATTGAAAGCTG+TGG | 0.589180 | 2:-46529868 | MsG0280009156.01.T01:CDS |
| TAGGGAAATGGCTTCTGGAG+TGG | 0.612183 | 2:-46530024 | MsG0280009156.01.T01:CDS |
| ATGAATGTGGATCAGAGGAA+TGG | 0.616115 | 2:-46529887 | MsG0280009156.01.T01:CDS |
| TAGGCATGAATGTGGATCAG+AGG | 0.616854 | 2:-46529892 | MsG0280009156.01.T01:CDS |
| AAGGAGAAAGAAGAGTCATG+TGG | 0.646233 | 2:+46530452 | None:intergenic |
| GTTCACTTCACAGTTCTAGT+GGG | 0.646627 | 2:-46530169 | MsG0280009156.01.T01:CDS |
| TCTAGTGGGACACGTATGGT+GGG | 0.646952 | 2:-46530155 | MsG0280009156.01.T01:CDS |
| ATGCCAAGTAGTGGGAATGG+AGG | 0.656575 | 2:-46529813 | MsG0280009156.01.T01:CDS |
| TGTTGCCAATGCCAAGTAGT+GGG | 0.657243 | 2:-46529821 | MsG0280009156.01.T01:CDS |
| CAGGACCACCACTACCAACA+GGG | 0.658555 | 2:+46529703 | None:intergenic |
| AAATGGCTTCTGGAGTGGTG+AGG | 0.662532 | 2:-46530019 | MsG0280009156.01.T01:CDS |
| GTGTTGCCAATGCCAAGTAG+TGG | 0.663696 | 2:-46529822 | MsG0280009156.01.T01:CDS |
| TATGCATATAGGCATGAATG+TGG | 0.680421 | 2:-46529900 | MsG0280009156.01.T01:CDS |
| TGTTGGTGGTGAGAAAGAAG+AGG | 0.693894 | 2:-46530318 | MsG0280009156.01.T01:CDS |
| CAAAATGGACATGTCCACGA+CGG | 0.712176 | 2:+46530117 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTGTAATGGAAGAAAATG+TGG | - | Chr2:46530217-46530236 | MsG0280009156.01.T01:CDS | 25.0% |
| CTAGCTCAATTAAGAATGTA+GGG | + | Chr2:46530075-46530094 | None:intergenic | 30.0% | |
| GAAAATGTGGTTATGCATAT+AGG | - | Chr2:46530230-46530249 | MsG0280009156.01.T01:CDS | 30.0% | |
| GTATTTCCATTGGAAAAAGA+AGG | - | Chr2:46529721-46529740 | MsG0280009156.01.T01:CDS | 30.0% | |
| TTACAATAAGACCTCCAAAT+TGG | + | Chr2:46530205-46530224 | None:intergenic | 30.0% | |
| !! | ATTTGGAGGTCTTATTGTAA+TGG | - | Chr2:46530205-46530224 | MsG0280009156.01.T01:CDS | 30.0% |
| AGTCATCTTGGAAAGCAAAA+TGG | + | Chr2:46530042-46530061 | None:intergenic | 35.0% | |
| AGTTGCTTGAAGAACCAATT+TGG | - | Chr2:46530188-46530207 | MsG0280009156.01.T01:CDS | 35.0% | |
| ATATGAGAGCTAAGTATGAG+AGG | - | Chr2:46530374-46530393 | MsG0280009156.01.T01:CDS | 35.0% | |
| ATGGAAGATATTGAAAGCTG+TGG | - | Chr2:46530273-46530292 | MsG0280009156.01.T01:CDS | 35.0% | |
| CAGCAATTTCTAATGGCATT+TGG | + | Chr2:46529886-46529905 | None:intergenic | 35.0% | |
| CTAAGTATGAGAGGGTTATT+GGG | - | Chr2:46530383-46530402 | MsG0280009156.01.T01:CDS | 35.0% | |
| GCTAGCTCAATTAAGAATGT+AGG | + | Chr2:46530076-46530095 | None:intergenic | 35.0% | |
| TATGAGAGCTAAGTATGAGA+GGG | - | Chr2:46530375-46530394 | MsG0280009156.01.T01:CDS | 35.0% | |
| TATGCATATAGGCATGAATG+TGG | - | Chr2:46530241-46530260 | MsG0280009156.01.T01:CDS | 35.0% | |
| TCAAGAGCAGCAATTTCTAA+TGG | + | Chr2:46529893-46529912 | None:intergenic | 35.0% | |
| ! | ATGGAAATACCTTCTAGAGA+AGG | + | Chr2:46529711-46529730 | None:intergenic | 35.0% |
| ! | GATGATGATGATGATGATGT+TGG | - | Chr2:46529806-46529825 | MsG0280009156.01.T01:CDS | 35.0% |
