AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010784.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010784.01.T01 MTR_2g090705 97.917 336 7 0 1 336 1 336 0.0 681
MsG0280010784.01.T01 MTR_4g078850 68.362 354 83 5 1 335 1 344 7.27e-173 484
MsG0280010784.01.T01 MTR_2g014470 67.049 349 91 4 1 335 1 339 1.96e-163 459
MsG0280010784.01.T01 MTR_4g015840 65.043 349 100 6 1 336 1 340 3.13e-157 444
MsG0280010784.01.T01 MTR_2g014480 56.734 349 120 5 1 328 1 339 6.69e-132 380
MsG0280010784.01.T01 MTR_3g108020 54.783 345 129 5 1 336 1 327 1.04e-124 361
MsG0280010784.01.T01 MTR_4g015840 60.324 247 81 4 102 335 20 262 1.89e-101 299
MsG0280010784.01.T01 MTR_5g037880 53.886 193 85 1 142 334 86 274 3.24e-69 218
MsG0280010784.01.T01 MTR_5g037880 56.000 75 26 1 4 71 5 79 1.54e-18 84.7
MsG0280010784.01.T01 MTR_3g437840 55.396 139 62 0 197 335 24 162 6.57e-52 169
MsG0280010784.01.T01 MTR_3g088140 44.134 179 99 1 157 334 175 353 6.91e-49 167
MsG0280010784.01.T01 MTR_7g109340 34.218 339 192 8 5 334 27 343 4.29e-48 165
MsG0280010784.01.T01 MTR_3g437360 50.633 158 77 1 156 312 174 331 4.80e-46 159
MsG0280010784.01.T01 MTR_2g006890 42.778 180 102 1 156 334 196 375 2.71e-45 159
MsG0280010784.01.T01 MTR_8g006430 31.566 396 157 11 5 334 15 362 5.49e-34 129
MsG0280010784.01.T01 MTR_3g437850 36.979 192 93 3 3 191 1 167 7.61e-33 120
MsG0280010784.01.T01 MTR_2g087660 41.379 145 83 1 192 334 214 358 6.99e-29 115
MsG0280010784.01.T01 MTR_2g087660 57.746 71 25 1 5 75 14 79 2.01e-11 65.1
MsG0280010784.01.T01 MTR_4g050420 41.379 145 83 1 192 334 212 356 7.75e-28 112
MsG0280010784.01.T01 MTR_5g065160 27.374 358 212 12 4 332 76 414 2.66e-22 97.4
MsG0280010784.01.T01 MTR_5g065160 27.374 358 212 12 4 332 83 421 3.54e-22 97.4
MsG0280010784.01.T01 MTR_3g027580 28.242 347 209 9 4 327 89 418 1.12e-20 92.8
MsG0280010784.01.T01 MTR_7g101070 56.522 69 29 1 4 72 358 425 6.21e-20 90.9
MsG0280010784.01.T01 MTR_4g023470 25.562 356 216 9 1 327 83 418 6.31e-19 87.4
MsG0280010784.01.T01 MTR_2g104030 42.609 115 44 3 4 118 70 162 1.04e-17 84.3
MsG0280010784.01.T01 MTR_3g087030 54.795 73 31 1 3 75 81 151 1.65e-17 83.6
MsG0280010784.01.T01 MTR_2g087660 42.857 98 54 1 192 287 214 311 3.80e-17 81.3
MsG0280010784.01.T01 MTR_2g087660 57.746 71 25 1 5 75 14 79 1.39e-11 65.1
MsG0280010784.01.T01 MTR_7g112360 53.030 66 28 1 5 67 17 82 4.36e-17 77.8
MsG0280010784.01.T01 MTR_7g112360 53.030 66 28 1 5 67 17 82 6.26e-17 76.3
MsG0280010784.01.T01 MTR_8g022310 49.275 69 30 1 4 67 10 78 1.65e-15 74.7
MsG0280010784.01.T01 MTR_8g022310 49.275 69 30 1 4 67 10 78 2.84e-15 73.6
MsG0280010784.01.T01 MTR_8g022310 49.275 69 30 1 4 67 10 78 3.67e-15 74.3
MsG0280010784.01.T01 MTR_8g022310 49.275 69 30 1 4 67 10 78 4.20e-15 73.6
MsG0280010784.01.T01 MTR_5g012530 45.946 74 38 1 4 75 12 85 2.65e-14 73.9
MsG0280010784.01.T01 MTR_5g065860 51.562 64 30 1 4 67 48 110 4.02e-14 69.3
MsG0280010784.01.T01 MTR_2g436560 36.641 131 59 4 4 125 104 219 1.11e-13 71.6
MsG0280010784.01.T01 MTR_1g110310 47.887 71 36 1 4 74 16 85 4.21e-13 70.1
MsG0280010784.01.T01 MTR_7g069480 47.143 70 35 1 3 72 26 93 4.70e-13 70.5
MsG0280010784.01.T01 MTR_4g085070 50.000 60 27 1 11 67 19 78 8.01e-13 65.9
MsG0280010784.01.T01 MTR_5g035770 46.575 73 38 1 4 76 25 96 1.65e-12 68.2
MsG0280010784.01.T01 MTR_6g027110 37.895 95 41 2 3 93 1 81 2.08e-12 64.3
MsG0280010784.01.T01 MTR_5g065160 49.231 65 32 1 4 68 82 145 2.57e-12 67.8
MsG0280010784.01.T01 MTR_5g065160 47.143 70 36 1 4 73 83 151 2.57e-12 67.8
MsG0280010784.01.T01 MTR_1g052110 47.692 65 33 1 6 70 40 103 3.91e-12 66.2
MsG0280010784.01.T01 MTR_6g027030 37.895 95 41 2 3 93 1 81 4.43e-12 65.1
MsG0280010784.01.T01 MTR_6g471050 33.117 154 64 5 30 183 7 121 4.54e-12 67.0
MsG0280010784.01.T01 MTR_7g092380 44.595 74 37 2 6 76 24 96 1.24e-11 64.7
MsG0280010784.01.T01 MTR_6g026940 42.029 69 36 1 3 67 1 69 1.37e-11 62.8
MsG0280010784.01.T01 MTR_1g029460 41.250 80 46 1 3 82 5 83 3.27e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010784.01.T01 AT2G20560 71.053 342 85 3 1 334 1 336 8.26e-165 463
MsG0280010784.01.T01 AT4G28480 69.801 351 85 6 1 334 1 347 2.77e-157 444
MsG0280010784.01.T01 AT3G08910 65.179 336 103 4 1 336 1 322 1.39e-154 436
MsG0280010784.01.T01 AT5G01390 59.420 345 119 5 1 335 1 334 3.91e-142 405
MsG0280010784.01.T01 AT5G25530 55.556 360 115 6 1 336 1 339 1.28e-135 389
MsG0280010784.01.T01 AT5G25530 54.348 368 115 7 1 336 1 347 1.13e-132 382
MsG0280010784.01.T01 AT1G10350 52.857 350 149 5 1 336 1 348 1.01e-124 362
MsG0280010784.01.T01 AT3G47940 54.286 350 144 4 1 336 1 348 1.27e-119 349
MsG0280010784.01.T01 AT1G59725 56.083 337 140 4 1 336 1 330 1.96e-119 348
MsG0280010784.01.T01 AT5G01390 53.254 338 93 5 1 335 1 276 6.26e-116 337
MsG0280010784.01.T01 AT4G28480 55.718 341 92 10 1 334 1 289 8.77e-100 296
MsG0280010784.01.T01 AT2G20550 57.509 273 87 4 84 334 18 283 3.43e-91 274
MsG0280010784.01.T01 AT2G20550 57.509 273 87 4 84 334 18 283 3.43e-91 274
MsG0280010784.01.T01 AT5G01390 45.562 338 80 6 1 335 1 237 4.10e-86 259
MsG0280010784.01.T01 AT5G01390 54.369 206 73 4 1 196 1 195 8.93e-64 202
MsG0280010784.01.T01 AT1G44160 47.191 178 94 0 157 334 176 353 5.93e-50 170
