AlfalfaGEDB | MsG0580026186.01

M. sativa cultivar ZhongmuNo.1 / MsG0580026186.01

KEGG: -
GO: GO:0016614 GO:0050660 GO:0055114
PFAM: PF00732 PF05199

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580026186.01.T01	XP_003613819.1	96.863	542	17	0	1	542	1	542	0	1085

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580026186.01.T01	Q9S746	43.486	545	223	14	53	531	62	587	2.08E-131	398

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580026186.01.T01	G7KGL1	96.863	542	17	0	1	542	1	542	0.0	1085

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048311.01	MsG0580026186.01	0.802331	5.901099e-49	2.882940e-46
MsG0080048701.01	MsG0580026186.01	0.830181	3.393984e-55	3.549478e-52
MsG0080048996.01	MsG0580026186.01	0.802351	5.847187e-49	2.857986e-46
MsG0080049140.01	MsG0580026186.01	0.813171	2.928893e-51	1.898740e-48
MsG0180000111.01	MsG0580026186.01	0.814161	1.774220e-51	1.181534e-48
MsG0180000360.01	MsG0580026186.01	0.835050	2.102052e-56	2.540679e-53
MsG0180000373.01	MsG0580026186.01	0.837700	4.453280e-57	5.832249e-54
MsG0180000983.01	MsG0580026186.01	0.808863	2.512484e-50	1.452656e-47
MsG0180001565.01	MsG0580026186.01	0.802130	6.493270e-49	3.155822e-46
MsG0180002421.01	MsG0580026186.01	0.859128	5.124071e-63	1.338705e-59

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580026186.01.T01	MTR_5g041340	96.863	542	17	0	1	542	1	542	0.0	1085
MsG0580026186.01.T01	MTR_5g011010	42.341	581	255	11	22	538	16	580	1.00e-144	429
MsG0580026186.01.T01	MTR_5g011020	44.059	547	226	13	54	536	13	543	4.44e-140	416
MsG0580026186.01.T01	MTR_8g016320	40.136	588	262	13	16	531	10	579	4.64e-130	392
MsG0580026186.01.T01	MTR_2g100070	42.144	541	234	13	54	531	63	587	2.65e-128	387
MsG0580026186.01.T01	MTR_1g101770	40.110	546	247	9	53	534	45	574	2.89e-127	384
MsG0580026186.01.T01	MTR_4g005860	42.780	554	248	14	31	532	24	560	1.87e-124	377
MsG0580026186.01.T01	MTR_1g101760	41.837	294	113	6	53	346	45	280	5.48e-61	208
MsG0580026186.01.T01	MTR_5g041300	78.378	37	8	0	458	494	138	174	7.57e-14	70.5
MsG0580026186.01.T01	MTR_5g024110	43.750	64	35	1	188	250	17	80	1.52e-13	68.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580026186.01.T01	AT1G14190	58.846	520	200	5	17	536	4	509	0.0	631
MsG0580026186.01.T01	AT1G14190	60.685	496	185	4	41	536	3	488	0.0	627
MsG0580026186.01.T01	AT1G14185	59.690	516	191	5	16	531	5	503	0.0	626
MsG0580026186.01.T01	AT1G72970	43.486	545	223	14	53	531	62	587	2.12e-132	398
MsG0580026186.01.T01	AT5G51950	42.779	547	228	11	54	532	13	542	1.28e-131	394
MsG0580026186.01.T01	AT3G56060	40.278	576	273	13	14	531	5	567	6.11e-131	394
MsG0580026186.01.T01	AT5G51950	42.779	547	228	11	54	532	46	575	6.49e-131	394
MsG0580026186.01.T01	AT5G51950	42.805	549	227	12	54	532	46	577	9.95e-131	394
MsG0580026186.01.T01	AT1G73050	44.510	510	238	12	54	531	54	550	2.15e-130	391
MsG0580026186.01.T01	AT1G12570	41.805	543	237	12	54	534	46	571	4.85e-130	391

