AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023073.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023073.01.T01 MTR_8g086060 96.023 352 13 1 1 351 1 352 0.0 692
MsG0480023073.01.T01 MTR_1g115235 35.176 199 113 5 155 340 120 315 5.55e-30 117
MsG0480023073.01.T01 MTR_1g115235 33.523 176 101 5 155 317 120 292 4.94e-21 92.4
MsG0480023073.01.T01 MTR_1g115235 33.571 140 77 5 155 281 120 256 2.25e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023073.01.T01 AT4G28590 54.545 330 111 6 25 343 22 323 2.96e-117 343
MsG0480023073.01.T01 AT2G31840 41.436 181 89 5 173 339 152 329 7.83e-33 125
MsG0480023073.01.T01 AT2G31840 41.436 181 89 5 173 339 152 329 7.83e-33 125

Find 103 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTAACTACTTACTATAAT+TGG 0.049381 4:-80437649 None:intergenic
GAGGACATTCTCGAACTTTC+AGG 0.153863 4:-80439644 None:intergenic
GTTTCTATCATCCTTATTAA+TGG 0.262268 4:-80437985 None:intergenic
TCAATTTCTATTCAACAAAA+TGG 0.264433 4:+80437740 MsG0480023073.01.T01:exon
ATTAACTACTTACTATAATT+GGG 0.280895 4:-80437648 None:intergenic
ACAGAACATGATATTGAAAT+AGG 0.292782 4:-80437861 None:intergenic
AAGGGGAGACTGAGGATAAC+TGG 0.300402 4:+80438405 MsG0480023073.01.T01:CDS
CGACCGCGCCTTGGCTTCCT+TGG 0.304224 4:-80438035 None:intergenic
CTATCATCATTGCTGCGTTT+TGG 0.305949 4:-80438203 None:intergenic
AAGAATCTCGAATGAGAAAA+AGG 0.321782 4:-80437801 None:intergenic
TGTAGGATTAGGTTCGGGTT+CGG 0.333557 4:-80437907 None:intergenic
GTAGGATTAGGTTCGGGTTC+GGG 0.335867 4:-80437906 None:intergenic
GGCTTCCTTGGAATTGTTGT+TGG 0.353522 4:-80438023 None:intergenic
TGAATAGAAATTGAAAACTA+TGG 0.357982 4:-80437731 None:intergenic
GCAACAAAATGCGGGTGCTT+TGG 0.363915 4:+80438127 MsG0480023073.01.T01:CDS
TCCACAGGGCAAATGATAAC+TGG 0.371102 4:+80439254 MsG0480023073.01.T01:intron
GGCTACAACAAGGTATATAT+TGG 0.374384 4:+80437580 MsG0480023073.01.T01:five_prime_UTR
TTTGGATGTAGGATTAGGTT+CGG 0.375242 4:-80437913 None:intergenic
AGAAACGAGCTAGGAGAAAG+AGG 0.387324 4:+80437526 MsG0480023073.01.T01:five_prime_UTR
GGTGCAGGAGATCAATTGTT+TGG 0.409092 4:+80438427 MsG0480023073.01.T01:CDS
AGAGCTGGAGAAAGCAATAA+AGG 0.432889 4:+80439288 MsG0480023073.01.T01:CDS
TGGAGAGAAGGCGGTGATTG+AGG 0.436030 4:+80438262 MsG0480023073.01.T01:CDS
TCTCCTACTACATTCTTAAT+CGG 0.436541 4:-80438359 None:intergenic
TTGGAGGCATAAGAGCTGTT+TGG 0.439142 4:-80437770 None:intergenic
GCCTGCATGGATTGATGATA+AGG 0.442007 4:+80439913 MsG0480023073.01.T01:CDS
TAGAAATTGAAAACTATGGT+TGG 0.446812 4:-80437727 None:intergenic
GGAAGATGGTGGTGGAGAGA+AGG 0.455976 4:+80438250 MsG0480023073.01.T01:CDS
CCTCGTAGAAACAAAATTTG+AGG 0.457143 4:-80439663 None:intergenic
AGGACATTCTCGAACTTTCA+GGG 0.462386 4:-80439643 None:intergenic
ATGATGGTGCTGAAATTGAT+TGG 0.468138 4:+80438381 MsG0480023073.01.T01:CDS
AGAAAGCAATAAAGGTGTAC+TGG 0.471230 4:+80439296 MsG0480023073.01.T01:CDS
AAGATGGTGTACAGGGAGAA+AGG 0.474258 4:+80439690 MsG0480023073.01.T01:CDS
TGAGGAGGAGGTGGAAGAAG+AGG 0.474972 4:+80438229 MsG0480023073.01.T01:CDS
AGATGGTGTGACCATTAATA+AGG 0.476275 4:+80437974 MsG0480023073.01.T01:CDS
