AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025135.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025135.01.T01 MTR_5g022740 36.513 304 68 5 1 179 158 461 1.14e-42 152
MsG0580025135.01.T01 MTR_5g022740 64.356 101 32 2 100 197 487 586 1.21e-31 121
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025135.01.T01 AT3G51320 26.923 234 67 4 1 130 139 372 1.42e-17 80.5

Find 56 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGTTGCCTTGTGCTGATTC+TGG 0.201078 5:-14231171 MsG0580025135.01.T01:CDS
GAGGATGAGTAGTAGGAATT+TGG 0.260487 5:-14231892 MsG0580025135.01.T01:intron
GATGAACTATCTCATAGATT+TGG 0.269212 5:-14231192 MsG0580025135.01.T01:CDS
GGTTCATATGTGGTTCTTGC+GGG 0.288088 5:-14232337 MsG0580025135.01.T01:CDS
CAAGTCCACAAGATTGCTTC+CGG 0.318205 5:+14231287 None:intergenic
GTTGAAGTTGTTTAGAGAAA+TGG 0.322258 5:-14232116 MsG0580025135.01.T01:CDS
CCAATGAATGTTATTTCATC+AGG 0.334871 5:+14231721 None:intergenic
ATGAACTATCTCATAGATTT+GGG 0.373215 5:-14231191 MsG0580025135.01.T01:CDS
TTGCGGGGAGGGGAGGTGCT+AGG 0.376659 5:-14232321 MsG0580025135.01.T01:CDS
TAGAGGGAATGATAGGACTA+TGG 0.401460 5:-14232080 MsG0580025135.01.T01:intron
GCATTCTTTGTGCGTGTGCT+CGG 0.409225 5:-14231699 MsG0580025135.01.T01:CDS
TTGAAGTTGTTTAGAGAAAT+GGG 0.421788 5:-14232115 MsG0580025135.01.T01:CDS
ATGGGTCGCCTGAGAATTAG+AGG 0.422329 5:-14232097 MsG0580025135.01.T01:CDS
AAGTCCACAAGATTGCTTCC+GGG 0.423003 5:+14231288 None:intergenic
TGATGAAAGTCCGTGCAGAT+AGG 0.430206 5:-14231762 MsG0580025135.01.T01:CDS
ATATGTGGTTCTTGCGGGGA+GGG 0.443906 5:-14232332 MsG0580025135.01.T01:CDS
CATTCTTTGTGCGTGTGCTC+GGG 0.453720 5:-14231698 MsG0580025135.01.T01:CDS
CCTGATGAAATAACATTCAT+TGG 0.455391 5:-14231721 MsG0580025135.01.T01:CDS
ACTGATGAAGGAAAGAAGTT+AGG 0.456944 5:-14231318 MsG0580025135.01.T01:CDS
TATCATTCCCTCTAATTCTC+AGG 0.464640 5:+14232089 None:intergenic
TATGTGGTTCTTGCGGGGAG+GGG 0.465077 5:-14232331 MsG0580025135.01.T01:CDS
TGAGAATTAGAGGGAATGAT+AGG 0.471882 5:-14232087 MsG0580025135.01.T01:CDS
GTTATCTTTATCTATCATCC+TGG 0.477600 5:+14231115 None:intergenic
TGCGGGGAGGGGAGGTGCTA+GGG 0.484087 5:-14232320 MsG0580025135.01.T01:intron
ATTTCAAAGTGTCAAACAAT+CGG 0.513261 5:-14231248 MsG0580025135.01.T01:CDS
GTGGTTCTTGCGGGGAGGGG+AGG 0.514142 5:-14232328 MsG0580025135.01.T01:CDS
CATATGTGGTTCTTGCGGGG+AGG 0.517010 5:-14232333 MsG0580025135.01.T01:CDS
TAGATATGTATTGTAAATGC+GGG 0.519431 5:-14231945 MsG0580025135.01.T01:CDS
TGAAGCTGTAAACATAATGA+TGG 0.523625 5:-14231214 MsG0580025135.01.T01:CDS
AGTCCGTGCAGATAGGGTAT+TGG 0.524285 5:-14231755 MsG0580025135.01.T01:CDS