MsG0280010784.01.T01 AT1G11040 40.884 181 107 0 154 334 252 432 7.26e-46 162
MsG0280010784.01.T01 AT3G62600 34.393 346 192 9 2 335 24 346 3.18e-44 155
MsG0280010784.01.T01 AT5G22060 33.067 375 176 10 5 334 15 359 3.12e-39 144
MsG0280010784.01.T01 AT3G44110 33.711 353 202 8 5 334 15 358 1.69e-38 142
MsG0280010784.01.T01 AT3G44110 32.822 326 187 8 5 307 15 331 1.68e-30 119
MsG0280010784.01.T01 AT5G48030 27.095 358 208 13 4 327 94 432 1.01e-22 99.0
MsG0280010784.01.T01 AT1G80030 43.651 126 47 5 4 129 75 176 4.26e-19 88.2
MsG0280010784.01.T01 AT1G80030 43.651 126 47 5 4 129 75 176 5.50e-19 88.2
MsG0280010784.01.T01 AT1G80030 43.651 126 47 5 4 129 75 176 5.50e-19 88.2
MsG0280010784.01.T01 AT1G80030 43.651 126 47 5 4 129 75 176 5.50e-19 88.2
MsG0280010784.01.T01 AT2G22360 55.405 74 31 1 3 76 85 156 6.87e-18 84.7
MsG0280010784.01.T01 AT4G39960 41.228 114 44 3 4 117 85 175 1.72e-17 83.6
MsG0280010784.01.T01 AT4G39960 41.228 114 44 3 4 117 85 175 1.72e-17 83.6
MsG0280010784.01.T01 AT5G03160 53.623 69 31 1 4 72 370 437 2.79e-17 82.8
MsG0280010784.01.T01 AT1G56300 53.030 66 28 1 5 67 14 79 8.20e-17 75.9
MsG0280010784.01.T01 AT1G56300 53.030 66 28 1 5 67 14 79 9.65e-17 77.0
MsG0280010784.01.T01 AT2G35720 41.975 81 45 1 4 82 15 95 3.58e-14 73.6
MsG0280010784.01.T01 AT5G16650 50.746 67 32 1 4 70 11 76 5.73e-14 69.3
MsG0280010784.01.T01 AT5G16650 51.562 64 30 1 4 67 11 73 7.32e-14 68.2
MsG0280010784.01.T01 AT2G41000 46.377 69 33 1 3 67 2 70 3.90e-13 68.2
MsG0280010784.01.T01 AT3G17830 38.849 139 51 3 2 140 61 165 5.30e-13 70.1
MsG0280010784.01.T01 AT1G68370 47.887 71 36 1 4 74 17 86 9.23e-13 68.9
MsG0280010784.01.T01 AT2G41000 46.377 69 33 1 3 67 2 70 9.76e-13 66.2
MsG0280010784.01.T01 AT3G08970 48.000 75 35 2 3 77 26 96 1.03e-12 69.3
MsG0280010784.01.T01 AT3G08970 48.000 75 35 2 3 77 26 96 1.03e-12 69.3
MsG0280010784.01.T01 AT5G05750 34.266 143 73 4 4 146 114 235 1.06e-12 68.2
MsG0280010784.01.T01 AT5G06910 50.769 65 31 1 6 70 31 94 1.11e-12 67.8
MsG0280010784.01.T01 AT1G71000 46.970 66 32 1 5 67 9 74 3.21e-12 64.3
MsG0280010784.01.T01 AT2G21510 47.222 72 37 1 4 75 6 76 3.63e-12 67.0
MsG0280010784.01.T01 AT2G21510 47.222 72 37 1 4 75 6 76 3.63e-12 67.0
MsG0280010784.01.T01 AT1G59980 42.029 69 39 1 6 74 25 92 3.67e-12 67.0
MsG0280010784.01.T01 AT2G21510 47.222 72 37 1 4 75 6 76 4.31e-12 66.6
MsG0280010784.01.T01 AT2G21510 47.222 72 37 1 4 75 6 76 4.31e-12 66.6
MsG0280010784.01.T01 AT1G71000 46.970 66 32 1 5 67 9 74 5.44e-12 63.9
MsG0280010784.01.T01 AT2G21510 47.222 72 37 1 4 75 6 76 5.84e-12 66.2
MsG0280010784.01.T01 AT1G59980 42.029 69 39 1 6 74 25 92 6.24e-12 66.6
MsG0280010784.01.T01 AT3G14200 46.875 64 32 1 6 67 14 77 7.52e-12 64.7
MsG0280010784.01.T01 AT1G72416 45.455 66 34 1 4 67 5 70 1.49e-11 63.2
MsG0280010784.01.T01 AT5G49060 33.913 115 67 2 4 118 99 204 1.59e-11 65.1
MsG0280010784.01.T01 AT5G49060 33.913 115 67 2 4 118 99 204 1.59e-11 65.1
MsG0280010784.01.T01 AT1G72416 45.455 66 34 1 4 67 5 70 1.89e-11 62.8
MsG0280010784.01.T01 AT1G72416 45.455 66 34 1 4 67 5 70 1.95e-11 62.8
MsG0280010784.01.T01 AT5G37750 39.130 92 54 1 4 95 70 159 2.12e-11 63.5
MsG0280010784.01.T01 AT1G72416 45.455 66 34 1 4 67 5 70 2.73e-11 62.4
MsG0280010784.01.T01 AT2G33735 43.077 65 36 1 4 68 22 85 2.97e-11 60.5
MsG0280010784.01.T01 AT2G33735 43.077 65 36 1 4 68 22 85 2.97e-11 60.5
MsG0280010784.01.T01 AT1G24120 41.892 74 42 1 4 77 20 92 3.50e-11 64.3
MsG0280010784.01.T01 AT4G19570 51.515 66 30 1 3 68 65 128 3.90e-11 64.3

Find 118 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAATGTTACATTAAAATT+TGG 0.135986 2:+75055419 MsG0280010784.01.T01:three_prime_UTR
CAGGAGGCAATTGGGAAATT+TGG 0.163872 2:+75055279 MsG0280010784.01.T01:three_prime_UTR
TTCTGAGATTTGCTTAAATT+TGG 0.199073 2:-75052229 None:intergenic
ATATTAATTGGCACATCTTT+TGG 0.215365 2:+75055209 MsG0280010784.01.T01:three_prime_UTR
ATATCAGCAGGTATTGTATT+TGG 0.234873 2:-75054861 None:intergenic
ATTGGGAAATTTGGTTGTTA+TGG 0.283905 2:+75055288 MsG0280010784.01.T01:three_prime_UTR
CCCTTCTTTGTCGGATCCTT+TGG 0.285013 2:-75055092 None:intergenic
AGAGCTGTTTATGATCAATA+TGG 0.297643 2:+75052414 MsG0280010784.01.T01:CDS
TCTCTTGAGGATATATATAA+AGG 0.307635 2:+75052729 MsG0280010784.01.T01:CDS
GGATGTTCATTTCCCTTCTC+AGG 0.314566 2:-75054840 None:intergenic
GGCAGTGGCATTCCTTCTCT+TGG 0.314961 2:-75055071 None:intergenic
TTTCTTCAAGTCATCGTCTT+TGG 0.326757 2:-75052139 None:intergenic
ATTGCCTCCTGTCAAGATTA+TGG 0.339096 2:-75055267 None:intergenic
CTCAAGTTTCCCTTCTTTGT+CGG 0.340852 2:-75055101 None:intergenic
GGATAAAGTAAGATATTAAT+TGG 0.342486 2:+75055197 MsG0280010784.01.T01:exon
TTGTTATTAGGGTTCTTATC+AGG 0.352145 2:-75052192 None:intergenic
AGAGGTAGCAATGGCATGTT+TGG 0.355428 2:+75052618 MsG0280010784.01.T01:CDS
GGTGATCTTCATCTTCTTAG+TGG 0.355739 2:-75052754 None:intergenic
TTAATGTTACATTAAAATTT+GGG 0.367373 2:+75055420 MsG0280010784.01.T01:three_prime_UTR
TAATCTTGACAGGAGGCAAT+TGG 0.388489 2:+75055270 MsG0280010784.01.T01:three_prime_UTR
CTACCAGAGGCATGAGAATC+AGG 0.390225 2:-75052471 None:intergenic
GCCGCAAAATCGCAGAAAAT+CGG 0.395524 2:+75052017 MsG0280010784.01.T01:five_prime_UTR
TTTGTCCCCTTCTTCCATCC+AGG 0.403890 2:-75054807 None:intergenic
