AlfalfaGEDB | MsG0380012055.01

M. sativa cultivar ZhongmuNo.1 / MsG0380012055.01

KEGG: K02434
GO: GO:0003824 GO:0016874 GO:0016884
PFAM: PF02637 PF02934

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380012055.01.T01	XP_004490131.1	89.13	460	20	2	1	448	95	536	0	820

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380012055.01.T01	B9SQR9	77.007	461	75	3	1	448	107	549	0	729

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380012055.01.T01	A0A1S2XJ49	89.130	460	20	2	1	448	95	536	0.0	820

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180004765.01	MsG0380012055.01	0.813174	2.924830e-51	1.896234e-48
MsG0180006096.01	MsG0380012055.01	0.802236	6.174160e-49	3.008863e-46
MsG0280006601.01	MsG0380012055.01	0.810452	1.144553e-50	6.901590e-48
MsG0280006711.01	MsG0380012055.01	-0.842700	2.203714e-58	3.368595e-55
MsG0280007118.01	MsG0380012055.01	0.801856	7.389594e-49	3.566676e-46
MsG0380012005.01	MsG0380012055.01	0.800660	1.298640e-48	6.081094e-46
MsG0380012007.01	MsG0380012055.01	0.801214	1.000500e-48	4.751185e-46
MsG0380012055.01	MsG0380016191.01	-0.804227	2.389911e-49	1.225534e-46
MsG0380012055.01	MsG0380016820.01	0.809029	2.315603e-50	1.344757e-47
MsG0380012055.01	MsG0380017202.01	0.811284	7.560491e-51	4.660865e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380012055.01.T01	MTR_5g055940	89.083	458	20	2	1	446	103	542	0.0	813

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0380012055.01.T01	AT1G48520	75.163	459	84	2	1	447	109	549	724
MsG0380012055.01.T01	AT1G48520	74.177	395	72	2	1	383	109	485	617
MsG0380012055.01.T01	AT1G48520	73.995	373	67	2	1	361	109	463	587

