AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017461.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017461.01.T01 MTR_3g108530 66.667 270 71 6 1 265 1 256 2.11e-106 310
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017461.01.T01 AT4G32560 35.391 243 144 5 9 248 16 248 1.39e-28 110
MsG0380017461.01.T01 AT4G32560 35.443 237 140 5 15 248 45 271 2.47e-28 110
MsG0380017461.01.T01 AT4G32560 35.391 243 144 5 9 248 41 273 2.93e-28 110
MsG0380017461.01.T01 AT4G32560 35.391 243 144 5 9 248 41 273 2.93e-28 110

Find 64 sgRNAs with CRISPR-Local

Find 455 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTACCTACAATGCTCTTT+TGG 0.238498 3:+96542456 MsG0380017461.01.T01:CDS
AAGAGTTGATTTGATGAAAA+AGG 0.251538 3:+96541428 MsG0380017461.01.T01:CDS
AACTTCGATGAGTGGCAATT+TGG 0.253638 3:+96541039 MsG0380017461.01.T01:exon
TTGGAATAATCTCCATTTAC+AGG 0.293628 3:-96547471 None:intergenic
TTCCAATCGGCCAAAGGATT+GGG 0.306996 3:+96547488 MsG0380017461.01.T01:three_prime_UTR
CAAATATTCTAGACACTTGT+AGG 0.313069 3:-96541735 None:intergenic
AGTATGAATTTATAATAATA+AGG 0.333722 3:-96547559 None:intergenic
TATTTCCAAAAGAGCATTGT+AGG 0.361022 3:-96542461 None:intergenic
AGCTCACAATACCATGGTTA+TGG 0.369500 3:+96547301 MsG0380017461.01.T01:three_prime_UTR
GACAAATCTTAATGATCTTA+AGG 0.372253 3:+96546116 MsG0380017461.01.T01:CDS
ATTAAGAGAGAGAATCAATA+AGG 0.380556 3:+96541120 MsG0380017461.01.T01:CDS
GATAAAAGTAATTGATAATA+CGG 0.393838 3:-96541708 None:intergenic
ATTGGAGTGCCCCAATCCTT+TGG 0.408856 3:-96547498 None:intergenic
ATTCCAATCGGCCAAAGGAT+TGG 0.422827 3:+96547487 MsG0380017461.01.T01:three_prime_UTR
GCTCCACAACATTCATCTTC+CGG 0.435244 3:-96541087 None:intergenic
AATTTATAATAATAAGGATA+AGG 0.437533 3:-96547553 None:intergenic
GCCCCAATCCTTTGGCCGAT+TGG 0.442457 3:-96547490 None:intergenic
TCCCTTGACAATTCCTTCCA+TGG 0.449854 3:-96544065 None:intergenic
GCTCACAATACCATGGTTAT+GGG 0.451293 3:+96547302 MsG0380017461.01.T01:three_prime_UTR
AATTGTCAAGGGAAGTGAAC+AGG 0.458713 3:+96544075 MsG0380017461.01.T01:CDS
AGGAACTTGCTGCTAGACTA+AGG 0.460208 3:+96541554 MsG0380017461.01.T01:intron
TATAAAGCTTGTTCATTCCA+TGG 0.467664 3:+96544048 MsG0380017461.01.T01:CDS
GAGTGGCAATTTGGATGAAC+TGG 0.470793 3:+96541048 MsG0380017461.01.T01:CDS
TTGACACCGTAACTTCTCCT+TGG 0.470807 3:-96547193 None:intergenic
CAATTCAATCAAGTCTTTGA+AGG 0.479320 3:+96541174 MsG0380017461.01.T01:CDS
ATTGAATTCGATCATTTCAC+AGG 0.492974 3:+96542512 MsG0380017461.01.T01:CDS
TGGTTTGTGAGATTGATTGC+CGG 0.503885 3:+96541068 MsG0380017461.01.T01:CDS
AGAGAGAGAATCAATAAGGA+AGG 0.516554 3:+96541124 MsG0380017461.01.T01:CDS
CAGTCAAAGCGGATCGATGA+TGG 0.517423 3:+96547273 MsG0380017461.01.T01:CDS
TTCACGTTGCGTTGGATATG+TGG 0.519968 3:+96541760 MsG0380017461.01.T01:CDS
AAATAAAAGAATTGATGTAA+AGG 0.524948 3:+96542479 MsG0380017461.01.T01:CDS
TACCTTATTGCAGTTTCAAG+AGG 0.525372 3:+96544003 MsG0380017461.01.T01:intron
AGTTCAGGATCTTGAAAGGA+AGG 0.526031 3:+96541269 MsG0380017461.01.T01:intron
CATTCTCTTAGCGAATCACT+TGG 0.532694 3:+96541405 MsG0380017461.01.T01:CDS
TATTTGTATTCACGTTGCGT+TGG 0.538142 3:+96541752 MsG0380017461.01.T01:CDS
AAGCTTGTTCATTCCATGGA+AGG 0.540003 3:+96544052 MsG0380017461.01.T01:CDS
AAACTACGAAAGGTTCAACT+AGG 0.544419 3:+96546078 MsG0380017461.01.T01:CDS
TAAATGGAGATTATTCCAAT+CGG 0.553466 3:+96547475 MsG0380017461.01.T01:three_prime_UTR
TGGTAAGACTATATGAGATA+AGG 0.555298 3:+96541780 MsG0380017461.01.T01:CDS
CTTGTGTTGATTTCGAGCGT+AGG 0.561243 3:-96540929 None:intergenic
TTCCATGGAAGGAATTGTCA+AGG 0.564214 3:+96544063 MsG0380017461.01.T01:CDS
TCCAATCGGCCAAAGGATTG+GGG 0.567106 3:+96547489 MsG0380017461.01.T01:three_prime_UTR
ATAAAAGTAATTGATAATAC+GGG 0.572034 3:-96541707 None:intergenic
TCTTAGTTCAGGATCTTGAA+AGG 0.575221 3:+96541265 MsG0380017461.01.T01:intron
ACGACCATCAGTGCTACTAA+AGG 0.575612 3:-96544026 None:intergenic
AATGCTCCAAGGAGAAGTTA+CGG 0.584884 3:+96547187 MsG0380017461.01.T01:CDS
GAGGCCTTTAGTAGCACTGA+TGG 0.586647 3:+96544022 MsG0380017461.01.T01:CDS
GATAGATATGCCGCAGCAGT+CGG 0.593565 3:+96546138 MsG0380017461.01.T01:CDS
AGATTATTCCAATCGGCCAA+AGG 0.597029 3:+96547482 MsG0380017461.01.T01:three_prime_UTR
CTTAACACAACTTCGATGAG+TGG 0.606083 3:+96541031 MsG0380017461.01.T01:exon
AAATATTCTAGACACTTGTA+GGG 0.611446 3:-96541734 None:intergenic
CTGAGATTAATGAATTAGAG+AGG 0.628262 3:+96541340 MsG0380017461.01.T01:CDS
AACTACGAAAGGTTCAACTA+GGG 0.640484 3:+96546079 MsG0380017461.01.T01:CDS
TCCATGGAAGGAATTGTCAA+GGG 0.644066 3:+96544064 MsG0380017461.01.T01:CDS
TTGCCGGAAGATGAATGTTG+TGG 0.644134 3:+96541084 MsG0380017461.01.T01:CDS
GGAACTTGCTGCTAGACTAA+GGG 0.645439 3:+96541555 MsG0380017461.01.T01:intron
TTATAAACTGATGCGAGCTG+CGG 0.645761 3:+96547345 MsG0380017461.01.T01:three_prime_UTR
CTTATGCTCACCGACTGCTG+CGG 0.652781 3:-96546148 None:intergenic
GAAAATTGCTGACGTCTCTG+TGG 0.672012 3:+96547226 MsG0380017461.01.T01:CDS
AATATTTGCATCAGTCAAAG+CGG 0.676651 3:+96547262 MsG0380017461.01.T01:CDS
ATCTTGTTAACCCATAACCA+TGG 0.686727 3:-96547312 None:intergenic
ATATGTACAGAAACTACGAA+AGG 0.693870 3:+96546068 MsG0380017461.01.T01:intron
GTCACAAGCTCACAATACCA+TGG 0.697448 3:+96547295 MsG0380017461.01.T01:three_prime_UTR
AGGAAAATAGCAAATGACTG+TGG 0.704917 3:+96541360 MsG0380017461.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACATAAATAGTTATATAAT+AGG + Chr3:96546914-96546933 MsG0380017461.01.T01:intron 10.0%
!! AATTTATAATAATAAGGATA+AGG - Chr3:96547556-96547575 None:intergenic 10.0%
!! AGTATGAATTTATAATAATA+AGG - Chr3:96547562-96547581 None:intergenic 10.0%
!! ATTATATAACTATTTATGTT+GGG - Chr3:96546914-96546933 None:intergenic 10.0%
!! GAAAATAGTAAAAAATAAAT+TGG - Chr3:96547519-96547538 None:intergenic 10.0%
!! TATTATATAACTATTTATGT+TGG - Chr3:96546915-96546934 None:intergenic 10.0%