AGAACACGTTTGCTGCAATT+CGG 0.476704 4:+80438105 MsG0480023073.01.T01:CDS
AGAAATTGAAAACTATGGTT+GGG 0.477543 4:-80437726 None:intergenic
AGAGAGTGAGAGCTGGCCAT+TGG 0.480727 4:+80438286 MsG0480023073.01.T01:CDS
CATCCGATTAAGAATGTAGT+AGG 0.483008 4:+80438356 MsG0480023073.01.T01:CDS
AATGTGATGAGTAGATAAAG+TGG 0.489173 4:-80437832 None:intergenic
CTAAAGATCGGTTACCTCCC+AGG 0.492013 4:+80439323 MsG0480023073.01.T01:CDS
TTGGATGTAGGATTAGGTTC+GGG 0.492104 4:-80437912 None:intergenic
GAGGGAATAAGATGGTGTAC+AGG 0.495962 4:+80439682 MsG0480023073.01.T01:CDS
CATTGGATACGGATGTCGGG+TGG 0.496433 4:+80438303 MsG0480023073.01.T01:CDS
ACTCAGAACTGCGGATGAGC+TGG 0.496745 4:+80439853 MsG0480023073.01.T01:CDS
GAAGAAGAGGAAGATGGTGG+TGG 0.502013 4:+80438242 MsG0480023073.01.T01:CDS
TGATGGTGCTGAAATTGATT+GGG 0.506693 4:+80438382 MsG0480023073.01.T01:CDS
GCAATTCGGCAACAAAATGC+GGG 0.507031 4:+80438119 MsG0480023073.01.T01:CDS
TGGCCATTGGATACGGATGT+CGG 0.507521 4:+80438299 MsG0480023073.01.T01:CDS
TGAGAGCTGGCCATTGGATA+CGG 0.507959 4:+80438292 MsG0480023073.01.T01:CDS
GGCCATTGGATACGGATGTC+GGG 0.512837 4:+80438300 MsG0480023073.01.T01:CDS
AAGAAGCTTCTGAGAAGAGA+AGG 0.518975 4:-80437605 None:intergenic
GACTGAGGATAACTGGGTGC+AGG 0.519180 4:+80438412 MsG0480023073.01.T01:CDS
TGATAGTGATGAGGAGGAGG+TGG 0.520072 4:+80438220 MsG0480023073.01.T01:CDS
ACAAGTACGATTAAAGGGCT+AGG 0.524252 4:-80438473 None:intergenic
GGAGATCAATTGTTTGGAGT+GGG 0.524391 4:+80438433 MsG0480023073.01.T01:CDS
TTAACTACTTACTATAATTG+GGG 0.524499 4:-80437647 None:intergenic
CATTAACATCGAGAAAGACT+TGG 0.524986 4:+80439614 MsG0480023073.01.T01:CDS
GTACGATTAAAGGGCTAGGA+TGG 0.528482 4:-80438469 None:intergenic
AAGAATGTAGTAGGAGATGA+TGG 0.528915 4:+80438365 MsG0480023073.01.T01:CDS
GAAACGAGCTAGGAGAAAGA+GGG 0.529344 4:+80437527 MsG0480023073.01.T01:five_prime_UTR
GTGCTGAAATTGATTGGGAA+GGG 0.532847 4:+80438387 MsG0480023073.01.T01:CDS
AAAAGTTTCCAACGTGGAGA+TGG 0.538979 4:+80437957 MsG0480023073.01.T01:CDS
TGCTGAAATTGATTGGGAAG+GGG 0.540914 4:+80438388 MsG0480023073.01.T01:CDS
CAACAATTCCAAGGAAGCCA+AGG 0.541191 4:+80438027 MsG0480023073.01.T01:CDS
GAGGTGGAAGAAGAGGAAGA+TGG 0.541968 4:+80438236 MsG0480023073.01.T01:CDS
AGATGGTGGTGGAGAGAAGG+CGG 0.543685 4:+80438253 MsG0480023073.01.T01:CDS
ATTGGATACGGATGTCGGGT+GGG 0.544540 4:+80438304 MsG0480023073.01.T01:CDS
TGCAATTCGGCAACAAAATG+CGG 0.545718 4:+80438118 MsG0480023073.01.T01:CDS
TTGGATACGGATGTCGGGTG+GGG 0.546849 4:+80438305 MsG0480023073.01.T01:CDS
TGATTGGGAAGGGGAGACTG+AGG 0.550882 4:+80438397 MsG0480023073.01.T01:CDS
GTGGAAGAAGAGGAAGATGG+TGG 0.551552 4:+80438239 MsG0480023073.01.T01:CDS
TTAATGTCACATGGTCCTTG+TGG 0.558893 4:+80439964 MsG0480023073.01.T01:three_prime_UTR
GCCTTATCATCAATCCATGC+AGG 0.566180 4:-80439914 None:intergenic
GTTTCTACGAGGGAATAAGA+TGG 0.569954 4:+80439674 MsG0480023073.01.T01:CDS
GAATCATAAAGATATAATGA+AGG 0.574940 4:+80438151 MsG0480023073.01.T01:CDS
TGATGATAGTGATGAGGAGG+AGG 0.575455 4:+80438217 MsG0480023073.01.T01:CDS
AATTTCCAACAACAATTCCA+AGG 0.578397 4:+80438018 MsG0480023073.01.T01:CDS
