Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009118.01.T01 | XP_013463905.2 | 97.059 | 272 | 5 | 2 | 1 | 271 | 5 | 274 | 0 | 532 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009118.01.T01 | O22227 | 52.542 | 177 | 73 | 4 | 104 | 271 | 123 | 297 | 1.13E-58 | 191 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009118.01.T01 | A0A396JCM5 | 97.059 | 272 | 5 | 2 | 1 | 271 | 5 | 274 | 0.0 | 532 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080049140.01 | MsG0280009118.01 | 0.811174 | 7.988893e-51 | 4.910786e-48 |
| MsG0180001531.01 | MsG0280009118.01 | 0.809863 | 1.533053e-50 | 9.102914e-48 |
| MsG0180001565.01 | MsG0280009118.01 | 0.800132 | 1.663763e-48 | 7.686934e-46 |
| MsG0180002421.01 | MsG0280009118.01 | 0.814055 | 1.871697e-51 | 1.242909e-48 |
| MsG0180004099.01 | MsG0280009118.01 | 0.802157 | 6.410164e-49 | 3.117626e-46 |
| MsG0180004754.01 | MsG0280009118.01 | 0.804412 | 2.187555e-49 | 1.127115e-46 |
| MsG0180005188.01 | MsG0280009118.01 | 0.800937 | 1.140247e-48 | 5.377108e-46 |
| MsG0180006000.01 | MsG0280009118.01 | 0.817521 | 3.158317e-52 | 2.305325e-49 |
| MsG0280008280.01 | MsG0280009118.01 | 0.810046 | 1.400081e-50 | 8.353629e-48 |
| MsG0280009118.01 | MsG0280009156.01 | 0.897797 | 9.923237e-77 | 1.139388e-72 |
| MsG0280009118.01 | MsG0280009514.01 | 0.850690 | 1.442356e-60 | 2.848582e-57 |
| MsG0280009118.01 | MsG0280010779.01 | 0.863535 | 2.322633e-64 | 7.064610e-61 |
| MsG0280009118.01 | MsG0280011282.01 | 0.851003 | 1.177747e-60 | 2.350314e-57 |
| MsG0280009118.01 | MsG0280011399.01 | 0.829127 | 6.125585e-55 | 6.212375e-52 |
| MsG0280009118.01 | MsG0380012522.01 | 0.804914 | 1.718080e-49 | 8.968900e-47 |
| MsG0280009118.01 | MsG0380014132.01 | 0.828746 | 7.576080e-55 | 7.597274e-52 |
| MsG0280009118.01 | MsG0380015548.01 | 0.861211 | 1.203219e-63 | 3.378133e-60 |
| MsG0280009118.01 | MsG0380016703.01 | 0.837325 | 5.554676e-57 | 7.190187e-54 |
| MsG0280009118.01 | MsG0380016994.01 | 0.811895 | 5.568493e-51 | 3.488776e-48 |
| MsG0280009118.01 | MsG0480018397.01 | 0.801325 | 9.497749e-49 | 4.522826e-46 |
| MsG0280009118.01 | MsG0480018919.01 | 0.840165 | 1.024849e-57 | 1.447659e-54 |
| MsG0280009118.01 | MsG0480019635.01 | 0.819716 | 1.003696e-52 | 7.784026e-50 |
| MsG0280009118.01 | MsG0480021013.01 | 0.805202 | 1.496086e-49 | 7.867249e-47 |
| MsG0280009118.01 | MsG0480021705.01 | 0.811943 | 5.435569e-51 | 3.410018e-48 |
| MsG0280009118.01 | MsG0480022331.01 | 0.853845 | 1.824986e-61 | 3.997267e-58 |
