Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033960.01.T01 | XP_003598604.2 | 56.926 | 462 | 169 | 4 | 4 | 453 | 2 | 445 | 1.20E-174 | 507 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033960.01.T01 | Q8GYH5 | 36.964 | 303 | 182 | 3 | 10 | 305 | 3 | 303 | 1.04E-62 | 212 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033960.01.T01 | G7IYT6 | 56.926 | 462 | 169 | 4 | 4 | 453 | 2 | 445 | 5.75e-175 | 507 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033960.01.T01 | MTR_3g016210 | 56.926 | 462 | 169 | 4 | 4 | 453 | 2 | 445 | 1.46e-178 | 507 |
| MsG0680033960.01.T01 | MTR_8g072510 | 59.540 | 435 | 162 | 1 | 4 | 438 | 2 | 422 | 1.34e-166 | 477 |
| MsG0680033960.01.T01 | MTR_8g039620 | 59.286 | 420 | 151 | 4 | 1 | 414 | 1 | 406 | 3.63e-161 | 462 |
| MsG0680033960.01.T01 | MTR_8g062410 | 57.208 | 437 | 164 | 4 | 4 | 438 | 2 | 417 | 2.56e-155 | 448 |
| MsG0680033960.01.T01 | MTR_1g059930 | 60.606 | 396 | 130 | 2 | 1 | 383 | 1 | 383 | 3.28e-154 | 445 |
| MsG0680033960.01.T01 | MTR_7g021090 | 56.691 | 411 | 151 | 5 | 1 | 407 | 1 | 388 | 1.46e-151 | 437 |
| MsG0680033960.01.T01 | MTR_8g068990 | 57.474 | 388 | 134 | 4 | 1 | 385 | 1 | 360 | 9.01e-144 | 419 |
| MsG0680033960.01.T01 | MTR_8g069880 | 56.790 | 405 | 159 | 3 | 12 | 415 | 7 | 396 | 1.35e-143 | 419 |
| MsG0680033960.01.T01 | MTR_8g073260 | 50.735 | 408 | 186 | 2 | 11 | 418 | 10 | 402 | 6.34e-140 | 409 |
| MsG0680033960.01.T01 | MTR_7g451420 | 64.821 | 307 | 108 | 0 | 9 | 315 | 6 | 312 | 1.39e-134 | 390 |
| MsG0680033960.01.T01 | MTR_8g467780 | 50.112 | 445 | 195 | 5 | 10 | 440 | 9 | 440 | 1.25e-132 | 390 |
| MsG0680033960.01.T01 | MTR_8g066670 | 51.147 | 436 | 196 | 4 | 10 | 444 | 1073 | 1492 | 1.09e-131 | 415 |
| MsG0680033960.01.T01 | MTR_8g040930 | 53.571 | 392 | 162 | 3 | 54 | 439 | 1 | 378 | 6.73e-131 | 384 |
| MsG0680033960.01.T01 | MTR_8g041240 | 53.571 | 392 | 162 | 3 | 54 | 439 | 1 | 378 | 6.73e-131 | 384 |
| MsG0680033960.01.T01 | MTR_3g105650 | 40.798 | 451 | 203 | 7 | 12 | 451 | 5 | 402 | 1.78e-105 | 320 |
| MsG0680033960.01.T01 | MTR_8g073275 | 40.919 | 479 | 174 | 12 | 54 | 458 | 1 | 444 | 3.91e-95 | 295 |
| MsG0680033960.01.T01 | MTR_1g069110 | 23.261 | 417 | 231 | 11 | 19 | 410 | 25 | 377 | 3.46e-21 | 96.3 |
| MsG0680033960.01.T01 | MTR_7g099580 | 25.253 | 297 | 171 | 8 | 24 | 315 | 24 | 274 | 4.29e-21 | 94.4 |
| MsG0680033960.01.T01 | MTR_2g101320 | 28.704 | 216 | 136 | 4 | 40 | 247 | 134 | 339 | 8.03e-17 | 83.6 |
| MsG0680033960.01.T01 | MTR_7g099570 | 26.066 | 211 | 144 | 3 | 6 | 212 | 3 | 205 | 2.64e-15 | 78.6 |
| MsG0680033960.01.T01 | MTR_7g117620 | 28.638 | 213 | 124 | 4 | 47 | 258 | 119 | 304 | 5.86e-14 | 74.3 |