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Find 104 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTGCCGATGCAAAGC+TGG	0.538518	3:-10221520	MsG0380012055.01.T01:CDS
AAACAGGTTGAGCAATACCG+AGG	0.723621	3:-10220350	MsG0380012055.01.T01:CDS
AACGTATCAGTACGGCCCAT+TGG	0.514772	3:-10222620	MsG0380012055.01.T01:CDS
AAGAAACCCAGAACTCGCAA+TGG	0.602640	3:+10224791	None:intergenic
AAGCTATTGCATACTGAAAA+CGG	0.483622	3:-10224543	MsG0380012055.01.T01:CDS
AATACCATCTACATATTCTT+GGG	0.379988	3:+10222142	None:intergenic
AATATCGCTCATTATCCAGT+TGG	0.615455	3:+10221494	None:intergenic
AATATGCAGCAGAATTACAG+AGG	0.709133	3:-10222706	MsG0380012055.01.T01:CDS
AATGAAGGTATCTAAAGGCA+AGG	0.600642	3:-10220201	MsG0380012055.01.T01:CDS
ACAGAGGTTGGTTAGGTATT+TGG	0.118798	3:-10222690	MsG0380012055.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGCTATTGCATACTGAAAA+CGG	-	Chr3:10220386-10220405	MsG0380012055.01.T01:CDS	30.0%
ACCTGTAATGTCTAATTATC+GGG	-	Chr3:10223817-10223836	MsG0380012055.01.T01:intron	30.0%
ACGTAGAAGATATGAAAAGA+TGG	-	Chr3:10222986-10223005	MsG0380012055.01.T01:intron	30.0%
AGATATGAAAAGATGGGATT+AGG	-	Chr3:10222993-10223012	MsG0380012055.01.T01:intron	30.0%
ATAGAAGGCAAATTCCAAAT+TGG	+	Chr3:10221946-10221965	None:intergenic	30.0%
ATCAATAAAGTTGTTCAGAG+TGG	+	Chr3:10224627-10224646	None:intergenic	30.0%
CAACACATACACAAATAAAG+GGG	-	Chr3:10222006-10222025	MsG0380012055.01.T01:intron	30.0%
CAACTTGATTCTTACATGTT+AGG	-	Chr3:10220642-10220661	MsG0380012055.01.T01:intron	30.0%
CATATTCGATTATCTTGTGT+GGG	-	Chr3:10221747-10221766	MsG0380012055.01.T01:intron	30.0%
CCAACACATACACAAATAAA+GGG	-	Chr3:10222005-10222024	MsG0380012055.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	10220113	10224982	10220113	ID=MsG0380012055.01;Name=MsG0380012055.01
Chr3	mRNA	10220113	10224982	10220113	ID=MsG0380012055.01.T01;Parent=MsG0380012055.01;Name=MsG0380012055.01.T01;_AED=0.36;_eAED=0.36;_QI=0\|0.75\|0.66\|1\|1\|1\|9\|32\|448
Chr3	exon	10220113	10220225	10220113	ID=MsG0380012055.01.T01:exon:1629;Parent=MsG0380012055.01.T01
Chr3	exon	10220313	10220429	10220313	ID=MsG0380012055.01.T01:exon:1628;Parent=MsG0380012055.01.T01
Chr3	exon	10220666	10220734	10220666	ID=MsG0380012055.01.T01:exon:1627;Parent=MsG0380012055.01.T01
Chr3	exon	10221374	10221571	10221374	ID=MsG0380012055.01.T01:exon:1626;Parent=MsG0380012055.01.T01
Chr3	exon	10222043	10222246	10222043	ID=MsG0380012055.01.T01:exon:1625;Parent=MsG0380012055.01.T01
Chr3	exon	10222393	10222497	10222393	ID=MsG0380012055.01.T01:exon:1624;Parent=MsG0380012055.01.T01
Chr3	exon	10222598	10222807	10222598	ID=MsG0380012055.01.T01:exon:1623;Parent=MsG0380012055.01.T01
Chr3	exon	10224530	10224659	10224530	ID=MsG0380012055.01.T01:exon:1622;Parent=MsG0380012055.01.T01
Chr3	exon	10224750	10224982	10224750	ID=MsG0380012055.01.T01:exon:1621;Parent=MsG0380012055.01.T01
Chr3	CDS	10224750	10224982	10224750	ID=MsG0380012055.01.T01:cds;Parent=MsG0380012055.01.T01
Chr3	CDS	10224530	10224659	10224530	ID=MsG0380012055.01.T01:cds;Parent=MsG0380012055.01.T01
Chr3	CDS	10222598	10222807	10222598	ID=MsG0380012055.01.T01:cds;Parent=MsG0380012055.01.T01
Chr3	CDS	10222393	10222497	10222393	ID=MsG0380012055.01.T01:cds;Parent=MsG0380012055.01.T01
Chr3	CDS	10222043	10222246	10222043	ID=MsG0380012055.01.T01:cds;Parent=MsG0380012055.01.T01
Chr3	CDS	10221374	10221571	10221374	ID=MsG0380012055.01.T01:cds;Parent=MsG0380012055.01.T01
Chr3	CDS	10220666	10220734	10220666	ID=MsG0380012055.01.T01:cds;Parent=MsG0380012055.01.T01
Chr3	CDS	10220313	10220429	10220313	ID=MsG0380012055.01.T01:cds;Parent=MsG0380012055.01.T01
Chr3	CDS	10220145	10220225	10220145	ID=MsG0380012055.01.T01:cds;Parent=MsG0380012055.01.T01
Chr3	three_prime_UTR	10220113	10220144	10220113	ID=MsG0380012055.01.T01:three_prime_utr;Parent=MsG0380012055.01.T01