| MsG0280009118.01 | MsG0480022738.01 | 0.833302 | 5.764842e-56 | 6.612291e-53 |
| MsG0280009118.01 | MsG0480023196.01 | 0.808167 | 3.537694e-50 | 2.008479e-47 |
| MsG0280009118.01 | MsG0480023421.01 | 0.821213 | 4.549056e-53 | 3.678093e-50 |
| MsG0280009118.01 | MsG0480023541.01 | 0.807186 | 5.714985e-50 | 3.162408e-47 |
| MsG0280009118.01 | MsG0480023620.01 | 0.805319 | 1.414018e-49 | 7.457993e-47 |
| MsG0280009118.01 | MsG0580024035.01 | 0.813405 | 2.602627e-51 | 1.698158e-48 |
| MsG0280009118.01 | MsG0580024489.01 | 0.825236 | 5.232731e-54 | 4.742241e-51 |
| MsG0280009118.01 | MsG0580026186.01 | 0.820185 | 7.838372e-53 | 6.159056e-50 |
| MsG0280009118.01 | MsG0580027954.01 | 0.804333 | 2.271354e-49 | 1.167965e-46 |
| MsG0280009118.01 | MsG0580028060.01 | 0.800396 | 1.470215e-48 | 6.838368e-46 |
| MsG0280009118.01 | MsG0580029298.01 | 0.831584 | 1.536675e-55 | 1.674941e-52 |
| MsG0280009118.01 | MsG0580029640.01 | 0.828693 | 7.800250e-55 | 7.810780e-52 |
| MsG0280009118.01 | MsG0680030763.01 | 0.841122 | 5.752788e-58 | 8.369490e-55 |
| MsG0280009118.01 | MsG0680031384.01 | 0.843534 | 1.321169e-58 | 2.073282e-55 |
| MsG0280009118.01 | MsG0680031386.01 | 0.845496 | 3.918041e-59 | 6.541302e-56 |
| MsG0280009118.01 | MsG0780036752.01 | 0.801738 | 7.815010e-49 | 3.760403e-46 |
| MsG0280009118.01 | MsG0780038386.01 | 0.800078 | 1.705796e-48 | 7.870486e-46 |
| MsG0280009118.01 | MsG0780039430.01 | 0.804909 | 1.722728e-49 | 8.991889e-47 |
| MsG0280009118.01 | MsG0780039712.01 | 0.816557 | 5.201253e-52 | 3.697436e-49 |
| MsG0280009118.01 | MsG0780040896.01 | 0.816325 | 5.862430e-52 | 4.141398e-49 |
| MsG0280009118.01 | MsG0780041063.01 | 0.812872 | 3.407584e-51 | 2.191353e-48 |
| MsG0280009118.01 | MsG0880042583.01 | 0.801673 | 8.057316e-49 | 3.870718e-46 |
| MsG0280009118.01 | MsG0880042845.01 | 0.807967 | 3.901441e-50 | 2.203224e-47 |
| MsG0280009118.01 | MsG0880043516.01 | 0.801056 | 1.078138e-48 | 5.099712e-46 |
| MsG0280009118.01 | MsG0880046762.01 | 0.805453 | 1.325152e-49 | 7.013598e-47 |
| MsG0280009118.01 | MsG0880047226.01 | 0.805005 | 1.644556e-49 | 8.604335e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009118.01.T01 | MTR_2g054380 | 97.059 | 272 | 5 | 2 | 1 | 271 | 1 | 270 | 0.0 | 531 |
| MsG0280009118.01.T01 | MTR_2g055990 | 55.263 | 266 | 106 | 4 | 9 | 271 | 4 | 259 | 5.83e-91 | 270 |
| MsG0280009118.01.T01 | MTR_4g112370 | 52.015 | 273 | 101 | 7 | 5 | 271 | 12 | 260 | 2.11e-89 | 266 |