| MsG0680033960.01.T01 | MTR_1g115575 | 23.724 | 333 | 208 | 10 | 15 | 319 | 138 | 452 | 7.52e-12 | 67.8 |
| MsG0680033960.01.T01 | MTR_2g101310 | 25.822 | 213 | 140 | 3 | 43 | 247 | 137 | 339 | 8.79e-12 | 67.8 |
| MsG0680033960.01.T01 | MTR_2g101310 | 25.822 | 213 | 140 | 3 | 43 | 247 | 137 | 339 | 1.36e-11 | 67.0 |
| MsG0680033960.01.T01 | MTR_4g062100 | 20.645 | 465 | 291 | 12 | 15 | 444 | 77 | 498 | 1.63e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033960.01.T01 | AT4G10720 | 36.077 | 413 | 227 | 5 | 11 | 413 | 4 | 389 | 4.28e-83 | 263 |
| MsG0680033960.01.T01 | AT4G10720 | 40.000 | 320 | 184 | 2 | 11 | 322 | 4 | 323 | 1.61e-78 | 250 |
| MsG0680033960.01.T01 | AT5G54620 | 32.373 | 451 | 243 | 7 | 11 | 452 | 4 | 401 | 5.61e-69 | 226 |
| MsG0680033960.01.T01 | AT5G15500 | 40.323 | 310 | 177 | 4 | 12 | 313 | 6 | 315 | 6.57e-69 | 227 |
| MsG0680033960.01.T01 | AT1G14480 | 33.710 | 442 | 241 | 8 | 11 | 439 | 4 | 406 | 5.68e-68 | 224 |
| MsG0680033960.01.T01 | AT5G54610 | 36.964 | 303 | 182 | 3 | 10 | 305 | 3 | 303 | 1.06e-63 | 212 |
| MsG0680033960.01.T01 | AT1G14500 | 35.535 | 318 | 196 | 2 | 11 | 319 | 4 | 321 | 1.01e-62 | 210 |
| MsG0680033960.01.T01 | AT1G14480 | 30.556 | 432 | 225 | 8 | 11 | 439 | 4 | 363 | 1.11e-48 | 172 |
| MsG0680033960.01.T01 | AT5G51160 | 25.057 | 439 | 262 | 10 | 44 | 453 | 13 | 413 | 3.56e-30 | 122 |
| MsG0680033960.01.T01 | AT5G15500 | 34.928 | 209 | 128 | 4 | 113 | 313 | 1 | 209 | 2.74e-29 | 118 |
| MsG0680033960.01.T01 | AT4G03500 | 30.222 | 225 | 119 | 6 | 101 | 312 | 280 | 479 | 4.56e-18 | 87.4 |
| MsG0680033960.01.T01 | AT4G03500 | 30.222 | 225 | 119 | 6 | 101 | 312 | 280 | 479 | 4.56e-18 | 87.4 |
| MsG0680033960.01.T01 | AT4G03500 | 30.222 | 225 | 119 | 6 | 101 | 312 | 303 | 502 | 5.39e-18 | 87.4 |
| MsG0680033960.01.T01 | AT4G03460 | 32.018 | 228 | 106 | 8 | 103 | 312 | 290 | 486 | 5.35e-17 | 84.0 |
| MsG0680033960.01.T01 | AT4G03460 | 32.444 | 225 | 109 | 8 | 103 | 312 | 258 | 454 | 5.98e-17 | 84.0 |
| MsG0680033960.01.T01 | AT1G03670 | 29.150 | 247 | 122 | 9 | 91 | 318 | 266 | 478 | 3.65e-15 | 78.6 |
| MsG0680033960.01.T01 | AT5G54700 | 26.423 | 246 | 139 | 8 | 104 | 346 | 23 | 229 | 2.06e-14 | 74.7 |
| MsG0680033960.01.T01 | AT1G10340 | 27.119 | 236 | 132 | 5 | 112 | 315 | 205 | 432 | 2.49e-14 | 75.9 |
| MsG0680033960.01.T01 | AT1G10340 | 27.119 | 236 | 132 | 5 | 112 | 315 | 201 | 428 | 3.14e-14 | 75.5 |
| MsG0680033960.01.T01 | AT2G01680 | 26.066 | 211 | 136 | 3 | 47 | 249 | 97 | 295 | 1.59e-13 | 73.2 |
| MsG0680033960.01.T01 | AT1G34050 | 23.077 | 260 | 178 | 4 | 68 | 315 | 174 | 423 | 1.39e-12 | 70.1 |
| MsG0680033960.01.T01 | AT2G31820 | 26.984 | 126 | 90 | 1 | 3 | 128 | 253 | 376 | 8.96e-11 | 64.7 |