TGCTGATTCTGGACAATCAT+CGG 0.526031 5:-14231160 MsG0580025135.01.T01:CDS
AGAATTCGTTGGTTCATATG+TGG 0.532352 5:-14232347 MsG0580025135.01.T01:CDS
GTGTCAAACAATCGGCGCGA+AGG 0.539425 5:-14231240 MsG0580025135.01.T01:CDS
TCTTTGTGCGTGTGCTCGGG+CGG 0.547762 5:-14231695 MsG0580025135.01.T01:CDS
ATAGATATGTATTGTAAATG+CGG 0.551089 5:-14231946 MsG0580025135.01.T01:intron
TGGTTCATATGTGGTTCTTG+CGG 0.554527 5:-14232338 MsG0580025135.01.T01:CDS
TTTGCCGGTGGAGAATTCGT+TGG 0.559500 5:-14232358 MsG0580025135.01.T01:CDS
AACAACTTCAACGCATAACC+AGG 0.566178 5:+14232127 None:intergenic
CGGAACTGTTGAGTGAAGGC+AGG 0.566393 5:-14231675 MsG0580025135.01.T01:intron
GATGAAAGTCCGTGCAGATA+GGG 0.570973 5:-14231761 MsG0580025135.01.T01:CDS
TGTAAATGCGGGAGAAGTTG+AGG 0.590657 5:-14231934 MsG0580025135.01.T01:CDS
CGGGCGGAACTGTTGAGTGA+AGG 0.593889 5:-14231679 MsG0580025135.01.T01:CDS
GTTCATATGTGGTTCTTGCG+GGG 0.598445 5:-14232336 MsG0580025135.01.T01:CDS
CAATGAATGTTATTTCATCA+GGG 0.599325 5:+14231722 None:intergenic
TGATAAGGTAGAATGTGTCA+TGG 0.610065 5:-14232411 None:intergenic
GATAAGGTAGAATGTGTCAT+GGG 0.624659 5:-14232410 None:intergenic
AATACCCGGAAGCAATCTTG+TGG 0.628479 5:-14231292 MsG0580025135.01.T01:CDS
TGAACCAACGAATTCTCCAC+CGG 0.640679 5:+14232354 None:intergenic
TCACCAATACCCTATCTGCA+CGG 0.666461 5:+14231752 None:intergenic
AAGAAGTTAGGCATAATACC+CGG 0.674773 5:-14231306 MsG0580025135.01.T01:CDS
GAGTGTGAAAGGTGAAGTTG+AGG 0.687237 5:-14231786 MsG0580025135.01.T01:intron
TGGGTCGCCTGAGAATTAGA+GGG 0.694891 5:-14232096 MsG0580025135.01.T01:CDS
GATTGTCCAGAATCAGCACA+AGG 0.701391 5:+14231165 None:intergenic
AAATGCGGGAGAAGTTGAGG+CGG 0.717384 5:-14231931 MsG0580025135.01.T01:CDS
TGATTCTGGACAATCATCGG+TGG 0.718267 5:-14231157 MsG0580025135.01.T01:CDS
GTGCAGATAGGGTATTGGTG+AGG 0.733167 5:-14231750 MsG0580025135.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGATATGTATTGTAAATG+CGG - Chr5:14231575-14231594 MsG0580025135.01.T01:intron 20.0%
! AAGAACATGACAAAATTTGA+TGG - Chr5:14231985-14232004 MsG0580025135.01.T01:intron 25.0%
! AATTGGAATTGTTTGATTAG+TGG - Chr5:14231352-14231371 MsG0580025135.01.T01:intron 25.0%
! AGAACATGACAAAATTTGAT+GGG - Chr5:14231986-14232005 MsG0580025135.01.T01:intron 25.0%
! ATGAACTATCTCATAGATTT+GGG - Chr5:14232330-14232349 MsG0580025135.01.T01:CDS 25.0%
! ATTGGAATTGTTTGATTAGT+GGG - Chr5:14231353-14231372 MsG0580025135.01.T01:intron 25.0%
! TAGACTTAAAGAAGGAAAAT+CGG - Chr5:14231496-14231515 MsG0580025135.01.T01:intron 25.0%
! TAGATATGTATTGTAAATGC+GGG - Chr5:14231576-14231595 MsG0580025135.01.T01:intron 25.0%