| ! | TTCATCATCACATTTTCCTG+AGG | - | Chr2:46529784-46529803 | MsG0280009156.01.T01:CDS | 35.0% |
| !! | TCTCTAGAAGGTATTTCCAT+TGG | - | Chr2:46529711-46529730 | MsG0280009156.01.T01:CDS | 35.0% |
| !!! | AAGTGTTTTGGTTAGGGAAA+TGG | - | Chr2:46530105-46530124 | MsG0280009156.01.T01:CDS | 35.0% |
| !!! | ACCAACAAGTGTTTTGGTTA+GGG | - | Chr2:46530099-46530118 | MsG0280009156.01.T01:CDS | 35.0% |
| AAGGAGAAAGAAGAGTCATG+TGG | + | Chr2:46529692-46529711 | None:intergenic | 40.0% | |
| AGCTGTGGAACCTATTTCAA+TGG | - | Chr2:46530288-46530307 | MsG0280009156.01.T01:CDS | 40.0% | |
| ATGAATGTGGATCAGAGGAA+TGG | - | Chr2:46530254-46530273 | MsG0280009156.01.T01:CDS | 40.0% | |
| CCATTGGAAAAAGAAGGCTT+TGG | - | Chr2:46529727-46529746 | MsG0280009156.01.T01:CDS | 40.0% | |
| CTTCTTTCTCCTTCTCTAGA+AGG | - | Chr2:46529699-46529718 | MsG0280009156.01.T01:CDS | 40.0% | |
| GCTAAGTATGAGAGGGTTAT+TGG | - | Chr2:46530382-46530401 | MsG0280009156.01.T01:CDS | 40.0% | |
| GCTGTGGAACCTATTTCAAT+GGG | - | Chr2:46530289-46530308 | MsG0280009156.01.T01:CDS | 40.0% | |
| TCATCATCATCATCATCCTC+AGG | + | Chr2:46529803-46529822 | None:intergenic | 40.0% | |
| TCCCTAACCAAAACACTTGT+TGG | + | Chr2:46530103-46530122 | None:intergenic | 40.0% | |
| TGCTTGAAGAACCAATTTGG+AGG | - | Chr2:46530191-46530210 | MsG0280009156.01.T01:CDS | 40.0% | |
| TTCTACATGATGAACCCTGT+TGG | - | Chr2:46530424-46530443 | MsG0280009156.01.T01:CDS | 40.0% | |
| ! | AGCAACACCAACAAGTGTTT+TGG | - | Chr2:46530093-46530112 | MsG0280009156.01.T01:CDS | 40.0% |
| ! | CCAAAGCCTTCTTTTTCCAA+TGG | + | Chr2:46529730-46529749 | None:intergenic | 40.0% |
| ! | GATGATGATGATGATGTTGG+TGG | - | Chr2:46529809-46529828 | MsG0280009156.01.T01:CDS | 40.0% |
| ! | GTTCACTTCACAGTTCTAGT+GGG | - | Chr2:46529972-46529991 | MsG0280009156.01.T01:CDS | 40.0% |
| !!! | CACCAACAAGTGTTTTGGTT+AGG | - | Chr2:46530098-46530117 | MsG0280009156.01.T01:CDS | 40.0% |
| ACACCAGCACCCATTGAAAT+AGG | + | Chr2:46530301-46530320 | None:intergenic | 45.0% | |
| AGAAGAGTCATGTGGTGACT+TGG | + | Chr2:46529684-46529703 | None:intergenic | 45.0% | |
| AGCAAGTAAAGGCAGAGTTC+AGG | + | Chr2:46530460-46530479 | None:intergenic | 45.0% | |
| CAAAATGGACATGTCCACGA+CGG | + | Chr2:46530027-46530046 | None:intergenic | 45.0% | |
| GAACCTATTTCAATGGGTGC+TGG | - | Chr2:46530295-46530314 | MsG0280009156.01.T01:CDS | 45.0% | |
| GCATTGGAGTGTGAGAAGAA+AGG | - | Chr2:46530148-46530167 | MsG0280009156.01.T01:CDS | 45.0% | |
| GGCTCAACTTTGAGTCATCT+TGG | + | Chr2:46530054-46530073 | None:intergenic | 45.0% | |
| TAGGCATGAATGTGGATCAG+AGG | - | Chr2:46530249-46530268 | MsG0280009156.01.T01:CDS | 45.0% | |
| TGGAGTGTGAGAAGAAAGGA+GGG | - | Chr2:46530152-46530171 | MsG0280009156.01.T01:CDS | 45.0% | |
| TGTTGCCAATGCCAAGTAGT+GGG | - | Chr2:46530320-46530339 | MsG0280009156.01.T01:CDS | 45.0% | |