TTGAGGAAGAGAGTGAGAGC+TGG 0.578485 4:+80438279 MsG0480023073.01.T01:CDS
AGGGGAGACTGAGGATAACT+GGG 0.579701 4:+80438406 MsG0480023073.01.T01:CDS
AGGAGATCAATTGTTTGGAG+TGG 0.582911 4:+80438432 MsG0480023073.01.T01:CDS
CAATTAATAACGTAAATACA+AGG 0.583174 4:-80439936 None:intergenic
CACCCGACATCCGTATCCAA+TGG 0.587765 4:-80438302 None:intergenic
GGTGCTGAAATTGATTGGGA+AGG 0.593647 4:+80438386 MsG0480023073.01.T01:CDS
ACAATGCAAAGAAGCCTGCA+TGG 0.600174 4:+80439900 MsG0480023073.01.T01:CDS
TAAAGATCGGTTACCTCCCA+GGG 0.600728 4:+80439324 MsG0480023073.01.T01:CDS
CAATGATGATAGTGATGAGG+AGG 0.605683 4:+80438214 MsG0480023073.01.T01:CDS
GATATAATGAAGGACAGTGT+CGG 0.611630 4:+80438161 MsG0480023073.01.T01:CDS
TGTACTGGAGTGCTAAAGAT+CGG 0.614574 4:+80439311 MsG0480023073.01.T01:CDS
AGGGAATAAGATGGTGTACA+GGG 0.616347 4:+80439683 MsG0480023073.01.T01:CDS
GTAGAACATTCAAATAGTCA+CGG 0.620983 4:+80437559 MsG0480023073.01.T01:five_prime_UTR
TATAGAATTGCAGTGCCACA+AGG 0.627861 4:-80439979 None:intergenic
AAATAGTCACGGCTACAACA+AGG 0.656837 4:+80437570 MsG0480023073.01.T01:five_prime_UTR
CAGCAATGATGATAGTGATG+AGG 0.657518 4:+80438211 MsG0480023073.01.T01:CDS
ATTCCAAGGAAGCCAAGGCG+CGG 0.658601 4:+80438032 MsG0480023073.01.T01:CDS
CAGTTGGTGCTCAAAACACG+CGG 0.659680 4:-80437690 None:intergenic
TAAATTGACCATACCCTGGG+AGG 0.668151 4:-80439337 None:intergenic
AAGGCGCGGTCGTAAAAGTG+AGG 0.675835 4:+80438046 MsG0480023073.01.T01:CDS
TAAGGATGATAGAAACTCTG+AGG 0.680715 4:+80437992 MsG0480023073.01.T01:CDS
TGGTCACACCATCTCCACGT+TGG 0.708792 4:-80437965 None:intergenic
CTTTGCAGAACTCAGAACTG+CGG 0.713652 4:+80439844 MsG0480023073.01.T01:intron
TAAAAGATCTTATACATACG+TGG 0.722750 4:+80437454 None:intergenic
AGTTGGTGCTCAAAACACGC+GGG 0.733885 4:-80437689 None:intergenic
AAGGGGAAAAGTTTCCAACG+TGG 0.792116 4:+80437951 MsG0480023073.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAAAAACTGAAAAATAA+GGG + Chr4:80437933-80437952 MsG0480023073.01.T01:CDS 15.0%
!! AATTAACTACTTACTATAAT+TGG - Chr4:80437652-80437671 None:intergenic 15.0%
!! ATTAACTACTTACTATAATT+GGG - Chr4:80437651-80437670 None:intergenic 15.0%
!! TACTAATTCATATTCTTATA+TGG + Chr4:80438518-80438537 MsG0480023073.01.T01:intron 15.0%
!! TAGTTATATATACTTGAAAT+CGG + Chr4:80438633-80438652 MsG0480023073.01.T01:intron 15.0%
!!! AATAAATTACAATCATCTTT+TGG - Chr4:80438837-80438856 None:intergenic 15.0%
!!! ATAAATTACAATCATCTTTT+GGG - Chr4:80438836-80438855 None:intergenic 15.0%
!!! ATCATTTTTTTTTTCATTTC+AGG - Chr4:80439404-80439423 None:intergenic 15.0%
!! AACAAAAACTGAAAAATAAG+GGG + Chr4:80437934-80437953 MsG0480023073.01.T01:CDS 20.0%
!! AGTTATATATACTTGAAATC+GGG + Chr4:80438634-80438653 MsG0480023073.01.T01:intron 20.0%
!! CAAACAAAAACTGAAAAATA+AGG + Chr4:80437932-80437951 MsG0480023073.01.T01:CDS 20.0%
!! CAATTAATAACGTAAATACA+AGG - Chr4:80439939-80439958 None:intergenic 20.0%
!! GAATCATAAAGATATAATGA+AGG + Chr4:80438151-80438170 MsG0480023073.01.T01:CDS 20.0%
!! TACTTTAAATTTCCTATTGT+AGG + Chr4:80439578-80439597 MsG0480023073.01.T01:intron 20.0%
!! TCAATTTCTATTCAACAAAA+TGG + Chr4:80437740-80437759 MsG0480023073.01.T01:exon 20.0%