| MsG0280009118.01.T01 | MTR_1g053130 | 55.556 | 180 | 69 | 3 | 101 | 271 | 107 | 284 | 1.09e-56 | 183 |
| MsG0280009118.01.T01 | MTR_3g094830 | 44.186 | 172 | 93 | 2 | 101 | 271 | 90 | 259 | 2.52e-52 | 171 |
| MsG0280009118.01.T01 | MTR_8g040690 | 48.795 | 166 | 81 | 2 | 107 | 271 | 85 | 247 | 2.41e-51 | 168 |
| MsG0280009118.01.T01 | MTR_8g040680 | 39.912 | 228 | 104 | 4 | 70 | 271 | 37 | 257 | 1.90e-49 | 164 |
| MsG0280009118.01.T01 | MTR_3g101300 | 50.000 | 166 | 75 | 3 | 111 | 270 | 72 | 235 | 2.33e-49 | 163 |
| MsG0280009118.01.T01 | MTR_7g064810 | 45.062 | 162 | 84 | 3 | 110 | 270 | 65 | 222 | 2.01e-40 | 140 |
| MsG0280009118.01.T01 | MTR_3g086740 | 34.667 | 225 | 132 | 6 | 55 | 270 | 24 | 242 | 2.56e-35 | 127 |
| MsG0280009118.01.T01 | MTR_8g089865 | 37.423 | 163 | 97 | 4 | 112 | 270 | 59 | 220 | 4.91e-33 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009118.01.T01 | AT3G25640 | 48.805 | 293 | 99 | 6 | 1 | 271 | 30 | 293 | 9.35e-81 | 245 |
| MsG0280009118.01.T01 | AT3G25640 | 48.805 | 293 | 99 | 6 | 1 | 271 | 4 | 267 | 1.19e-80 | 244 |
| MsG0280009118.01.T01 | AT5G23100 | 48.047 | 256 | 103 | 5 | 46 | 271 | 22 | 277 | 3.84e-70 | 218 |
| MsG0280009118.01.T01 | AT2G41660 | 52.542 | 177 | 73 | 4 | 104 | 271 | 123 | 297 | 1.16e-59 | 191 |
| MsG0280009118.01.T01 | AT2G21990 | 48.235 | 170 | 80 | 3 | 105 | 271 | 88 | 252 | 1.64e-54 | 177 |
| MsG0280009118.01.T01 | AT5G06990 | 48.588 | 177 | 82 | 2 | 103 | 271 | 86 | 261 | 1.08e-51 | 170 |
| MsG0280009118.01.T01 | AT4G39610 | 46.512 | 172 | 82 | 2 | 108 | 271 | 95 | 264 | 6.36e-51 | 168 |
| MsG0280009118.01.T01 | AT5G42680 | 54.938 | 162 | 68 | 4 | 111 | 270 | 78 | 236 | 3.19e-49 | 163 |
| MsG0280009118.01.T01 | AT5G42680 | 54.938 | 162 | 68 | 4 | 111 | 270 | 78 | 236 | 3.19e-49 | 163 |
| MsG0280009118.01.T01 | AT2G37880 | 47.929 | 169 | 83 | 3 | 106 | 270 | 77 | 244 | 3.54e-46 | 155 |
| MsG0280009118.01.T01 | AT1G21050 | 45.399 | 163 | 78 | 4 | 112 | 270 | 89 | 244 | 1.16e-40 | 141 |
| MsG0280009118.01.T01 | AT1G21050 | 45.399 | 163 | 78 | 4 | 112 | 270 | 125 | 280 | 1.20e-40 | 142 |
| MsG0280009118.01.T01 | AT5G65340 | 42.775 | 173 | 81 | 5 | 110 | 270 | 83 | 249 | 9.57e-38 | 134 |
| MsG0280009118.01.T01 | AT1G76610 | 43.713 | 167 | 79 | 4 | 106 | 270 | 72 | 225 | 3.07e-37 | 131 |
| MsG0280009118.01.T01 | AT2G22460 | 36.646 | 161 | 97 | 3 | 110 | 269 | 85 | 241 | 2.71e-31 | 116 |
Find 62 sgRNAs with CRISPR-Local
