AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023427.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023427.01.T01 MTR_8g092090 54.264 258 68 5 74 296 4 246 3.56e-78 239
MsG0480023427.01.T01 MTR_4g107460 52.852 263 88 5 74 300 4 266 2.71e-76 237
MsG0480023427.01.T01 MTR_8g095240 48.872 266 91 2 78 298 3 268 6.86e-67 216
MsG0480023427.01.T01 MTR_8g095240 48.881 268 92 6 78 300 72 339 1.20e-66 215
MsG0480023427.01.T01 MTR_8g092410 46.939 294 87 5 67 300 16 300 1.92e-65 211
MsG0480023427.01.T01 MTR_8g080860 44.531 256 108 3 78 299 19 274 3.79e-57 186
MsG0480023427.01.T01 MTR_8g080860 44.531 256 108 3 78 299 15 270 5.60e-57 186
MsG0480023427.01.T01 MTR_2g078470 41.176 255 114 4 79 298 79 332 4.35e-50 171
MsG0480023427.01.T01 MTR_2g078470 39.924 263 119 5 72 298 4 263 8.19e-43 151
MsG0480023427.01.T01 MTR_2g078470 41.509 159 58 3 79 214 217 363 4.97e-23 98.2
MsG0480023427.01.T01 MTR_2g078470 30.213 235 106 2 79 267 148 370 5.61e-22 95.5
MsG0480023427.01.T01 MTR_6g043150 39.483 271 106 3 74 298 5 263 3.40e-48 164
MsG0480023427.01.T01 MTR_6g043150 39.113 248 117 3 79 292 79 326 2.73e-42 149
MsG0480023427.01.T01 MTR_6g043150 37.968 187 81 3 78 241 147 321 3.74e-25 103
MsG0480023427.01.T01 MTR_6g043150 36.066 122 55 2 200 298 4 125 2.21e-13 70.1
MsG0480023427.01.T01 MTR_8g088930 46.073 191 91 1 78 268 12 190 9.52e-45 162
MsG0480023427.01.T01 MTR_8g088930 41.111 90 53 0 78 167 104 193 1.32e-13 72.0
MsG0480023427.01.T01 MTR_8g088930 29.012 162 103 2 125 286 13 162 8.36e-13 69.3
MsG0480023427.01.T01 MTR_8g088930 58.333 48 20 0 251 298 12 59 4.01e-11 64.3
MsG0480023427.01.T01 MTR_8g088930 46.073 191 91 1 78 268 12 190 9.79e-45 162
MsG0480023427.01.T01 MTR_8g088930 41.111 90 53 0 78 167 104 193 1.31e-13 72.0
MsG0480023427.01.T01 MTR_8g088930 29.012 162 103 2 125 286 13 162 8.60e-13 69.3
MsG0480023427.01.T01 MTR_8g088930 58.333 48 20 0 251 298 12 59 4.05e-11 64.3
MsG0480023427.01.T01 MTR_8g088930 46.073 191 91 1 78 268 12 190 1.47e-44 162
MsG0480023427.01.T01 MTR_8g088930 41.111 90 53 0 78 167 104 193 1.26e-13 72.0
MsG0480023427.01.T01 MTR_8g088930 29.012 162 103 2 125 286 13 162 9.14e-13 69.3
MsG0480023427.01.T01 MTR_8g088930 58.333 48 20 0 251 298 12 59 3.78e-11 64.3
MsG0480023427.01.T01 MTR_8g088930 46.073 191 91 1 78 268 12 190 1.93e-44 162
MsG0480023427.01.T01 MTR_8g088930 41.111 90 53 0 78 167 104 193 1.45e-13 71.6
MsG0480023427.01.T01 MTR_8g088930 29.012 162 103 2 125 286 13 162 1.12e-12 68.9
MsG0480023427.01.T01 MTR_8g088930 58.333 48 20 0 251 298 12 59 3.99e-11 64.3
MsG0480023427.01.T01 MTR_5g010840 39.910 223 114 2 76 298 109 311 7.24e-44 155
MsG0480023427.01.T01 MTR_5g010840 58.442 77 32 0 79 155 265 341 1.78e-21 94.4
MsG0480023427.01.T01 MTR_8g080340 50.746 134 54 2 166 299 37 158 6.78e-35 125
MsG0480023427.01.T01 MTR_8g080340 39.674 184 67 5 72 248 14 160 1.27e-32 119
MsG0480023427.01.T01 MTR_8g080350 38.208 212 101 3 78 261 125 334 2.22e-34 129
MsG0480023427.01.T01 MTR_8g080350 56.180 89 37 1 210 298 86 172 1.27e-24 103
MsG0480023427.01.T01 MTR_8g080350 34.375 192 89 4 106 297 86 240 1.17e-21 94.7
MsG0480023427.01.T01 MTR_8g080350 24.621 264 126 5 97 299 98 349 2.84e-12 67.4
MsG0480023427.01.T01 MTR_8g039100 36.264 182 102 3 79 259 53 221 6.27e-28 114
MsG0480023427.01.T01 MTR_8g039100 32.386 176 107 2 123 298 51 214 1.19e-16 81.3
MsG0480023427.01.T01 MTR_8g039100 41.237 97 57 0 78 174 144 240 2.49e-13 71.2
MsG0480023427.01.T01 MTR_1g062740 35.263 190 111 1 79 268 51 228 8.86e-27 111
MsG0480023427.01.T01 MTR_1g062740 43.333 90 51 0 78 167 142 231 1.34e-14 75.1
MsG0480023427.01.T01 MTR_1g062740 28.409 176 114 2 122 297 48 211 1.76e-11 65.5
MsG0480023427.01.T01 MTR_3g073100 34.272 213 113 4 77 283 55 246 8.59e-26 108
MsG0480023427.01.T01 MTR_3g073100 27.684 177 109 3 126 298 58 219 2.70e-13 70.9
MsG0480023427.01.T01 MTR_8g080310 37.349 166 92 1 73 238 4 157 2.34e-25 99.8
MsG0480023427.01.T01 MTR_8g080310 37.278 169 94 2 116 284 1 157 3.74e-24 96.7
MsG0480023427.01.T01 MTR_8g080310 33.043 115 77 0 62 176 39 153 2.65e-12 64.3
MsG0480023427.01.T01 MTR_1g050740 31.273 275 164 6 20 289 9 263 1.24e-24 104
MsG0480023427.01.T01 MTR_1g050740 32.386 176 105 3 123 297 59 221 5.68e-16 79.0
MsG0480023427.01.T01 MTR_7g089950 32.245 245 147 4 22 261 11 241 1.21e-23 102
MsG0480023427.01.T01 MTR_7g089950 29.213 178 108 2 123 297 69 231 6.09e-13 70.1
MsG0480023427.01.T01 MTR_8g007500 30.417 240 142 5 28 266 157 372 1.72e-23 100
MsG0480023427.01.T01 MTR_5g459450 37.126 167 93 2 79 245 69 223 5.06e-23 100
MsG0480023427.01.T01 MTR_5g459450 29.480 173 110 2 123 295 67 227 3.19e-14 73.9