GGAATGGGAGGGATGGGAAG+AGG 0.407566 2:+75052600 MsG0280010784.01.T01:CDS
CGAAATCCCTTTGGTGGAAT+GGG 0.411716 2:+75052585 MsG0280010784.01.T01:CDS
CTTATCAGGATGCCACTTCA+TGG 0.411951 2:-75052178 None:intergenic
TGATCCGAAGTGAGCCGAGC+TGG 0.421838 2:-75055146 None:intergenic
CATAGCAACTTGTTCTCAAT+AGG 0.429977 2:-75052705 None:intergenic
GTGAATCTCACCACACTTGA+TGG 0.434303 2:+75054990 MsG0280010784.01.T01:CDS
GAGCTGTTTATGATCAATAT+GGG 0.439767 2:+75052415 MsG0280010784.01.T01:CDS
TTTGGGGATCGAAATCCCTT+TGG 0.447674 2:+75052576 MsG0280010784.01.T01:CDS
TTCAATTGATACCTATGCTT+AGG 0.450997 2:+75051921 None:intergenic
TATGATCAATATGGGGAAGA+TGG 0.451224 2:+75052423 MsG0280010784.01.T01:CDS
CTCTTGAGGATATATATAAA+GGG 0.453643 2:+75052730 MsG0280010784.01.T01:CDS
GATTCTCATGCCTCTGGTAG+TGG 0.458632 2:+75052474 MsG0280010784.01.T01:CDS
AACTGATACGGAAAGTCATC+AGG 0.458809 2:-75052516 None:intergenic
TCGAAATCCCTTTGGTGGAA+TGG 0.459463 2:+75052584 MsG0280010784.01.T01:CDS
GTTAGACAATGAGTTACATT+GGG 0.467007 2:+75055379 MsG0280010784.01.T01:three_prime_UTR
GGGGATCGAAATCCCTTTGG+TGG 0.482474 2:+75052579 MsG0280010784.01.T01:CDS
AATCTTGACAGGAGGCAATT+GGG 0.488582 2:+75055271 MsG0280010784.01.T01:three_prime_UTR
TAGATTACCATAATCTTGAC+AGG 0.489863 2:+75055260 MsG0280010784.01.T01:three_prime_UTR
GTCAAACCTGGATGGAAGAA+GGG 0.491815 2:+75054801 MsG0280010784.01.T01:CDS
TATGGTGATGCTGGAGGAAG+TGG 0.494603 2:+75052645 MsG0280010784.01.T01:CDS
TTCTCTTGCAGAAGCTTTAG+CGG 0.499981 2:+75054959 MsG0280010784.01.T01:CDS
ACTGTGATCAAGAATTTCTC+TGG 0.501571 2:-75052775 None:intergenic
CTTTGGTGGAATGGGAGGGA+TGG 0.502219 2:+75052593 MsG0280010784.01.T01:CDS
TTTGGTGGAATGGGAGGGAT+GGG 0.503447 2:+75052594 MsG0280010784.01.T01:CDS
TGTCAAACCTGGATGGAAGA+AGG 0.504580 2:+75054800 MsG0280010784.01.T01:CDS
TTTGGATCCTATGGTGATGC+TGG 0.505971 2:+75052636 MsG0280010784.01.T01:CDS
GGTTAGACAATGAGTTACAT+TGG 0.506915 2:+75055378 MsG0280010784.01.T01:three_prime_UTR
ATCCCTCCCATTCCACCAAA+GGG 0.515203 2:-75052591 None:intergenic
GATGTTCATTTCCCTTCTCA+GGG 0.518559 2:-75054839 None:intergenic
TTTGTCGGATCCTTTGGCAG+TGG 0.522236 2:-75055086 None:intergenic
GCCAAAGGATCCGACAAAGA+AGG 0.525394 2:+75055091 MsG0280010784.01.T01:CDS
GTCCGATGATTGAACTGATA+CGG 0.527889 2:-75052528 None:intergenic
ATGATCAATATGGGGAAGAT+GGG 0.529413 2:+75052424 MsG0280010784.01.T01:CDS
CCACCTGATTCTCATGCCTC+TGG 0.530969 2:+75052468 MsG0280010784.01.T01:CDS
AATGGCATGTTTGGATCCTA+TGG 0.531436 2:+75052627 MsG0280010784.01.T01:CDS
AAAGATCACTTTCCCTGAGA+AGG 0.531484 2:+75054827 MsG0280010784.01.T01:CDS
TCTCTTGCAGAAGCTTTAGC+GGG 0.533366 2:+75054960 MsG0280010784.01.T01:CDS
ACAAGCTTCTGCAGGTTGAT+CGG 0.533594 2:+75052112 MsG0280010784.01.T01:CDS
CCAAAGGATCCGACAAAGAA+GGG 0.535124 2:+75055092 MsG0280010784.01.T01:CDS
AGAAGGGCAACAACCTGCCA+TGG 0.538305 2:+75052077 MsG0280010784.01.T01:exon
ATGACGAAAATGATATCAGC+AGG 0.540912 2:-75054873 None:intergenic
GCATGAGAATCAGGTGGTGG+TGG 0.542892 2:-75052462 None:intergenic
AGAAGGAATGCCACTGCCAA+AGG 0.547658 2:+75055076 MsG0280010784.01.T01:CDS
GATCCGAAGTGAGCCGAGCT+GGG 0.548429 2:-75055145 None:intergenic
CATCCCTCCCATTCCACCAA+AGG 0.550801 2:-75052592 None:intergenic
ATATGGGGAAGATGGGCTGA+AGG 0.551422 2:+75052431 MsG0280010784.01.T01:CDS
CTCACTTCGGATCAGAAGGC+AGG 0.551807 2:+75055155 MsG0280010784.01.T01:CDS
GGAATGAAGAAAGTCTTGGC+TGG 0.552067 2:+75055176 MsG0280010784.01.T01:CDS
TCGGCTCACTTCGGATCAGA+AGG 0.554858 2:+75055151 MsG0280010784.01.T01:CDS
CTGTCGAAGAGAAAGAGAGA+AGG 0.555619 2:+75052060 MsG0280010784.01.T01:five_prime_UTR
TTCCGTATCAGTTCAATCAT+CGG 0.556341 2:+75052526 MsG0280010784.01.T01:CDS
GTGCAGCAAAGTCACATCGC+TGG 0.559149 2:+75054758 MsG0280010784.01.T01:intron
GCATCAAGGTCCTCCTCGTA+AGG 0.559593 2:+75052677 MsG0280010784.01.T01:CDS
ACAGAAAACTCGCCATGAAG+TGG 0.563345 2:+75052166 MsG0280010784.01.T01:CDS
CACAATGTGTTCACTCGTGA+AGG 0.567306 2:+75054909 MsG0280010784.01.T01:CDS
TGTCGAAGAGAAAGAGAGAA+GGG 0.570583 2:+75052061 MsG0280010784.01.T01:five_prime_UTR
TAGTAGTCAACACCCATGGC+AGG 0.572331 2:-75052090 None:intergenic
GGAACAACCTCTTCATACTC+AGG 0.573763 2:-75055050 None:intergenic
AATCCCTTTGGTGGAATGGG+AGG 0.575318 2:+75052588 MsG0280010784.01.T01:CDS
AGCAACTTGTTCTCAATAGG+AGG 0.576683 2:-75052702 None:intergenic
AAGATCACTTTCCCTGAGAA+GGG 0.579865 2:+75054828 MsG0280010784.01.T01:CDS
CAATTAGTGTCAAACCTGGA+TGG 0.581052 2:+75054793 MsG0280010784.01.T01:CDS
GGCAGGAATGAAGAAAGTCT+TGG 0.581140 2:+75055172 MsG0280010784.01.T01:CDS
GAGAAATTCTTGATCACAGT+GGG 0.581668 2:+75052778 MsG0280010784.01.T01:CDS
TCACGAGTGAACACATTGTG+TGG 0.583017 2:-75054906 None:intergenic
ACTTCCTCCAGCATCACCAT+AGG 0.584524 2:-75052643 None:intergenic
TCAACGTCAAATTCCCAGCT+CGG 0.584854 2:+75055132 MsG0280010784.01.T01:CDS
TATGGGGAAGATGGGCTGAA+GGG 0.585281 2:+75052432 MsG0280010784.01.T01:CDS
TGACTACTACAAGCTTCTGC+AGG 0.587066 2:+75052104 MsG0280010784.01.T01:CDS
ATTCCCAGCTCGGCTCACTT+CGG 0.588709 2:+75055142 MsG0280010784.01.T01:CDS
GAAGAGGTTGTTCCAAGAGA+AGG 0.589371 2:+75055059 MsG0280010784.01.T01:CDS
ATTGTATTGTACCTAAGCAT+AGG 0.593790 2:-75051932 None:intergenic
TTGACAATTAGTGTCAAACC+TGG 0.594845 2:+75054789 MsG0280010784.01.T01:CDS
AGTGGAGTCAATGTGCATCA+AGG 0.595190 2:+75052663 MsG0280010784.01.T01:CDS