Gene Sequence

>MsG0380012055.01.T01

ATGGGGTTACCAGGTGCTTTACCTGTTATAAACAATAAGGTTATTGAGTTTGCTGTTAAATTAGGACTTGCTCTTAATTGCGAATTGGCGTTTGATTCCAAGTTTGATAGGAAACAATATTTTTATCCTGATTTGCCTAAAGGGTATCAGATTTCGCAATTTGATGTTCCCATTGCGAGTTCTGGGTTTCTTGATGTTGATATTCCCGTGGAGTTTGGTGGGGGGCATAAGAGTTCTGGGTTTCTTGATGTTGATATTCCCGTGGAGTTTGGTGGGGGGCATAAGAGGTTTGGGATTACTAGGGTTCATATGGAAGAGGATGCTGGGAAGCTATTGCATACTGAAAACGGAAATTACTCTCAGGTTGATCTAAATAGGGCAGGGGTACCTTTGCTAGAGATAGTTTCTGAGCCTGACATGAGAAATGGTATTGAAGCAGCAGAATATGCAGCAGAATTACAGAGGTTGGTTAGGTATTTGGGAGTGAGCAATGGCAACATGCAAGAAGGTTCTCTTCGTTGCGATGTAAACGTATCAGTACGGCCCATTGGGCAGTCAAAGTTTGGGACAAAGGTTGAAGTGAAAAATTTGAACTCATTTGCATCAATGAGCAGAGCTATTGATTTTGAAATTTCAAGGCAGGTGCAACTTCACAGTCAAGGTCAAGAAGATCAGATAAGAACTATTACAATGAGAAAAAAGGAAGGGCTTGCTGATTATCGATATTTTCCAGAACCAGACCTTCCATCAGTAATCCTTTCCCAAGAATATGTAGATGGTATTCAAAAAATTTTACCGGAGCTTCCTGAAGAAAAACGTAGAAGATATGAAAAGATGGGATTAGGCATGCAAGATGTTCTTTTCCTAGCTAATGATAAAAATATTGCAGAATTTTTTGATGCTACACTTGCAAAAGGTGCCGATGCAAAGCTGGTTGCCAACTGGATAATGAGCGATATTGCAGCCTTCATGAAAAATGAAAAGTTGACCATAAATGACATTAAGCTTACACCTGAAGAGTTAGCTGCGTTGATTGCTTCCATTAAAGGTGGAACCATCAGTGGAAAGATCGGAAAGGAGATACTATTTGAGCTGTTAGCCAAGGGTGGAAGTGTCAAGGAGCTCATTGAAAAAAATGACTTGGTTCAGATAGCAGATCCTGTTGAAATTGAAAAAATGGTTGACAAAGTGATTGCAGATAATCCGAAACAGGTTGAGCAATACCGAGGAGGCAAAACGAAACTCCAAGGTTTTTTTGCTGGTCAGGTAATGAAGGTATCTAAAGGCAAGGCAAATCCAGGTCTACTTAACAAGATTCTCTTGGAGAAATTGAATTCAAAAAGCTGA

Protein sequence

>MsG0380012055.01.T01

MGLPGALPVINNKVIEFAVKLGLALNCELAFDSKFDRKQYFYPDLPKGYQISQFDVPIASSGFLDVDIPVEFGGGHKSSGFLDVDIPVEFGGGHKRFGITRVHMEEDAGKLLHTENGNYSQVDLNRAGVPLLEIVSEPDMRNGIEAAEYAAELQRLVRYLGVSNGNMQEGSLRCDVNVSVRPIGQSKFGTKVEVKNLNSFASMSRAIDFEISRQVQLHSQGQEDQIRTITMRKKEGLADYRYFPEPDLPSVILSQEYVDGIQKILPELPEEKRRRYEKMGLGMQDVLFLANDKNIAEFFDATLAKGADAKLVANWIMSDIAAFMKNEKLTINDIKLTPEELAALIASIKGGTISGKIGKEILFELLAKGGSVKELIEKNDLVQIADPVEIEKMVDKVIADNPKQVEQYRGGKTKLQGFFAGQVMKVSKGKANPGLLNKILLEKLNSKS*