!!! AATTAAATAAAAGTTTTGTA+TGG + Chr3:96547423-96547442 MsG0380017461.01.T01:three_prime_UTR 10.0%
!!! TATTTTTTACTATTTTCAAA+TGG + Chr3:96547522-96547541 MsG0380017461.01.T01:three_prime_UTR 10.0%
!! AAATAAAAGAATTGATGTAA+AGG + Chr3:96542479-96542498 MsG0380017461.01.T01:CDS 15.0%
!! AATGATCAATAAAATAAAAG+AGG - Chr3:96545638-96545657 None:intergenic 15.0%
!! AGTTAAATTAGAAAACTTAT+AGG - Chr3:96546822-96546841 None:intergenic 15.0%
!! ATTATAAGATTAAAGCTAAA+TGG + Chr3:96545072-96545091 MsG0380017461.01.T01:intron 15.0%
!! TACATAATTTATAGATATCA+AGG - Chr3:96544731-96544750 None:intergenic 15.0%
!! TACTTTCATATAATAATCAA+TGG + Chr3:96541004-96541023 MsG0380017461.01.T01:intron 15.0%
!! TATACAATTTATAGATATCA+AGG - Chr3:96546628-96546647 None:intergenic 15.0%
!! TTATAAGATTAAAGCTAAAT+GGG + Chr3:96545073-96545092 MsG0380017461.01.T01:intron 15.0%
!!! AATTTTTTAGTTAAATACTC+TGG + Chr3:96546709-96546728 MsG0380017461.01.T01:intron 15.0%
!!! ATAAAAGTAATTGATAATAC+GGG - Chr3:96541710-96541729 None:intergenic 15.0%
!!! GAAGATTTTTTTTTTTTTTG+TGG - Chr3:96543225-96543244 None:intergenic 15.0%
!!! GATAAAAGTAATTGATAATA+CGG - Chr3:96541711-96541730 None:intergenic 15.0%
!!! TGGAATATATTGTTATTTAT+TGG + Chr3:96542185-96542204 MsG0380017461.01.T01:intron 15.0%
!!! TTTTATTGCATCTTTTAATT+TGG + Chr3:96543815-96543834 MsG0380017461.01.T01:intron 15.0%
!! AAAACTCAAATGGTAATATA+AGG - Chr3:96545968-96545987 None:intergenic 20.0%
!! AAAATAAATAGAATGGCAAA+AGG - Chr3:96542691-96542710 None:intergenic 20.0%
!! AAACACTTATGAAACTATTT+GGG + Chr3:96546772-96546791 MsG0380017461.01.T01:intron 20.0%
!! ACAAATAATGATGAAATGTT+AGG - Chr3:96543923-96543942 None:intergenic 20.0%
!! ACATTTATTAACCATGAAAT+GGG - Chr3:96546319-96546338 None:intergenic 20.0%
!! AGCTATTTGATAAGTAAAAA+CGG - Chr3:96547148-96547167 None:intergenic 20.0%
!! ATCATGAAAAATTGAACTAT+TGG + Chr3:96542850-96542869 MsG0380017461.01.T01:intron 20.0%
!! ATTATAAGATTCAAGCAAAA+TGG + Chr3:96544462-96544481 MsG0380017461.01.T01:intron 20.0%
!! ATTTAACTGAAAACAACTTA+TGG + Chr3:96546834-96546853 MsG0380017461.01.T01:intron 20.0%
!! GAAAAATAACAAAACTCAAA+TGG - Chr3:96545978-96545997 None:intergenic 20.0%
!! GATTAAACCTAATGAAAATT+TGG - Chr3:96546269-96546288 None:intergenic 20.0%
!! GTCAATATAATTAAATGCAA+GGG - Chr3:96544391-96544410 None:intergenic 20.0%
!! TAAACACTTATGAAACTATT+TGG + Chr3:96546771-96546790 MsG0380017461.01.T01:intron 20.0%
!! TACACCTTAATCTATATTAA+TGG - Chr3:96543606-96543625 None:intergenic 20.0%
!! TATCAAATAGCTTTCTTTAA+TGG + Chr3:96547156-96547175 MsG0380017461.01.T01:intron 20.0%
!! TCATTTAGAAAGATTTGATT+CGG + Chr3:96544785-96544804 MsG0380017461.01.T01:intron 20.0%
!! TTATAAGATTCAAGCAAAAT+GGG + Chr3:96544463-96544482 MsG0380017461.01.T01:intron 20.0%
!! TTATCCAAATAATAATCAGA+AGG - Chr3:96545853-96545872 None:intergenic 20.0%
!!! AAGAATTTGAGATCTAATAA+AGG + Chr3:96543642-96543661 MsG0380017461.01.T01:intron 20.0%
!!! ATATTTTTACTGTACAATGT+TGG + Chr3:96545153-96545172 MsG0380017461.01.T01:intron 20.0%
!!! GATTTTTTTTTTTTTTGTGG+TGG - Chr3:96543222-96543241 None:intergenic 20.0%
!!! GTAGAATAGTTTTAGTTTTT+TGG + Chr3:96546241-96546260 MsG0380017461.01.T01:intron 20.0%
!!! TAATTATTTTAGAATGTCCT+TGG + Chr3:96542388-96542407 MsG0380017461.01.T01:intron 20.0%
!!! TACATATTTTGTAGATATCA+AGG - Chr3:96546364-96546383 None:intergenic 20.0%
!!! TTTAAGTTCAAGAAACATTA+TGG - Chr3:96543867-96543886 None:intergenic 20.0%
!!! TTTCATGATAGTTTAGTTTA+TGG - Chr3:96542839-96542858 None:intergenic 20.0%
!!! TTTTGCTTGAATCTTATAAT+TGG - Chr3:96544462-96544481 None:intergenic 20.0%
! AAAAAGGTAACAATTAGCAT+TGG + Chr3:96541444-96541463 MsG0380017461.01.T01:intron 25.0%
! AAAAGGTAACAATTAGCATT+GGG + Chr3:96541445-96541464 MsG0380017461.01.T01:intron 25.0%
! AAAATTGAACTATTGGATGA+AGG + Chr3:96542857-96542876 MsG0380017461.01.T01:intron 25.0%
! AAATATTCTAGACACTTGTA+GGG - Chr3:96541737-96541756 None:intergenic 25.0%
! AAGGCCATTAATATAGATTA+AGG + Chr3:96543599-96543618 MsG0380017461.01.T01:intron 25.0%
! AATAATTAAACTTCAGCACA+TGG - Chr3:96543499-96543518 None:intergenic 25.0%
! AATATAAAACCCTTCTCATT+TGG + Chr3:96543027-96543046 MsG0380017461.01.T01:intron 25.0%
! AATCTATTCAATACTCTTTC+TGG + Chr3:96542362-96542381 MsG0380017461.01.T01:intron 25.0%
! ACACACTATAATCATGAAAT+GGG - Chr3:96544688-96544707 None:intergenic 25.0%
! ACTTTGGACTAAAATTTGAT+TGG + Chr3:96544168-96544187 MsG0380017461.01.T01:intron 25.0%
! AGATCTAAAGATTAATGAGT+TGG + Chr3:96541999-96542018 MsG0380017461.01.T01:intron 25.0%
! AGTATAAGAAACAAACTTAC+TGG - Chr3:96541636-96541655 None:intergenic 25.0%
! AGTTTATGGTAAATGTAAGA+AGG - Chr3:96542825-96542844 None:intergenic 25.0%
! ATACACAACTATCAATTATG+AGG - Chr3:96546586-96546605 None:intergenic 25.0%
! ATATAAAACCCTTCTCATTT+GGG + Chr3:96543028-96543047 MsG0380017461.01.T01:intron 25.0%
! ATATATGTACAGAAACTAGA+AGG + Chr3:96544583-96544602 MsG0380017461.01.T01:intron 25.0%
! ATATTTGCAGTAACTTAACA+TGG + Chr3:96543451-96543470 MsG0380017461.01.T01:intron 25.0%
! ATCAAAAGAATTTATGAACC+TGG - Chr3:96542272-96542291 None:intergenic 25.0%
! ATCTTTGAACTAAATATGTG+AGG + Chr3:96545487-96545506 MsG0380017461.01.T01:intron 25.0%
! ATGAAGATAATAGAGCAAAA+AGG - Chr3:96545703-96545722 None:intergenic 25.0%
! ATTAAGAGAGAGAATCAATA+AGG + Chr3:96541120-96541139 MsG0380017461.01.T01:CDS 25.0%
! CACATTTATTAACCATGAAA+TGG - Chr3:96546320-96546339 None:intergenic 25.0%
! CAGAAGGAAAATAAATAGAA+TGG - Chr3:96542698-96542717 None:intergenic 25.0%
! CATTTAGAAAGATTTGATTC+GGG + Chr3:96544786-96544805 MsG0380017461.01.T01:intron 25.0%
! GAACTAAAAAATTGTATTGG+AGG + Chr3:96543052-96543071 MsG0380017461.01.T01:intron 25.0%
! GACAAATCTTAATGATCTTA+AGG + Chr3:96546116-96546135 MsG0380017461.01.T01:CDS 25.0%
! GATTAAACCTATGAAAAAGT+TGG - Chr3:96544646-96544665 None:intergenic 25.0%