TCTCATGCCTCTGGTAGTGG+TGG 0.595916 2:+75052477 MsG0280010784.01.T01:CDS
ATCCCTTTGGTGGAATGGGA+GGG 0.596841 2:+75052589 MsG0280010784.01.T01:CDS
GAAGGGCAACAACCTGCCAT+GGG 0.605250 2:+75052078 MsG0280010784.01.T01:exon
GCTTAGGTACAATACAATCG+TGG 0.609230 2:+75051937 MsG0280010784.01.T01:five_prime_UTR
GAGGCATGAGAATCAGGTGG+TGG 0.609693 2:-75052465 None:intergenic
CGACAAAGAAGGGAAACTTG+AGG 0.610086 2:+75055102 MsG0280010784.01.T01:CDS
CTTAGGTACAATACAATCGT+GGG 0.615629 2:+75051938 MsG0280010784.01.T01:five_prime_UTR
TCAAACCTGGATGGAAGAAG+GGG 0.618407 2:+75054802 MsG0280010784.01.T01:CDS
TCAATAGGAGGCGCCTTACG+AGG 0.622058 2:-75052690 None:intergenic
CAAATTTCTACCATCAAGTG+TGG 0.635207 2:-75055000 None:intergenic
GGGATGGGAAGAGGTAGCAA+TGG 0.641843 2:+75052609 MsG0280010784.01.T01:CDS
GGATCCTATGGTGATGCTGG+AGG 0.665018 2:+75052639 MsG0280010784.01.T01:CDS
ATTACCATAATCTTGACAGG+AGG 0.665326 2:+75055263 MsG0280010784.01.T01:three_prime_UTR
CTTGTAGTAGTCAACACCCA+TGG 0.668721 2:-75052094 None:intergenic
ATAGGAGGCGCCTTACGAGG+AGG 0.673195 2:-75052687 None:intergenic
TGTTCATCCTGAGTATGAAG+AGG 0.673826 2:+75055043 MsG0280010784.01.T01:CDS
CAAGTTGCTATGCTCTCTTG+AGG 0.674506 2:+75052716 MsG0280010784.01.T01:CDS
AGCTGTTTATGATCAATATG+GGG 0.674859 2:+75052416 MsG0280010784.01.T01:CDS
TCTACTACCACCACTACCAG+AGG 0.706463 2:-75052484 None:intergenic
CCAGAGGCATGAGAATCAGG+TGG 0.707871 2:-75052468 None:intergenic
AGAGAAATTCTTGATCACAG+TGG 0.741173 2:+75052777 MsG0280010784.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATGTTACATTAAAATTT+GGG + Chr2:75055420-75055439 MsG0280010784.01.T01:three_prime_UTR 10.0%
!!! AATAGAACATTTTTTTTTTT+TGG + Chr2:75053664-75053683 MsG0280010784.01.T01:intron 10.0%
!!! AATTTAAAATTTTGAAAAAG+TGG - Chr2:75053828-75053847 None:intergenic 10.0%
!!! ATAGAACATTTTTTTTTTTT+GGG + Chr2:75053665-75053684 MsG0280010784.01.T01:intron 10.0%
!!! ATTTAAAATTTTGAAAAAGT+GGG - Chr2:75053827-75053846 None:intergenic 10.0%
!! GTTAATGTTACATTAAAATT+TGG + Chr2:75055419-75055438 MsG0280010784.01.T01:three_prime_UTR 15.0%
!! TAAACAATTACTATAATTCT+AGG - Chr2:75053513-75053532 None:intergenic 15.0%
!! TATAAATATCTAATAACTGA+TGG - Chr2:75052855-75052874 None:intergenic 15.0%
!! TATAAATCAACATTATGATA+TGG - Chr2:75054106-75054125 None:intergenic 15.0%
!!! ATGATGTAAGTTTTTTTTAA+AGG + Chr2:75052256-75052275 MsG0280010784.01.T01:intron 15.0%
!!! CTTAAATTTTCAATTTTTAG+TGG + Chr2:75052283-75052302 MsG0280010784.01.T01:intron 15.0%
!!! TAGTATAGTAATCTATTTTT+TGG + Chr2:75055328-75055347 MsG0280010784.01.T01:three_prime_UTR 15.0%
!!! TATTTTTTGGAATGATATTT+TGG + Chr2:75055341-75055360 MsG0280010784.01.T01:three_prime_UTR 15.0%
!!! TGATGTAAGTTTTTTTTAAA+GGG + Chr2:75052257-75052276 MsG0280010784.01.T01:intron 15.0%
!! AAAAAAACAAAGTCATCAAT+AGG - Chr2:75054725-75054744 None:intergenic 20.0%
!! AAAAAACAAAGTCATCAATA+GGG - Chr2:75054724-75054743 None:intergenic 20.0%
!! ATTCTAGATGTTTAAATTAG+AGG - Chr2:75054629-75054648 None:intergenic 20.0%
!! GGATAAAGTAAGATATTAAT+TGG + Chr2:75055197-75055216 MsG0280010784.01.T01:exon 20.0%
!! GTTCTATTAGAAAAAATTCA+AGG - Chr2:75053652-75053671 None:intergenic 20.0%
!! TGATTTATAGTAGTATGTTT+GGG + Chr2:75054117-75054136 MsG0280010784.01.T01:intron 20.0%
!! TGGTAACTATTGTTATAAAT+TGG + Chr2:75053959-75053978 MsG0280010784.01.T01:intron 20.0%
!! TTGATTTATAGTAGTATGTT+TGG + Chr2:75054116-75054135 MsG0280010784.01.T01:intron 20.0%
!!! AACATTTTTTTTTTTTGGGT+AGG + Chr2:75053669-75053688 MsG0280010784.01.T01:intron 20.0%
!!! ACATTTTTTTTTTTTGGGTA+GGG + Chr2:75053670-75053689 MsG0280010784.01.T01:intron 20.0%
!!! ATATTTTTGCTGAGTTTTTT+GGG + Chr2:75052559-75052578 MsG0280010784.01.T01:CDS 20.0%
!!! GGAATTTGTTTTTTGTTATT+AGG + Chr2:75052371-75052390 MsG0280010784.01.T01:intron 20.0%
!!! TGATATTTTGGTCTATTTTA+TGG + Chr2:75055353-75055372 MsG0280010784.01.T01:three_prime_UTR 20.0%
!!! TTGATGTTTTTCTAGTATAA+TGG + Chr2:75054576-75054595 MsG0280010784.01.T01:intron 20.0%
! AATACTAGATTTGTGATGTT+TGG + Chr2:75054148-75054167 MsG0280010784.01.T01:intron 25.0%
! AGAGTTCTATTGGTATAAAT+TGG + Chr2:75053939-75053958 MsG0280010784.01.T01:intron 25.0%
! ATAATATTAGATAGAGAGTG+GGG + Chr2:75053065-75053084 MsG0280010784.01.T01:intron 25.0%
! ATTTATAGTAGTATGTTTGG+GGG + Chr2:75054119-75054138 MsG0280010784.01.T01:intron 25.0%
! CATAATATTAGATAGAGAGT+GGG + Chr2:75053064-75053083 MsG0280010784.01.T01:intron 25.0%
! CTCTTGAGGATATATATAAA+GGG + Chr2:75052730-75052749 MsG0280010784.01.T01:CDS 25.0%
! GAACCATCAATACTTAAAAT+TGG - Chr2:75053587-75053606 None:intergenic 25.0%
! GATATTAATACAGACTAACA+TGG - Chr2:75054607-75054626 None:intergenic 25.0%
! GATTTATAGTAGTATGTTTG+GGG + Chr2:75054118-75054137 MsG0280010784.01.T01:intron 25.0%
! TAATGAGTTGTATCGAAATA+TGG + Chr2:75053272-75053291 MsG0280010784.01.T01:intron 25.0%
! TCATAATATTAGATAGAGAG+TGG + Chr2:75053063-75053082 MsG0280010784.01.T01:intron 25.0%
! TCTCTTGAGGATATATATAA+AGG + Chr2:75052729-75052748 MsG0280010784.01.T01:CDS 25.0%
! TTGTATCGAAATATGGTTTA+TGG + Chr2:75053279-75053298 MsG0280010784.01.T01:intron 25.0%
!! AAAGTTTCAATTTTTGCATC+TGG + Chr2:75052328-75052347 MsG0280010784.01.T01:intron 25.0%
!! AAGTTTCAATTTTTGCATCT+GGG + Chr2:75052329-75052348 MsG0280010784.01.T01:intron 25.0%