!! TGAATAGAAATTGAAAACTA+TGG - Chr4:80437734-80437753 None:intergenic 20.0%
!! TTAACTACTTACTATAATTG+GGG - Chr4:80437650-80437669 None:intergenic 20.0%
!!! ATTGTTTTTTTAATGTCACA+TGG + Chr4:80439955-80439974 MsG0480023073.01.T01:exon 20.0%
!!! CTTATTTTTCAGTTTTTGTT+TGG - Chr4:80437934-80437953 None:intergenic 20.0%
!!! TTTAAAGTAATACGTGATTA+TGG - Chr4:80439567-80439586 None:intergenic 20.0%
! AAAGACATCTTAAAAGCAAA+AGG - Chr4:80438809-80438828 None:intergenic 25.0%
! ACAGAACATGATATTGAAAT+AGG - Chr4:80437864-80437883 None:intergenic 25.0%
! AGAAATTGAAAACTATGGTT+GGG - Chr4:80437729-80437748 None:intergenic 25.0%
! CAAAAACAAGTACGATTAAA+GGG - Chr4:80438481-80438500 None:intergenic 25.0%
! CTGATAAATAACAGAAAAGA+TGG - Chr4:80439486-80439505 None:intergenic 25.0%
! GATGATTGTAATTTATTCGT+AGG + Chr4:80438840-80438859 MsG0480023073.01.T01:intron 25.0%
! GTTTCTATCATCCTTATTAA+TGG - Chr4:80437988-80438007 None:intergenic 25.0%
! TAGAAATTGAAAACTATGGT+TGG - Chr4:80437730-80437749 None:intergenic 25.0%
! TCAAAAACAAGTACGATTAA+AGG - Chr4:80438482-80438501 None:intergenic 25.0%
! TTATAACGCAAAAAACCAAT+AGG + Chr4:80438872-80438891 MsG0480023073.01.T01:intron 25.0%
!! GATTTAGCTATAAGTTTTTG+GGG - Chr4:80439208-80439227 None:intergenic 25.0%
!! GGATTTAGCTATAAGTTTTT+GGG - Chr4:80439209-80439228 None:intergenic 25.0%
!! TGGATTTAGCTATAAGTTTT+TGG - Chr4:80439210-80439229 None:intergenic 25.0%
!!! AAGCATAGTTTTGTTTGTTT+TGG + Chr4:80439756-80439775 MsG0480023073.01.T01:intron 25.0%
!!! TTTGATTTTGTTATTCCACA+GGG + Chr4:80439240-80439259 MsG0480023073.01.T01:intron 25.0%
AAAATAAATTGACCATACCC+TGG - Chr4:80439344-80439363 None:intergenic 30.0%
AAATAAATTGACCATACCCT+GGG - Chr4:80439343-80439362 None:intergenic 30.0%
AACTCTAGACTCAGATTAAT+CGG + Chr4:80438683-80438702 MsG0480023073.01.T01:intron 30.0%
AAGAATCTCGAATGAGAAAA+AGG - Chr4:80437804-80437823 None:intergenic 30.0%
AATGTGATGAGTAGATAAAG+TGG - Chr4:80437835-80437854 None:intergenic 30.0%
AATTCCAACATAGGTAACTT+GGG - Chr4:80439042-80439061 None:intergenic 30.0%
AATTTCCAACAACAATTCCA+AGG + Chr4:80438018-80438037 MsG0480023073.01.T01:CDS 30.0%
CTTCTATGCTAAGTGTTTAA+TGG + Chr4:80438596-80438615 MsG0480023073.01.T01:intron 30.0%
GTAGAACATTCAAATAGTCA+CGG + Chr4:80437559-80437578 MsG0480023073.01.T01:five_prime_UTR 30.0%
TAATTCCAACATAGGTAACT+TGG - Chr4:80439043-80439062 None:intergenic 30.0%
TCTCCTACTACATTCTTAAT+CGG - Chr4:80438362-80438381 None:intergenic 30.0%
TGAATAGTCTCACATTAGTT+AGG + Chr4:80439072-80439091 MsG0480023073.01.T01:intron 30.0%
! TTATAGCTAAATCCAGCTTT+TGG + Chr4:80439215-80439234 MsG0480023073.01.T01:intron 30.0%
!! GGGTAATTTTAACAAACAGT+TGG - Chr4:80437709-80437728 None:intergenic 30.0%
!! TTCAGTTTTTGTTTGGATGT+AGG - Chr4:80437927-80437946 None:intergenic 30.0%
!! TTTTGTTTGGATGTAGGATT+AGG - Chr4:80437921-80437940 None:intergenic 30.0%
!!! CTCAAATTTTGTTTCTACGA+GGG + Chr4:80439664-80439683 MsG0480023073.01.T01:CDS 30.0%
!!! GTTTGATTTTGTTATTCCAC+AGG + Chr4:80439239-80439258 MsG0480023073.01.T01:intron 30.0%
!!! TCGCATTTTAATTCCAACAT+AGG - Chr4:80439051-80439070 None:intergenic 30.0%