! GGTCAATATAATTAAATGCA+AGG - Chr3:96544392-96544411 None:intergenic 25.0%
! GTTTGTAGTAATTGAAACAA+TGG - Chr3:96541513-96541532 None:intergenic 25.0%
! TAAAAAATTGTATTGGAGGA+GGG + Chr3:96543056-96543075 MsG0380017461.01.T01:intron 25.0%
! TAAACTCATTTAGAAAGACA+AGG + Chr3:96546411-96546430 MsG0380017461.01.T01:intron 25.0%
! TAAATGGAGATTATTCCAAT+CGG + Chr3:96547475-96547494 MsG0380017461.01.T01:three_prime_UTR 25.0%
! TACACACTATAATCATGAAA+TGG - Chr3:96544689-96544708 None:intergenic 25.0%
! TCATTCAAGAAAGAGTTATA+CGG - Chr3:96541659-96541678 None:intergenic 25.0%
! TGAAAAATCAAATGTGTGAA+TGG - Chr3:96544210-96544229 None:intergenic 25.0%
! TGAAGATAATAGAGCAAAAA+GGG - Chr3:96545702-96545721 None:intergenic 25.0%
! TGGTATATGATAGAACATTA+TGG + Chr3:96542031-96542050 MsG0380017461.01.T01:intron 25.0%
! TGTAAAAACATTAGTATGGA+TGG + Chr3:96545377-96545396 MsG0380017461.01.T01:intron 25.0%
! TGTATCATAGCAAAATCATA+AGG - Chr3:96542586-96542605 None:intergenic 25.0%
! TTCATAGGTTTAATCTTCAT+GGG + Chr3:96544651-96544670 MsG0380017461.01.T01:intron 25.0%
! TTCATTAGGTTTAATCTTCA+TGG + Chr3:96546273-96546292 MsG0380017461.01.T01:intron 25.0%
! TTCTCCTTCTGATTATTATT+TGG + Chr3:96545846-96545865 MsG0380017461.01.T01:intron 25.0%
! TTTCAATGAATGTGCTTTAT+GGG + Chr3:96546022-96546041 MsG0380017461.01.T01:intron 25.0%
! TTTCATAGGTTTAATCTTCA+TGG + Chr3:96544650-96544669 MsG0380017461.01.T01:intron 25.0%
!! AAAAGTGAAAAAGTTTTGCT+AGG + Chr3:96542314-96542333 MsG0380017461.01.T01:intron 25.0%
!! AAAGTGAAAAAGTTTTGCTA+GGG + Chr3:96542315-96542334 MsG0380017461.01.T01:intron 25.0%
!! AATGTTAGGTCAAACAATTT+TGG - Chr3:96543909-96543928 None:intergenic 25.0%
!! AGCAAAGATTGCATTTTTAA+AGG - Chr3:96542786-96542805 None:intergenic 25.0%
!! ATTATTTAGAACAATGACAG+TGG + Chr3:96543513-96543532 MsG0380017461.01.T01:intron 25.0%
!! CTAAATATGTGAGGATTTTA+TGG + Chr3:96545496-96545515 MsG0380017461.01.T01:intron 25.0%
!! GCAAAGATTGCATTTTTAAA+GGG - Chr3:96542785-96542804 None:intergenic 25.0%
!! TAATGTCTTATTGTCAATAC+TGG - Chr3:96544979-96544998 None:intergenic 25.0%
!! TCACATATTTAGTTCAAAGA+TGG - Chr3:96545488-96545507 None:intergenic 25.0%
!! TTGAACTTAAAAAAGCATAG+TGG + Chr3:96543876-96543895 MsG0380017461.01.T01:intron 25.0%
!! TTTTTGCATGCGTAAATATT+TGG + Chr3:96544106-96544125 MsG0380017461.01.T01:intron 25.0%
!!! AAAGTTTTGTATGGTTGATT+TGG + Chr3:96547432-96547451 MsG0380017461.01.T01:three_prime_UTR 25.0%
!!! AAGAGTTGATTTGATGAAAA+AGG + Chr3:96541428-96541447 MsG0380017461.01.T01:CDS 25.0%
!!! AAGTTTTGTATGGTTGATTT+GGG + Chr3:96547433-96547452 MsG0380017461.01.T01:three_prime_UTR 25.0%
!!! AGTATTGACAATAAGACATT+AGG + Chr3:96544978-96544997 MsG0380017461.01.T01:intron 25.0%
!!! ATCTCAAAAATTTGAGTTGT+TGG + Chr3:96543774-96543793 MsG0380017461.01.T01:intron 25.0%
!!! ATGGTAATATAAGGTTTTGT+TGG - Chr3:96545959-96545978 None:intergenic 25.0%
!!! GATTTGGATAAAGTCTTATT+TGG - Chr3:96545444-96545463 None:intergenic 25.0%
!!! TCTCAAAAATTTGAGTTGTT+GGG + Chr3:96543775-96543794 MsG0380017461.01.T01:intron 25.0%
!!! TTGAATATAATGTGTTGCTT+AGG + Chr3:96541234-96541253 MsG0380017461.01.T01:intron 25.0%
AAAAAAATCACGTGTGTGAA+TGG - Chr3:96544826-96544845 None:intergenic 30.0%
AACTATCAATTATGAGGTGA+GGG - Chr3:96546580-96546599 None:intergenic 30.0%
AATAGAGCAAAAAGGGTTTA+AGG - Chr3:96545695-96545714 None:intergenic 30.0%
AATATTTGCATCAGTCAAAG+CGG + Chr3:96547262-96547281 MsG0380017461.01.T01:CDS 30.0%
ACAATATATTCCAGACAACT+AGG - Chr3:96542178-96542197 None:intergenic 30.0%
ACACTATAATCATGAAATGG+GGG - Chr3:96544686-96544705 None:intergenic 30.0%
AGACAGATGACATATGAAAA+TGG - Chr3:96545606-96545625 None:intergenic 30.0%
AGTGGTTGTAATTAAAGAGA+TGG + Chr3:96542096-96542115 MsG0380017461.01.T01:intron 30.0%
ATAATTAAATGCAAGGGTCA+AGG - Chr3:96544385-96544404 None:intergenic 30.0%
ATATGTACAGAAACTACGAA+AGG + Chr3:96546068-96546087 MsG0380017461.01.T01:intron 30.0%
ATCATTTCACAGGTATTCAT+CGG + Chr3:96542522-96542541 MsG0380017461.01.T01:intron 30.0%
ATGCATAAAATATGCAAGGT+CGG + Chr3:96543182-96543201 MsG0380017461.01.T01:intron 30.0%
ATTGAATTCGATCATTTCAC+AGG + Chr3:96542512-96542531 MsG0380017461.01.T01:CDS 30.0%
CAAATATTCTAGACACTTGT+AGG - Chr3:96541738-96541757 None:intergenic 30.0%
CAATTCAATCAAGTCTTTGA+AGG + Chr3:96541174-96541193 MsG0380017461.01.T01:CDS 30.0%
CACACTATAATCATGAAATG+GGG - Chr3:96544687-96544706 None:intergenic 30.0%
CCAAATCATTAAGACATAAG+TGG + Chr3:96545457-96545476 MsG0380017461.01.T01:intron 30.0%
CCACTTATGTCTTAATGATT+TGG - Chr3:96545460-96545479 None:intergenic 30.0%
CCATTTCTCAAAAGAAATGA+AGG + Chr3:96543580-96543599 MsG0380017461.01.T01:intron 30.0%
CTAAAAAATTGTATTGGAGG+AGG + Chr3:96543055-96543074 MsG0380017461.01.T01:intron 30.0%
CTGAGATTAATGAATTAGAG+AGG + Chr3:96541340-96541359 MsG0380017461.01.T01:CDS 30.0%
CTTTCAATGAATGTGCTTTA+TGG + Chr3:96546021-96546040 MsG0380017461.01.T01:intron 30.0%
GACAATGCATAAAATATGCA+AGG + Chr3:96543178-96543197 MsG0380017461.01.T01:intron 30.0%
GACAGATGACATATGAAAAT+GGG - Chr3:96545605-96545624 None:intergenic 30.0%
GATGAAGATGACAAACAAAA+GGG - Chr3:96544872-96544891 None:intergenic 30.0%
GCATTTAAGAATCCTAATCA+GGG + Chr3:96545785-96545804 MsG0380017461.01.T01:intron 30.0%
GGCTTGTAAAAACATTAGTA+TGG + Chr3:96545373-96545392 MsG0380017461.01.T01:intron 30.0%
GGGGAACTAAAAAATTGTAT+TGG + Chr3:96543049-96543068 MsG0380017461.01.T01:intron 30.0%
GTAATTAAAGAGATGGTACA+TGG + Chr3:96542103-96542122 MsG0380017461.01.T01:intron 30.0%
GTGACACCTTATTAGATAAA+CGG - Chr3:96546505-96546524 None:intergenic 30.0%
GTTTAATCTTCATGGATTCA+TGG + Chr3:96546281-96546300 MsG0380017461.01.T01:intron 30.0%
TAATTAAATGCAAGGGTCAA+GGG - Chr3:96544384-96544403 None:intergenic 30.0%
TACACCCAAAACTATAGTAA+TGG + Chr3:96543670-96543689 MsG0380017461.01.T01:intron 30.0%