Find 73 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAAGTATGAGAGGGTTAT+TGG | 0.220635 | 2:+45677026 | MsG0280009118.01.T01:CDS |
| TTGGTTAGGGAAATGGCTTC+TGG | 0.285014 | 2:+45676756 | MsG0280009118.01.T01:CDS |
| AGTTGCTTGAAGAACCAATT+TGG | 0.286219 | 2:+45676832 | MsG0280009118.01.T01:CDS |
| AGTCATCTTGGAAAGCAAAA+TGG | 0.301808 | 2:-45676683 | None:intergenic |
| CAGCAATTTCTAATGGCATT+TGG | 0.314688 | 2:-45676527 | None:intergenic |
| TTACAATAAGACCTCCAAAT+TGG | 0.326088 | 2:-45676846 | None:intergenic |
| CTTCTTTCTCCTTCTCTAGA+AGG | 0.332135 | 2:+45676343 | MsG0280009118.01.T01:CDS |
| ACACCAGCACCCATTGAAAT+AGG | 0.337206 | 2:-45676942 | None:intergenic |
| TCCCTAACCAAAACACTTGT+TGG | 0.338137 | 2:-45676744 | None:intergenic |
| AGCAACACCAACAAGTGTTT+TGG | 0.352527 | 2:+45676737 | MsG0280009118.01.T01:CDS |
| TCAAGAGCAGCAATTTCTAA+TGG | 0.388276 | 2:-45676534 | None:intergenic |
| CTAAGTATGAGAGGGTTATT+GGG | 0.402385 | 2:+45677027 | MsG0280009118.01.T01:CDS |
| GGCTCAACTTTGAGTCATCT+TGG | 0.402943 | 2:-45676695 | None:intergenic |
| GAAAATGTGGTTATGCATAT+AGG | 0.413946 | 2:+45676874 | MsG0280009118.01.T01:CDS |
| AGCAAGTAAAGGCAGAGTTC+AGG | 0.432013 | 2:-45677101 | None:intergenic |
| GTCCACGACGGTATCCGAAA+AGG | 0.435618 | 2:-45676656 | None:intergenic |
| GCTAGCTCAATTAAGAATGT+AGG | 0.445992 | 2:-45676717 | None:intergenic |
| TCTCTAGAAGGTATTTCCAT+TGG | 0.449753 | 2:+45676355 | MsG0280009118.01.T01:CDS |
| TCAGGACCACCACTACCAAC+AGG | 0.456710 | 2:-45677083 | None:intergenic |
| ATTTGGAGGTCTTATTGTAA+TGG | 0.458861 | 2:+45676849 | MsG0280009118.01.T01:CDS |
| TGGAGTGTGAGAAGAAAGGA+GGG | 0.460730 | 2:+45676796 | MsG0280009118.01.T01:CDS |
| TCACCTCCATTCCCACTACT+TGG | 0.485738 | 2:-45676975 | None:intergenic |
| TTGGAGTGTGAGAAGAAAGG+AGG | 0.490295 | 2:+45676795 | MsG0280009118.01.T01:CDS |
| TTTCAATATCTTCCATTCCT+CGG | 0.491311 | 2:-45676910 | None:intergenic |
| GGCTTTGGATGAAGATGATG+AGG | 0.491809 | 2:+45676386 | MsG0280009118.01.T01:CDS |
| TATTGTAATGGAAGAAAATG+TGG | 0.509766 | 2:+45676861 | MsG0280009118.01.T01:CDS |
| CTAGCTCAATTAAGAATGTA+GGG | 0.510058 | 2:-45676716 | None:intergenic |
| TGCTTGAAGAACCAATTTGG+AGG | 0.514952 | 2:+45676835 | MsG0280009118.01.T01:CDS |
| GTTAAACTCTAAGCAAGTAA+AGG | 0.515924 | 2:-45677112 | None:intergenic |
| TTCTAGTGGCACACGTATGG+TGG | 0.520065 | 2:+45676629 | MsG0280009118.01.T01:CDS |
| AGCTGTGGAACCTATTTCAA+TGG | 0.524917 | 2:+45676932 | MsG0280009118.01.T01:CDS |