!! ATATTAATTGGCACATCTTT+TGG + Chr2:75055209-75055228 MsG0280010784.01.T01:three_prime_UTR 25.0%
!! TATTAATTGGCACATCTTTT+GGG + Chr2:75055210-75055229 MsG0280010784.01.T01:three_prime_UTR 25.0%
!! TGTCATAAACTTTTTGTATC+TGG + Chr2:75054228-75054247 MsG0280010784.01.T01:intron 25.0%
!! TTAAACTGTTGTTATTGCTA+GGG + Chr2:75054550-75054569 MsG0280010784.01.T01:intron 25.0%
!! TTTAAACTGTTGTTATTGCT+AGG + Chr2:75054549-75054568 MsG0280010784.01.T01:intron 25.0%
!!! AGTTCAAGAAATTTTAACGT+TGG - Chr2:75051979-75051998 None:intergenic 25.0%
!!! ATTTTGGTCTATTTTATGGT+TGG + Chr2:75055357-75055376 MsG0280010784.01.T01:three_prime_UTR 25.0%
!!! CAGCTTCTTTTTTGTTATTA+GGG - Chr2:75052206-75052225 None:intergenic 25.0%
!!! GATATTTTTGCTGAGTTTTT+TGG + Chr2:75052558-75052577 MsG0280010784.01.T01:CDS 25.0%
!!! GTTCAAGAAATTTTAACGTT+GGG - Chr2:75051978-75051997 None:intergenic 25.0%
!!! TATTTTTGCTGAGTTTTTTG+GGG + Chr2:75052560-75052579 MsG0280010784.01.T01:CDS 25.0%
!!! TCAGCTTCTTTTTTGTTATT+AGG - Chr2:75052207-75052226 None:intergenic 25.0%
!!! TCTGGTTTTTGAGATTATAT+TGG + Chr2:75054246-75054265 MsG0280010784.01.T01:intron 25.0%
!!! TTCTGAGATTTGCTTAAATT+TGG - Chr2:75052232-75052251 None:intergenic 25.0%
AACTCAGCAAAAATATCATC+AGG - Chr2:75052555-75052574 None:intergenic 30.0%
AGAGCTGTTTATGATCAATA+TGG + Chr2:75052414-75052433 MsG0280010784.01.T01:CDS 30.0%
AGCTGTTTATGATCAATATG+GGG + Chr2:75052416-75052435 MsG0280010784.01.T01:CDS 30.0%
ATACTTAAAATTGGAGGAAG+AGG - Chr2:75053578-75053597 None:intergenic 30.0%
ATAGACAATAAGTAGCTTCT+TGG + Chr2:75054046-75054065 MsG0280010784.01.T01:intron 30.0%
ATATGAAGCTAGAGTTCTAT+TGG + Chr2:75053929-75053948 MsG0280010784.01.T01:intron 30.0%
ATCTGCTTCTTTATTGAAAG+AGG + Chr2:75053480-75053499 MsG0280010784.01.T01:intron 30.0%
ATGCATGATATCTCTCATTA+TGG + Chr2:75054677-75054696 MsG0280010784.01.T01:intron 30.0%
ATTAAACAAGAGAAGGACAA+CGG - Chr2:75054437-75054456 None:intergenic 30.0%
ATTGCTGAGATTTACATGTT+TGG + Chr2:75052914-75052933 MsG0280010784.01.T01:intron 30.0%
ATTGGGAAATTTGGTTGTTA+TGG + Chr2:75055288-75055307 MsG0280010784.01.T01:three_prime_UTR 30.0%
CCATCAATACTTAAAATTGG+AGG - Chr2:75053584-75053603 None:intergenic 30.0%
GAGCTGTTTATGATCAATAT+GGG + Chr2:75052415-75052434 MsG0280010784.01.T01:CDS 30.0%
GTTAGACAATGAGTTACATT+GGG + Chr2:75055379-75055398 MsG0280010784.01.T01:three_prime_UTR 30.0%
TAATATTAGATAGAGAGTGG+GGG + Chr2:75053066-75053085 MsG0280010784.01.T01:intron 30.0%
TAGAAAAGATTGTGGGAAAT+AGG + Chr2:75053101-75053120 MsG0280010784.01.T01:intron 30.0%
TAGATTACCATAATCTTGAC+AGG + Chr2:75055260-75055279 MsG0280010784.01.T01:three_prime_UTR 30.0%
TCCTATTTCATTATAGTCCA+GGG + Chr2:75054269-75054288 MsG0280010784.01.T01:intron 30.0%
TCTCTTGCTTAATGTTACAA+TGG + Chr2:75054354-75054373 MsG0280010784.01.T01:intron 30.0%
TGGATGAAATAGCAAAAACA+TGG - Chr2:75053389-75053408 None:intergenic 30.0%
TTGTAACATTAAGCAAGAGA+AGG - Chr2:75054354-75054373 None:intergenic 30.0%
! AACATCTAGAATTCGAGATA+AGG + Chr2:75054637-75054656 MsG0280010784.01.T01:intron 30.0%
! ACAGCATTGAAAAAAGAACT+AGG - Chr2:75052824-75052843 None:intergenic 30.0%
! ACATCTAGAATTCGAGATAA+GGG + Chr2:75054638-75054657 MsG0280010784.01.T01:intron 30.0%
! ATAGAACTCTAGCTTCATAT+CGG - Chr2:75053929-75053948 None:intergenic 30.0%
! ATATCAGCAGGTATTGTATT+TGG - Chr2:75054864-75054883 None:intergenic 30.0%
! ATTAATTGGCACATCTTTTG+GGG + Chr2:75055211-75055230 MsG0280010784.01.T01:three_prime_UTR 30.0%
! CCTTCTCTTGTTTAATGTTA+CGG + Chr2:75054441-75054460 MsG0280010784.01.T01:intron 30.0%
! TTGTTATTAGGGTTCTTATC+AGG - Chr2:75052195-75052214 None:intergenic 30.0%
!!! CCTCCAATTTTAAGTATTGA+TGG + Chr2:75053581-75053600 MsG0280010784.01.T01:intron 30.0%
AAACATTCAATCTGACGTGT+CGG - Chr2:75053742-75053761 None:intergenic 35.0%
AAAGTAGCTCAGTTTCAGTT+TGG + Chr2:75052878-75052897 MsG0280010784.01.T01:intron 35.0%
ACCCATAGTAGAAAAGATTG+TGG + Chr2:75053093-75053112 MsG0280010784.01.T01:intron 35.0%
ACCTGTACTGTAGATTATGT+AGG + Chr2:75053153-75053172 MsG0280010784.01.T01:intron 35.0%
ACTGTGATCAAGAATTTCTC+TGG - Chr2:75052778-75052797 None:intergenic 35.0%
AGAGAAATTCTTGATCACAG+TGG + Chr2:75052777-75052796 MsG0280010784.01.T01:CDS 35.0%
ATCCCAAACAATATGCACAA+TGG - Chr2:75054524-75054543 None:intergenic 35.0%
ATGACGAAAATGATATCAGC+AGG - Chr2:75054876-75054895 None:intergenic 35.0%
ATGATCAATATGGGGAAGAT+GGG + Chr2:75052424-75052443 MsG0280010784.01.T01:CDS 35.0%
ATTACCATAATCTTGACAGG+AGG + Chr2:75055263-75055282 MsG0280010784.01.T01:three_prime_UTR 35.0%
ATTGTGCATATTGTTTGGGA+TGG + Chr2:75054523-75054542 MsG0280010784.01.T01:intron 35.0%
CAAATTTCTACCATCAAGTG+TGG - Chr2:75055003-75055022 None:intergenic 35.0%
CAATGCTTCATAGGTTAACA+TGG + Chr2:75053903-75053922 MsG0280010784.01.T01:intron 35.0%
CATTGAAAAAAGAACTAGGC+AGG - Chr2:75052820-75052839 None:intergenic 35.0%
CCCATAGTAGAAAAGATTGT+GGG + Chr2:75053094-75053113 MsG0280010784.01.T01:intron 35.0%
CCGTAACATTAAACAAGAGA+AGG - Chr2:75054444-75054463 None:intergenic 35.0%
CTTAGGTACAATACAATCGT+GGG + Chr2:75051938-75051957 MsG0280010784.01.T01:five_prime_UTR 35.0%
GAGAAATTCTTGATCACAGT+GGG + Chr2:75052778-75052797 MsG0280010784.01.T01:CDS 35.0%