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Find 116 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACACTCCCAGAAATCT+TGG	0.435114	5:+31959812	None:intergenic
AAAGATGATGCTCTTCACTG+TGG	0.719776	5:+31959710	None:intergenic
AACATAAATACAACAATGAG+AGG	0.588551	5:+31960792	None:intergenic
AACCAAACCATTCAACTTCA+AGG	0.464351	5:-31958899	MsG0580026186.01.T01:CDS
AACTGAGCAACAATGATCCA+AGG	0.586972	5:-31958548	MsG0580026186.01.T01:CDS
AAGAATGAAACAAGGGCTAA+GGG	0.566252	5:-31958981	MsG0580026186.01.T01:CDS
AAGGGTTTAAAGGTATTGGA+TGG	0.572626	5:-31958264	MsG0580026186.01.T01:CDS
AATGTGAGAGGAAGAGTTCT+TGG	0.424602	5:-31960062	MsG0580026186.01.T01:CDS
AATTACTCAATAAAATTGCA+AGG	0.586084	5:-31958455	MsG0580026186.01.T01:CDS
AATTCAGCAACAGATTGCCA+TGG	0.672603	5:+31959897	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTAAGCATCAATGAATCAA+GGG	-	Chr5:31959865-31959884	MsG0580026186.01.T01:CDS	30.0%
ACTAGTTCATGAAATGAAAC+AGG	-	Chr5:31959706-31959725	MsG0580026186.01.T01:CDS	30.0%
AGAACTATCTATCACTATCA+TGG	-	Chr5:31960145-31960164	MsG0580026186.01.T01:CDS	30.0%
AGCATCATCTTTCATTACAA+TGG	-	Chr5:31958785-31958804	MsG0580026186.01.T01:CDS	30.0%
AGTCATGATATCTCATAATG+TGG	+	Chr5:31959385-31959404	None:intergenic	30.0%
ATTACTAAGGGATTTCCATA+TGG	+	Chr5:31958311-31958330	None:intergenic	30.0%
CCGAAAATGTCCTATATTAT+AGG	-	Chr5:31960850-31960869	MsG0580026186.01.T01:five_prime_UTR	30.0%
CCGAAATTTCCTCAAATTAT+AGG	+	Chr5:31960656-31960675	None:intergenic	30.0%
CGAAAATGACCTATATTACA+CGG	+	Chr5:31960544-31960563	None:intergenic	30.0%
CTACAAAGTTCATGGTATAA+AGG	-	Chr5:31960201-31960220	MsG0580026186.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	31957591	31960915	31957591	ID=MsG0580026186.01;Name=MsG0580026186.01
Chr5	mRNA	31957591	31960915	31957591	ID=MsG0580026186.01.T01;Parent=MsG0580026186.01;Name=MsG0580026186.01.T01;_AED=0.43;_eAED=0.43;_QI=68\|1\|1\|1\|0.33\|0\|4\|164\|543
Chr5	exon	31957591	31957615	31957591	ID=MsG0580026186.01.T01:exon:13247;Parent=MsG0580026186.01.T01
Chr5	exon	31957995	31959008	31957995	ID=MsG0580026186.01.T01:exon:13246;Parent=MsG0580026186.01.T01
Chr5	exon	31959700	31960350	31959700	ID=MsG0580026186.01.T01:exon:13245;Parent=MsG0580026186.01.T01
Chr5	exon	31960742	31960915	31960742	ID=MsG0580026186.01.T01:exon:13244;Parent=MsG0580026186.01.T01
Chr5	five_prime_UTR	31960848	31960915	31960848	ID=MsG0580026186.01.T01:five_prime_utr;Parent=MsG0580026186.01.T01
Chr5	CDS	31960742	31960847	31960742	ID=MsG0580026186.01.T01:cds;Parent=MsG0580026186.01.T01
Chr5	CDS	31959700	31960350	31959700	ID=MsG0580026186.01.T01:cds;Parent=MsG0580026186.01.T01
Chr5	CDS	31958134	31959008	31958134	ID=MsG0580026186.01.T01:cds;Parent=MsG0580026186.01.T01
Chr5	three_prime_UTR	31957995	31958133	31957995	ID=MsG0580026186.01.T01:three_prime_utr;Parent=MsG0580026186.01.T01
Chr5	three_prime_UTR	31957591	31957615	31957591	ID=MsG0580026186.01.T01:three_prime_utr;Parent=MsG0580026186.01.T01