| TCCACGACGGTATCCGAAAA+GGG | 0.528553 | 2:-45676655 | None:intergenic |
| CCATTCCCACTACTTGGCAT+TGG | 0.536474 | 2:-45676969 | None:intergenic |
| GAACCTATTTCAATGGGTGC+TGG | 0.538761 | 2:+45676939 | MsG0280009118.01.T01:CDS |
| GCTGTGGAACCTATTTCAAT+GGG | 0.541783 | 2:+45676933 | MsG0280009118.01.T01:CDS |
| TGGAGTGGTGAGGATTGCAT+TGG | 0.543210 | 2:+45676776 | MsG0280009118.01.T01:CDS |
| CAGTTCTAGTGGCACACGTA+TGG | 0.547741 | 2:+45676626 | MsG0280009118.01.T01:CDS |
| GGGAATGGAGGTGAGTTTGA+AGG | 0.549280 | 2:+45676984 | MsG0280009118.01.T01:CDS |
| GCATTGGAGTGTGAGAAGAA+AGG | 0.552731 | 2:+45676792 | MsG0280009118.01.T01:CDS |
| CCAATGCCAAGTAGTGGGAA+TGG | 0.559271 | 2:+45676969 | MsG0280009118.01.T01:CDS |
| ATGAACCCTGTTGGTAGTGG+TGG | 0.559559 | 2:+45677077 | MsG0280009118.01.T01:CDS |
| AGAAGAGTCATGTGGTGACT+TGG | 0.563167 | 2:-45676325 | None:intergenic |
| TATGAGAGCTAAGTATGAGA+GGG | 0.565675 | 2:+45677019 | MsG0280009118.01.T01:CDS |
| CGTTCACTTCACAGTTCTAG+TGG | 0.569271 | 2:+45676615 | MsG0280009118.01.T01:CDS |
| ATGGAAATACCTTCTAGAGA+AGG | 0.577098 | 2:-45676352 | None:intergenic |
| ATATGAGAGCTAAGTATGAG+AGG | 0.585257 | 2:+45677018 | MsG0280009118.01.T01:CDS |
| ATGATGAACCCTGTTGGTAG+TGG | 0.586626 | 2:+45677074 | MsG0280009118.01.T01:CDS |
| TTCTACATGATGAACCCTGT+TGG | 0.588457 | 2:+45677068 | MsG0280009118.01.T01:CDS |
| ATGGAAGATATTGAAAGCTG+TGG | 0.589180 | 2:+45676917 | MsG0280009118.01.T01:CDS |
| ATGAATGTGGATCCGAGGAA+TGG | 0.598910 | 2:+45676898 | MsG0280009118.01.T01:CDS |
| TAGGGAAATGGCTTCTGGAG+TGG | 0.612183 | 2:+45676761 | MsG0280009118.01.T01:CDS |
| TCTAGTGGCACACGTATGGT+GGG | 0.631207 | 2:+45676630 | MsG0280009118.01.T01:CDS |
| AAGGAGAAAGAAGAGTCATG+TGG | 0.646233 | 2:-45676333 | None:intergenic |
| TAGGCATGAATGTGGATCCG+AGG | 0.652974 | 2:+45676893 | MsG0280009118.01.T01:CDS |
| ATGCCAAGTAGTGGGAATGG+AGG | 0.656575 | 2:+45676972 | MsG0280009118.01.T01:CDS |
| TGTTGCCAATGCCAAGTAGT+GGG | 0.657243 | 2:+45676964 | MsG0280009118.01.T01:CDS |
| CAGGACCACCACTACCAACA+GGG | 0.658555 | 2:-45677082 | None:intergenic |
| AAATGGCTTCTGGAGTGGTG+AGG | 0.662532 | 2:+45676766 | MsG0280009118.01.T01:CDS |
| GTGTTGCCAATGCCAAGTAG+TGG | 0.663696 | 2:+45676963 | MsG0280009118.01.T01:CDS |
| TATGCATATAGGCATGAATG+TGG | 0.680421 | 2:+45676885 | MsG0280009118.01.T01:CDS |
| TGTTGGTGGTGAGAAAGAAG+AGG | 0.693894 | 2:+45676467 | MsG0280009118.01.T01:CDS |