TATAAAACCCTTCTCATTTG+GGG + Chr3:96543029-96543048 MsG0380017461.01.T01:intron 30.0%
TATTAGATAAACGGAGATCA+TGG - Chr3:96546496-96546515 None:intergenic 30.0%
TCAAATAAGTCAATCCAAAC+AGG - Chr3:96546736-96546755 None:intergenic 30.0%
TCATAGGTTTAATCTTCATG+GGG + Chr3:96544652-96544671 MsG0380017461.01.T01:intron 30.0%
TCGTAGTTTCTGTACATATA+TGG - Chr3:96546067-96546086 None:intergenic 30.0%
TGAAAAAAGAAAGGAGTAAG+TGG + Chr3:96542953-96542972 MsG0380017461.01.T01:intron 30.0%
TGATCTCCGTTTATCTAATA+AGG + Chr3:96546496-96546515 MsG0380017461.01.T01:intron 30.0%
TGGTAAGACTATATGAGATA+AGG + Chr3:96541780-96541799 MsG0380017461.01.T01:CDS 30.0%
TTGAAACAATGGAATAAGCA+AGG - Chr3:96541502-96541521 None:intergenic 30.0%
TTGGAATAATCTCCATTTAC+AGG - Chr3:96547474-96547493 None:intergenic 30.0%
TTGTCAATACTGGAATTTCA+TGG - Chr3:96544343-96544362 None:intergenic 30.0%
TTTATTAACCATGAAATGGG+AGG - Chr3:96546316-96546335 None:intergenic 30.0%
! AAGTGAAAAAGTTTTGCTAG+GGG + Chr3:96542316-96542335 MsG0380017461.01.T01:intron 30.0%
! GCTAAAACTTGTTCAGAAAA+AGG - Chr3:96543964-96543983 None:intergenic 30.0%
! GGTTCCATTACTATAGTTTT+GGG - Chr3:96543677-96543696 None:intergenic 30.0%
! TAATGAGTTGGATCGAAATA+TGG + Chr3:96542011-96542030 MsG0380017461.01.T01:intron 30.0%
! TAATGTCTTGTTGTCAATAC+TGG - Chr3:96544353-96544372 None:intergenic 30.0%
! TATAAAGCTTGTTCATTCCA+TGG + Chr3:96544048-96544067 MsG0380017461.01.T01:CDS 30.0%
! TTACACAGTTTTCCTGTAAA+TGG + Chr3:96547459-96547478 MsG0380017461.01.T01:three_prime_UTR 30.0%
! TTTTTCATTTATGCTTGTGC+AGG + Chr3:96542211-96542230 MsG0380017461.01.T01:intron 30.0%
!! AGACATTGACTTCTTTAGTA+AGG + Chr3:96541898-96541917 MsG0380017461.01.T01:intron 30.0%
!! ATTTCTTTTGAGAAATGGAG+AGG - Chr3:96543578-96543597 None:intergenic 30.0%
!! CCTTCATTTCTTTTGAGAAA+TGG - Chr3:96543583-96543602 None:intergenic 30.0%
!! TATTTCCAAAAGAGCATTGT+AGG - Chr3:96542464-96542483 None:intergenic 30.0%
!!! AGTTTTGTATGGTTGATTTG+GGG + Chr3:96547434-96547453 MsG0380017461.01.T01:three_prime_UTR 30.0%
!!! GTGGTTTTATTACATCTCTT+AGG + Chr3:96542887-96542906 MsG0380017461.01.T01:intron 30.0%
!!! TGATTTTAAGAAGTACCACT+AGG + Chr3:96545122-96545141 MsG0380017461.01.T01:intron 30.0%
!!! TTTGGTGCCAAATTTTCATT+AGG + Chr3:96546259-96546278 MsG0380017461.01.T01:intron 30.0%
AAAAAATCCTGAAGCCTTAG+TGG - Chr3:96544534-96544553 None:intergenic 35.0%
AAAATATTCCTGAAGCCTAG+TGG - Chr3:96545140-96545159 None:intergenic 35.0%
AAACTACGAAAGGTTCAACT+AGG + Chr3:96546078-96546097 MsG0380017461.01.T01:CDS 35.0%
AAACTATTCTACCACCAAAG+CGG - Chr3:96546233-96546252 None:intergenic 35.0%
AAACTATTTGGGAGAGCTTA+TGG + Chr3:96546783-96546802 MsG0380017461.01.T01:intron 35.0%
AAAGAGATGGTACATGGATA+AGG + Chr3:96542109-96542128 MsG0380017461.01.T01:intron 35.0%
AAAGCAATGACATGCATAAC+AGG + Chr3:96542134-96542153 MsG0380017461.01.T01:intron 35.0%
AACTACGAAAGGTTCAACTA+GGG + Chr3:96546079-96546098 MsG0380017461.01.T01:CDS 35.0%
AACTCCTTATCAGTCTATGA+TGG - Chr3:96545038-96545057 None:intergenic 35.0%
AAGAAATAGAGGACATTGGA+AGG + Chr3:96542976-96542995 MsG0380017461.01.T01:intron 35.0%
AAGGATCATGAACTACTCAA+AGG - Chr3:96541483-96541502 None:intergenic 35.0%
AAGGTAGGGAAAAACATTGA+AGG - Chr3:96543989-96544008 None:intergenic 35.0%
AAGTCCATCATAGACTGATA+AGG + Chr3:96545031-96545050 MsG0380017461.01.T01:intron 35.0%
AATAGCTTTCTTTAATGGCC+AGG + Chr3:96547161-96547180 MsG0380017461.01.T01:intron 35.0%
AATCATGAAATGGGGGAAAA+AGG - Chr3:96544679-96544698 None:intergenic 35.0%
AATGATAAGGAGTTAGAAGG+TGG + Chr3:96544434-96544453 MsG0380017461.01.T01:intron 35.0%
ACAACATTAGAGAGAGAGTT+GGG + Chr3:96541812-96541831 MsG0380017461.01.T01:intron 35.0%
AGAGAGAGAATCAATAAGGA+AGG + Chr3:96541124-96541143 MsG0380017461.01.T01:CDS 35.0%
AGAGGGATACATTTGATATG+AGG - Chr3:96542614-96542633 None:intergenic 35.0%
AGGAAAATAGCAAATGACTG+TGG + Chr3:96541360-96541379 MsG0380017461.01.T01:CDS 35.0%
AGTCAAATTACTAGAGGTAG+AGG + Chr3:96541941-96541960 MsG0380017461.01.T01:intron 35.0%
AGTCCCTATAGTAGAAAAGA+TGG + Chr3:96541837-96541856 MsG0380017461.01.T01:intron 35.0%
ATAAAACCCTTCTCATTTGG+GGG + Chr3:96543030-96543049 MsG0380017461.01.T01:intron 35.0%
ATAGAGCAAATAGAGAAGAG+AGG - Chr3:96542642-96542661 None:intergenic 35.0%
ATATCAAACCTCTGCAAGAT+TGG - Chr3:96546542-96546561 None:intergenic 35.0%
ATCTTGTTAACCCATAACCA+TGG - Chr3:96547315-96547334 None:intergenic 35.0%
CAACTATCAATTATGAGGTG+AGG - Chr3:96546581-96546600 None:intergenic 35.0%
CAGAATGATAAGGAGTTAGA+AGG + Chr3:96544431-96544450 MsG0380017461.01.T01:intron 35.0%
CATATCAAATGTATCCCTCT+CGG + Chr3:96542614-96542633 MsG0380017461.01.T01:intron 35.0%
CGATGAAGATGACAAACAAA+AGG - Chr3:96544873-96544892 None:intergenic 35.0%
CTACTTCTCAAAGATATGGA+GGG - Chr3:96543698-96543717 None:intergenic 35.0%
CTATTTGCTCTATCTGTTCA+GGG + Chr3:96542649-96542668 MsG0380017461.01.T01:intron 35.0%
CTCCTTATCATTCTGTATGA+TGG - Chr3:96544426-96544445 None:intergenic 35.0%
CTCTCTACTTCTCAAAGATA+TGG - Chr3:96543702-96543721 None:intergenic 35.0%
CTTGAAACTGCAATAAGGTA+GGG - Chr3:96544003-96544022 None:intergenic 35.0%
GACCATCATACAGAATGATA+AGG + Chr3:96544421-96544440 MsG0380017461.01.T01:intron 35.0%
GAGGGATACATTTGATATGA+GGG - Chr3:96542613-96542632 None:intergenic 35.0%
GAGTTAACAAAAAGAGAAGC+AGG - Chr3:96544245-96544264 None:intergenic 35.0%
GCAGTAAGACATGTAATGTA+CGG - Chr3:96544560-96544579 None:intergenic 35.0%
GGAAAGGCTTGAAAAAAGAA+AGG + Chr3:96542944-96542963 MsG0380017461.01.T01:intron 35.0%
GGCATTTAAGAATCCTAATC+AGG + Chr3:96545784-96545803 MsG0380017461.01.T01:intron 35.0%
GTGTATCTTCTTTCTGTATG+AGG + Chr3:96544704-96544723 MsG0380017461.01.T01:intron 35.0%
TAAACATGCACAAACCATAC+AGG - Chr3:96545348-96545367 None:intergenic 35.0%