Gene Sequence

>MsG0580026186.01.T01

ATGGAACTTCCACAAATCAAACATGTTCATAAGCCTCTCATTGTTGTATTTATGTTGTTCATAGTACTTGCAAATTGTGGTTTCTGTTTCCCTTCAGAACCTCAAGGTAAGAGACAATGGCACATGACTTCCGATGTTAAGGAAGTAGCAAGGAAATCATATGACTACATTATAGTTGGAGGAGGTACATGTGGTTGTCCTTTAGCAGCTACTCTATCAGAGAAATTTTCTGTGTTACTAATAGAAAGAGGTGGTTCACCATATGGAAATCCCTTAGTAATTGATAGAAGATACTATGGTTTTCCACTGATTCAAAAAGACAACAATCATATGTCAGTAGCACAAAGATTCACTTCAGAAGATGGTGTTAGCAATGTGAGAGGAAGAGTTCTTGGTGGATCATCAGCTATAAATGGTGGATTTTATAGTAGAGCAAGTGATGAATTTGTTGATAAAGTTGGTTGGGATAAGAAACTTGTTAAAGAAGCTTATGAATGGGTGGAATCAAAAGTTGTTTTTCCTCCCTTTTTTCTCACACCATGGCAATCTGTTGCTGAATTTAGTCTTCTCGAAACGGGGATTTTGCCCTATAATGGTTATAGTTTGGAACATATCAGGGGAACCAAGATTTCTGGGAGTGTGTTTGATGGATTTGGAAAGAGACATACCTCAGCTGATCTACTTGGGGCTGGAAATCCAAAGAACCTAACAGTTCTTCTGAATGCCACAGTGAAGAGCATCATCTTTCATTACAATGGTGACAAGAATGAAACAAGGGCTAAGGGTATCAAGTTCATCAAGAGCAATGGAAGTTTAGATGAAACATATGAAGCCTACATCAAGAAACCAAACCATTCAACTTCAAGGGGTGATGTCATATTATCAGCAGGTGCATTAGGTAGCCCTCAACTTTTGCTTCTAAGTGGCATTGGACCAAAAGAACAATTGAAAAAATTCAACATTTCACTAGTTCATGAAATGAAACAGGTTGGTCAAGGAATGCAAGACAACCCTTGCATAGCAATCTTAGTTGATTCTAAGCCAGAAAATAGACTTCCTGATCCACCACAAATTGCAGGCATAACAGAAGACTTGAAAATCATAGTTGAAGCATCAATATTTCCACTAAGCATCAATGAATCAAGGGTTAACATTGCTGCAAAGATAGCTATGCCTCTTTCAAAAGGGTACCTTGAACTGAGCAACAATGATCCAAGGCTTAACCCTGCTGTGAAATTCAACTATCTAGAGAATGAAAATGACATGGAAGAATGTATTAAGATGACGAAATTACTCAATAAAATTGCAAGGTCTAAGTCTATTGCATTTTTCCTTGGTGAGTCACAGCAAAGCAAATTGGTATCTACTGAGTTTGACCTTAGAAAGTTTTGCAAGAAAAATGTAAGAACTATCTATCACTATCATGGTGGTTGCAATGTTGGAACAGTGGTTGATAAAGACTACAAAGTTCATGGTATAAAGGGTTTAAAGGTATTGGATGGCTCAACTTTTTCTGAGTCACCAGGTACTAATCCAATGGCTACACTTTTGATGCTAGGAAGGTATCAAGGTATCAAGATTCTCCAACAAAGGGAAACAGAATCTGAATTGAATATCAAAGAAAACTCATAA

Protein sequence

>MsG0580026186.01.T01

MELPQIKHVHKPLIVVFMLFIVLANCGFCFPSEPQGKRQWHMTSDVKEVARKSYDYIIVGGGTCGCPLAATLSEKFSVLLIERGGSPYGNPLVIDRRYYGFPLIQKDNNHMSVAQRFTSEDGVSNVRGRVLGGSSAINGGFYSRASDEFVDKVGWDKKLVKEAYEWVESKVVFPPFFLTPWQSVAEFSLLETGILPYNGYSLEHIRGTKISGSVFDGFGKRHTSADLLGAGNPKNLTVLLNATVKSIIFHYNGDKNETRAKGIKFIKSNGSLDETYEAYIKKPNHSTSRGDVILSAGALGSPQLLLLSGIGPKEQLKKFNISLVHEMKQVGQGMQDNPCIAILVDSKPENRLPDPPQIAGITEDLKIIVEASIFPLSINESRVNIAAKIAMPLSKGYLELSNNDPRLNPAVKFNYLENENDMEECIKMTKLLNKIARSKSIAFFLGESQQSKLVSTEFDLRKFCKKNVRTIYHYHGGCNVGTVVDKDYKVHGIKGLKVLDGSTFSESPGTNPMATLLMLGRYQGIKILQQRETESELNIKENS*