! TTGAAGTTGTTTAGAGAAAT+GGG - Chr5:14231406-14231425 MsG0580025135.01.T01:intron 25.0%
!! ATTTCAAAGTGTCAAACAAT+CGG - Chr5:14232273-14232292 MsG0580025135.01.T01:intron 25.0%
!! CTTGTTTGATTTAATGTGTT+GGG - Chr5:14231708-14231727 MsG0580025135.01.T01:CDS 25.0%
!!! CAATGAATGTTATTTCATCA+GGG + Chr5:14231802-14231821 None:intergenic 25.0%
AAATGATAAGCAGAAGAAAC+TGG + Chr5:14232140-14232159 None:intergenic 30.0%
ATGTAATGCCTGAAAAGAAT+TGG - Chr5:14231327-14231346 MsG0580025135.01.T01:CDS 30.0%
CCTGAAAAGAATTGGTTAAT+TGG - Chr5:14231335-14231354 MsG0580025135.01.T01:intron 30.0%
CCTGATGAAATAACATTCAT+TGG - Chr5:14231800-14231819 MsG0580025135.01.T01:intron 30.0%
GATGAACTATCTCATAGATT+TGG - Chr5:14232329-14232348 MsG0580025135.01.T01:CDS 30.0%
GTTGAAGTTGTTTAGAGAAA+TGG - Chr5:14231405-14231424 MsG0580025135.01.T01:intron 30.0%
TGAAGCTGTAAACATAATGA+TGG - Chr5:14232307-14232326 MsG0580025135.01.T01:intron 30.0%
! AAGCAAATGATGATGTGTTT+GGG - Chr5:14231878-14231897 MsG0580025135.01.T01:intron 30.0%
! AGTATGATTAGGTGTTTTAC+GGG - Chr5:14231525-14231544 MsG0580025135.01.T01:intron 30.0%
! ATTGATGGGTATGTTAAAGT+TGG - Chr5:14231275-14231294 MsG0580025135.01.T01:CDS 30.0%
! CAAATTTTGTCATGTTCTTC+AGG + Chr5:14231984-14232003 None:intergenic 30.0%
! CCAATTAACCAATTCTTTTC+AGG + Chr5:14231338-14231357 None:intergenic 30.0%
! GAGTATGATTAGGTGTTTTA+CGG - Chr5:14231524-14231543 MsG0580025135.01.T01:intron 30.0%
! GCTTGTTTGATTTAATGTGT+TGG - Chr5:14231707-14231726 MsG0580025135.01.T01:CDS 30.0%
! TAAGCAAATGATGATGTGTT+TGG - Chr5:14231877-14231896 MsG0580025135.01.T01:intron 30.0%
!! CCAATGAATGTTATTTCATC+AGG + Chr5:14231803-14231822 None:intergenic 30.0%
!!! TTGATTAGTGGGTTTTTGAA+GGG - Chr5:14231364-14231383 MsG0580025135.01.T01:intron 30.0%
!!! TTTGATTAGTGGGTTTTTGA+AGG - Chr5:14231363-14231382 MsG0580025135.01.T01:intron 30.0%
AAGAAGTTAGGCATAATACC+CGG - Chr5:14232215-14232234 MsG0580025135.01.T01:intron 35.0%
ACTGATGAAGGAAAGAAGTT+AGG - Chr5:14232203-14232222 MsG0580025135.01.T01:intron 35.0%
ATCCATGTCAACAAGAAGTT+TGG + Chr5:14232097-14232116 None:intergenic 35.0%
CAAATCTTCTTGCAAATGTG+GGG - Chr5:14231935-14231954 MsG0580025135.01.T01:CDS 35.0%
CACCAAAAATGAGCGAAATT+CGG + Chr5:14231910-14231929 None:intergenic 35.0%
GCAAATCTTCTTGCAAATGT+GGG - Chr5:14231934-14231953 MsG0580025135.01.T01:CDS 35.0%
TAAAGAAGGAAAATCGGCAT+GGG - Chr5:14231502-14231521 MsG0580025135.01.T01:intron 35.0%
TATCATTCCCTCTAATTCTC+AGG + Chr5:14231435-14231454 None:intergenic 35.0%
TCAAGAGAGATGTGTACTTA+GGG - Chr5:14232061-14232080 MsG0580025135.01.T01:intron 35.0%