| CAAAATGGACATGTCCACGA+CGG | 0.712176 | 2:-45676668 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTGTAATGGAAGAAAATG+TGG | + | Chr2:45676861-45676880 | MsG0280009118.01.T01:CDS | 25.0% |
| CTAGCTCAATTAAGAATGTA+GGG | - | Chr2:45676719-45676738 | None:intergenic | 30.0% | |
| GAAAATGTGGTTATGCATAT+AGG | + | Chr2:45676874-45676893 | MsG0280009118.01.T01:CDS | 30.0% | |
| GTATTTCCATTGGAAAAAGA+AGG | + | Chr2:45676365-45676384 | MsG0280009118.01.T01:CDS | 30.0% | |
| TTACAATAAGACCTCCAAAT+TGG | - | Chr2:45676849-45676868 | None:intergenic | 30.0% | |
| TTTCAATATCTTCCATTCCT+CGG | - | Chr2:45676913-45676932 | None:intergenic | 30.0% | |
| !! | ATTTGGAGGTCTTATTGTAA+TGG | + | Chr2:45676849-45676868 | MsG0280009118.01.T01:CDS | 30.0% |
| AGTCATCTTGGAAAGCAAAA+TGG | - | Chr2:45676686-45676705 | None:intergenic | 35.0% | |
| AGTTGCTTGAAGAACCAATT+TGG | + | Chr2:45676832-45676851 | MsG0280009118.01.T01:CDS | 35.0% | |
| ATATGAGAGCTAAGTATGAG+AGG | + | Chr2:45677018-45677037 | MsG0280009118.01.T01:CDS | 35.0% | |
| ATGGAAGATATTGAAAGCTG+TGG | + | Chr2:45676917-45676936 | MsG0280009118.01.T01:CDS | 35.0% | |
| CAGCAATTTCTAATGGCATT+TGG | - | Chr2:45676530-45676549 | None:intergenic | 35.0% | |
| CTAAGTATGAGAGGGTTATT+GGG | + | Chr2:45677027-45677046 | MsG0280009118.01.T01:CDS | 35.0% | |
| GCTAGCTCAATTAAGAATGT+AGG | - | Chr2:45676720-45676739 | None:intergenic | 35.0% | |
| TATGAGAGCTAAGTATGAGA+GGG | + | Chr2:45677019-45677038 | MsG0280009118.01.T01:CDS | 35.0% | |
| TATGCATATAGGCATGAATG+TGG | + | Chr2:45676885-45676904 | MsG0280009118.01.T01:CDS | 35.0% | |
| TCAAGAGCAGCAATTTCTAA+TGG | - | Chr2:45676537-45676556 | None:intergenic | 35.0% | |
| ! | ATGGAAATACCTTCTAGAGA+AGG | - | Chr2:45676355-45676374 | None:intergenic | 35.0% |
| ! | GATGATGATGATGATGATGT+TGG | + | Chr2:45676450-45676469 | MsG0280009118.01.T01:CDS | 35.0% |
| ! | TTCATCATCACATTTTCCTG+AGG | + | Chr2:45676428-45676447 | MsG0280009118.01.T01:CDS | 35.0% |
| !! | TCTCTAGAAGGTATTTCCAT+TGG | + | Chr2:45676355-45676374 | MsG0280009118.01.T01:CDS | 35.0% |
| !!! | AAGTGTTTTGGTTAGGGAAA+TGG | + | Chr2:45676749-45676768 | MsG0280009118.01.T01:CDS | 35.0% |
| !!! | ACCAACAAGTGTTTTGGTTA+GGG | + | Chr2:45676743-45676762 | MsG0280009118.01.T01:CDS | 35.0% |
| AAGGAGAAAGAAGAGTCATG+TGG | - | Chr2:45676336-45676355 | None:intergenic | 40.0% | |
| AGCTGTGGAACCTATTTCAA+TGG | + | Chr2:45676932-45676951 | MsG0280009118.01.T01:CDS | 40.0% | |
| CCATTGGAAAAAGAAGGCTT+TGG | + | Chr2:45676371-45676390 | MsG0280009118.01.T01:CDS | 40.0% | |