Find 104 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAATGCTGGAGCAAAATT+TGG | 0.180790 | 6:-77424795 | MsG0680033960.01.T01:CDS |
| AAAATTGAGCACAAAGAATT+TGG | 0.181240 | 6:-77424871 | MsG0680033960.01.T01:CDS |
| TTTACATACTGCTGCATCTA+TGG | 0.232324 | 6:-77425644 | MsG0680033960.01.T01:CDS |
| TTCTGTTATGCTGTACATTA+TGG | 0.234959 | 6:-77424206 | MsG0680033960.01.T01:CDS |
| CAATCGGTTAAAACAATATA+TGG | 0.248378 | 6:+77425771 | None:intergenic |
| ACCGACCTCCCAACATTTCC+TGG | 0.306422 | 6:+77424474 | None:intergenic |
| AGCGACCTCCCAACATTTCC+TGG | 0.319742 | 6:+77424522 | None:intergenic |
| AAAGACCTTGTTAGAGTTCA+AGG | 0.330305 | 6:-77425481 | MsG0680033960.01.T01:CDS |
| TACCATAATTGATACCAAAA+AGG | 0.336442 | 6:+77424404 | None:intergenic |
| TTTGCAATTGTGAGAGGATC+TGG | 0.351979 | 6:+77424762 | None:intergenic |
| TCTGTTATGCTGTACATTAT+GGG | 0.364407 | 6:-77424205 | MsG0680033960.01.T01:CDS |
| GTCTTGTCAGCATATGCTTT+CGG | 0.372883 | 6:-77424453 | MsG0680033960.01.T01:CDS |
| AGCGAGCCACCATACTCTTT+TGG | 0.373279 | 6:+77425518 | None:intergenic |
| TATTGAAACCTTCATTTGCT+TGG | 0.374552 | 6:-77425591 | MsG0680033960.01.T01:CDS |
| ATTGACTCTCGTGGTTTGTT+TGG | 0.375695 | 6:-77424235 | MsG0680033960.01.T01:CDS |
| CTCAGATCAAATAAACAAAT+AGG | 0.389289 | 6:-77425280 | MsG0680033960.01.T01:CDS |
| CTTCATTATGCAAGTCAAAC+TGG | 0.393761 | 6:-77425439 | MsG0680033960.01.T01:CDS |
| TTAACATGTCGCACATATAC+AGG | 0.396732 | 6:+77424721 | None:intergenic |
| AAACTAAAATTCTAAACAAA+AGG | 0.397606 | 6:-77425243 | MsG0680033960.01.T01:CDS |
| TCAAGATGATACATCAATCT+TGG | 0.413760 | 6:-77425701 | MsG0680033960.01.T01:CDS |
| AGACTGCCTATGTACCCCTT+GGG | 0.428583 | 6:+77424366 | None:intergenic |
| AGCACAGGCACTTCGATTGT+TGG | 0.432927 | 6:-77424907 | MsG0680033960.01.T01:intron |
| GCAACACGACCAAAAGAGTA+TGG | 0.443459 | 6:-77425527 | MsG0680033960.01.T01:CDS |
| TGTAAAGGAGTTTCAACAAA+TGG | 0.448723 | 6:+77425661 | None:intergenic |
| CTTCAGCTGCAGCTTTCAAT+CGG | 0.457306 | 6:+77425755 | None:intergenic |
| TCTTCTATCCCAGGAAATGT+TGG | 0.462914 | 6:-77424483 | MsG0680033960.01.T01:CDS |
| CTCATTTGATAAATTCCAGC+AGG | 0.463340 | 6:+77424591 | None:intergenic |
| TATGCTCTTGTTCTCTTCTG+TGG | 0.463721 | 6:+77424821 | None:intergenic |
| CCCTTCGAGTACTTGTTAGC+TGG | 0.468637 | 6:-77425303 | MsG0680033960.01.T01:CDS |
| TTTAGTTTCCAAGCAAATGA+AGG | 0.469820 | 6:+77425583 | None:intergenic |
| CAAGCCACAAAACTAGTCAT+TGG | 0.477833 | 6:+77424333 | None:intergenic |
| CTGTGATATACTATTTCTAA+AGG | 0.478274 | 6:+77424686 | None:intergenic |
| GTTCAAAAGAGCCATGGAAA+TGG | 0.479363 | 6:+77424272 | None:intergenic |
| TTGAAAGCTGCAGCTGAAGC+AGG | 0.480701 | 6:-77425751 | MsG0680033960.01.T01:CDS |