TCTGCTTATCATTTATGCAG+TGG - Chr5:14232146-14232165 MsG0580025135.01.T01:CDS 35.0%
TGAGAATTAGAGGGAATGAT+AGG - Chr5:14231434-14231453 MsG0580025135.01.T01:intron 35.0%
TTAAAGAAGGAAAATCGGCA+TGG - Chr5:14231501-14231520 MsG0580025135.01.T01:intron 35.0%
TTCAAGAGAGATGTGTACTT+AGG - Chr5:14232060-14232079 MsG0580025135.01.T01:intron 35.0%
! ATTTGATGGGTATATCTCAC+AGG - Chr5:14231999-14232018 MsG0580025135.01.T01:intron 35.0%
!! AGAATTCGTTGGTTCATATG+TGG - Chr5:14231174-14231193 MsG0580025135.01.T01:CDS 35.0%
!! TTTTTGAGAGGATGAGTAGT+AGG - Chr5:14231622-14231641 MsG0580025135.01.T01:intron 35.0%
AACAACTTCAACGCATAACC+AGG + Chr5:14231397-14231416 None:intergenic 40.0%
AAGCAGAAGAAACTGGTAAC+AGG + Chr5:14232133-14232152 None:intergenic 40.0%
ATGGGCAAGCTGTGAAAAAT+GGG - Chr5:14231129-14231148 MsG0580025135.01.T01:CDS 40.0%
CAAGAGAGATGTGTACTTAG+GGG - Chr5:14232062-14232081 MsG0580025135.01.T01:intron 40.0%
CTCACAGGAGTCATTGTTAT+GGG - Chr5:14232014-14232033 MsG0580025135.01.T01:intron 40.0%
GAGGATGAGTAGTAGGAATT+TGG - Chr5:14231629-14231648 MsG0580025135.01.T01:intron 40.0%
GGCAAATCTTCTTGCAAATG+TGG - Chr5:14231933-14231952 MsG0580025135.01.T01:CDS 40.0%
GTGGGAACTCAATGATTGAT+GGG - Chr5:14231261-14231280 MsG0580025135.01.T01:CDS 40.0%
TAGAGGGAATGATAGGACTA+TGG - Chr5:14231441-14231460 MsG0580025135.01.T01:intron 40.0%
TAGGGTGATGTTTGATGGAA+TGG - Chr5:14231219-14231238 MsG0580025135.01.T01:CDS 40.0%
TCTCACAGGAGTCATTGTTA+TGG - Chr5:14232013-14232032 MsG0580025135.01.T01:intron 40.0%
TGCCAAACTTCTTGTTGACA+TGG - Chr5:14232092-14232111 MsG0580025135.01.T01:CDS 40.0%
TGGTTCATATGTGGTTCTTG+CGG - Chr5:14231183-14231202 MsG0580025135.01.T01:CDS 40.0%
TGTTTGATGGAATGGTGAGT+CGG - Chr5:14231227-14231246 MsG0580025135.01.T01:CDS 40.0%
! AGCCGAATTTCGCTCATTTT+TGG - Chr5:14231905-14231924 MsG0580025135.01.T01:CDS 40.0%
! AGGAGTGCAAAAACTGATGA+AGG - Chr5:14232191-14232210 MsG0580025135.01.T01:intron 40.0%
! ATAGGACTATGGTTTGTGTG+TGG - Chr5:14231452-14231471 MsG0580025135.01.T01:intron 40.0%
! CTATGGTTTGTGTGTGGTTA+CGG - Chr5:14231458-14231477 MsG0580025135.01.T01:intron 40.0%
! GTAGTAGGAATTTGGTTTCG+TGG - Chr5:14231637-14231656 MsG0580025135.01.T01:intron 40.0%
! TTGTTATGGGCAAGTTTGCT+CGG - Chr5:14232027-14232046 MsG0580025135.01.T01:intron 40.0%
!! CGGCTAGTAAAGTTTTTGAG+AGG - Chr5:14231610-14231629 MsG0580025135.01.T01:intron 40.0%
!! GATTTTGGGCATTGCATCAT+GGG - Chr5:14231668-14231687 MsG0580025135.01.T01:intron 40.0%
!! TGATTTTGGGCATTGCATCA+TGG - Chr5:14231667-14231686 MsG0580025135.01.T01:intron 40.0%