| CTTCTTTCTCCTTCTCTAGA+AGG | + | Chr2:45676343-45676362 | MsG0280009118.01.T01:CDS | 40.0% | |
| GCTAAGTATGAGAGGGTTAT+TGG | + | Chr2:45677026-45677045 | MsG0280009118.01.T01:CDS | 40.0% | |
| GCTGTGGAACCTATTTCAAT+GGG | + | Chr2:45676933-45676952 | MsG0280009118.01.T01:CDS | 40.0% | |
| TCATCATCATCATCATCCTC+AGG | - | Chr2:45676447-45676466 | None:intergenic | 40.0% | |
| TCCCTAACCAAAACACTTGT+TGG | - | Chr2:45676747-45676766 | None:intergenic | 40.0% | |
| TGCTTGAAGAACCAATTTGG+AGG | + | Chr2:45676835-45676854 | MsG0280009118.01.T01:CDS | 40.0% | |
| TTCTACATGATGAACCCTGT+TGG | + | Chr2:45677068-45677087 | MsG0280009118.01.T01:CDS | 40.0% | |
| ! | AGCAACACCAACAAGTGTTT+TGG | + | Chr2:45676737-45676756 | MsG0280009118.01.T01:CDS | 40.0% |
| ! | CCAAAGCCTTCTTTTTCCAA+TGG | - | Chr2:45676374-45676393 | None:intergenic | 40.0% |
| ! | GATGATGATGATGATGTTGG+TGG | + | Chr2:45676453-45676472 | MsG0280009118.01.T01:CDS | 40.0% |
| !!! | CACCAACAAGTGTTTTGGTT+AGG | + | Chr2:45676742-45676761 | MsG0280009118.01.T01:CDS | 40.0% |
| ACACCAGCACCCATTGAAAT+AGG | - | Chr2:45676945-45676964 | None:intergenic | 45.0% | |
| AGAAGAGTCATGTGGTGACT+TGG | - | Chr2:45676328-45676347 | None:intergenic | 45.0% | |
| AGCAAGTAAAGGCAGAGTTC+AGG | - | Chr2:45677104-45677123 | None:intergenic | 45.0% | |
| ATGAATGTGGATCCGAGGAA+TGG | + | Chr2:45676898-45676917 | MsG0280009118.01.T01:CDS | 45.0% | |
| CAAAATGGACATGTCCACGA+CGG | - | Chr2:45676671-45676690 | None:intergenic | 45.0% | |
| GAACCTATTTCAATGGGTGC+TGG | + | Chr2:45676939-45676958 | MsG0280009118.01.T01:CDS | 45.0% | |
| GCATTGGAGTGTGAGAAGAA+AGG | + | Chr2:45676792-45676811 | MsG0280009118.01.T01:CDS | 45.0% | |
| GGCTCAACTTTGAGTCATCT+TGG | - | Chr2:45676698-45676717 | None:intergenic | 45.0% | |
| TGGAGTGTGAGAAGAAAGGA+GGG | + | Chr2:45676796-45676815 | MsG0280009118.01.T01:CDS | 45.0% | |
| TGTTGCCAATGCCAAGTAGT+GGG | + | Chr2:45676964-45676983 | MsG0280009118.01.T01:CDS | 45.0% | |
| TTGGAGTGTGAGAAGAAAGG+AGG | + | Chr2:45676795-45676814 | MsG0280009118.01.T01:CDS | 45.0% | |
| TTGGTTAGGGAAATGGCTTC+TGG | + | Chr2:45676756-45676775 | MsG0280009118.01.T01:CDS | 45.0% | |
| ! | ATGATGAACCCTGTTGGTAG+TGG | + | Chr2:45677074-45677093 | MsG0280009118.01.T01:CDS | 45.0% |
| ! | CGTTCACTTCACAGTTCTAG+TGG | + | Chr2:45676615-45676634 | MsG0280009118.01.T01:CDS | 45.0% |
| !! | GGCTTTGGATGAAGATGATG+AGG | + | Chr2:45676386-45676405 | MsG0280009118.01.T01:CDS | 45.0% |
| !! | TGTTGGTGGTGAGAAAGAAG+AGG | + | Chr2:45676467-45676486 | MsG0280009118.01.T01:CDS | 45.0% |