| CCATGGAAATGGCATATGTA+GGG | 0.481274 | 6:+77424283 | None:intergenic |
| TTCGATTGTTGGTAAAGACT+TGG | 0.482548 | 6:-77424896 | MsG0680033960.01.T01:CDS |
| CTGTTATGCTGTACATTATG+GGG | 0.488502 | 6:-77424204 | MsG0680033960.01.T01:CDS |
| ACAAATAGGTGCTAGAAAGC+TGG | 0.490221 | 6:-77425266 | MsG0680033960.01.T01:CDS |
| TCTTCTACCCCAGGAAATGT+TGG | 0.490972 | 6:-77424531 | MsG0680033960.01.T01:CDS |
| CTTGTTAGAGTTCAAGGAAG+AGG | 0.493464 | 6:-77425475 | MsG0680033960.01.T01:CDS |
| AAGAGCATATTAATCAATGC+TGG | 0.495327 | 6:-77424807 | MsG0680033960.01.T01:CDS |
| TCCTCCAACTCTTCTATCCC+AGG | 0.498418 | 6:-77424492 | MsG0680033960.01.T01:CDS |
| ATTTCCTGGGGTAGAAGAGT+TGG | 0.499458 | 6:+77424536 | None:intergenic |
| AACTAAAATTCTAAACAAAA+GGG | 0.504563 | 6:-77425242 | MsG0680033960.01.T01:CDS |
| CTTCTATCCCAGGAAATGTT+GGG | 0.507210 | 6:-77424482 | MsG0680033960.01.T01:CDS |
| TATCAAGAATGAACAGTATG+AGG | 0.507363 | 6:-77425326 | MsG0680033960.01.T01:CDS |
| CTTCTACCCCAGGAAATGTT+GGG | 0.510968 | 6:-77424530 | MsG0680033960.01.T01:CDS |
| CGGAGAAACACTGAAGAAGA+TGG | 0.515072 | 6:-77424159 | MsG0680033960.01.T01:CDS |
| ATTTCCTGGGATAGAAGAGT+TGG | 0.516359 | 6:+77424488 | None:intergenic |
| CCTCGCAGTCAAGCATTCAA+TGG | 0.520970 | 6:+77425372 | None:intergenic |
| CACAGGATGAACGCAACACT+TGG | 0.521653 | 6:-77424668 | MsG0680033960.01.T01:CDS |
| GTCATTATCATTGACTCTCG+TGG | 0.522075 | 6:-77424244 | MsG0680033960.01.T01:CDS |
| GGAATTTATCAAATGAGTGC+TGG | 0.523889 | 6:-77424585 | MsG0680033960.01.T01:CDS |
| TAGACTGCCTATGTACCCCT+TGG | 0.523912 | 6:+77424365 | None:intergenic |
| GCCATGGAAATGGCATATGT+AGG | 0.525662 | 6:+77424282 | None:intergenic |
| TCCTGGGATAGAAGAGTTGG+AGG | 0.529043 | 6:+77424491 | None:intergenic |
| TCCTGGGGTAGAAGAGTTGG+AGG | 0.529743 | 6:+77424539 | None:intergenic |
| ATTGAGCACAAAGAATTTGG+AGG | 0.532165 | 6:-77424868 | MsG0680033960.01.T01:CDS |
| TTACATACTGCTGCATCTAT+GGG | 0.537925 | 6:-77425643 | MsG0680033960.01.T01:CDS |
| ATACTAGGTATCTCTACAAT+CGG | 0.540225 | 6:-77424179 | MsG0680033960.01.T01:CDS |
| TTTGACTTGCATAATGAAGA+GGG | 0.540366 | 6:+77425443 | None:intergenic |
| TTGCAATTGTGAGAGGATCT+GGG | 0.543064 | 6:+77424763 | None:intergenic |
| TTTCAATATCATAATTTCAG+AGG | 0.544024 | 6:+77425606 | None:intergenic |
| GTCAAGCATTCAATGGACTC+TGG | 0.545506 | 6:+77425379 | None:intergenic |
| CCCAGGAAATGTTGGGAGGT+CGG | 0.546006 | 6:-77424475 | MsG0680033960.01.T01:CDS |
| ATTAGATTTGCAATTGTGAG+AGG | 0.551246 | 6:+77424756 | None:intergenic |
| CTTTAGAAATAGTATATCAC+AGG | 0.553397 | 6:-77424685 | MsG0680033960.01.T01:CDS |
| AGTTAGTACTGATTGATAAG+TGG | 0.553475 | 6:+77424617 | None:intergenic |