!! TGCTGATTCTGGACAATCAT+CGG - Chr5:14232361-14232380 MsG0580025135.01.T01:CDS 40.0%
!! TTTTTGAAGGGTAGGAATCC+TGG - Chr5:14231376-14231395 MsG0580025135.01.T01:intron 40.0%
!!! TCGTGGAATGCACTGATTTT+GGG - Chr5:14231654-14231673 MsG0580025135.01.T01:intron 40.0%
!!! TGGGGTTGATTTTGTTTTGC+CGG - Chr5:14231148-14231167 MsG0580025135.01.T01:CDS 40.0%
!!! TTAGTGGGTTTTTGAAGGGT+AGG - Chr5:14231368-14231387 MsG0580025135.01.T01:intron 40.0%
!!! TTCGTGGAATGCACTGATTT+TGG - Chr5:14231653-14231672 MsG0580025135.01.T01:intron 40.0%
!!! TTTCGCTCATTTTTGGTGCA+TGG - Chr5:14231912-14231931 MsG0580025135.01.T01:CDS 40.0%
AAATGTGGGGCTTATTGACG+AGG - Chr5:14231948-14231967 MsG0580025135.01.T01:intron 45.0%
AAGTCCACAAGATTGCTTCC+GGG + Chr5:14232236-14232255 None:intergenic 45.0%
AATACCCGGAAGCAATCTTG+TGG - Chr5:14232229-14232248 MsG0580025135.01.T01:intron 45.0%
ACGTCGGGTAGACTTAAAGA+AGG - Chr5:14231488-14231507 MsG0580025135.01.T01:intron 45.0%
CAAGTCCACAAGATTGCTTC+CGG + Chr5:14232237-14232256 None:intergenic 45.0%
CATGGGCAAGCTGTGAAAAA+TGG - Chr5:14231128-14231147 MsG0580025135.01.T01:CDS 45.0%
CCAGAGAGATTGCAAAAACC+AGG - Chr5:14232388-14232407 MsG0580025135.01.T01:CDS 45.0%
CGTGGGAACTCAATGATTGA+TGG - Chr5:14231260-14231279 MsG0580025135.01.T01:CDS 45.0%
GAAGAAACTGGTAACAGGCT+AGG + Chr5:14232128-14232147 None:intergenic 45.0%
GAGTGTGAAAGGTGAAGTTG+AGG - Chr5:14231735-14231754 MsG0580025135.01.T01:CDS 45.0%
GATGAAAGTCCGTGCAGATA+GGG - Chr5:14231760-14231779 MsG0580025135.01.T01:CDS 45.0%
GATTGTCCAGAATCAGCACA+AGG + Chr5:14232359-14232378 None:intergenic 45.0%
GCTCAATGGGAGAATGTTTC+AGG - Chr5:14232171-14232190 MsG0580025135.01.T01:intron 45.0%
GGTTCATATGTGGTTCTTGC+GGG - Chr5:14231184-14231203 MsG0580025135.01.T01:CDS 45.0%
GTTCATATGTGGTTCTTGCG+GGG - Chr5:14231185-14231204 MsG0580025135.01.T01:CDS 45.0%
GTTTGATGGAATGGTGAGTC+GGG - Chr5:14231228-14231247 MsG0580025135.01.T01:CDS 45.0%
TCACCAATACCCTATCTGCA+CGG + Chr5:14231772-14231791 None:intergenic 45.0%
TGAACCAACGAATTCTCCAC+CGG + Chr5:14231170-14231189 None:intergenic 45.0%
TGATGAAAGTCCGTGCAGAT+AGG - Chr5:14231759-14231778 MsG0580025135.01.T01:CDS 45.0%
TGATTCTGGACAATCATCGG+TGG - Chr5:14232364-14232383 MsG0580025135.01.T01:CDS 45.0%
TGGGCAAGCTGTGAAAAATG+GGG - Chr5:14231130-14231149 MsG0580025135.01.T01:CDS 45.0%
TGGTAACAGGCTAGGTTCTT+AGG + Chr5:14232120-14232139 None:intergenic 45.0%
TGTAAATGCGGGAGAAGTTG+AGG - Chr5:14231587-14231606 MsG0580025135.01.T01:intron 45.0%
TTATGCAGTGGCTGCTCAAT+GGG - Chr5:14232158-14232177 MsG0580025135.01.T01:intron 45.0%