!!! TTGTTTTTGAACGCTATAAC+AGG + Chr4:80438492-80438511 MsG0480023073.01.T01:CDS 30.0%
!!! TTTTGTTTGTTTTGGCAACA+AGG + Chr4:80439764-80439783 MsG0480023073.01.T01:intron 30.0%
AAAACCAATAGGTCGAATGT+AGG + Chr4:80438883-80438902 MsG0480023073.01.T01:intron 35.0%
AAGAATGTAGTAGGAGATGA+TGG + Chr4:80438365-80438384 MsG0480023073.01.T01:CDS 35.0%
AATTCCCAAGTTACCTATGT+TGG + Chr4:80439035-80439054 MsG0480023073.01.T01:intron 35.0%
AGATGGTGTGACCATTAATA+AGG + Chr4:80437974-80437993 MsG0480023073.01.T01:CDS 35.0%
AGTCTCACATTAGTTAGGAT+TGG + Chr4:80439077-80439096 MsG0480023073.01.T01:intron 35.0%
CAAAATCAAACACCAAAAGC+TGG - Chr4:80439230-80439249 None:intergenic 35.0%
CAATCTTAATCGCCTACAAT+AGG - Chr4:80439593-80439612 None:intergenic 35.0%
CATCCGATTAAGAATGTAGT+AGG + Chr4:80438356-80438375 MsG0480023073.01.T01:CDS 35.0%
CATTAACATCGAGAAAGACT+TGG + Chr4:80439614-80439633 MsG0480023073.01.T01:CDS 35.0%
CCTCGTAGAAACAAAATTTG+AGG - Chr4:80439666-80439685 None:intergenic 35.0%
CTGGAAAAATTTGAAAGAGC+TGG + Chr4:80439273-80439292 MsG0480023073.01.T01:CDS 35.0%
GATATAATGAAGGACAGTGT+CGG + Chr4:80438161-80438180 MsG0480023073.01.T01:CDS 35.0%
GCTTATTGTACACACATTGA+AGG - Chr4:80439740-80439759 None:intergenic 35.0%
GGCTACAACAAGGTATATAT+TGG + Chr4:80437580-80437599 MsG0480023073.01.T01:five_prime_UTR 35.0%
GTCTCACATTAGTTAGGATT+GGG + Chr4:80439078-80439097 MsG0480023073.01.T01:intron 35.0%
TAAGGATGATAGAAACTCTG+AGG + Chr4:80437992-80438011 MsG0480023073.01.T01:CDS 35.0%
TAGTGAGTGATCATGAAGTA+AGG - Chr4:80439449-80439468 None:intergenic 35.0%
TATTCCTACATTCGACCTAT+TGG - Chr4:80438890-80438909 None:intergenic 35.0%
TTACCAAAAAGAAACGAGCT+AGG + Chr4:80437517-80437536 MsG0480023073.01.T01:five_prime_UTR 35.0%
TTTGGATGTAGGATTAGGTT+CGG - Chr4:80437916-80437935 None:intergenic 35.0%
! AGAAAGCAATAAAGGTGTAC+TGG + Chr4:80439296-80439315 MsG0480023073.01.T01:CDS 35.0%
! ATGATGGTGCTGAAATTGAT+TGG + Chr4:80438381-80438400 MsG0480023073.01.T01:CDS 35.0%
! TGATGGTGCTGAAATTGATT+GGG + Chr4:80438382-80438401 MsG0480023073.01.T01:CDS 35.0%
!! TAGCTCGTTTCTTTTTGGTA+AGG - Chr4:80437518-80437537 None:intergenic 35.0%
!!! CCTCAAATTTTGTTTCTACG+AGG + Chr4:80439663-80439682 MsG0480023073.01.T01:CDS 35.0%
AAAAGTTTCCAACGTGGAGA+TGG + Chr4:80437957-80437976 MsG0480023073.01.T01:CDS 40.0%
AAATAGTCACGGCTACAACA+AGG + Chr4:80437570-80437589 MsG0480023073.01.T01:five_prime_UTR 40.0%
ACAAGTACGATTAAAGGGCT+AGG - Chr4:80438476-80438495 None:intergenic 40.0%
AGAGCTGGAGAAAGCAATAA+AGG + Chr4:80439288-80439307 MsG0480023073.01.T01:CDS 40.0%
AGCAACAGTGCATCATTATG+AGG - Chr4:80439819-80439838 None:intergenic 40.0%
AGGACATTCTCGAACTTTCA+GGG - Chr4:80439646-80439665 None:intergenic 40.0%
AGGAGATCAATTGTTTGGAG+TGG + Chr4:80438432-80438451 MsG0480023073.01.T01:CDS 40.0%
AGGGAATAAGATGGTGTACA+GGG + Chr4:80439683-80439702 MsG0480023073.01.T01:CDS 40.0%
CAGTACACAAGTGTTACAAG+CGG + Chr4:80439503-80439522 MsG0480023073.01.T01:intron 40.0%
GTGCTGAAATTGATTGGGAA+GGG + Chr4:80438387-80438406 MsG0480023073.01.T01:CDS 40.0%