MsG0480023427.01.T01 MTR_3g072650 32.979 188 104 4 77 259 183 353 1.07e-22 98.2
MsG0480023427.01.T01 MTR_3g072650 30.220 182 113 3 119 300 179 346 1.49e-16 80.1
MsG0480023427.01.T01 MTR_7g451440 33.158 190 113 3 78 266 191 367 1.28e-22 98.2
MsG0480023427.01.T01 MTR_7g451440 28.713 202 105 3 100 300 190 353 3.40e-18 85.1
MsG0480023427.01.T01 MTR_7g451440 34.911 169 98 2 75 243 211 367 3.42e-17 82.4
MsG0480023427.01.T01 MTR_3g072650 32.979 188 104 4 77 259 183 353 1.45e-22 97.4
MsG0480023427.01.T01 MTR_3g072650 30.220 182 113 3 119 300 179 346 1.47e-16 80.1
MsG0480023427.01.T01 MTR_8g095170 34.225 187 110 3 79 264 30 204 1.69e-22 98.2
MsG0480023427.01.T01 MTR_8g095170 30.286 175 109 3 125 298 30 192 3.42e-14 73.6
MsG0480023427.01.T01 MTR_8g095170 34.225 187 110 3 79 264 30 204 2.39e-22 97.8
MsG0480023427.01.T01 MTR_8g095170 30.286 175 109 3 125 298 30 192 5.33e-14 73.2
MsG0480023427.01.T01 MTR_3g097260 36.757 185 105 2 77 261 53 225 2.47e-22 97.8
MsG0480023427.01.T01 MTR_3g097260 31.792 173 106 2 125 297 55 215 1.29e-12 68.9
MsG0480023427.01.T01 MTR_3g014650 30.570 193 86 3 79 259 89 245 1.70e-21 95.5
MsG0480023427.01.T01 MTR_3g014650 31.973 147 88 2 78 224 122 256 4.34e-12 67.4
MsG0480023427.01.T01 MTR_3g014650 37.778 90 56 0 78 167 168 257 3.43e-11 64.7
MsG0480023427.01.T01 MTR_3g023310 42.308 130 50 1 139 268 10 114 2.47e-21 89.7
MsG0480023427.01.T01 MTR_3g023310 39.716 141 60 3 94 234 11 126 2.07e-17 79.0
MsG0480023427.01.T01 MTR_3g023310 36.719 128 68 2 78 195 18 142 2.63e-15 73.2
MsG0480023427.01.T01 MTR_3g023310 34.234 111 63 1 198 298 11 121 7.34e-11 60.8
MsG0480023427.01.T01 MTR_4g099180 31.156 199 115 4 78 271 171 352 2.81e-21 94.0
MsG0480023427.01.T01 MTR_4g099180 27.363 201 109 2 100 300 170 333 1.07e-16 80.5
MsG0480023427.01.T01 MTR_5g058920 32.632 190 116 2 74 263 192 369 3.83e-21 93.6
MsG0480023427.01.T01 MTR_5g058920 27.570 214 118 2 87 300 182 358 7.32e-16 78.2
MsG0480023427.01.T01 MTR_3g023315 74.419 43 11 0 83 125 12 54 8.55e-16 71.6
MsG0480023427.01.T01 MTR_4g099180 33.636 110 71 1 199 308 188 295 3.48e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023427.01.T01 AT1G60890 44.792 192 94 2 78 269 22 201 2.49e-38 144
MsG0480023427.01.T01 AT1G60890 29.091 165 103 2 123 286 21 172 2.59e-13 71.2
MsG0480023427.01.T01 AT1G60890 43.750 192 96 1 78 269 10 189 2.96e-38 144
MsG0480023427.01.T01 AT1G60890 29.091 165 103 2 123 286 9 160 2.90e-13 70.9
MsG0480023427.01.T01 AT1G10900 43.503 177 88 2 78 254 10 174 1.12e-33 131
MsG0480023427.01.T01 AT1G10900 43.503 177 88 2 78 254 10 174 1.12e-33 131
MsG0480023427.01.T01 AT1G10900 43.503 177 88 2 78 254 10 174 1.12e-33 131
MsG0480023427.01.T01 AT1G21980 35.912 181 104 1 79 259 76 244 4.03e-27 112
MsG0480023427.01.T01 AT1G21980 32.184 174 106 2 125 298 76 237 1.56e-17 84.0
MsG0480023427.01.T01 AT1G21980 43.590 78 44 0 78 155 167 244 1.96e-13 71.6
MsG0480023427.01.T01 AT3G07960 33.803 213 122 5 80 289 28 224 3.51e-25 106
MsG0480023427.01.T01 AT3G07960 32.386 176 101 3 126 298 28 188 1.64e-17 83.6
MsG0480023427.01.T01 AT3G07960 40.000 90 54 0 78 167 118 207 1.47e-12 68.6
MsG0480023427.01.T01 AT3G07960 30.573 157 97 2 68 224 62 206 3.32e-11 64.7
MsG0480023427.01.T01 AT1G77740 35.165 182 106 1 79 260 77 246 3.61e-25 106
MsG0480023427.01.T01 AT1G77740 30.460 174 109 2 125 298 77 238 3.97e-15 76.6
MsG0480023427.01.T01 AT1G77740 41.026 78 46 0 78 155 168 245 1.66e-12 68.6
MsG0480023427.01.T01 AT1G77740 35.165 182 106 1 79 260 77 246 3.61e-25 106
MsG0480023427.01.T01 AT1G77740 30.460 174 109 2 125 298 77 238 3.97e-15 76.6
MsG0480023427.01.T01 AT1G77740 41.026 78 46 0 78 155 168 245 1.66e-12 68.6
MsG0480023427.01.T01 AT3G07960 33.645 214 123 5 79 289 27 224 4.71e-25 105
MsG0480023427.01.T01 AT3G07960 32.203 177 102 3 125 298 27 188 1.88e-17 83.6
MsG0480023427.01.T01 AT3G07960 40.000 90 54 0 78 167 118 207 1.63e-12 68.6
MsG0480023427.01.T01 AT3G07960 30.573 157 97 2 68 224 62 206 3.83e-11 64.3
MsG0480023427.01.T01 AT3G07960 33.645 214 123 5 79 289 27 224 4.71e-25 105
MsG0480023427.01.T01 AT3G07960 32.203 177 102 3 125 298 27 188 1.88e-17 83.6
MsG0480023427.01.T01 AT3G07960 40.000 90 54 0 78 167 118 207 1.63e-12 68.6
MsG0480023427.01.T01 AT3G07960 30.573 157 97 2 68 224 62 206 3.83e-11 64.3
MsG0480023427.01.T01 AT2G41210 33.981 206 101 3 79 284 70 240 6.42e-25 105
MsG0480023427.01.T01 AT2G41210 41.111 90 53 0 78 167 161 250 5.66e-13 70.1
MsG0480023427.01.T01 AT2G41210 31.138 167 94 4 78 235 115 269 1.36e-12 68.9
MsG0480023427.01.T01 AT3G07960 33.645 214 123 5 79 289 27 224 7.74e-25 105
MsG0480023427.01.T01 AT3G07960 32.203 177 102 3 125 298 27 188 3.10e-17 82.8