| CCATTCCCACTACTTGGCAT+TGG | - | Chr2:45676972-45676991 | None:intergenic | 50.0% | |
| GGGAATGGAGGTGAGTTTGA+AGG | + | Chr2:45676984-45677003 | MsG0280009118.01.T01:CDS | 50.0% | |
| GTGTTGCCAATGCCAAGTAG+TGG | + | Chr2:45676963-45676982 | MsG0280009118.01.T01:CDS | 50.0% | |
| TAGGCATGAATGTGGATCCG+AGG | + | Chr2:45676893-45676912 | MsG0280009118.01.T01:CDS | 50.0% | |
| TCACCTCCATTCCCACTACT+TGG | - | Chr2:45676978-45676997 | None:intergenic | 50.0% | |
| TCCACGACGGTATCCGAAAA+GGG | - | Chr2:45676658-45676677 | None:intergenic | 50.0% | |
| TCTAGTGGCACACGTATGGT+GGG | + | Chr2:45676630-45676649 | MsG0280009118.01.T01:CDS | 50.0% | |
| TGGAGTGGTGAGGATTGCAT+TGG | + | Chr2:45676776-45676795 | MsG0280009118.01.T01:CDS | 50.0% | |
| TTCTAGTGGCACACGTATGG+TGG | + | Chr2:45676629-45676648 | MsG0280009118.01.T01:CDS | 50.0% | |
| ! | ATGCCAAGTAGTGGGAATGG+AGG | + | Chr2:45676972-45676991 | MsG0280009118.01.T01:CDS | 50.0% |
| ! | CAGTTCTAGTGGCACACGTA+TGG | + | Chr2:45676626-45676645 | MsG0280009118.01.T01:CDS | 50.0% |
| ! | CCAATGCCAAGTAGTGGGAA+TGG | + | Chr2:45676969-45676988 | MsG0280009118.01.T01:CDS | 50.0% |
| ! | TAGGGAAATGGCTTCTGGAG+TGG | + | Chr2:45676761-45676780 | MsG0280009118.01.T01:CDS | 50.0% |
| !! | AAATGGCTTCTGGAGTGGTG+AGG | + | Chr2:45676766-45676785 | MsG0280009118.01.T01:CDS | 50.0% |
| !! | ATGAACCCTGTTGGTAGTGG+TGG | + | Chr2:45677077-45677096 | MsG0280009118.01.T01:CDS | 50.0% |
| CAGGACCACCACTACCAACA+GGG | - | Chr2:45677085-45677104 | None:intergenic | 55.0% | |
| GTCCACGACGGTATCCGAAA+AGG | - | Chr2:45676659-45676678 | None:intergenic | 55.0% | |
| TCAGGACCACCACTACCAAC+AGG | - | Chr2:45677086-45677105 | None:intergenic | 55.0% | |
| ! | ACCCTTTTCGGATACCGTCG+TGG | + | Chr2:45676654-45676673 | MsG0280009118.01.T01:CDS | 55.0% |
| !!! | CGTATGGTGGGCACCCTTTT+CGG | + | Chr2:45676642-45676661 | MsG0280009118.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 45676318 | 45677133 | 45676318 | ID=MsG0280009118.01;Name=MsG0280009118.01 |
| Chr2 | mRNA | 45676318 | 45677133 | 45676318 | ID=MsG0280009118.01.T01;Parent=MsG0280009118.01;Name=MsG0280009118.01.T01;_AED=0.47;_eAED=0.47;_QI=0|-1|0|1|-1|1|1|0|271 |
| Chr2 | exon | 45676318 | 45677133 | 45676318 | ID=MsG0280009118.01.T01:exon:438;Parent=MsG0280009118.01.T01 |
| Chr2 | CDS | 45676318 | 45677133 | 45676318 | ID=MsG0280009118.01.T01:cds;Parent=MsG0280009118.01.T01 |
| Gene Sequence |
| Protein sequence |