TAACAGGTTTGATGAGAATG+TGG + Chr3:96542150-96542169 MsG0380017461.01.T01:intron 35.0%
TAAGCTCACTTAGAAAGACA+AGG + Chr3:96546681-96546700 MsG0380017461.01.T01:intron 35.0%
TACCTTATTGCAGTTTCAAG+AGG + Chr3:96544003-96544022 MsG0380017461.01.T01:intron 35.0%
TACTAAGAACAAGATGTGCT+AGG - Chr3:96542735-96542754 None:intergenic 35.0%
TAGACTGATAAGGAGTTAGA+AGG + Chr3:96545041-96545060 MsG0380017461.01.T01:intron 35.0%
TAGTATGGATGGTTGATTAG+AGG + Chr3:96545388-96545407 MsG0380017461.01.T01:intron 35.0%
TATTTGTATTCACGTTGCGT+TGG + Chr3:96541752-96541771 MsG0380017461.01.T01:CDS 35.0%
TCATATGTCATCTGTCTGTT+GGG + Chr3:96545609-96545628 MsG0380017461.01.T01:intron 35.0%
TCTACTTCTCAAAGATATGG+AGG - Chr3:96543699-96543718 None:intergenic 35.0%
TCTATTTGCTCTATCTGTTC+AGG + Chr3:96542648-96542667 MsG0380017461.01.T01:intron 35.0%
TCTTAGTTCAGGATCTTGAA+AGG + Chr3:96541265-96541284 MsG0380017461.01.T01:intron 35.0%
TCTTGAAACTGCAATAAGGT+AGG - Chr3:96544004-96544023 None:intergenic 35.0%
TGACAAACAAAAGGGACAAA+AGG - Chr3:96544864-96544883 None:intergenic 35.0%
TGCAGAGGTTTGATATTCAT+GGG + Chr3:96546546-96546565 MsG0380017461.01.T01:intron 35.0%
TGCATAAAATATGCAAGGTC+GGG + Chr3:96543183-96543202 MsG0380017461.01.T01:intron 35.0%
TGTACAATGAGTGTAACATC+TGG - Chr3:96545278-96545297 None:intergenic 35.0%
TTAAATACTCTGGTCCTGTT+TGG + Chr3:96546719-96546738 MsG0380017461.01.T01:intron 35.0%
TTAACAAAAAGAGAAGCAGG+AGG - Chr3:96544242-96544261 None:intergenic 35.0%
TTCATATGTCATCTGTCTGT+TGG + Chr3:96545608-96545627 MsG0380017461.01.T01:intron 35.0%
TTGCAGAGGTTTGATATTCA+TGG + Chr3:96546545-96546564 MsG0380017461.01.T01:intron 35.0%
! AAAGTCTCGTTTTATGTGGT+TGG + Chr3:96545307-96545326 MsG0380017461.01.T01:intron 35.0%
! AAGTCTCGTTTTATGTGGTT+GGG + Chr3:96545308-96545327 MsG0380017461.01.T01:intron 35.0%
! AGACGTCAGCAATTTTCATT+TGG - Chr3:96547223-96547242 None:intergenic 35.0%
! AGTGAAAAAGTTTTGCTAGG+GGG + Chr3:96542317-96542336 MsG0380017461.01.T01:intron 35.0%
! CATATCTTTGAGAAGTAGAG+AGG + Chr3:96543700-96543719 MsG0380017461.01.T01:intron 35.0%
! CCACCATCTTTTCTACTATA+GGG - Chr3:96541843-96541862 None:intergenic 35.0%
! GGCATTAGATTTTTGCTCTT+TGG + Chr3:96544618-96544637 MsG0380017461.01.T01:intron 35.0%
! GGGTTCCATTACTATAGTTT+TGG - Chr3:96543678-96543697 None:intergenic 35.0%
! TCCACCATCTTTTCTACTAT+AGG - Chr3:96541844-96541863 None:intergenic 35.0%
! TGAGAAAGTCTCGTTTTATG+TGG + Chr3:96545303-96545322 MsG0380017461.01.T01:intron 35.0%
! TTCCAGCTAAAGTGTCAATT+CGG - Chr3:96547056-96547075 None:intergenic 35.0%
! TTCTACCTACAATGCTCTTT+TGG + Chr3:96542456-96542475 MsG0380017461.01.T01:CDS 35.0%
! TTCTCTGATGAAAGCTTTTC+AGG + Chr3:96546179-96546198 MsG0380017461.01.T01:intron 35.0%
!! CTGCTTGTTGTCATTCTTAT+TGG + Chr3:96547107-96547126 MsG0380017461.01.T01:intron 35.0%
!! GAAACCTTAAGGCTTTGTTT+GGG - Chr3:96543389-96543408 None:intergenic 35.0%
!! GTGATTGAAAAGTACCACTA+AGG + Chr3:96544517-96544536 MsG0380017461.01.T01:intron 35.0%
!! GTGTTGTGTTGATTTGACTT+TGG + Chr3:96544152-96544171 MsG0380017461.01.T01:intron 35.0%
!! TAGAAAAGATGGTGGAAACT+AGG + Chr3:96541848-96541867 MsG0380017461.01.T01:intron 35.0%
!! TTATCAGTCTATGATGGACT+TGG - Chr3:96545032-96545051 None:intergenic 35.0%
!!! ACTGCTTCAACTTGTTTTGT+TGG + Chr3:96545763-96545782 MsG0380017461.01.T01:intron 35.0%
!!! AGTTTTTTTCCCCTTCTGTT+AGG + Chr3:96541534-96541553 MsG0380017461.01.T01:intron 35.0%
!!! TTTGGTGCCAACTTTTTCAT+AGG + Chr3:96544636-96544655 MsG0380017461.01.T01:intron 35.0%
!!! TTTTTTTTTTGTGGTGGCCA+GGG - Chr3:96543216-96543235 None:intergenic 35.0%
!!! TTTTTTTTTTTGTGGTGGCC+AGG - Chr3:96543217-96543236 None:intergenic 35.0%
AAAATCTAATGCCACCAAGG+CGG - Chr3:96544611-96544630 None:intergenic 40.0%
AAATAGAGGACATTGGAAGG+AGG + Chr3:96542979-96542998 MsG0380017461.01.T01:intron 40.0%
AACCATGAAATGGGAGGAAA+AGG - Chr3:96546310-96546329 None:intergenic 40.0%
AACTCCCAAACAAAGCCTTA+AGG + Chr3:96543382-96543401 MsG0380017461.01.T01:intron 40.0%
AACTTCGATGAGTGGCAATT+TGG + Chr3:96541039-96541058 MsG0380017461.01.T01:exon 40.0%
AATGCTCCAAGGAGAAGTTA+CGG + Chr3:96547187-96547206 MsG0380017461.01.T01:CDS 40.0%
AATTGTATTGGAGGAGGGTT+TGG + Chr3:96543061-96543080 MsG0380017461.01.T01:intron 40.0%
AATTGTCAAGGGAAGTGAAC+AGG + Chr3:96544075-96544094 MsG0380017461.01.T01:CDS 40.0%
ACAGGTATTCATCGGAGAAT+TGG + Chr3:96542530-96542549 MsG0380017461.01.T01:intron 40.0%
AGAACTGTATGCTCAAATCC+AGG + Chr3:96542251-96542270 MsG0380017461.01.T01:intron 40.0%
AGATTATTCCAATCGGCCAA+AGG + Chr3:96547482-96547501 MsG0380017461.01.T01:three_prime_UTR 40.0%
AGCTCACAATACCATGGTTA+TGG + Chr3:96547301-96547320 MsG0380017461.01.T01:three_prime_UTR 40.0%
AGGATATCCACTCTTAGTTC+AGG + Chr3:96541254-96541273 MsG0380017461.01.T01:intron 40.0%
AGTAAGGAGAGTAGATCAGA+TGG + Chr3:96541914-96541933 MsG0380017461.01.T01:intron 40.0%
AGTTCAGGATCTTGAAAGGA+AGG + Chr3:96541269-96541288 MsG0380017461.01.T01:intron 40.0%
ATTGTATTGGAGGAGGGTTT+GGG + Chr3:96543062-96543081 MsG0380017461.01.T01:intron 40.0%
ATTTCATGGCGCTATAGAAG+TGG - Chr3:96544329-96544348 None:intergenic 40.0%
CAACATTAGAGAGAGAGTTG+GGG + Chr3:96541813-96541832 MsG0380017461.01.T01:intron 40.0%
CAATTATGAGGTGAGGGAAA+AGG - Chr3:96546574-96546593 None:intergenic 40.0%
CATGTTAGAGAAAGCCTGTA+TGG + Chr3:96545331-96545350 MsG0380017461.01.T01:intron 40.0%
CATTCTCTTAGCGAATCACT+TGG + Chr3:96541405-96541424 MsG0380017461.01.T01:CDS 40.0%
CCCTATAGTAGAAAAGATGG+TGG + Chr3:96541840-96541859 MsG0380017461.01.T01:intron 40.0%
CGGGAAAGATCAATTGTTAG+AGG + Chr3:96545411-96545430 MsG0380017461.01.T01:intron 40.0%
CTTAACACAACTTCGATGAG+TGG + Chr3:96541031-96541050 MsG0380017461.01.T01:exon 40.0%
CTTACTGGACGATTTCTGAT+TGG - Chr3:96541621-96541640 None:intergenic 40.0%
GACAACATTAGAGAGAGAGT+TGG + Chr3:96541811-96541830 MsG0380017461.01.T01:intron 40.0%