MsG0480023427.01.T01 AT3G07960 40.000 90 54 0 78 167 118 207 1.98e-12 68.6
MsG0480023427.01.T01 AT3G07960 30.573 157 97 2 68 224 62 206 6.76e-11 63.5
MsG0480023427.01.T01 AT3G09920 32.990 194 117 2 66 259 41 221 1.22e-23 102
MsG0480023427.01.T01 AT3G09920 41.584 101 59 0 78 178 144 244 1.89e-14 74.7
MsG0480023427.01.T01 AT3G09920 32.990 194 117 2 66 259 41 221 1.22e-23 102
MsG0480023427.01.T01 AT3G09920 41.584 101 59 0 78 178 144 244 1.89e-14 74.7
MsG0480023427.01.T01 AT3G09920 32.990 194 117 2 66 259 41 221 1.22e-23 102
MsG0480023427.01.T01 AT3G09920 41.584 101 59 0 78 178 144 244 1.89e-14 74.7
MsG0480023427.01.T01 AT3G09920 32.990 194 117 2 66 259 41 221 1.22e-23 102
MsG0480023427.01.T01 AT3G09920 41.584 101 59 0 78 178 144 244 1.89e-14 74.7
MsG0480023427.01.T01 AT3G56960 31.797 217 112 4 68 284 62 242 2.14e-23 101
MsG0480023427.01.T01 AT3G56960 29.379 177 111 3 123 298 70 233 3.25e-14 73.9
MsG0480023427.01.T01 AT3G56960 31.797 217 112 4 68 284 62 242 2.14e-23 101
MsG0480023427.01.T01 AT3G56960 29.379 177 111 3 123 298 70 233 3.25e-14 73.9
MsG0480023427.01.T01 AT2G26420 32.110 218 90 3 80 297 54 213 4.92e-23 100
MsG0480023427.01.T01 AT2G26420 28.977 176 90 1 123 298 51 191 3.25e-12 67.8
MsG0480023427.01.T01 AT2G26420 40.449 89 52 1 78 165 144 232 1.40e-11 65.9
MsG0480023427.01.T01 AT2G26420 32.110 218 90 3 80 297 54 213 6.65e-23 99.8
MsG0480023427.01.T01 AT2G26420 28.977 176 90 1 123 298 51 191 4.35e-12 67.4
MsG0480023427.01.T01 AT2G26420 40.449 89 52 1 78 165 144 232 1.58e-11 65.5
MsG0480023427.01.T01 AT2G26420 32.110 218 90 3 80 297 54 213 6.65e-23 99.8
MsG0480023427.01.T01 AT2G26420 28.977 176 90 1 123 298 51 191 4.35e-12 67.4
MsG0480023427.01.T01 AT2G26420 40.449 89 52 1 78 165 144 232 1.58e-11 65.5
MsG0480023427.01.T01 AT1G77660 33.005 203 121 4 59 259 157 346 8.06e-23 98.6
MsG0480023427.01.T01 AT1G77660 29.348 184 95 1 101 284 177 325 9.76e-15 74.7
MsG0480023427.01.T01 AT1G21920 30.472 233 147 3 36 266 130 349 2.91e-22 96.3
MsG0480023427.01.T01 AT1G21920 27.861 201 106 3 101 300 173 335 1.43e-16 80.1
MsG0480023427.01.T01 AT1G21920 30.472 233 147 3 36 266 130 349 4.82e-22 96.3
MsG0480023427.01.T01 AT1G21920 27.861 201 106 3 101 300 173 335 1.52e-16 80.1
MsG0480023427.01.T01 AT4G17080 32.105 190 115 3 78 266 256 432 1.42e-21 95.5
MsG0480023427.01.T01 AT4G17080 28.500 200 106 2 101 300 256 418 5.59e-17 82.0
MsG0480023427.01.T01 AT2G35170 31.401 207 122 4 78 280 225 415 8.78e-21 92.8
MsG0480023427.01.T01 AT2G35170 29.082 196 100 3 106 300 230 387 8.78e-17 81.3

Find 101 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGTTGCCGGAGTTGATTTA+TGG 0.180495 4:+85077718 None:intergenic
TACCTCCATCCTTCCAAGTT+TGG 0.255059 4:+85075697 None:intergenic
ACCTCCATCCTTCCAAGTTT+GGG 0.269330 4:+85075698 None:intergenic
TTCTTCACTTCGTCGGTTGC+CGG 0.302924 4:+85077705 None:intergenic
TTCAAATAAAGCTGAGTCTA+AGG 0.307919 4:-85075097 MsG0480023427.01.T01:CDS
GGAGGTAGCTACACTGGAAT+TGG 0.325899 4:-85075681 MsG0480023427.01.T01:CDS
GGGATGTCTACATCGGAAAT+TGG 0.328664 4:-85075403 MsG0480023427.01.T01:CDS
CAGAGAAAGGACTGATGATA+TGG 0.336491 4:-85075157 MsG0480023427.01.T01:CDS
TACGAGGGTGATTGGGTTGA+TGG 0.337164 4:-85075810 MsG0480023427.01.T01:CDS
CCTTGTCGCCGGTGGATTTA+CGG 0.350069 4:+85077772 None:intergenic
GCTAATGGGGATGTCGATAT+TGG 0.363580 4:-85075272 MsG0480023427.01.T01:CDS
AATGGACTTGTACATGGATA+TGG 0.366109 4:-85075586 MsG0480023427.01.T01:CDS
AATGGACTTAGACATGGATT+TGG 0.376853 4:-85075446 MsG0480023427.01.T01:intron
GAGTTTATAGATTTGCAAAT+GGG 0.384860 4:-85075424 MsG0480023427.01.T01:CDS
GATCAATATACGAGGGTGAT+TGG 0.385479 4:-85075818 MsG0480023427.01.T01:CDS
GAACAATATACGAGGGTGAT+TGG 0.386941 4:-85075196 MsG0480023427.01.T01:CDS
GGTTGCCGGAGTTGATTTAT+GGG 0.389181 4:+85077719 None:intergenic
AGTTGATTTATGGGTGGCTT+TGG 0.393637 4:+85077728 None:intergenic
AGAAAATACACATGCTCAAA+TGG 0.401828 4:-85075218 MsG0480023427.01.T01:CDS
AAAGACAACATGGATGGAAC+AGG 0.409911 4:-85075377 MsG0480023427.01.T01:CDS
AGTGTTATAGATATGCTAAT+GGG 0.416020 4:-85075286 MsG0480023427.01.T01:CDS
GGAAAAGGGGACTGCGACTT+GGG 0.417679 4:-85075640 MsG0480023427.01.T01:CDS
TTCGATGGTTGTTGGTCAAA+TGG 0.420416 4:-85075326 MsG0480023427.01.T01:CDS
GGGACTGCGACTTGGGCTAA+TGG 0.422911 4:-85075633 MsG0480023427.01.T01:CDS
CGGAAAAGGGGACTGCGACT+TGG 0.423339 4:-85075641 MsG0480023427.01.T01:CDS
TTGGTGGCCAGCAGCTTATG+TGG 0.434386 4:+85077747 None:intergenic
TTTGATGGTTGTTGGTCAAA+TGG 0.435987 4:-85075604 MsG0480023427.01.T01:CDS
GGAGTTTATAGATTTGCAAA+TGG 0.437498 4:-85075425 MsG0480023427.01.T01:CDS
TGATTTATGGGTGGCTTTGG+TGG 0.443228 4:+85077731 None:intergenic
GGATTTACGGTCAGTTTGCT+TGG 0.448178 4:+85077785 None:intergenic