GTTTCTACGAGGGAATAAGA+TGG + Chr4:80439674-80439693 MsG0480023073.01.T01:CDS 40.0%
TATAGAATTGCAGTGCCACA+AGG - Chr4:80439982-80440001 None:intergenic 40.0%
TGAGAAAAAGGTGAGAACGT+TGG - Chr4:80437792-80437811 None:intergenic 40.0%
TGCAATTCGGCAACAAAATG+CGG + Chr4:80438118-80438137 MsG0480023073.01.T01:CDS 40.0%
TGCTGAAATTGATTGGGAAG+GGG + Chr4:80438388-80438407 MsG0480023073.01.T01:CDS 40.0%
TTAATGTCACATGGTCCTTG+TGG + Chr4:80439964-80439983 MsG0480023073.01.T01:three_prime_UTR 40.0%
TTGGATGTAGGATTAGGTTC+GGG - Chr4:80437915-80437934 None:intergenic 40.0%
! AAGAAGCTTCTGAGAAGAGA+AGG - Chr4:80437608-80437627 None:intergenic 40.0%
! AAGAGACTCCAGGTGTTATA+TGG - Chr4:80439537-80439556 None:intergenic 40.0%
! AGAACACGTTTGCTGCAATT+CGG + Chr4:80438105-80438124 MsG0480023073.01.T01:CDS 40.0%
! CAATGATGATAGTGATGAGG+AGG + Chr4:80438214-80438233 MsG0480023073.01.T01:CDS 40.0%
! CAGCAATGATGATAGTGATG+AGG + Chr4:80438211-80438230 MsG0480023073.01.T01:CDS 40.0%
! CTATCATCATTGCTGCGTTT+TGG - Chr4:80438206-80438225 None:intergenic 40.0%
! GGAGATCAATTGTTTGGAGT+GGG + Chr4:80438433-80438452 MsG0480023073.01.T01:CDS 40.0%
! TCTCCTAGCTCGTTTCTTTT+TGG - Chr4:80437523-80437542 None:intergenic 40.0%
! TGTACTGGAGTGCTAAAGAT+CGG + Chr4:80439311-80439330 MsG0480023073.01.T01:CDS 40.0%
AAGATGGTGTACAGGGAGAA+AGG + Chr4:80439690-80439709 MsG0480023073.01.T01:CDS 45.0%
AAGGGGAAAAGTTTCCAACG+TGG + Chr4:80437951-80437970 MsG0480023073.01.T01:CDS 45.0%
ACAATGCAAAGAAGCCTGCA+TGG + Chr4:80439900-80439919 MsG0480023073.01.T01:CDS 45.0%
AGAAACGAGCTAGGAGAAAG+AGG + Chr4:80437526-80437545 MsG0480023073.01.T01:five_prime_UTR 45.0%
CAACAATTCCAAGGAAGCCA+AGG + Chr4:80438027-80438046 MsG0480023073.01.T01:CDS 45.0%
CTTTGCAGAACTCAGAACTG+CGG + Chr4:80439844-80439863 MsG0480023073.01.T01:intron 45.0%
GAAAAAGGTGAGAACGTTGG+AGG - Chr4:80437789-80437808 None:intergenic 45.0%
GAAACGAGCTAGGAGAAAGA+GGG + Chr4:80437527-80437546 MsG0480023073.01.T01:five_prime_UTR 45.0%
GAGGACATTCTCGAACTTTC+AGG - Chr4:80439647-80439666 None:intergenic 45.0%
GAGGGAATAAGATGGTGTAC+AGG + Chr4:80439682-80439701 MsG0480023073.01.T01:CDS 45.0%
GCAATTCGGCAACAAAATGC+GGG + Chr4:80438119-80438138 MsG0480023073.01.T01:CDS 45.0%
GCCTTATCATCAATCCATGC+AGG - Chr4:80439917-80439936 None:intergenic 45.0%
GGCTTCCTTGGAATTGTTGT+TGG - Chr4:80438026-80438045 None:intergenic 45.0%
GGTGCAGGAGATCAATTGTT+TGG + Chr4:80438427-80438446 MsG0480023073.01.T01:CDS 45.0%
GTACGATTAAAGGGCTAGGA+TGG - Chr4:80438472-80438491 None:intergenic 45.0%
TAAAGATCGGTTACCTCCCA+GGG + Chr4:80439324-80439343 MsG0480023073.01.T01:CDS 45.0%
TAAATTGACCATACCCTGGG+AGG - Chr4:80439340-80439359 None:intergenic 45.0%
TAACCTCGCCATATAACACC+TGG + Chr4:80439526-80439545 MsG0480023073.01.T01:intron 45.0%
TCCACAGGGCAAATGATAAC+TGG + Chr4:80439254-80439273 MsG0480023073.01.T01:intron 45.0%
TCCAGTTATCATTTGCCCTG+TGG - Chr4:80439258-80439277 None:intergenic 45.0%
TGGAAAACGTAAGAGACTCC+AGG - Chr4:80439547-80439566 None:intergenic 45.0%
TTGGGGAGTCTAGAAACATC+AGG - Chr4:80439191-80439210 None:intergenic 45.0%
! AGATTTTGTACGCGACAGAC+TGG + Chr4:80438082-80438101 MsG0480023073.01.T01:CDS 45.0%