GACATATGAAAATGGGTGCA+TGG - Chr3:96545598-96545617 None:intergenic 40.0%
GATCCACACTCGATTAATCA+AGG + Chr3:96543722-96543741 MsG0380017461.01.T01:intron 40.0%
GCAAAAATCTAATGCCACCA+AGG - Chr3:96544614-96544633 None:intergenic 40.0%
GCAGAGGTTTGATATTCATG+GGG + Chr3:96546547-96546566 MsG0380017461.01.T01:intron 40.0%
GCATAAAATATGCAAGGTCG+GGG + Chr3:96543184-96543203 MsG0380017461.01.T01:intron 40.0%
GCTCACAATACCATGGTTAT+GGG + Chr3:96547302-96547321 MsG0380017461.01.T01:three_prime_UTR 40.0%
GGAGAACAGATATGTACAGA+AGG - Chr3:96542714-96542733 None:intergenic 40.0%
GGAGGTAGTCAAATTACTAG+AGG + Chr3:96541935-96541954 MsG0380017461.01.T01:intron 40.0%
GGAGTAAGTGGAAGAAATAG+AGG + Chr3:96542965-96542984 MsG0380017461.01.T01:intron 40.0%
GGTAAATGTAAGAAGGCAAG+TGG - Chr3:96542818-96542837 None:intergenic 40.0%
GGTTTGTGCATGTTTAGAGA+AGG + Chr3:96545352-96545371 MsG0380017461.01.T01:intron 40.0%
GTGGAAGAAATAGAGGACAT+TGG + Chr3:96542972-96542991 MsG0380017461.01.T01:intron 40.0%
GTTACTACTACTGTTGCTGT+TGG - Chr3:96545673-96545692 None:intergenic 40.0%
TAAGAATCCTAATCAGGGAC+TGG + Chr3:96545790-96545809 MsG0380017461.01.T01:intron 40.0%
TATGGATGGTTGATTAGAGG+CGG + Chr3:96545391-96545410 MsG0380017461.01.T01:intron 40.0%
TCAAGATCCTGAACTAAGAG+TGG - Chr3:96541264-96541283 None:intergenic 40.0%
TCATTCTGTATGATGGTCGA+TGG - Chr3:96544419-96544438 None:intergenic 40.0%
TCCATGGAAGGAATTGTCAA+GGG + Chr3:96544064-96544083 MsG0380017461.01.T01:CDS 40.0%
TTAGTTCCCCCAAATGAGAA+GGG - Chr3:96543039-96543058 None:intergenic 40.0%
TTATAAACTGATGCGAGCTG+CGG + Chr3:96547345-96547364 MsG0380017461.01.T01:three_prime_UTR 40.0%
TTATTATATCGTCGCCGCTT+TGG + Chr3:96546216-96546235 MsG0380017461.01.T01:intron 40.0%
TTCCATGGAAGGAATTGTCA+AGG + Chr3:96544063-96544082 MsG0380017461.01.T01:CDS 40.0%
TTCCGAATTGACACTTTAGC+TGG + Chr3:96547051-96547070 MsG0380017461.01.T01:intron 40.0%
TTCTAATCCAGTCCCTGATT+AGG - Chr3:96545800-96545819 None:intergenic 40.0%
TTGGTATTTGCCACTGTACA+GGG + Chr3:96542407-96542426 MsG0380017461.01.T01:intron 40.0%
TTTGGGGGAGAGAAATATAG+GGG - Chr3:96543339-96543358 None:intergenic 40.0%
! AAGCTTGTTCATTCCATGGA+AGG + Chr3:96544052-96544071 MsG0380017461.01.T01:CDS 40.0%
! CTTTGGGGGAGAGAAATATA+GGG - Chr3:96543340-96543359 None:intergenic 40.0%
! GGATTTTATGGAGTCGATGA+TGG + Chr3:96545508-96545527 MsG0380017461.01.T01:intron 40.0%
! TCTGGTGTTGAAGCACTATT+TGG - Chr3:96546975-96546994 None:intergenic 40.0%
! TGGTTTGTGAGATTGATTGC+CGG + Chr3:96541068-96541087 MsG0380017461.01.T01:CDS 40.0%
! TTTAGTTCCCCCAAATGAGA+AGG - Chr3:96543040-96543059 None:intergenic 40.0%
!! AAAAGTACCACTAAGGCTTC+AGG + Chr3:96544524-96544543 MsG0380017461.01.T01:intron 40.0%
!! AAGAGTGTTATGTGGATGAG+TGG + Chr3:96545218-96545237 MsG0380017461.01.T01:intron 40.0%
!! GCTGAGATAAGAGTGTTATG+TGG + Chr3:96545210-96545229 MsG0380017461.01.T01:intron 40.0%
!! GGAAACCTTAAGGCTTTGTT+TGG - Chr3:96543390-96543409 None:intergenic 40.0%
!! TAAGGCTTTGTTTGGGAGTT+TGG - Chr3:96543382-96543401 None:intergenic 40.0%
!!! AGTATTTTGGGTTCGAAGCA+TGG + Chr3:96543428-96543447 MsG0380017461.01.T01:intron 40.0%
AAGGAGAGTAGATCAGATGG+AGG + Chr3:96541917-96541936 MsG0380017461.01.T01:intron 45.0%
AATTCCTGGCCAACTGATCA+GGG + Chr3:96543545-96543564 MsG0380017461.01.T01:intron 45.0%
ACATTGGAAGGAGGAGCTTT+GGG + Chr3:96542988-96543007 MsG0380017461.01.T01:intron 45.0%
ACCCAAAATACTCTCGCATG+AGG - Chr3:96543420-96543439 None:intergenic 45.0%
ACGTGTGTGAATGGTACAGA+AGG - Chr3:96544817-96544836 None:intergenic 45.0%
AGAGTTAACTGCAGCTCTTG+AGG + Chr3:96544130-96544149 MsG0380017461.01.T01:intron 45.0%
AGCAAGCCGTGTATCTGATA+TGG + Chr3:96547003-96547022 MsG0380017461.01.T01:intron 45.0%
AGCAGCAAGTTCCTAACAGA+AGG - Chr3:96541548-96541567 None:intergenic 45.0%
AGGGAAAGTGGGAAACCTTA+AGG - Chr3:96543400-96543419 None:intergenic 45.0%
AGTGGCGAACATAGAATTCC+TGG + Chr3:96543531-96543550 MsG0380017461.01.T01:intron 45.0%
AGTTGTTGGGTGAAGAGACT+TGG + Chr3:96543788-96543807 MsG0380017461.01.T01:intron 45.0%
ATGGATGGTTGATTAGAGGC+GGG + Chr3:96545392-96545411 MsG0380017461.01.T01:intron 45.0%
ATTCCAATCGGCCAAAGGAT+TGG + Chr3:96547487-96547506 MsG0380017461.01.T01:three_prime_UTR 45.0%
ATTTCGCAGAGCTATAGCAG+CGG - Chr3:96544955-96544974 None:intergenic 45.0%
CAGCAAGTTCCTAACAGAAG+GGG - Chr3:96541546-96541565 None:intergenic 45.0%
CCACACTCGATTAATCAAGG+AGG + Chr3:96543725-96543744 MsG0380017461.01.T01:intron 45.0%
CCCAAAATACTCTCGCATGA+GGG - Chr3:96543419-96543438 None:intergenic 45.0%
CCGATGCCATATCAGATACA+CGG - Chr3:96547012-96547031 None:intergenic 45.0%
CCGTGTATCTGATATGGCAT+CGG + Chr3:96547009-96547028 MsG0380017461.01.T01:intron 45.0%
CCTCCTTGATTAATCGAGTG+TGG - Chr3:96543728-96543747 None:intergenic 45.0%
CTGTACAGTGGCAAATACCA+AGG - Chr3:96542408-96542427 None:intergenic 45.0%
CTTGGTATTTGCCACTGTAC+AGG + Chr3:96542406-96542425 MsG0380017461.01.T01:intron 45.0%
GAAAATTGCTGACGTCTCTG+TGG + Chr3:96547226-96547245 MsG0380017461.01.T01:CDS 45.0%
GAATGTGGAACCTAGTTGTC+TGG + Chr3:96542165-96542184 MsG0380017461.01.T01:intron 45.0%
GAGTGGCAATTTGGATGAAC+TGG + Chr3:96541048-96541067 MsG0380017461.01.T01:CDS 45.0%
GCAAAATGTGTAAAACGCCG+CGG + Chr3:96544300-96544319 MsG0380017461.01.T01:intron 45.0%
GCAGCAAGTTCCTAACAGAA+GGG - Chr3:96541547-96541566 None:intergenic 45.0%
GCGGCGACGATATAATAAAC+TGG - Chr3:96546214-96546233 None:intergenic 45.0%
GCTCCACAACATTCATCTTC+CGG - Chr3:96541090-96541109 None:intergenic 45.0%
GGCCTCTTGAAACTGCAATA+AGG - Chr3:96544008-96544027 None:intergenic 45.0%
GTCACAAGCTCACAATACCA+TGG + Chr3:96547295-96547314 MsG0380017461.01.T01:three_prime_UTR 45.0%
GTTGTTGGGTGAAGAGACTT+GGG + Chr3:96543789-96543808 MsG0380017461.01.T01:intron 45.0%