GAGTGTTATAGATATGCTAA+TGG 0.449033 4:-85075287 MsG0480023427.01.T01:CDS
AACAATATACGAGGGTGATT+GGG 0.451603 4:-85075195 MsG0480023427.01.T01:CDS
ATGGCAATGGCACCCAAACT+TGG 0.453922 4:-85075710 MsG0480023427.01.T01:CDS
AAAGCTGAGTCTAAGGCATC+TGG 0.456725 4:-85075090 MsG0480023427.01.T01:CDS
ATGTCGATATTGGTAACTTC+AGG 0.462222 4:-85075262 MsG0480023427.01.T01:CDS
AAATGGACTTATACATGGAT+TGG 0.464772 4:-85075309 MsG0480023427.01.T01:CDS
GGAGTTTATAGATCTGCAAA+TGG 0.464834 4:-85075565 MsG0480023427.01.T01:CDS
ATCAATATACGAGGGTGATT+GGG 0.465727 4:-85075817 MsG0480023427.01.T01:CDS
AAAAGTCGGAGGAGGAGAAA+AGG 0.466786 4:-85076318 MsG0480023427.01.T01:CDS
GTGTGGCTTCTTCACTTCGT+CGG 0.472255 4:+85077698 None:intergenic
TGGAACAGGGATTATGAGTT+GGG 0.472804 4:-85075363 MsG0480023427.01.T01:CDS
ATTTGAAATCTGCAATGAAG+TGG 0.473202 4:+85075113 None:intergenic
AGAAGTTTACCAGATTGCTT+AGG 0.473638 4:+85076271 None:intergenic
TGGTCAAATGGACTTATACA+TGG 0.474958 4:-85075314 MsG0480023427.01.T01:CDS
GAGTTTATAGATCTGCAAAT+GGG 0.475929 4:-85075564 MsG0480023427.01.T01:CDS
GAGGTAGCTACACTGGAATT+GGG 0.491499 4:-85075680 MsG0480023427.01.T01:CDS
TGCAATGAAGTGGAACCATC+AGG 0.492197 4:+85075123 None:intergenic
CAAGGCTCCACATAAGCTGC+TGG 0.492954 4:-85077754 MsG0480023427.01.T01:CDS
GAACGCGGACCTAAGCAATC+TGG 0.496038 4:-85076280 MsG0480023427.01.T01:CDS
GGACTGCTCATACAATCATC+AGG 0.504986 4:-85075771 MsG0480023427.01.T01:CDS
AAACTGTAGGTTTAAAGAGA+TGG 0.508100 4:-85075925 MsG0480023427.01.T01:intron
TGGTCAAATGGACTTGTACA+TGG 0.509652 4:-85075592 MsG0480023427.01.T01:CDS
GCGATGTCTTCGATGGTTGT+TGG 0.515994 4:-85075334 MsG0480023427.01.T01:CDS
GGAGGAGGAGAAAAGGAGAT+CGG 0.520425 4:-85076311 MsG0480023427.01.T01:CDS
TGGGTTGATGGAGAGATGAC+AGG 0.520799 4:-85075798 MsG0480023427.01.T01:CDS
GAGGAGGAGAAAAGGAGATC+GGG 0.525057 4:-85076310 MsG0480023427.01.T01:CDS
GGGATTATGAGTTGGGCTAC+CGG 0.525267 4:-85075356 MsG0480023427.01.T01:CDS
ATGGAACAGGGATTATGAGT+TGG 0.528516 4:-85075364 MsG0480023427.01.T01:CDS
TGTCTATGTTGGTAACTTCA+AGG 0.528604 4:-85075883 MsG0480023427.01.T01:CDS
GAGAATTGTCGTCATGGCAA+TGG 0.529534 4:-85075723 MsG0480023427.01.T01:CDS
TTCTTTGAGAATTGTCGTCA+TGG 0.535373 4:-85075729 MsG0480023427.01.T01:CDS
AGAGAAAGGACTGATGATAT+GGG 0.535881 4:-85075156 MsG0480023427.01.T01:CDS
CCGTAAATCCACCGGCGACA+AGG 0.536931 4:-85077772 MsG0480023427.01.T01:CDS
TCAAACGGTGATGTCTATGT+TGG 0.543527 4:-85075894 MsG0480023427.01.T01:CDS
GGCACCCAAACTTGGAAGGA+TGG 0.545646 4:-85075702 MsG0480023427.01.T01:CDS
GGAAAGTACACATGGTCAGA+TGG 0.558174 4:-85075840 MsG0480023427.01.T01:CDS
CTTATGTGGAGCCTTGTCGC+CGG 0.558415 4:+85077761 None:intergenic
ATGTGGAGCCTTGTCGCCGG+TGG 0.562717 4:+85077764 None:intergenic
GAGATGGTCTACTATTCAAA+CGG 0.565588 4:-85075909 MsG0480023427.01.T01:CDS
AGTTTATAGATTTGCAAATG+GGG 0.568661 4:-85075423 MsG0480023427.01.T01:CDS
GCTACCGGCGATGTCTTCGA+TGG 0.576597 4:-85075341 MsG0480023427.01.T01:CDS
TTCAGGAGTAAACTTCTCCA+TGG 0.576629 4:-85075245 MsG0480023427.01.T01:CDS
AAGGATGGAGGTAGCTACAC+TGG 0.576669 4:-85075687 MsG0480023427.01.T01:CDS
AAGAATCGAAAAGTCGGAGG+AGG 0.577402 4:-85076326 MsG0480023427.01.T01:CDS
GATGGAGAGATGACAGGGAA+AGG 0.581963 4:-85075792 MsG0480023427.01.T01:CDS
TGCCGGAGTTGATTTATGGG+TGG 0.582432 4:+85077722 None:intergenic
TGGATAAAAGACAACATGGA+TGG 0.584838 4:-85075383 MsG0480023427.01.T01:CDS
CAATGGCACCCAAACTTGGA+AGG 0.585341 4:-85075706 MsG0480023427.01.T01:CDS
TTCAAGGATGAACTTCCTCA+TGG 0.590492 4:-85075867 MsG0480023427.01.T01:CDS
GATGAACTTCCTCATGGCAA+AGG 0.593188 4:-85075861 MsG0480023427.01.T01:CDS
AGCCACCCATAAATCAACTC+CGG 0.601961 4:-85077724 MsG0480023427.01.T01:CDS
GATTAAAAGAATCGAAAAGT+CGG 0.605694 4:-85076332 MsG0480023427.01.T01:CDS
ACAACCATCGAAGACATCGC+CGG 0.607359 4:+85075337 None:intergenic
GGGTTGATGGAGAGATGACA+GGG 0.608966 4:-85075797 MsG0480023427.01.T01:CDS
ATGGGCCTTCAAAATCCTGA+TGG 0.611434 4:-85075138 MsG0480023427.01.T01:CDS
CTCAAATGGAACAATATACG+AGG 0.634118 4:-85075204 MsG0480023427.01.T01:CDS
AGTTTATAGATCTGCAAATG+GGG 0.639593 4:-85075563 MsG0480023427.01.T01:CDS
GTGTACTTTCCTTTGCCATG+AGG 0.651733 4:+85075852 None:intergenic
CAAACTGACCGTAAATCCAC+CGG 0.652448 4:-85077780 MsG0480023427.01.T01:CDS
GCAAATGGGGATGTCTACAT+CGG 0.652522 4:-85075410 MsG0480023427.01.T01:CDS
AAATTGGATAAAAGACAACA+TGG 0.660956 4:-85075387 MsG0480023427.01.T01:CDS
GTGTTATAGATATGCTAATG+GGG 0.662370 4:-85075285 MsG0480023427.01.T01:CDS
AAGACAACATGGATGGAACA+GGG 0.663275 4:-85075376 MsG0480023427.01.T01:CDS
TAAAAGAATCGAAAAGTCGG+AGG 0.663455 4:-85076329 MsG0480023427.01.T01:CDS
ACCCAAACTTGGAAGGATGG+AGG 0.668025 4:-85075699 MsG0480023427.01.T01:CDS
GTCAGATGGATCAATATACG+AGG 0.688571 4:-85075826 MsG0480023427.01.T01:CDS