! GCCTGCATGGATTGATGATA+AGG + Chr4:80439913-80439932 MsG0480023073.01.T01:CDS 45.0%
! GGTGCTGAAATTGATTGGGA+AGG + Chr4:80438386-80438405 MsG0480023073.01.T01:CDS 45.0%
! TGATGATAGTGATGAGGAGG+AGG + Chr4:80438217-80438236 MsG0480023073.01.T01:CDS 45.0%
! TGTAGGATTAGGTTCGGGTT+CGG - Chr4:80437910-80437929 None:intergenic 45.0%
! TTGGAGGCATAAGAGCTGTT+TGG - Chr4:80437773-80437792 None:intergenic 45.0%
!! TAAATAAATGATATATAAAA+AGG + Chr4:80439102-80439121 MsG0480023073.01.T01:intron 5.0%
AAGGGGAGACTGAGGATAAC+TGG + Chr4:80438405-80438424 MsG0480023073.01.T01:CDS 50.0%
AGGGGAGACTGAGGATAACT+GGG + Chr4:80438406-80438425 MsG0480023073.01.T01:CDS 50.0%
ATTGGATACGGATGTCGGGT+GGG + Chr4:80438304-80438323 MsG0480023073.01.T01:CDS 50.0%
CTAAAGATCGGTTACCTCCC+AGG + Chr4:80439323-80439342 MsG0480023073.01.T01:CDS 50.0%
GAGGTGGAAGAAGAGGAAGA+TGG + Chr4:80438236-80438255 MsG0480023073.01.T01:CDS 50.0%
GCAACAAAATGCGGGTGCTT+TGG + Chr4:80438127-80438146 MsG0480023073.01.T01:CDS 50.0%
GTGGAAGAAGAGGAAGATGG+TGG + Chr4:80438239-80438258 MsG0480023073.01.T01:CDS 50.0%
TGAGAGCTGGCCATTGGATA+CGG + Chr4:80438292-80438311 MsG0480023073.01.T01:CDS 50.0%
TGGCCATTGGATACGGATGT+CGG + Chr4:80438299-80438318 MsG0480023073.01.T01:CDS 50.0%
TTGAGGAAGAGAGTGAGAGC+TGG + Chr4:80438279-80438298 MsG0480023073.01.T01:CDS 50.0%
! ACTCCAGGTGTTATATGGCG+AGG - Chr4:80439532-80439551 None:intergenic 50.0%
! AGTTGGTGCTCAAAACACGC+GGG - Chr4:80437692-80437711 None:intergenic 50.0%
! CAGTTGGTGCTCAAAACACG+CGG - Chr4:80437693-80437712 None:intergenic 50.0%
! GAAGAAGAGGAAGATGGTGG+TGG + Chr4:80438242-80438261 MsG0480023073.01.T01:CDS 50.0%
! GTAGGATTAGGTTCGGGTTC+GGG - Chr4:80437909-80437928 None:intergenic 50.0%
! TGATAGTGATGAGGAGGAGG+TGG + Chr4:80438220-80438239 MsG0480023073.01.T01:CDS 50.0%
AAGGCGCGGTCGTAAAAGTG+AGG + Chr4:80438046-80438065 MsG0480023073.01.T01:CDS 55.0%
ACTCAGAACTGCGGATGAGC+TGG + Chr4:80439853-80439872 MsG0480023073.01.T01:CDS 55.0%
AGAGAGTGAGAGCTGGCCAT+TGG + Chr4:80438286-80438305 MsG0480023073.01.T01:CDS 55.0%
ATCGGTTACCTCCCAGGGTA+TGG + Chr4:80439329-80439348 MsG0480023073.01.T01:intron 55.0%
ATTCCAAGGAAGCCAAGGCG+CGG + Chr4:80438032-80438051 MsG0480023073.01.T01:CDS 55.0%
CACCCGACATCCGTATCCAA+TGG - Chr4:80438305-80438324 None:intergenic 55.0%
CATTGGATACGGATGTCGGG+TGG + Chr4:80438303-80438322 MsG0480023073.01.T01:CDS 55.0%
GACTGAGGATAACTGGGTGC+AGG + Chr4:80438412-80438431 MsG0480023073.01.T01:CDS 55.0%
GGCCATTGGATACGGATGTC+GGG + Chr4:80438300-80438319 MsG0480023073.01.T01:CDS 55.0%
TGAGGAGGAGGTGGAAGAAG+AGG + Chr4:80438229-80438248 MsG0480023073.01.T01:CDS 55.0%
TGATTGGGAAGGGGAGACTG+AGG + Chr4:80438397-80438416 MsG0480023073.01.T01:CDS 55.0%
TGGAGAGAAGGCGGTGATTG+AGG + Chr4:80438262-80438281 MsG0480023073.01.T01:CDS 55.0%
TGGTCACACCATCTCCACGT+TGG - Chr4:80437968-80437987 None:intergenic 55.0%
TTGGATACGGATGTCGGGTG+GGG + Chr4:80438305-80438324 MsG0480023073.01.T01:CDS 55.0%
! CTGAGTCTAGAGTTGCACGC+AGG - Chr4:80438677-80438696 None:intergenic 55.0%