TCCCTTGACAATTCCTTCCA+TGG - Chr3:96544068-96544087 None:intergenic 45.0%
TGGACGATTTCTGATTGGCA+CGG - Chr3:96541616-96541635 None:intergenic 45.0%
TTCACGTTGCGTTGGATATG+TGG + Chr3:96541760-96541779 MsG0380017461.01.T01:CDS 45.0%
TTCCAATCGGCCAAAGGATT+GGG + Chr3:96547488-96547507 MsG0380017461.01.T01:three_prime_UTR 45.0%
TTGACACCGTAACTTCTCCT+TGG - Chr3:96547196-96547215 None:intergenic 45.0%
TTGCCGGAAGATGAATGTTG+TGG + Chr3:96541084-96541103 MsG0380017461.01.T01:CDS 45.0%
TTGTATTGGAGGAGGGTTTG+GGG + Chr3:96543063-96543082 MsG0380017461.01.T01:intron 45.0%
! ACGACCATCAGTGCTACTAA+AGG - Chr3:96544029-96544048 None:intergenic 45.0%
! ACTACTGTTGCTGTTGGCAA+AGG - Chr3:96545667-96545686 None:intergenic 45.0%
! CTACTGTTGCTGTTGGCAAA+GGG - Chr3:96545666-96545685 None:intergenic 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG - Chr3:96543377-96543396 None:intergenic 45.0%
! GACCTTTTCCTCCCATTTCA+TGG + Chr3:96546305-96546324 MsG0380017461.01.T01:intron 45.0%
! GCGGCGTTTTACACATTTTG+CGG - Chr3:96544301-96544320 None:intergenic 45.0%
! TACTGTTGCTGTTGGCAAAG+GGG - Chr3:96545665-96545684 None:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG + Chr3:96543156-96543175 MsG0380017461.01.T01:intron 45.0%
! TGTATGATGGTCGATGGACT+TGG - Chr3:96544413-96544432 None:intergenic 45.0%
!! AAGAAGTACCACTAGGCTTC+AGG + Chr3:96545129-96545148 MsG0380017461.01.T01:intron 45.0%
!! AGATGGTGGAAACTAGGCTT+AGG + Chr3:96541854-96541873 MsG0380017461.01.T01:intron 45.0%
!! AGGAACTTGCTGCTAGACTA+AGG + Chr3:96541554-96541573 MsG0380017461.01.T01:intron 45.0%
!! CTTAGGCTTTGTTGCGAGTT+TGG + Chr3:96542904-96542923 MsG0380017461.01.T01:intron 45.0%
!! GCTTTGGGGGAGAGAAATAT+AGG - Chr3:96543341-96543360 None:intergenic 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG - Chr3:96543378-96543397 None:intergenic 45.0%
!! GGAACTTGCTGCTAGACTAA+GGG + Chr3:96541555-96541574 MsG0380017461.01.T01:intron 45.0%
!! TCTCCTTGGAGCATTTTTCC+TGG - Chr3:96547182-96547201 None:intergenic 45.0%
!!! CCCTCATGCGAGAGTATTTT+GGG + Chr3:96543416-96543435 MsG0380017461.01.T01:intron 45.0%
!!! TCCCTCATGCGAGAGTATTT+TGG + Chr3:96543415-96543434 MsG0380017461.01.T01:intron 45.0%
ACCACTCTTACCCCACTATG+TGG - Chr3:96542082-96542101 None:intergenic 50.0%
ACTATGTGGGGTCAGCTACA+TGG - Chr3:96542068-96542087 None:intergenic 50.0%
ACTCTCGCATGAGGGAAAGT+GGG - Chr3:96543411-96543430 None:intergenic 50.0%
AGCGGTAGCTGCCTATATGT+GGG - Chr3:96544937-96544956 None:intergenic 50.0%
ATGTAGCTGACCCCACATAG+TGG + Chr3:96542067-96542086 MsG0380017461.01.T01:intron 50.0%
CACTCTTACCCCACTATGTG+GGG - Chr3:96542080-96542099 None:intergenic 50.0%
CAGTCAAAGCGGATCGATGA+TGG + Chr3:96547273-96547292 MsG0380017461.01.T01:CDS 50.0%
CCACTCTTACCCCACTATGT+GGG - Chr3:96542081-96542100 None:intergenic 50.0%
CGATTTCTGATTGGCACGGT+AGG - Chr3:96541612-96541631 None:intergenic 50.0%
GAATTCCTGGCCAACTGATC+AGG + Chr3:96543544-96543563 MsG0380017461.01.T01:intron 50.0%
GACATTGGAAGGAGGAGCTT+TGG + Chr3:96542987-96543006 MsG0380017461.01.T01:intron 50.0%
GATAGATATGCCGCAGCAGT+CGG + Chr3:96546138-96546157 MsG0380017461.01.T01:CDS 50.0%
GCTTGTGCAGGTATGAACAC+CGG + Chr3:96542223-96542242 MsG0380017461.01.T01:intron 50.0%
GGGACAAAAGGAGAAGCAAG+AGG - Chr3:96544852-96544871 None:intergenic 50.0%
GTCGATGTTTCCCTGTACAG+TGG - Chr3:96542420-96542439 None:intergenic 50.0%
TACTCTCGCATGAGGGAAAG+TGG - Chr3:96543412-96543431 None:intergenic 50.0%
TCCAATCGGCCAAAGGATTG+GGG + Chr3:96547489-96547508 MsG0380017461.01.T01:three_prime_UTR 50.0%
TGGCCAGGAAAAATGCTCCA+AGG + Chr3:96547176-96547195 MsG0380017461.01.T01:intron 50.0%
TGGTGGAAACTAGGCTTAGG+CGG + Chr3:96541857-96541876 MsG0380017461.01.T01:intron 50.0%
TGTAGCTGACCCCACATAGT+GGG + Chr3:96542068-96542087 MsG0380017461.01.T01:intron 50.0%
TGTATTGGAGGAGGGTTTGG+GGG + Chr3:96543064-96543083 MsG0380017461.01.T01:intron 50.0%
! ATTGGAGTGCCCCAATCCTT+TGG - Chr3:96547501-96547520 None:intergenic 50.0%
! ATTGGATGAAGGCACGTGAG+TGG + Chr3:96542868-96542887 MsG0380017461.01.T01:intron 50.0%
! GAGGCCTTTAGTAGCACTGA+TGG + Chr3:96544022-96544041 MsG0380017461.01.T01:CDS 50.0%
! GCGGAGTTTCGCGTATTTTG+AGG - Chr3:96544907-96544926 None:intergenic 50.0%
! GCTTTGTTGCGAGTTTGGAG+GGG + Chr3:96542909-96542928 MsG0380017461.01.T01:intron 50.0%
! TTATATCGTCGCCGCTTTGG+TGG + Chr3:96546219-96546238 MsG0380017461.01.T01:intron 50.0%
!! AGGCTTTGTTGCGAGTTTGG+AGG + Chr3:96542907-96542926 MsG0380017461.01.T01:intron 50.0%
!! GAGCATACAGTTCTGAGAGC+CGG - Chr3:96542245-96542264 None:intergenic 50.0%
!! GGCTTTGTTGCGAGTTTGGA+GGG + Chr3:96542908-96542927 MsG0380017461.01.T01:intron 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG - Chr3:96543379-96543398 None:intergenic 50.0%
CAGCGGTAGCTGCCTATATG+TGG - Chr3:96544938-96544957 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG - Chr3:96543154-96543173 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + Chr3:96543151-96543170 MsG0380017461.01.T01:intron 55.0%
CGCTATAGAAGTGGTAGCCG+CGG - Chr3:96544320-96544339 None:intergenic 55.0%
CTGGCCAACTGATCAGGGTA+GGG + Chr3:96543550-96543569 MsG0380017461.01.T01:intron 55.0%
GAGGGGAAGGAAAGGCTTTG+GGG - Chr3:96543355-96543374 None:intergenic 55.0%
GAGTTTGGAGGGGAAGGGAA+GGG + Chr3:96542919-96542938 MsG0380017461.01.T01:intron 55.0%
GCACAGTGCCAATCTTGCAG+AGG + Chr3:96546531-96546550 MsG0380017461.01.T01:intron 55.0%
GGAGGGGAAGGAAAGGCTTT+GGG - Chr3:96543356-96543375 None:intergenic 55.0%
GGATCCCTACCCTGATCAGT+TGG - Chr3:96543557-96543576 None:intergenic 55.0%
GGGTGCATGGCTGAATGCTA+TGG - Chr3:96545585-96545604 None:intergenic 55.0%
GTAGCTGACCCCACATAGTG+GGG + Chr3:96542069-96542088 MsG0380017461.01.T01:intron 55.0%
GTTGCGAGTTTGGAGGGGAA+GGG + Chr3:96542914-96542933 MsG0380017461.01.T01:intron 55.0%
GTTTGGGAGTTTGGAGGGGA+GGG - Chr3:96543373-96543392 None:intergenic 55.0%