TTTATGCAGTGGCTGCTCAA+TGG - Chr5:14232157-14232176 MsG0580025135.01.T01:intron 45.0%
! ATCGGCATGGGAGTATGATT+AGG - Chr5:14231514-14231533 MsG0580025135.01.T01:intron 45.0%
! TGTTGGGATGAGAGTGTGAA+AGG - Chr5:14231724-14231743 MsG0580025135.01.T01:CDS 45.0%
!! CCTGGTTTTTGCAATCTCTC+TGG + Chr5:14232391-14232410 None:intergenic 45.0%
!!! GGTTGATTTTGTTTTGCCGG+TGG - Chr5:14231151-14231170 MsG0580025135.01.T01:CDS 45.0%
AAATGCGGGAGAAGTTGAGG+CGG - Chr5:14231590-14231609 MsG0580025135.01.T01:intron 50.0%
AGTCCGTGCAGATAGGGTAT+TGG - Chr5:14231766-14231785 MsG0580025135.01.T01:CDS 50.0%
ATATGTGGTTCTTGCGGGGA+GGG - Chr5:14231189-14231208 MsG0580025135.01.T01:CDS 50.0%
ATCATGGGAATCCTGAGTGG+CGG - Chr5:14231683-14231702 MsG0580025135.01.T01:CDS 50.0%
ATGGGTCGCCTGAGAATTAG+AGG - Chr5:14231424-14231443 MsG0580025135.01.T01:intron 50.0%
CATTCTTTGTGCGTGTGCTC+GGG - Chr5:14231823-14231842 MsG0580025135.01.T01:intron 50.0%
GCATTCTTTGTGCGTGTGCT+CGG - Chr5:14231822-14231841 MsG0580025135.01.T01:intron 50.0%
GGTGCTAGGGTGATGTTTGA+TGG - Chr5:14231214-14231233 MsG0580025135.01.T01:CDS 50.0%
TGCATCATGGGAATCCTGAG+TGG - Chr5:14231680-14231699 MsG0580025135.01.T01:CDS 50.0%
TGGAATGGTGAGTCGGGATT+TGG - Chr5:14231234-14231253 MsG0580025135.01.T01:CDS 50.0%
TGGGTCGCCTGAGAATTAGA+GGG - Chr5:14231425-14231444 MsG0580025135.01.T01:intron 50.0%
TTGTGTGTGGTTACGGCTTG+TGG - Chr5:14231465-14231484 MsG0580025135.01.T01:intron 50.0%
TTTGCCGGTGGAGAATTCGT+TGG - Chr5:14231163-14231182 MsG0580025135.01.T01:CDS 50.0%
! GAGTCGGGATTTGGTTTCGT+GGG - Chr5:14231243-14231262 MsG0580025135.01.T01:CDS 50.0%
! TGAGTCGGGATTTGGTTTCG+TGG - Chr5:14231242-14231261 MsG0580025135.01.T01:CDS 50.0%
!! GTGCAGATAGGGTATTGGTG+AGG - Chr5:14231771-14231790 MsG0580025135.01.T01:CDS 50.0%
CATATGTGGTTCTTGCGGGG+AGG - Chr5:14231188-14231207 MsG0580025135.01.T01:CDS 55.0%
CGGAACTGTTGAGTGAAGGC+AGG - Chr5:14231846-14231865 MsG0580025135.01.T01:intron 55.0%
GTGTCAAACAATCGGCGCGA+AGG - Chr5:14232281-14232300 MsG0580025135.01.T01:intron 55.0%
TATGTGGTTCTTGCGGGGAG+GGG - Chr5:14231190-14231209 MsG0580025135.01.T01:CDS 55.0%
TCAAACAAGCTCCGCCACTC+AGG + Chr5:14231697-14231716 None:intergenic 55.0%
TGGTTACGGCTTGTGGACGT+CGG - Chr5:14231472-14231491 MsG0580025135.01.T01:intron 55.0%
! GTGACTTGAGTGCTGCACAC+AGG - Chr5:14231297-14231316 MsG0580025135.01.T01:CDS 55.0%
!! GGGTTGCCTTGTGCTGATTC+TGG - Chr5:14232350-14232369 MsG0580025135.01.T01:CDS 55.0%
CGGGCGGAACTGTTGAGTGA+AGG - Chr5:14231842-14231861 MsG0580025135.01.T01:intron 60.0%