!! AGATGGTGGTGGAGAGAAGG+CGG + Chr4:80438253-80438272 MsG0480023073.01.T01:CDS 55.0%
!! GGAAGATGGTGGTGGAGAGA+AGG + Chr4:80438250-80438269 MsG0480023073.01.T01:CDS 55.0%
!! TCACTTTTACGACCGCGCCT+TGG - Chr4:80438047-80438066 None:intergenic 55.0%
CGACCGCGCCTTGGCTTCCT+TGG - Chr4:80438038-80438057 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 80437465 80440048 80437465 ID=MsG0480023073.01;Name=MsG0480023073.01
Chr4 mRNA 80437465 80440048 80437465 ID=MsG0480023073.01.T01;Parent=MsG0480023073.01;Name=MsG0480023073.01.T01;_AED=0.46;_eAED=0.46;_QI=294|1|1|1|1|1|4|93|351
Chr4 exon 80437465 80438513 80437465 ID=MsG0480023073.01.T01:exon:11206;Parent=MsG0480023073.01.T01
Chr4 exon 80439261 80439345 80439261 ID=MsG0480023073.01.T01:exon:11207;Parent=MsG0480023073.01.T01
Chr4 exon 80439600 80439711 80439600 ID=MsG0480023073.01.T01:exon:11208;Parent=MsG0480023073.01.T01
Chr4 exon 80439852 80440048 80439852 ID=MsG0480023073.01.T01:exon:11209;Parent=MsG0480023073.01.T01
Chr4 five_prime_UTR 80437465 80437758 80437465 ID=MsG0480023073.01.T01:five_prime_utr;Parent=MsG0480023073.01.T01
Chr4 CDS 80437759 80438513 80437759 ID=MsG0480023073.01.T01:cds;Parent=MsG0480023073.01.T01
Chr4 CDS 80439261 80439345 80439261 ID=MsG0480023073.01.T01:cds;Parent=MsG0480023073.01.T01
Chr4 CDS 80439600 80439711 80439600 ID=MsG0480023073.01.T01:cds;Parent=MsG0480023073.01.T01
Chr4 CDS 80439852 80439955 80439852 ID=MsG0480023073.01.T01:cds;Parent=MsG0480023073.01.T01
Chr4 three_prime_UTR 80439956 80440048 80439956 ID=MsG0480023073.01.T01:three_prime_utr;Parent=MsG0480023073.01.T01
Gene Sequence

>MsG0480023073.01.T01

ATGGTGATTCTCCAAACAGCTCTTATGCCTCCAACGTTCTCACCTTTTTCTCATTCGAGATTCTTATCTTATTCCACTTTATCTACTCATCACATTGTAAAGCCTATTTCAATATCATGTTCTGTTTCAACTAACTCTAGTTCAAAACCCGAACCCGAACCTAATCCTACATCCAAACAAAAACTGAAAAATAAGGGGAAAAGTTTCCAACGTGGAGATGGTGTGACCATTAATAAGGATGATAGAAACTCTGAGGATGAATTTCCAACAACAATTCCAAGGAAGCCAAGGCGCGGTCGTAAAAGTGAGGCTATGAAAGTTGAAGATTTTGTACGCGACAGACTGGAGAACACGTTTGCTGCAATTCGGCAACAAAATGCGGGTGCTTTGGAGAATCATAAAGATATAATGAAGGACAGTGTCGGTGATGATTCTGAATCAAAACCAAAACGCAGCAATGATGATAGTGATGAGGAGGAGGTGGAAGAAGAGGAAGATGGTGGTGGAGAGAAGGCGGTGATTGAGGAAGAGAGTGAGAGCTGGCCATTGGATACGGATGTCGGGTGGGGAATAAGAGCTTCTGAGTATTTTGAGAAGCATCCGATTAAGAATGTAGTAGGAGATGATGGTGCTGAAATTGATTGGGAAGGGGAGACTGAGGATAACTGGGTGCAGGAGATCAATTGTTTGGAGTGGGAGAGTTTTGCTTTCCATCCTAGCCCTTTAATCGTACTTGTTTTTGAACGCTATAACAGGGCAAATGATAACTGGAAAAATTTGAAAGAGCTGGAGAAAGCAATAAAGGTGTACTGGAGTGCTAAAGATCGGTTACCTCCCAGGGCGATTAAGATTGACATTAACATCGAGAAAGACTTGGCTTATGCCCTGAAAGTTCGAGAATGTCCTCAAATTTTGTTTCTACGAGGGAATAAGATGGTGTACAGGGAGAAAGAACTCAGAACTGCGGATGAGCTGGTTCAGATGATTGCATTTTTTTATTACAATGCAAAGAAGCCTGCATGGATTGATGATAAGGCCTTGTATTTACGTTATTAA

Protein sequence

>MsG0480023073.01.T01

MVILQTALMPPTFSPFSHSRFLSYSTLSTHHIVKPISISCSVSTNSSSKPEPEPNPTSKQKLKNKGKSFQRGDGVTINKDDRNSEDEFPTTIPRKPRRGRKSEAMKVEDFVRDRLENTFAAIRQQNAGALENHKDIMKDSVGDDSESKPKRSNDDSDEEEVEEEEDGGGEKAVIEEESESWPLDTDVGWGIRASEYFEKHPIKNVVGDDGAEIDWEGETEDNWVQEINCLEWESFAFHPSPLIVLVFERYNRANDNWKNLKELEKAIKVYWSAKDRLPPRAIKIDINIEKDLAYALKVRECPQILFLRGNKMVYREKELRTADELVQMIAFFYYNAKKPAWIDDKALYLRY*