GGTTAGACAATGAGTTACAT+TGG + Chr2:75055378-75055397 MsG0280010784.01.T01:three_prime_UTR 35.0%
GTACTGTAGATTATGTAGGA+AGG + Chr2:75053157-75053176 MsG0280010784.01.T01:intron 35.0%
GTCCTATTTCATTATAGTCC+AGG + Chr2:75054268-75054287 MsG0280010784.01.T01:intron 35.0%
GTGTGACATGTATCACTATA+TGG + Chr2:75053771-75053790 MsG0280010784.01.T01:intron 35.0%
TAATTGGAGAAGAGACTGAT+TGG + Chr2:75053003-75053022 MsG0280010784.01.T01:intron 35.0%
TATGATCAATATGGGGAAGA+TGG + Chr2:75052423-75052442 MsG0280010784.01.T01:CDS 35.0%
TCCCAAACAATATGCACAAT+GGG - Chr2:75054523-75054542 None:intergenic 35.0%
TCCCTGGACTATAATGAAAT+AGG - Chr2:75054273-75054292 None:intergenic 35.0%
TCCTACATAATCTACAGTAC+AGG - Chr2:75053157-75053176 None:intergenic 35.0%
TGCTTAATGTTACAATGGCT+TGG + Chr2:75054359-75054378 MsG0280010784.01.T01:intron 35.0%
TGTAGCATTGCTAGATTTAC+AGG + Chr2:75052951-75052970 MsG0280010784.01.T01:intron 35.0%
TGTCTATGTCAATGCTTCAT+AGG + Chr2:75053894-75053913 MsG0280010784.01.T01:intron 35.0%
TGTTAAACGGGATCAATAAC+TGG + Chr2:75054386-75054405 MsG0280010784.01.T01:intron 35.0%
TTAAAATTGGAGGAAGAGGA+AGG - Chr2:75053574-75053593 None:intergenic 35.0%
TTAAACAAGAGAAGGACAAC+GGG - Chr2:75054436-75054455 None:intergenic 35.0%
TTCCGTATCAGTTCAATCAT+CGG + Chr2:75052526-75052545 MsG0280010784.01.T01:CDS 35.0%
TTGACAATTAGTGTCAAACC+TGG + Chr2:75054789-75054808 MsG0280010784.01.T01:CDS 35.0%
TTTCTTCAAGTCATCGTCTT+TGG - Chr2:75052142-75052161 None:intergenic 35.0%
! AAGTCTTATCTCACTTAGTG+GGG - Chr2:75053328-75053347 None:intergenic 35.0%
! ACAAACACTCGTGGATTAAT+TGG + Chr2:75052987-75053006 MsG0280010784.01.T01:intron 35.0%
! ACAAGTCTTATCTCACTTAG+TGG - Chr2:75053330-75053349 None:intergenic 35.0%
! CAAGTCTTATCTCACTTAGT+GGG - Chr2:75053329-75053348 None:intergenic 35.0%
! CATAGCAACTTGTTCTCAAT+AGG - Chr2:75052708-75052727 None:intergenic 35.0%
! CCCACAATCTTTTCTACTAT+GGG - Chr2:75053097-75053116 None:intergenic 35.0%
! CTTTCTCTTCGACAGTTTTA+CGG - Chr2:75052055-75052074 None:intergenic 35.0%
! TCCCACAATCTTTTCTACTA+TGG - Chr2:75053098-75053117 None:intergenic 35.0%
! TCTTGTTTAATGTTACGGCT+TGG + Chr2:75054446-75054465 MsG0280010784.01.T01:intron 35.0%
!! ATGGCTTGGTGTTTGTTAAA+CGG + Chr2:75054373-75054392 MsG0280010784.01.T01:intron 35.0%
AAAGATCACTTTCCCTGAGA+AGG + Chr2:75054827-75054846 MsG0280010784.01.T01:CDS 40.0%
AACTGATACGGAAAGTCATC+AGG - Chr2:75052519-75052538 None:intergenic 40.0%
AAGATCACTTTCCCTGAGAA+GGG + Chr2:75054828-75054847 MsG0280010784.01.T01:CDS 40.0%
AATCTTGACAGGAGGCAATT+GGG + Chr2:75055271-75055290 MsG0280010784.01.T01:three_prime_UTR 40.0%
AATGGCATGTTTGGATCCTA+TGG + Chr2:75052627-75052646 MsG0280010784.01.T01:CDS 40.0%
ACCCCATTGTGCATATTGTT+TGG + Chr2:75054518-75054537 MsG0280010784.01.T01:intron 40.0%
AGATTGTGGGAAATAGGCTT+AGG + Chr2:75053107-75053126 MsG0280010784.01.T01:intron 40.0%
ATCCACGAGTGTTTGTACTT+CGG - Chr2:75052983-75053002 None:intergenic 40.0%
ATTGCCTCCTGTCAAGATTA+TGG - Chr2:75055270-75055289 None:intergenic 40.0%
CAATTAGTGTCAAACCTGGA+TGG + Chr2:75054793-75054812 MsG0280010784.01.T01:CDS 40.0%
CCAGCATATTCTCTACAACA+TGG - Chr2:75053409-75053428 None:intergenic 40.0%
CCATGTTGTAGAGAATATGC+TGG + Chr2:75053406-75053425 MsG0280010784.01.T01:intron 40.0%
CCCAAACAATATGCACAATG+GGG - Chr2:75054522-75054541 None:intergenic 40.0%
CCCCATTGTGCATATTGTTT+GGG + Chr2:75054519-75054538 MsG0280010784.01.T01:intron 40.0%
CTCAAGTTTCCCTTCTTTGT+CGG - Chr2:75055104-75055123 None:intergenic 40.0%
GAAATAGGCTTAGGTGGTTT+AGG + Chr2:75053116-75053135 MsG0280010784.01.T01:intron 40.0%
GAGGATAGTCAAATCACTAG+AGG + Chr2:75053195-75053214 MsG0280010784.01.T01:intron 40.0%
GATGTTCATTTCCCTTCTCA+GGG - Chr2:75054842-75054861 None:intergenic 40.0%
GCTTAGGTACAATACAATCG+TGG + Chr2:75051937-75051956 MsG0280010784.01.T01:five_prime_UTR 40.0%
GGTGATCTTCATCTTCTTAG+TGG - Chr2:75052757-75052776 None:intergenic 40.0%
GTCCGATGATTGAACTGATA+CGG - Chr2:75052531-75052550 None:intergenic 40.0%
GTTGTAGAGAATATGCTGGT+AGG + Chr2:75053410-75053429 MsG0280010784.01.T01:intron 40.0%
TAAACAAGAGAAGGACAACG+GGG - Chr2:75054435-75054454 None:intergenic 40.0%
TAATCTTGACAGGAGGCAAT+TGG + Chr2:75055270-75055289 MsG0280010784.01.T01:three_prime_UTR 40.0%
TCATCAAAATGTTCATCCGC+AGG - Chr2:75054307-75054326 None:intergenic 40.0%
TGTCGAAGAGAAAGAGAGAA+GGG + Chr2:75052061-75052080 MsG0280010784.01.T01:five_prime_UTR 40.0%
TGTTAAACGGGATCAATAGC+TGG + Chr2:75054473-75054492 MsG0280010784.01.T01:intron 40.0%
TGTTCATCCTGAGTATGAAG+AGG + Chr2:75055043-75055062 MsG0280010784.01.T01:CDS 40.0%
! AGCAACTTGTTCTCAATAGG+AGG - Chr2:75052705-75052724 None:intergenic 40.0%
! ATTTTGCGGCGAATTTGTGA+AGG - Chr2:75052007-75052026 None:intergenic 40.0%
! CTGAGTTTTACACTCAAGTC+AGG + Chr2:75053622-75053641 MsG0280010784.01.T01:intron 40.0%
! GGGGTTAGTACATTAGACTA+AGG - Chr2:75054416-75054435 None:intergenic 40.0%
! TCCGATTTTCTGCGATTTTG+CGG - Chr2:75052021-75052040 None:intergenic 40.0%
! TTCTCTTGCAGAAGCTTTAG+CGG + Chr2:75054959-75054978 MsG0280010784.01.T01:CDS 40.0%
! TTTTGCGGCGAATTTGTGAA+GGG - Chr2:75052006-75052025 None:intergenic 40.0%
!! ACGGCTTGGTGTTTGTTAAA+CGG + Chr2:75054460-75054479 MsG0280010784.01.T01:intron 40.0%
!! CTGATTGGTCTCTTATAGCT+CGG + Chr2:75053018-75053037 MsG0280010784.01.T01:intron 40.0%