TGTTGCGAGTTTGGAGGGGA+AGG + Chr3:96542913-96542932 MsG0380017461.01.T01:intron 55.0%
TGTTTGGGAGTTTGGAGGGG+AGG - Chr3:96543374-96543393 None:intergenic 55.0%
TTTGGGAGTTTGGAGGGGAG+GGG - Chr3:96543372-96543391 None:intergenic 55.0%
! AGGGGAAGGAAAGGCTTTGG+GGG - Chr3:96543354-96543373 None:intergenic 55.0%
! CCCACATAGTGGGGTAAGAG+TGG + Chr3:96542078-96542097 MsG0380017461.01.T01:intron 55.0%
! CTTATGCTCACCGACTGCTG+CGG - Chr3:96546151-96546170 None:intergenic 55.0%
! GGAGTCGATGATGGCTGACT+TGG + Chr3:96545517-96545536 MsG0380017461.01.T01:intron 55.0%
!! ACGGCTTGCTGTAGATCGTC+TGG - Chr3:96546993-96547012 None:intergenic 55.0%
!! AGAGAAGAGAGGCACCGAGA+GGG - Chr3:96542631-96542650 None:intergenic 55.0%
!! GTCGATGATGGCTGACTTGG+TGG + Chr3:96545520-96545539 MsG0380017461.01.T01:intron 55.0%
!! TAGAGAAGAGAGGCACCGAG+AGG - Chr3:96542632-96542651 None:intergenic 55.0%
CAAGGTCGGGGTTCAAACCC+TGG + Chr3:96543196-96543215 MsG0380017461.01.T01:intron 60.0%
CCTACCCTGATCAGTTGGCC+AGG - Chr3:96543552-96543571 None:intergenic 60.0%
CCTGGCCAACTGATCAGGGT+AGG + Chr3:96543549-96543568 MsG0380017461.01.T01:intron 60.0%
CGAGTTTGGAGGGGAAGGGA+AGG + Chr3:96542918-96542937 MsG0380017461.01.T01:intron 60.0%
GAGGGTTTGGGGGTTTGGGA+GGG + Chr3:96543074-96543093 MsG0380017461.01.T01:intron 60.0%
GCCCCAATCCTTTGGCCGAT+TGG - Chr3:96547493-96547512 None:intergenic 60.0%
GGAGGAGGGTTTGGGGGTTT+GGG + Chr3:96543070-96543089 MsG0380017461.01.T01:intron 60.0%
GGGAGGGGAAGGAAAGGCTT+TGG - Chr3:96543357-96543376 None:intergenic 60.0%
GGGGAAGGGAAGGGAAGGAA+AGG + Chr3:96542928-96542947 MsG0380017461.01.T01:intron 60.0%
TGGAGGAGGGTTTGGGGGTT+TGG + Chr3:96543069-96543088 MsG0380017461.01.T01:intron 60.0%
TTGGAGGGGAAGGGAAGGGA+AGG + Chr3:96542923-96542942 MsG0380017461.01.T01:intron 60.0%
TTGGAGGGGAGGGGAAGGAA+AGG - Chr3:96543363-96543382 None:intergenic 60.0%
!! GAAACTAGAAGGCGCCGCCT+TGG + Chr3:96544594-96544613 MsG0380017461.01.T01:intron 60.0%
GGAGGGTTTGGGGGTTTGGG+AGG + Chr3:96543073-96543092 MsG0380017461.01.T01:intron 65.0%
GGAGTTTGGAGGGGAGGGGA+AGG - Chr3:96543368-96543387 None:intergenic 65.0%
!! ACTAGAAGGCGCCGCCTTGG+TGG + Chr3:96544597-96544616 MsG0380017461.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 96540932 96547616 96540932 ID=MsG0380017461.01;Name=MsG0380017461.01
Chr3 mRNA 96540932 96547616 96540932 ID=MsG0380017461.01.T01;Parent=MsG0380017461.01;Name=MsG0380017461.01.T01;_AED=0.42;_eAED=0.42;_QI=79|0.62|0.66|1|0.87|0.77|9|324|283
Chr3 exon 96540932 96540990 96540932 ID=MsG0380017461.01.T01:exon:13073;Parent=MsG0380017461.01.T01
Chr3 exon 96541026 96541195 96541026 ID=MsG0380017461.01.T01:exon:13074;Parent=MsG0380017461.01.T01
Chr3 exon 96541276 96541449 96541276 ID=MsG0380017461.01.T01:exon:13075;Parent=MsG0380017461.01.T01
Chr3 exon 96541556 96541588 96541556 ID=MsG0380017461.01.T01:exon:13076;Parent=MsG0380017461.01.T01
Chr3 exon 96541686 96541801 96541686 ID=MsG0380017461.01.T01:exon:13077;Parent=MsG0380017461.01.T01
Chr3 exon 96542428 96542533 96542428 ID=MsG0380017461.01.T01:exon:13078;Parent=MsG0380017461.01.T01
Chr3 exon 96544016 96544096 96544016 ID=MsG0380017461.01.T01:exon:13079;Parent=MsG0380017461.01.T01
Chr3 exon 96546078 96546159 96546078 ID=MsG0380017461.01.T01:exon:13080;Parent=MsG0380017461.01.T01
Chr3 exon 96547183 96547616 96547183 ID=MsG0380017461.01.T01:exon:13081;Parent=MsG0380017461.01.T01
Chr3 five_prime_UTR 96540932 96540990 96540932 ID=MsG0380017461.01.T01:five_prime_utr;Parent=MsG0380017461.01.T01
Chr3 five_prime_UTR 96541026 96541045 96541026 ID=MsG0380017461.01.T01:five_prime_utr;Parent=MsG0380017461.01.T01
Chr3 CDS 96541046 96541195 96541046 ID=MsG0380017461.01.T01:cds;Parent=MsG0380017461.01.T01
Chr3 CDS 96541276 96541449 96541276 ID=MsG0380017461.01.T01:cds;Parent=MsG0380017461.01.T01
Chr3 CDS 96541556 96541588 96541556 ID=MsG0380017461.01.T01:cds;Parent=MsG0380017461.01.T01
Chr3 CDS 96541686 96541801 96541686 ID=MsG0380017461.01.T01:cds;Parent=MsG0380017461.01.T01
Chr3 CDS 96542428 96542533 96542428 ID=MsG0380017461.01.T01:cds;Parent=MsG0380017461.01.T01
Chr3 CDS 96544016 96544096 96544016 ID=MsG0380017461.01.T01:cds;Parent=MsG0380017461.01.T01
Chr3 CDS 96546078 96546159 96546078 ID=MsG0380017461.01.T01:cds;Parent=MsG0380017461.01.T01
Chr3 CDS 96547183 96547292 96547183 ID=MsG0380017461.01.T01:cds;Parent=MsG0380017461.01.T01
Chr3 three_prime_UTR 96547293 96547616 96547293 ID=MsG0380017461.01.T01:three_prime_utr;Parent=MsG0380017461.01.T01
Gene Sequence

>MsG0380017461.01.T01

ATGAGTGGCAATTTGGATGAACTGGTTTGTGAGATTGATTGCCGGAAGATGAATGTTGTGGAGCAGTTAGATGAATTAAGAGAGAGAATCAATAAGGAAGGTGTTGATTCTTCTGTGCACAAGTTGTACAATTCAATCAAGTCTTTGAAGGATCTTGAAAGGAAGGAAAATCAGTTTCTGTTCAAACGCGATTCTAAGCATTCAGAACTTCAATCTGAGATTAATGAATTAGAGAGGAAAATAGCAAATGACTGTGGTGATGATAGCAAGAGTCTTCATCATTCTCTTAGCGAATCACTTGGAAGAGTTGATTTGATGAAAAAGGAACTTGCTGCTAGACTAAGGGATGTAGTAGCAATTAATAGAATGAAAGCATGTCCCGTATTATCAATTACTTTTATCTATCCCTACAAGTGTCTAGAATATTTGTATTCACGTTGCGTTGGATATGTGGTAAGACTATATGAGATAAGGGAAACATCGACAGACTCGCAAATACTATTCTACCTACAATGCTCTTTTGGAAATAAAAGAATTGATGTAAAGGAAACATCTTTATTGAATTCGATCATTTCACAGTTTCAAGAGGCCTTTAGTAGCACTGATGGTCGTATAAAGCTTGTTCATTCCATGGAAGGAATTGTCAAGGGAAGTGAACAGAAACTACGAAAGGTTCAACTAGGGCTTCAAGAAGAAGAGACAAATCTTAATGATCTTAAGGATAGATATGCCGCAGCAGTCGGAAAAATGCTCCAAGGAGAAGTTACGGTGTCAAAGTTCCAAATGAAAATTGCTGACGTCTCTGTGGTTGTGTTGCATGAAATATTTGCATCAGTCAAAGCGGATCGATGA

Protein sequence

>MsG0380017461.01.T01

MSGNLDELVCEIDCRKMNVVEQLDELRERINKEGVDSSVHKLYNSIKSLKDLERKENQFLFKRDSKHSELQSEINELERKIANDCGDDSKSLHHSLSESLGRVDLMKKELAARLRDVVAINRMKACPVLSITFIYPYKCLEYLYSRCVGYVVRLYEIRETSTDSQILFYLQCSFGNKRIDVKETSLLNSIISQFQEAFSSTDGRIKLVHSMEGIVKGSEQKLRKVQLGLQEEETNLNDLKDRYAAAVGKMLQGEVTVSKFQMKIADVSVVVLHEIFASVKADR*