| TTGGAGTGTGAGAAGAAAGG+AGG | - | Chr2:46530151-46530170 | MsG0280009156.01.T01:CDS | 45.0% | |
| TTGGTTAGGGAAATGGCTTC+TGG | - | Chr2:46530112-46530131 | MsG0280009156.01.T01:CDS | 45.0% | |
| ! | ATGATGAACCCTGTTGGTAG+TGG | - | Chr2:46530430-46530449 | MsG0280009156.01.T01:CDS | 45.0% |
| ! | CGTTCACTTCACAGTTCTAG+TGG | - | Chr2:46529971-46529990 | MsG0280009156.01.T01:CDS | 45.0% |
| !! | GGCTTTGGATGAAGATGATG+AGG | - | Chr2:46529742-46529761 | MsG0280009156.01.T01:CDS | 45.0% |
| !! | TGTTGGTGGTGAGAAAGAAG+AGG | - | Chr2:46529823-46529842 | MsG0280009156.01.T01:CDS | 45.0% |
| CCATTCCCACTACTTGGCAT+TGG | + | Chr2:46530328-46530347 | None:intergenic | 50.0% | |
| GGGAATGGAGGTGAGTTTGA+AGG | - | Chr2:46530340-46530359 | MsG0280009156.01.T01:CDS | 50.0% | |
| GTGTTGCCAATGCCAAGTAG+TGG | - | Chr2:46530319-46530338 | MsG0280009156.01.T01:CDS | 50.0% | |
| TCACCTCCATTCCCACTACT+TGG | + | Chr2:46530334-46530353 | None:intergenic | 50.0% | |
| TCCACGACGGTATCCGAAAA+GGG | + | Chr2:46530014-46530033 | None:intergenic | 50.0% | |
| TCTAGTGGGACACGTATGGT+GGG | - | Chr2:46529986-46530005 | MsG0280009156.01.T01:CDS | 50.0% | |
| TGGAGTGGTGAGGATTGCAT+TGG | - | Chr2:46530132-46530151 | MsG0280009156.01.T01:CDS | 50.0% | |
| TTCTAGTGGGACACGTATGG+TGG | - | Chr2:46529985-46530004 | MsG0280009156.01.T01:CDS | 50.0% | |
| ! | ATGCCAAGTAGTGGGAATGG+AGG | - | Chr2:46530328-46530347 | MsG0280009156.01.T01:CDS | 50.0% |
| ! | CAGTTCTAGTGGGACACGTA+TGG | - | Chr2:46529982-46530001 | MsG0280009156.01.T01:CDS | 50.0% |
| ! | CCAATGCCAAGTAGTGGGAA+TGG | - | Chr2:46530325-46530344 | MsG0280009156.01.T01:CDS | 50.0% |
| ! | TAGGGAAATGGCTTCTGGAG+TGG | - | Chr2:46530117-46530136 | MsG0280009156.01.T01:CDS | 50.0% |
| !! | AAATGGCTTCTGGAGTGGTG+AGG | - | Chr2:46530122-46530141 | MsG0280009156.01.T01:CDS | 50.0% |
| !! | ATGAACCCTGTTGGTAGTGG+TGG | - | Chr2:46530433-46530452 | MsG0280009156.01.T01:CDS | 50.0% |
| CAGGACCACCACTACCAACA+GGG | + | Chr2:46530441-46530460 | None:intergenic | 55.0% | |
| GTCCACGACGGTATCCGAAA+AGG | + | Chr2:46530015-46530034 | None:intergenic | 55.0% | |
| TCAGGACCACCACTACCAAC+AGG | + | Chr2:46530442-46530461 | None:intergenic | 55.0% | |
| ! | ACCCTTTTCGGATACCGTCG+TGG | - | Chr2:46530010-46530029 | MsG0280009156.01.T01:CDS | 55.0% |
| !!! | CGTATGGTGGGCACCCTTTT+CGG | - | Chr2:46529998-46530017 | MsG0280009156.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 46529674 | 46530489 | 46529674 | ID=MsG0280009156.01;Name=MsG0280009156.01 |
| Chr2 | mRNA | 46529674 | 46530489 | 46529674 | ID=MsG0280009156.01.T01;Parent=MsG0280009156.01;Name=MsG0280009156.01.T01;_AED=0.47;_eAED=0.47;_QI=0|-1|0|1|-1|1|1|0|271 |
| Chr2 | exon | 46529674 | 46530489 | 46529674 | ID=MsG0280009156.01.T01:exon:15827;Parent=MsG0280009156.01.T01 |
| Chr2 | CDS | 46529674 | 46530489 | 46529674 | ID=MsG0280009156.01.T01:cds;Parent=MsG0280009156.01.T01 |
| Gene Sequence |
| Protein sequence |