!! GTAGGTTTTGTAGTTGTGGT+TGG + Chr2:75053428-75053447 MsG0280010784.01.T01:intron 40.0%
!! TGAAGCATTGACATAGACAC+CGG - Chr2:75053893-75053912 None:intergenic 40.0%
!! TGGCTTGGTGTTTGTTAAAC+GGG + Chr2:75054374-75054393 MsG0280010784.01.T01:intron 40.0%
!!! GGTCATGCTGATTTTGTGTT+GGG + Chr2:75052350-75052369 MsG0280010784.01.T01:intron 40.0%
AACCGAAGTACAAACACTCG+TGG + Chr2:75052978-75052997 MsG0280010784.01.T01:intron 45.0%
AAGGACAGTAGATGAGATGG+AGG + Chr2:75053176-75053195 MsG0280010784.01.T01:intron 45.0%
ACAGAAAACTCGCCATGAAG+TGG + Chr2:75052166-75052185 MsG0280010784.01.T01:CDS 45.0%
AGAAGCAGATGCCACACAAA+TGG - Chr2:75053470-75053489 None:intergenic 45.0%
AGAGGTAGCAATGGCATGTT+TGG + Chr2:75052618-75052637 MsG0280010784.01.T01:CDS 45.0%
AGGAAGGACAGTAGATGAGA+TGG + Chr2:75053173-75053192 MsG0280010784.01.T01:intron 45.0%
AGTCAAATCACTAGAGGCAG+AGG + Chr2:75053201-75053220 MsG0280010784.01.T01:intron 45.0%
AGTGGAGTCAATGTGCATCA+AGG + Chr2:75052663-75052682 MsG0280010784.01.T01:CDS 45.0%
CAAGTTGCTATGCTCTCTTG+AGG + Chr2:75052716-75052735 MsG0280010784.01.T01:CDS 45.0%
CACAATGTGTTCACTCGTGA+AGG + Chr2:75054909-75054928 MsG0280010784.01.T01:CDS 45.0%
CAGGAGGCAATTGGGAAATT+TGG + Chr2:75055279-75055298 MsG0280010784.01.T01:three_prime_UTR 45.0%
CCAAAGGATCCGACAAAGAA+GGG + Chr2:75055092-75055111 MsG0280010784.01.T01:CDS 45.0%
CGAAATCCCTTTGGTGGAAT+GGG + Chr2:75052585-75052604 MsG0280010784.01.T01:CDS 45.0%
CGACAAAGAAGGGAAACTTG+AGG + Chr2:75055102-75055121 MsG0280010784.01.T01:CDS 45.0%
CTGTCGAAGAGAAAGAGAGA+AGG + Chr2:75052060-75052079 MsG0280010784.01.T01:five_prime_UTR 45.0%
CTTATCTCACTTAGTGGGGT+TGG - Chr2:75053324-75053343 None:intergenic 45.0%
CTTGTAGTAGTCAACACCCA+TGG - Chr2:75052097-75052116 None:intergenic 45.0%
GAAGAGGTTGTTCCAAGAGA+AGG + Chr2:75055059-75055078 MsG0280010784.01.T01:CDS 45.0%
GCCGCAAAATCGCAGAAAAT+CGG + Chr2:75052017-75052036 MsG0280010784.01.T01:five_prime_UTR 45.0%
GGAACAACCTCTTCATACTC+AGG - Chr2:75055053-75055072 None:intergenic 45.0%
GGAATGAAGAAAGTCTTGGC+TGG + Chr2:75055176-75055195 MsG0280010784.01.T01:CDS 45.0%
GGATGTTCATTTCCCTTCTC+AGG - Chr2:75054843-75054862 None:intergenic 45.0%
GGCAGGAATGAAGAAAGTCT+TGG + Chr2:75055172-75055191 MsG0280010784.01.T01:CDS 45.0%
GTCAAACCTGGATGGAAGAA+GGG + Chr2:75054801-75054820 MsG0280010784.01.T01:CDS 45.0%
GTGAATCTCACCACACTTGA+TGG + Chr2:75054990-75055009 MsG0280010784.01.T01:CDS 45.0%
TCAAACCTGGATGGAAGAAG+GGG + Chr2:75054802-75054821 MsG0280010784.01.T01:CDS 45.0%
TCAACGTCAAATTCCCAGCT+CGG + Chr2:75055132-75055151 MsG0280010784.01.T01:CDS 45.0%
TCACGAGTGAACACATTGTG+TGG - Chr2:75054909-75054928 None:intergenic 45.0%
TCGAAATCCCTTTGGTGGAA+TGG + Chr2:75052584-75052603 MsG0280010784.01.T01:CDS 45.0%
TGACACAGACACTTTGACAC+TGG - Chr2:75053855-75053874 None:intergenic 45.0%
TGACTACTACAAGCTTCTGC+AGG + Chr2:75052104-75052123 MsG0280010784.01.T01:CDS 45.0%
TGTCAAACCTGGATGGAAGA+AGG + Chr2:75054800-75054819 MsG0280010784.01.T01:CDS 45.0%
TTGTGGGAAATAGGCTTAGG+TGG + Chr2:75053110-75053129 MsG0280010784.01.T01:intron 45.0%
TTTGGGGATCGAAATCCCTT+TGG + Chr2:75052576-75052595 MsG0280010784.01.T01:CDS 45.0%
! CAAAGTGTCTGTGTCATGTC+TGG + Chr2:75053859-75053878 MsG0280010784.01.T01:intron 45.0%
! CTTATCAGGATGCCACTTCA+TGG - Chr2:75052181-75052200 None:intergenic 45.0%
! GACAGTTTTACGGCACTTTC+TGG - Chr2:75052045-75052064 None:intergenic 45.0%
! TCTCTTGCAGAAGCTTTAGC+GGG + Chr2:75054960-75054979 MsG0280010784.01.T01:CDS 45.0%
! TGTGGTTGGTGCAATGTATG+TGG + Chr2:75053442-75053461 MsG0280010784.01.T01:intron 45.0%
! TTTGGATCCTATGGTGATGC+TGG + Chr2:75052636-75052655 MsG0280010784.01.T01:CDS 45.0%
!! ACAAGCTTCTGCAGGTTGAT+CGG + Chr2:75052112-75052131 MsG0280010784.01.T01:CDS 45.0%
!! CGGCTTGGTGTTTGTTAAAC+GGG + Chr2:75054461-75054480 MsG0280010784.01.T01:intron 45.0%
!! CTATATGGCATCGACACATG+TGG + Chr2:75053786-75053805 MsG0280010784.01.T01:intron 45.0%
!! GCTGGTAGGTTTTGTAGTTG+TGG + Chr2:75053424-75053443 MsG0280010784.01.T01:intron 45.0%
!! TGTATGTGGTGCCATTTGTG+TGG + Chr2:75053456-75053475 MsG0280010784.01.T01:intron 45.0%
!!! GGGTCATGCTGATTTTGTGT+TGG + Chr2:75052349-75052368 MsG0280010784.01.T01:intron 45.0%
AATCCCTTTGGTGGAATGGG+AGG + Chr2:75052588-75052607 MsG0280010784.01.T01:CDS 50.0%
ACTAGAGGCAGAGGAAGACT+TGG + Chr2:75053210-75053229 MsG0280010784.01.T01:intron 50.0%
ACTTCCTCCAGCATCACCAT+AGG - Chr2:75052646-75052665 None:intergenic 50.0%
AGAAGGAATGCCACTGCCAA+AGG + Chr2:75055076-75055095 MsG0280010784.01.T01:CDS 50.0%
AGGGATGTAGAAGTCTCCTG+CGG + Chr2:75054288-75054307 MsG0280010784.01.T01:intron 50.0%
ATCCCTCCCATTCCACCAAA+GGG - Chr2:75052594-75052613 None:intergenic 50.0%
ATCCCTTTGGTGGAATGGGA+GGG + Chr2:75052589-75052608 MsG0280010784.01.T01:CDS 50.0%
CCCTTCTTTGTCGGATCCTT+TGG - Chr2:75055095-75055114 None:intergenic 50.0%
GATTCTCATGCCTCTGGTAG+TGG + Chr2:75052474-75052493 MsG0280010784.01.T01:CDS 50.0%
GCCAAAGGATCCGACAAAGA+AGG + Chr2:75055091-75055110 MsG0280010784.01.T01:CDS 50.0%
GTGACTTTGCTGCACTCGAA+AGG - Chr2:75054753-75054772 None:intergenic 50.0%
TAGTAGTCAACACCCATGGC+AGG - Chr2:75052093-75052112 None:intergenic 50.0%
TCTACTACCACCACTACCAG+AGG - Chr2:75052487-75052506 None:intergenic 50.0%