GGTTACGGCTTGTGGACGTC+GGG - Chr5:14231473-14231492 MsG0580025135.01.T01:intron 60.0%
TCTTTGTGCGTGTGCTCGGG+CGG - Chr5:14231826-14231845 MsG0580025135.01.T01:intron 60.0%
GTGGTTCTTGCGGGGAGGGG+AGG - Chr5:14231193-14231212 MsG0580025135.01.T01:CDS 70.0%
!! TGCGGGGAGGGGAGGTGCTA+GGG - Chr5:14231201-14231220 MsG0580025135.01.T01:CDS 70.0%
!! TTGCGGGGAGGGGAGGTGCT+AGG - Chr5:14231200-14231219 MsG0580025135.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 14231122 14232421 14231122 ID=MsG0580025135.01;Name=MsG0580025135.01
Chr5 mRNA 14231122 14232421 14231122 ID=MsG0580025135.01.T01;Parent=MsG0580025135.01;Name=MsG0580025135.01.T01;_AED=0.41;_eAED=0.44;_QI=0|0|0|1|1|1|5|0|204
Chr5 exon 14232321 14232421 14232321 ID=MsG0580025135.01.T01:exon:20624;Parent=MsG0580025135.01.T01
Chr5 exon 14232081 14232171 14232081 ID=MsG0580025135.01.T01:exon:20623;Parent=MsG0580025135.01.T01
Chr5 exon 14231893 14231964 14231893 ID=MsG0580025135.01.T01:exon:20622;Parent=MsG0580025135.01.T01
Chr5 exon 14231676 14231797 14231676 ID=MsG0580025135.01.T01:exon:20621;Parent=MsG0580025135.01.T01
Chr5 exon 14231122 14231350 14231122 ID=MsG0580025135.01.T01:exon:20620;Parent=MsG0580025135.01.T01
Chr5 CDS 14232321 14232421 14232321 ID=MsG0580025135.01.T01:cds;Parent=MsG0580025135.01.T01
Chr5 CDS 14232081 14232171 14232081 ID=MsG0580025135.01.T01:cds;Parent=MsG0580025135.01.T01
Chr5 CDS 14231893 14231964 14231893 ID=MsG0580025135.01.T01:cds;Parent=MsG0580025135.01.T01
Chr5 CDS 14231676 14231797 14231676 ID=MsG0580025135.01.T01:cds;Parent=MsG0580025135.01.T01
Chr5 CDS 14231122 14231350 14231122 ID=MsG0580025135.01.T01:cds;Parent=MsG0580025135.01.T01
Gene Sequence

>MsG0580025135.01.T01

ATGTGTCATGGGCAAGCTGTGAAAAATGGGGTTGATTTTGTTTTGCCGGTGGAGAATTCGTTGGTTCATATGTGGTTCTTGCGGGGAGGGGAGGTGCTAGGTGGGTTTTTGAAGGGTAGGAATCCTGGTTATGCGTTGAAGTTGTTTAGAGAAATGGGTCGCCTGAGAATTAGAGGGAATGATAGGACTATGATATGTATTGTAAATGCGGGAGAAGTTGAGGCGGCTAGTAAAGTTTTTGAGAGGATGAGTAGTAGGAATTTGGTGAAGTTGAGGTTGATGAAAGTCCGTGCAGATAGGGTATTGGTGAGGTTACTCCCTGATGAAATAACATTCATTGGCATTCTTTGTGCGTGTGCTCGGGCGGAACTGTTGAGTGAAGGCAGGAGTGCAAAAACTGATGAAGGAAAGAAGTTAGGCATAATACCCGGAAGCAATCTTGTGGACTTGAAAAATATTGTTCACAATTTCAAAGTGTCAAACAATCGGCGCGAAGGAATTGAAGCTGTAAACATAATGATGGATGAACTATCTCATAGATTTGGGTTGCCTTGTGCTGATTCTGGACAATCATCGGTGGACCAGAGAGATTGCAAAAACCAGGATGATAGATAA

Protein sequence

>MsG0580025135.01.T01

MCHGQAVKNGVDFVLPVENSLVHMWFLRGGEVLGGFLKGRNPGYALKLFREMGRLRIRGNDRTMICIVNAGEVEAASKVFERMSSRNLVKLRLMKVRADRVLVRLLPDEITFIGILCACARAELLSEGRSAKTDEGKKLGIIPGSNLVDLKNIVHNFKVSNNRREGIEAVNIMMDELSHRFGLPCADSGQSSVDQRDCKNQDDR*