ATGGCAAAGGAAAGTACACA+TGG 0.689912 4:-85075848 MsG0480023427.01.T01:CDS
TCAAATGGAACAATATACGA+GGG 0.706226 4:-85075203 MsG0480023427.01.T01:CDS
TCAGATGGATCAATATACGA+GGG 0.726714 4:-85075825 MsG0480023427.01.T01:CDS
ATCATCAGGAGAAATGTACG+AGG 0.734911 4:-85075757 MsG0480023427.01.T01:CDS
TCATCAGGAGAAATGTACGA+GGG 0.736398 4:-85075756 MsG0480023427.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATATTCATAGTAATTT+AGG + Chr4:85076470-85076489 None:intergenic 10.0%
!! TTTATATTCATAGTAATTTA+GGG + Chr4:85076469-85076488 None:intergenic 10.0%
!! ATAAAAGAGAGTAATTTAAT+AGG + Chr4:85075642-85075661 None:intergenic 15.0%
!! ATAACAAAAATCTGTTTAAA+TGG + Chr4:85076382-85076401 None:intergenic 15.0%
!! ATTACTATGAATATAAATAG+AGG - Chr4:85076472-85076491 MsG0480023427.01.T01:intron 15.0%
!! TTAAAACTCCATTTATATTT+CGG + Chr4:85075816-85075835 None:intergenic 15.0%
!! TTACTATGAATATAAATAGA+GGG - Chr4:85076473-85076492 MsG0480023427.01.T01:intron 15.0%
!!! GATAATCACTTTTTTTTTTT+TGG - Chr4:85076027-85076046 MsG0480023427.01.T01:intron 15.0%
!! ACATTAGAGAGTTTATATTA+CGG - Chr4:85075523-85075542 MsG0480023427.01.T01:intron 20.0%
!! CGAAATTAAAAAAAACCAAA+TGG - Chr4:85075938-85075957 MsG0480023427.01.T01:intron 20.0%
!! TAAAAAAAAAAATTGTGCAG+CGG - Chr4:85075833-85075852 MsG0480023427.01.T01:CDS 20.0%
!! TAAAACTCCATTTATATTTC+GGG + Chr4:85075815-85075834 None:intergenic 20.0%
!!! AATCACTTTTTTTTTTTTGG+TGG - Chr4:85076030-85076049 MsG0480023427.01.T01:intron 20.0%
!!! TAGTATTATTTTCGATTTTG+TGG - Chr4:85076682-85076701 MsG0480023427.01.T01:intron 20.0%
!!! TATTGTAGTTTGTAAATGAA+TGG + Chr4:85076863-85076882 None:intergenic 20.0%
!!! TGTTTTGATATTTCTTTCAA+TGG + Chr4:85075506-85075525 None:intergenic 20.0%
!!! TTGTTACAAAAACAAGTTTT+AGG - Chr4:85075590-85075609 MsG0480023427.01.T01:CDS 20.0%
! AAAGATAAAAAAGACGGAAA+AGG - Chr4:85077225-85077244 MsG0480023427.01.T01:intron 25.0%
! AAATTGGAAAATAGACAGAA+TGG - Chr4:85077353-85077372 MsG0480023427.01.T01:intron 25.0%
! AAATTGGATAAAAGACAACA+TGG - Chr4:85077493-85077512 MsG0480023427.01.T01:intron 25.0%
! AAGATAAAAAAGACGGAAAA+GGG - Chr4:85077226-85077245 MsG0480023427.01.T01:intron 25.0%
! AGTATTAGAGGGAATTAAAA+GGG - Chr4:85075402-85075421 MsG0480023427.01.T01:CDS 25.0%
! AGTGTTATAGATATGCTAAT+GGG - Chr4:85077594-85077613 MsG0480023427.01.T01:intron 25.0%
! AGTTTATAGATTTGCAAATG+GGG - Chr4:85077457-85077476 MsG0480023427.01.T01:intron 25.0%
! ATAGATACCCGAAATATAAA+TGG - Chr4:85075805-85075824 MsG0480023427.01.T01:CDS 25.0%
! ATTTATCAAACTGATGAGAT+AGG + Chr4:85075558-85075577 None:intergenic 25.0%
! GAGTTTATAGATTTGCAAAT+GGG - Chr4:85077456-85077475 MsG0480023427.01.T01:intron 25.0%
! GATTAAAAGAATCGAAAAGT+CGG - Chr4:85076548-85076567 MsG0480023427.01.T01:intron 25.0%
! TGAAATCTCTCAAAATTCAA+AGG - Chr4:85075302-85075321 MsG0480023427.01.T01:CDS 25.0%
! TGGGAAAAAGATAAAAAAGA+CGG - Chr4:85077219-85077238 MsG0480023427.01.T01:intron 25.0%
! TTACAAATCATCATTTGACA+CGG + Chr4:85075667-85075686 None:intergenic 25.0%
!!! AATGATTTGTTAGAAGGATA+TGG - Chr4:85075701-85075720 MsG0480023427.01.T01:CDS 25.0%
!!! GTTTCTTTTAAAAGCGATTT+AGG + Chr4:85076443-85076462 None:intergenic 25.0%
!!! GTTTGAAATGATTTGTTAGA+AGG - Chr4:85075695-85075714 MsG0480023427.01.T01:CDS 25.0%
!!! GTTTTAAGTTGAGTATTAGA+GGG - Chr4:85075391-85075410 MsG0480023427.01.T01:CDS 25.0%
!!! TGTTTTAAGTTGAGTATTAG+AGG - Chr4:85075390-85075409 MsG0480023427.01.T01:CDS 25.0%
!!! TTTAATTTGACTTGACCATT+TGG + Chr4:85075956-85075975 None:intergenic 25.0%
AAAATAGACAGAATGGATGA+TGG - Chr4:85077360-85077379 MsG0480023427.01.T01:intron 30.0%
AAACTGTAGGTTTAAAGAGA+TGG - Chr4:85076955-85076974 MsG0480023427.01.T01:intron 30.0%
AAATAGACAGAATGGATGAT+GGG - Chr4:85077361-85077380 MsG0480023427.01.T01:intron 30.0%
AGAAAATACACATGCTCAAA+TGG - Chr4:85077662-85077681 MsG0480023427.01.T01:intron 30.0%
AGATAAAAAAGACGGAAAAG+GGG - Chr4:85077227-85077246 MsG0480023427.01.T01:intron 30.0%
AGTCACATAAATTTGCAGAA+TGG - Chr4:85075465-85075484 MsG0480023427.01.T01:intron 30.0%
AGTTTATAGATCTGCAAATG+GGG - Chr4:85077317-85077336 MsG0480023427.01.T01:intron 30.0%
ATTCTAAGTGCTAACAAACA+AGG + Chr4:85076800-85076819 None:intergenic 30.0%
ATTGTGGAAAAGTCGAATTA+TGG - Chr4:85075857-85075876 MsG0480023427.01.T01:CDS 30.0%
CATAATATATGCAATGTCTG+AGG + Chr4:85076068-85076087 None:intergenic 30.0%
GAGTATTAGAGGGAATTAAA+AGG - Chr4:85075401-85075420 MsG0480023427.01.T01:CDS 30.0%
GAGTGTTATAGATATGCTAA+TGG - Chr4:85077593-85077612 MsG0480023427.01.T01:intron 30.0%
GAGTTTATAGATCTGCAAAT+GGG - Chr4:85077316-85077335 MsG0480023427.01.T01:intron 30.0%
GATAAAAAAGTGACAGAGAA+AGG - Chr4:85077710-85077729 MsG0480023427.01.T01:intron 30.0%