TTTGGTGGAATGGGAGGGAT+GGG + Chr2:75052594-75052613 MsG0280010784.01.T01:CDS 50.0%
TTTGTCCCCTTCTTCCATCC+AGG - Chr2:75054810-75054829 None:intergenic 50.0%
TTTGTCGGATCCTTTGGCAG+TGG - Chr2:75055089-75055108 None:intergenic 50.0%
! CTACCAGAGGCATGAGAATC+AGG - Chr2:75052474-75052493 None:intergenic 50.0%
! TATGGTGATGCTGGAGGAAG+TGG + Chr2:75052645-75052664 MsG0280010784.01.T01:CDS 50.0%
!! ACTTAGTGGGGTTGGCTACA+TGG - Chr2:75053316-75053335 None:intergenic 50.0%
!! ATATGGGGAAGATGGGCTGA+AGG + Chr2:75052431-75052450 MsG0280010784.01.T01:CDS 50.0%
!! TATGGGGAAGATGGGCTGAA+GGG + Chr2:75052432-75052451 MsG0280010784.01.T01:CDS 50.0%
AGAAGGGCAACAACCTGCCA+TGG + Chr2:75052077-75052096 MsG0280010784.01.T01:exon 55.0%
ATTCCCAGCTCGGCTCACTT+CGG + Chr2:75055142-75055161 MsG0280010784.01.T01:CDS 55.0%
CATCCCTCCCATTCCACCAA+AGG - Chr2:75052595-75052614 None:intergenic 55.0%
CCACCTGATTCTCATGCCTC+TGG + Chr2:75052468-75052487 MsG0280010784.01.T01:CDS 55.0%
CTCACTTCGGATCAGAAGGC+AGG + Chr2:75055155-75055174 MsG0280010784.01.T01:CDS 55.0%
CTTTGGTGGAATGGGAGGGA+TGG + Chr2:75052593-75052612 MsG0280010784.01.T01:CDS 55.0%
GAAGGGCAACAACCTGCCAT+GGG + Chr2:75052078-75052097 MsG0280010784.01.T01:exon 55.0%
GAGGCATGAGAATCAGGTGG+TGG - Chr2:75052468-75052487 None:intergenic 55.0%
GCAGGAGACTTCTACATCCC+TGG - Chr2:75054289-75054308 None:intergenic 55.0%
GCATCAAGGTCCTCCTCGTA+AGG + Chr2:75052677-75052696 MsG0280010784.01.T01:CDS 55.0%
GGAAGAGGAAGGTTCGACTG+CGG - Chr2:75053563-75053582 None:intergenic 55.0%
GGCAGTGGCATTCCTTCTCT+TGG - Chr2:75055074-75055093 None:intergenic 55.0%
GGGATGGGAAGAGGTAGCAA+TGG + Chr2:75052609-75052628 MsG0280010784.01.T01:CDS 55.0%
GGGGATCGAAATCCCTTTGG+TGG + Chr2:75052579-75052598 MsG0280010784.01.T01:CDS 55.0%
GTGCAGCAAAGTCACATCGC+TGG + Chr2:75054758-75054777 MsG0280010784.01.T01:intron 55.0%
TCGGCTCACTTCGGATCAGA+AGG + Chr2:75055151-75055170 MsG0280010784.01.T01:CDS 55.0%
! CCAGAGGCATGAGAATCAGG+TGG - Chr2:75052471-75052490 None:intergenic 55.0%
! GCATGAGAATCAGGTGGTGG+TGG - Chr2:75052465-75052484 None:intergenic 55.0%
! GGATCCTATGGTGATGCTGG+AGG + Chr2:75052639-75052658 MsG0280010784.01.T01:CDS 55.0%
!! GTCATGTCTGGTGTCGTGTC+CGG + Chr2:75053871-75053890 MsG0280010784.01.T01:intron 55.0%
!! TCAATAGGAGGCGCCTTACG+AGG - Chr2:75052693-75052712 None:intergenic 55.0%
!! TCTCATGCCTCTGGTAGTGG+TGG + Chr2:75052477-75052496 MsG0280010784.01.T01:CDS 55.0%
GATCCGAAGTGAGCCGAGCT+GGG - Chr2:75055148-75055167 None:intergenic 60.0%
GGAATGGGAGGGATGGGAAG+AGG + Chr2:75052600-75052619 MsG0280010784.01.T01:CDS 60.0%
TGATCCGAAGTGAGCCGAGC+TGG - Chr2:75055149-75055168 None:intergenic 60.0%
!! ATAGGAGGCGCCTTACGAGG+AGG - Chr2:75052690-75052709 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 75051935 75055442 75051935 ID=MsG0280010784.01;Name=MsG0280010784.01
Chr2 mRNA 75051935 75055442 75051935 ID=MsG0280010784.01.T01;Parent=MsG0280010784.01;Name=MsG0280010784.01.T01;_AED=0.50;_eAED=0.50;_QI=161|1|1|1|1|1|3|240|336
Chr2 exon 75051935 75052260 75051935 ID=MsG0280010784.01.T01:exon:27687;Parent=MsG0280010784.01.T01
Chr2 exon 75052393 75052799 75052393 ID=MsG0280010784.01.T01:exon:27688;Parent=MsG0280010784.01.T01
Chr2 exon 75054764 75055442 75054764 ID=MsG0280010784.01.T01:exon:27689;Parent=MsG0280010784.01.T01
Chr2 five_prime_UTR 75051935 75052095 75051935 ID=MsG0280010784.01.T01:five_prime_utr;Parent=MsG0280010784.01.T01
Chr2 CDS 75052096 75052260 75052096 ID=MsG0280010784.01.T01:cds;Parent=MsG0280010784.01.T01
Chr2 CDS 75052393 75052799 75052393 ID=MsG0280010784.01.T01:cds;Parent=MsG0280010784.01.T01
Chr2 CDS 75054764 75055202 75054764 ID=MsG0280010784.01.T01:cds;Parent=MsG0280010784.01.T01
Chr2 three_prime_UTR 75055203 75055442 75055203 ID=MsG0280010784.01.T01:three_prime_utr;Parent=MsG0280010784.01.T01
Gene Sequence

>MsG0280010784.01.T01

ATGGGTGTTGACTACTACAAGCTTCTGCAGGTTGATCGGAACGCCAAAGACGATGACTTGAAGAAAGCTTACAGAAAACTCGCCATGAAGTGGCATCCTGATAAGAACCCTAATAACAAAAAAGAAGCTGAAGCCAAATTTAAGCAAATCTCAGAAGCTTATGATGTATTGAGTGATTCTAACAAGAGAGCTGTTTATGATCAATATGGGGAAGATGGGCTGAAGGGTCAAATGCCACCACCACCTGATTCTCATGCCTCTGGTAGTGGTGGTAGTAGAAACTTTTCGCCTGATGACTTTCCGTATCAGTTCAATCATCGGACTCCTGATGATATTTTTGCTGAGTTTTTTGGGGATCGAAATCCCTTTGGTGGAATGGGAGGGATGGGAAGAGGTAGCAATGGCATGTTTGGATCCTATGGTGATGCTGGAGGAAGTGGAGTCAATGTGCATCAAGGTCCTCCTCGTAAGGCGCCTCCTATTGAGAACAAGTTGCTATGCTCTCTTGAGGATATATATAAAGGGACCACTAAGAAGATGAAGATCACCAGAGAAATTCTTGATCACAGTGGCAAAGTCACATCGCTGGATGAAATCTTGACAATTAGTGTCAAACCTGGATGGAAGAAGGGGACAAAGATCACTTTCCCTGAGAAGGGAAATGAACATCCAAATACAATACCTGCTGATATCATTTTCGTCATTGATGAAAAACCACACAATGTGTTCACTCGTGAAGGAAATGATCTAATTGTAACTCAGAAAATTTCTCTTGCAGAAGCTTTAGCGGGTTGTACAGTGAATCTCACCACACTTGATGGTAGAAATTTGACTGTAGTGATCAACAATGTTGTTCATCCTGAGTATGAAGAGGTTGTTCCAAGAGAAGGAATGCCACTGCCAAAGGATCCGACAAAGAAGGGAAACTTGAGGATAAAGTTCAACGTCAAATTCCCAGCTCGGCTCACTTCGGATCAGAAGGCAGGAATGAAGAAAGTCTTGGCTGGATAA

Protein sequence

>MsG0280010784.01.T01

MGVDYYKLLQVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYDVLSDSNKRAVYDQYGEDGLKGQMPPPPDSHASGSGGSRNFSPDDFPYQFNHRTPDDIFAEFFGDRNPFGGMGGMGRGSNGMFGSYGDAGGSGVNVHQGPPRKAPPIENKLLCSLEDIYKGTTKKMKITREILDHSGKVTSLDEILTISVKPGWKKGTKITFPEKGNEHPNTIPADIIFVIDEKPHNVFTREGNDLIVTQKISLAEALAGCTVNLTTLDGRNLTVVINNVVHPEYEEVVPREGMPLPKDPTKKGNLRIKFNVKFPARLTSDQKAGMKKVLAG*