GGAGTTTATAGATTTGCAAA+TGG - Chr4:85077455-85077474 MsG0480023427.01.T01:intron 30.0%
GGATATGGTGATATGATTTA+TGG - Chr4:85075716-85075735 MsG0480023427.01.T01:CDS 30.0%
GTCACATAAATTTGCAGAAT+GGG - Chr4:85075466-85075485 MsG0480023427.01.T01:intron 30.0%
GTGTTATAGATATGCTAATG+GGG - Chr4:85077595-85077614 MsG0480023427.01.T01:intron 30.0%
TAACTTTGTTGCAAAAAGTG+AGG - Chr4:85076233-85076252 MsG0480023427.01.T01:intron 30.0%
TACAAATCATCATTTGACAC+GGG + Chr4:85075666-85075685 None:intergenic 30.0%
TCAAATGGAACAATATACGA+GGG - Chr4:85077677-85077696 MsG0480023427.01.T01:intron 30.0%
TGGTTACGATATATGTAGAA+TGG - Chr4:85075778-85075797 MsG0480023427.01.T01:CDS 30.0%
TTCAAATAAAGCTGAGTCTA+AGG - Chr4:85077783-85077802 MsG0480023427.01.T01:CDS 30.0%
! AAATGGACTTATACATGGAT+TGG - Chr4:85077571-85077590 MsG0480023427.01.T01:intron 30.0%
! ATTTGAAATCTGCAATGAAG+TGG + Chr4:85077770-85077789 None:intergenic 30.0%
! TGAGATTTTGTGTGATTGTT+TGG - Chr4:85076271-85076290 MsG0480023427.01.T01:CDS 30.0%
!! TCTTTTAAAAGCGATTTAGG+TGG + Chr4:85076440-85076459 None:intergenic 30.0%
!! TTTTGATGGTTGTTGTCAAA+TGG - Chr4:85077416-85077435 MsG0480023427.01.T01:intron 30.0%
!!! ACTTTTTTTTTTTTGGTGGC+CGG - Chr4:85076034-85076053 MsG0480023427.01.T01:intron 30.0%
AACAATATACGAGGGTGATT+GGG - Chr4:85077685-85077704 MsG0480023427.01.T01:intron 35.0%
AGAAGTTTACCAGATTGCTT+AGG + Chr4:85076612-85076631 None:intergenic 35.0%
AGAGAAAGGACTGATGATAT+GGG - Chr4:85077724-85077743 MsG0480023427.01.T01:CDS 35.0%
ATCAATATACGAGGGTGATT+GGG - Chr4:85077063-85077082 MsG0480023427.01.T01:intron 35.0%
ATTCAAGGTTTGAATCTGTG+TGG + Chr4:85075202-85075221 None:intergenic 35.0%
CATCGTTTCTTGTAAACTGT+AGG - Chr4:85076942-85076961 MsG0480023427.01.T01:intron 35.0%
CATCTATCTGCATATGTGAT+GGG - Chr4:85076755-85076774 MsG0480023427.01.T01:intron 35.0%
CTCAAATGGAACAATATACG+AGG - Chr4:85077676-85077695 MsG0480023427.01.T01:intron 35.0%
CTTGTTAGATCGATAGAGTA+TGG - Chr4:85075758-85075777 MsG0480023427.01.T01:CDS 35.0%
GAGATGGTCTACTATTCAAA+CGG - Chr4:85076971-85076990 MsG0480023427.01.T01:intron 35.0%
GGAGTTTATAGATCTGCAAA+TGG - Chr4:85077315-85077334 MsG0480023427.01.T01:intron 35.0%
TAAAAGAATCGAAAAGTCGG+AGG - Chr4:85076551-85076570 MsG0480023427.01.T01:intron 35.0%
TCAGATGGATCAATATACGA+GGG - Chr4:85077055-85077074 MsG0480023427.01.T01:intron 35.0%
TCTCTCAAAGCAACAATTCA+AGG + Chr4:85075217-85075236 None:intergenic 35.0%
TGGATAAAAGACAACATGGA+TGG - Chr4:85077497-85077516 MsG0480023427.01.T01:intron 35.0%
! AATGGACTTAGACATGGATT+TGG - Chr4:85077434-85077453 MsG0480023427.01.T01:intron 35.0%
! AATGGACTTGTACATGGATA+TGG - Chr4:85077294-85077313 MsG0480023427.01.T01:intron 35.0%
! AGACGTTGGAATGGAATTTT+TGG + Chr4:85075276-85075295 None:intergenic 35.0%
! ATGTCGATATTGGTAACTTC+AGG - Chr4:85077618-85077637 MsG0480023427.01.T01:intron 35.0%
! ATGTGTATTTTCTGTTGCCA+TGG + Chr4:85077655-85077674 None:intergenic 35.0%
! GACGTTGGAATGGAATTTTT+GGG + Chr4:85075275-85075294 None:intergenic 35.0%
! GATTTTGTGTGATTGTTTGG+TGG - Chr4:85076274-85076293 MsG0480023427.01.T01:CDS 35.0%
! TAGCTCAGTTGATATTGGTA+TGG + Chr4:85076099-85076118 None:intergenic 35.0%
! TGGTCAAATGGACTTATACA+TGG - Chr4:85077566-85077585 MsG0480023427.01.T01:intron 35.0%
! TTCTTTGAGAATTGTCGTCA+TGG - Chr4:85077151-85077170 MsG0480023427.01.T01:intron 35.0%
! TTGTCAAATGGACTTAGACA+TGG - Chr4:85077428-85077447 MsG0480023427.01.T01:intron 35.0%
! TTTGATGGTTGTTGGTCAAA+TGG - Chr4:85077276-85077295 MsG0480023427.01.T01:intron 35.0%
!! GCTAATGGTGATGTTTTTGA+TGG - Chr4:85077402-85077421 MsG0480023427.01.T01:intron 35.0%
!! TGCATATGTGATGGGTTTAT+CGG - Chr4:85076763-85076782 MsG0480023427.01.T01:intron 35.0%
!! TGTCTATGTTGGTAACTTCA+AGG - Chr4:85076997-85077016 MsG0480023427.01.T01:intron 35.0%
AAAATTGTGCAGCGGAATTG+TGG - Chr4:85075841-85075860 MsG0480023427.01.T01:CDS 40.0%
AAAGACAACATGGATGGAAC+AGG - Chr4:85077503-85077522 MsG0480023427.01.T01:intron 40.0%
AAGACAACATGGATGGAACA+GGG - Chr4:85077504-85077523 MsG0480023427.01.T01:intron 40.0%
AGATTTCACGAACAAGACGT+TGG + Chr4:85075290-85075309 None:intergenic 40.0%
ATCATCAGGAGAAATGTACG+AGG - Chr4:85077123-85077142 MsG0480023427.01.T01:intron 40.0%
ATGACTAGAAATAGAGCGAG+TGG - Chr4:85075432-85075451 MsG0480023427.01.T01:CDS 40.0%
ATGGAACAGGGATTATGAGT+TGG - Chr4:85077516-85077535 MsG0480023427.01.T01:intron 40.0%
CAGAGAAAGGACTGATGATA+TGG - Chr4:85077723-85077742 MsG0480023427.01.T01:CDS 40.0%
GAACAATATACGAGGGTGAT+TGG - Chr4:85077684-85077703 MsG0480023427.01.T01:intron 40.0%
GATCAATATACGAGGGTGAT+TGG - Chr4:85077062-85077081 MsG0480023427.01.T01:intron 40.0%
GCATCTATCTGCATATGTGA+TGG - Chr4:85076754-85076773 MsG0480023427.01.T01:intron 40.0%
GTCAGATGGATCAATATACG+AGG - Chr4:85077054-85077073 MsG0480023427.01.T01:intron 40.0%
TAAATTCATGCTCTGTGTGC+TGG - Chr4:85076726-85076745 MsG0480023427.01.T01:intron 40.0%
TCAAACGGTGATGTCTATGT+TGG - Chr4:85076986-85077005 MsG0480023427.01.T01:intron 40.0%
TCATCAGGAGAAATGTACGA+GGG - Chr4:85077124-85077143 MsG0480023427.01.T01:intron 40.0%
TGACTAGAAATAGAGCGAGT+GGG - Chr4:85075433-85075452 MsG0480023427.01.T01:CDS 40.0%
TGGAACAGGGATTATGAGTT+GGG - Chr4:85077517-85077536 MsG0480023427.01.T01:intron 40.0%
TTCAAGGATGAACTTCCTCA+TGG - Chr4:85077013-85077032 MsG0480023427.01.T01:intron 40.0%
TTCAGGAGTAAACTTCTCCA+TGG - Chr4:85077635-85077654 MsG0480023427.01.T01:intron 40.0%
TTCGATGGTTGTTGGTCAAA+TGG - Chr4:85077554-85077573 MsG0480023427.01.T01:intron 40.0%
TTGCAGAATGGGTCATTGAA+GGG - Chr4:85075477-85075496 MsG0480023427.01.T01:intron 40.0%
TTTGCAGAATGGGTCATTGA+AGG - Chr4:85075476-85075495 MsG0480023427.01.T01:intron 40.0%
! AATGTCTGAGGTTCAAACTC+CGG + Chr4:85076056-85076075 None:intergenic 40.0%
! AGTTGATTTATGGGTGGCTT+TGG + Chr4:85075155-85075174 None:intergenic 40.0%
! ATGGCAAAGGAAAGTACACA+TGG - Chr4:85077032-85077051 MsG0480023427.01.T01:intron 40.0%
! GAGCTTAGCTCAGTTGATAT+TGG + Chr4:85076104-85076123 None:intergenic 40.0%
! TGGAACCATCAGGATTTTGA+AGG + Chr4:85077750-85077769 None:intergenic 40.0%
! TGGTCAAATGGACTTGTACA+TGG - Chr4:85077288-85077307 MsG0480023427.01.T01:intron 40.0%
!! GGCTAATGGTGATGTTTTGA+TGG - Chr4:85077261-85077280 MsG0480023427.01.T01:intron 40.0%
!!! GGTGATGTTTTGATGGTTGT+TGG - Chr4:85077268-85077287 MsG0480023427.01.T01:intron 40.0%
AAAAGTCGGAGGAGGAGAAA+AGG - Chr4:85076562-85076581 MsG0480023427.01.T01:intron 45.0%
AAGAATCGAAAAGTCGGAGG+AGG - Chr4:85076554-85076573 MsG0480023427.01.T01:intron 45.0%
ACCTCCATCCTTCCAAGTTT+GGG + Chr4:85077185-85077204 None:intergenic 45.0%
AGAAATAGAGCGAGTGGGAA+AGG - Chr4:85075438-85075457 MsG0480023427.01.T01:CDS 45.0%
AGATCGGGAAAAAACGAACG+CGG - Chr4:85076585-85076604 MsG0480023427.01.T01:intron 45.0%
AGCCACCCATAAATCAACTC+CGG - Chr4:85075156-85075175 MsG0480023427.01.T01:CDS 45.0%
ATGGGCCTTCAAAATCCTGA+TGG - Chr4:85077742-85077761 MsG0480023427.01.T01:CDS 45.0%
CAAACTGACCGTAAATCCAC+CGG - Chr4:85075100-85075119 MsG0480023427.01.T01:CDS 45.0%
GAGAATTGTCGTCATGGCAA+TGG - Chr4:85077157-85077176 MsG0480023427.01.T01:intron 45.0%
GAGGTAGCTACACTGGAATT+GGG - Chr4:85077200-85077219 MsG0480023427.01.T01:intron 45.0%
GATGAACTTCCTCATGGCAA+AGG - Chr4:85077019-85077038 MsG0480023427.01.T01:intron 45.0%
GCAAATGGGGATGTCTACAT+CGG - Chr4:85077470-85077489 MsG0480023427.01.T01:intron 45.0%
GCTAATGGGGATGTCGATAT+TGG - Chr4:85077608-85077627 MsG0480023427.01.T01:intron 45.0%
GGACTGCTCATACAATCATC+AGG - Chr4:85077109-85077128 MsG0480023427.01.T01:intron 45.0%
GGGATGTCTACACTGGAAAT+TGG - Chr4:85077337-85077356 MsG0480023427.01.T01:intron 45.0%
GGGATGTCTACATCGGAAAT+TGG - Chr4:85077477-85077496 MsG0480023427.01.T01:intron 45.0%
GTGTACTTTCCTTTGCCATG+AGG + Chr4:85077031-85077050 None:intergenic 45.0%
TACCTCCATCCTTCCAAGTT+TGG + Chr4:85077186-85077205 None:intergenic 45.0%
TCACGAACAAGACGTTGGAA+TGG + Chr4:85075285-85075304 None:intergenic 45.0%
TGCAATGAAGTGGAACCATC+AGG + Chr4:85077760-85077779 None:intergenic 45.0%
! AAAGCTGAGTCTAAGGCATC+TGG - Chr4:85077790-85077809 MsG0480023427.01.T01:CDS 45.0%
! ATGGGAGAGGGATTTTGGAT+TGG - Chr4:85077379-85077398 MsG0480023427.01.T01:intron 45.0%
! GGAAAGTACACATGGTCAGA+TGG - Chr4:85077040-85077059 MsG0480023427.01.T01:intron 45.0%
! GGATTTACGGTCAGTTTGCT+TGG + Chr4:85075098-85075117 None:intergenic 45.0%
! GGTTGCCGGAGTTGATTTAT+GGG + Chr4:85075164-85075183 None:intergenic 45.0%
! TGGGAGAGGGATTTTGGATT+GGG - Chr4:85077380-85077399 MsG0480023427.01.T01:intron 45.0%
!! ACAGAATGGATGATGGGAGA+GGG - Chr4:85077367-85077386 MsG0480023427.01.T01:intron 45.0%
!! GGGATTTTGGATTGGGCTAA+TGG - Chr4:85077387-85077406 MsG0480023427.01.T01:intron 45.0%
!! TGATTTATGGGTGGCTTTGG+TGG + Chr4:85075152-85075171 None:intergenic 45.0%
!! AATATAATAATAATAATAGA+TGG + Chr4:85076912-85076931 None:intergenic 5.0%
AAGGATGGAGGTAGCTACAC+TGG - Chr4:85077193-85077212 MsG0480023427.01.T01:intron 50.0%
ACAACCATCGAAGACATCGC+CGG + Chr4:85077546-85077565 None:intergenic 50.0%
ACCCAAACTTGGAAGGATGG+AGG - Chr4:85077181-85077200 MsG0480023427.01.T01:intron 50.0%
ATGGCAATGGCACCCAAACT+TGG - Chr4:85077170-85077189 MsG0480023427.01.T01:intron 50.0%
CAATGGCACCCAAACTTGGA+AGG - Chr4:85077174-85077193 MsG0480023427.01.T01:intron 50.0%
GAGGAGGAGAAAAGGAGATC+GGG - Chr4:85076570-85076589 MsG0480023427.01.T01:intron 50.0%
GATGGAGAGATGACAGGGAA+AGG - Chr4:85077088-85077107 MsG0480023427.01.T01:intron 50.0%
GCAAATGGGGATGTCTACAC+TGG - Chr4:85077330-85077349 MsG0480023427.01.T01:intron 50.0%
GCGATGTCTTCGATGGTTGT+TGG - Chr4:85077546-85077565 MsG0480023427.01.T01:intron 50.0%
GGAGGAGGAGAAAAGGAGAT+CGG - Chr4:85076569-85076588 MsG0480023427.01.T01:intron 50.0%
GGAGGTAGCTACACTGGAAT+TGG - Chr4:85077199-85077218 MsG0480023427.01.T01:intron 50.0%
GTGTGGCTTCTTCACTTCGT+CGG + Chr4:85075185-85075204 None:intergenic 50.0%
! CGGTTGCCGGAGTTGATTTA+TGG + Chr4:85075165-85075184 None:intergenic 50.0%
! GGGATTATGAGTTGGGCTAC+CGG - Chr4:85077524-85077543 MsG0480023427.01.T01:intron 50.0%
! TGCCGGAGTTGATTTATGGG+TGG + Chr4:85075161-85075180 None:intergenic 50.0%
! TTCTTCACTTCGTCGGTTGC+CGG + Chr4:85075178-85075197 None:intergenic 50.0%
!! GACAGAATGGATGATGGGAG+AGG - Chr4:85077366-85077385 MsG0480023427.01.T01:intron 50.0%
!! GGGTTGATGGAGAGATGACA+GGG - Chr4:85077083-85077102 MsG0480023427.01.T01:intron 50.0%
!! TACGAGGGTGATTGGGTTGA+TGG - Chr4:85077070-85077089 MsG0480023427.01.T01:intron 50.0%
!! TGGGTTGATGGAGAGATGAC+AGG - Chr4:85077082-85077101 MsG0480023427.01.T01:intron 50.0%
!!! GGATGATGGGAGAGGGATTT+TGG - Chr4:85077374-85077393 MsG0480023427.01.T01:intron 50.0%
CAAGGCTCCACATAAGCTGC+TGG - Chr4:85075126-85075145 MsG0480023427.01.T01:CDS 55.0%
GAACGCGGACCTAAGCAATC+TGG - Chr4:85076600-85076619 MsG0480023427.01.T01:intron 55.0%
GGAAAAGGGGACTGCGACTT+GGG - Chr4:85077240-85077259 MsG0480023427.01.T01:intron 55.0%
GGCACCCAAACTTGGAAGGA+TGG - Chr4:85077178-85077197 MsG0480023427.01.T01:intron 55.0%
! CATGCTCTGTGTGCTGGTAG+AGG - Chr4:85076732-85076751 MsG0480023427.01.T01:intron 55.0%
! CCTTGTCGCCGGTGGATTTA+CGG + Chr4:85075111-85075130 None:intergenic 55.0%
! CTTATGTGGAGCCTTGTCGC+CGG + Chr4:85075122-85075141 None:intergenic 55.0%
! TTGGTGGCCAGCAGCTTATG+TGG + Chr4:85075136-85075155 None:intergenic 55.0%
CCGTAAATCCACCGGCGACA+AGG - Chr4:85075108-85075127 MsG0480023427.01.T01:CDS 60.0%
CGGAAAAGGGGACTGCGACT+TGG - Chr4:85077239-85077258 MsG0480023427.01.T01:intron 60.0%
GCTACCGGCGATGTCTTCGA+TGG - Chr4:85077539-85077558 MsG0480023427.01.T01:intron 60.0%
! GGGACTGCGACTTGGGCTAA+TGG - Chr4:85077247-85077266 MsG0480023427.01.T01:intron 60.0%
! ATGTGGAGCCTTGTCGCCGG+TGG + Chr4:85075119-85075138 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 85075085 85077817 85075085 ID=MsG0480023427.01;Name=MsG0480023427.01
Chr4 mRNA 85075085 85077817 85075085 ID=MsG0480023427.01.T01;Parent=MsG0480023427.01;Name=MsG0480023427.01.T01;_AED=0.34;_eAED=0.39;_QI=0|0|0|1|1|1|4|0|320
Chr4 exon 85077713 85077817 85077713 ID=MsG0480023427.01.T01:exon:2820;Parent=MsG0480023427.01.T01
Chr4 exon 85076271 85076377 85076271 ID=MsG0480023427.01.T01:exon:2819;Parent=MsG0480023427.01.T01
Chr4 exon 85075561 85075938 85075561 ID=MsG0480023427.01.T01:exon:2818;Parent=MsG0480023427.01.T01
Chr4 exon 85075085 85075457 85075085 ID=MsG0480023427.01.T01:exon:2817;Parent=MsG0480023427.01.T01
Chr4 CDS 85077713 85077817 85077713 ID=MsG0480023427.01.T01:cds;Parent=MsG0480023427.01.T01
Chr4 CDS 85076271 85076377 85076271 ID=MsG0480023427.01.T01:cds;Parent=MsG0480023427.01.T01
Chr4 CDS 85075561 85075938 85075561 ID=MsG0480023427.01.T01:cds;Parent=MsG0480023427.01.T01
Chr4 CDS 85075085 85075457 85075085 ID=MsG0480023427.01.T01:cds;Parent=MsG0480023427.01.T01
Gene Sequence

>MsG0480023427.01.T01

ATGGCTCGTACCAAGCAAACTGACCGTAAATCCACCGGCGACAAGGCTCCACATAAGCTGCTGGCCACCAAAGCCACCCATAAATCAACTCCGGCAACCGACGAACTTAAAGCTAATAACTGCTCTACGATTAAAAGAATCGAAAAGTCGGAGGAGGAGAAAAGGAGATCGGGAAAAAACGAACGCGGACCTAAGCAATCTGGTAAACTTCTGTTTAAAGAGATGGTCTACTATTCAAACGGTGATGTCTATGTTGGTAACTTCAAGGATGAACTTCCTCATGGCAAAGGAAAGTACACATGGTCAGATGGATCAATATACGAGGGTGATTGGGTTGATGGAGAGATGACAGGGAAAGGACTGCTCATACAATCATCAGGAGAAATGTACGAGGGTGAATTCTTTGAGAATTGTCGTCATGGCAATGGCACCCAAACTTGGAAGGATGGAGGTAGCTACACTGGAATTGGGAAAAAGATAAAAAAGACGGAAAAGGGGACTGCGACTTGGGCTAATGGTGATGTTTTGATGGTTGTTGGTCAAATGGACTTGTACATGGATATGGAGTTTATAGATCTGCAAATGGGGATACATGGATTTGGAGTTTATAGATTTGCAAATGGGGATGTCTACATCGGAAATTGGATAAAAGACAACATGGATGGAACAGGGATTATGAGTTGGGCTACCGGCGATGTCTTCGATGGTTGTTGGTCAAATGGACTTATACATGGATTGGAGTGTTATAGATATGCTAATGGGGATGTCGATATTGGTAACTTCAGGAGTAAACTTCTCCATGGCAACAGAAAATACACATGCTCAAATGGAACAATATACGAGGGTGATTGGGTTGATAAAAAAGTGACAGAGAAAGGACTGATGATATGGGCCTTCAAAATCCTGATGGTTCCACTTCATTGCAGATTTCAAATAAAGCTGAGTCTAAGGCATCTGGTGTGA

Protein sequence

>MsG0480023427.01.T01

MARTKQTDRKSTGDKAPHKLLATKATHKSTPATDELKANNCSTIKRIEKSEEEKRRSGKNERGPKQSGKLLFKEMVYYSNGDVYVGNFKDELPHGKGKYTWSDGSIYEGDWVDGEMTGKGLLIQSSGEMYEGEFFENCRHGNGTQTWKDGGSYTGIGKKIKKTEKGTATWANGDVLMVVGQMDLYMDMEFIDLQMGIHGFGVYRFANGDVYIGNWIKDNMDGTGIMSWATGDVFDGCWSNGLIHGLECYRYANGDVDIGNFRSKLLHGNRKYTCSNGTIYEGDWVDKKVTEKGLMIWAFKILMVPLHCRFQIKLSLRHLV*