| GTGTTGCATTGCGAGATGGA+TGG | 0.554849 | 6:+77425543 | None:intergenic |
| GAGTCAATGATAATGACAAA+AGG | 0.556907 | 6:+77424250 | None:intergenic |
| TCCTCCAACTCTTCTACCCC+AGG | 0.558974 | 6:-77424540 | MsG0680033960.01.T01:CDS |
| GCGACCTCCCAACATTTCCT+GGG | 0.559550 | 6:+77424523 | None:intergenic |
| TGTTGCATTGCGAGATGGAT+GGG | 0.563926 | 6:+77425544 | None:intergenic |
| GTTAGAGTTCAAGGAAGAGG+AGG | 0.564832 | 6:-77425472 | MsG0680033960.01.T01:CDS |
| CTAAACAAAAGGGACGAGGC+AGG | 0.569034 | 6:-77425232 | MsG0680033960.01.T01:CDS |
| CAAAAGGTTCAAAAGAGCCA+TGG | 0.573721 | 6:+77424266 | None:intergenic |
| CCCTACATATGCCATTTCCA+TGG | 0.578432 | 6:-77424283 | MsG0680033960.01.T01:CDS |
| GACTGCCTATGTACCCCTTG+GGG | 0.579807 | 6:+77424367 | None:intergenic |
| GTTTGACTTGCATAATGAAG+AGG | 0.585387 | 6:+77425442 | None:intergenic |
| GGTCGTGTTGCATTGCGAGA+TGG | 0.589527 | 6:+77425539 | None:intergenic |
| TGTTATGCTGTACATTATGG+GGG | 0.590444 | 6:-77424203 | MsG0680033960.01.T01:CDS |
| ATAGATGCAGCAGTATGTAA+AGG | 0.591635 | 6:+77425646 | None:intergenic |
| AGCGCTAAATAGTGAACCAC+AGG | 0.592875 | 6:-77425188 | MsG0680033960.01.T01:intron |
| CTCTTCCTTGAACTCTAACA+AGG | 0.596189 | 6:+77425476 | None:intergenic |
| GCCAGCTAACAAGTACTCGA+AGG | 0.599951 | 6:+77425302 | None:intergenic |
| CCATTGAATGCTTGACTGCG+AGG | 0.608334 | 6:-77425372 | MsG0680033960.01.T01:CDS |
| TCATTTGATAAATTCCAGCA+GGG | 0.616951 | 6:+77424592 | None:intergenic |
| CCGACCTCCCAACATTTCCT+GGG | 0.625238 | 6:+77424475 | None:intergenic |
| CCAGCTAACAAGTACTCGAA+GGG | 0.631689 | 6:+77425303 | None:intergenic |
| TTGACTTGCATAATGAAGAG+GGG | 0.634804 | 6:+77425444 | None:intergenic |
| TTATGCAAGTCAAACTGGTG+AGG | 0.636124 | 6:-77425434 | MsG0680033960.01.T01:CDS |
| GCTTGGAAACTAAATCCACA+AGG | 0.641089 | 6:-77425574 | MsG0680033960.01.T01:CDS |
| CATTTGATAAATTCCAGCAG+GGG | 0.645442 | 6:+77424593 | None:intergenic |
| ATTTGATAAATTCCAGCAGG+GGG | 0.647784 | 6:+77424594 | None:intergenic |
| AATTCTAAACAAAAGGGACG+AGG | 0.648350 | 6:-77425236 | MsG0680033960.01.T01:CDS |
| CATGGAAATGGCATATGTAG+GGG | 0.651289 | 6:+77424284 | None:intergenic |
| TAACATGTCGCACATATACA+GGG | 0.652237 | 6:+77424722 | None:intergenic |
| ACTGCCTATGTACCCCTTGG+GGG | 0.656445 | 6:+77424368 | None:intergenic |
| CGACCTCCCAACATTTCCTG+GGG | 0.682861 | 6:+77424524 | None:intergenic |
| CTACCCCAGGAAATGTTGGG+AGG | 0.683911 | 6:-77424527 | MsG0680033960.01.T01:CDS |
| CTATCCCAGGAAATGTTGGG+AGG | 0.695626 | 6:-77424479 | MsG0680033960.01.T01:CDS |
| TGGATGGGACTGAATCCTTG+TGG | 0.698413 | 6:+77425559 | None:intergenic |
| ACACGACCAAAAGAGTATGG+TGG | 0.710545 | 6:-77425524 | MsG0680033960.01.T01:CDS |
| AGAAACACTGAAGAAGATGG+CGG | 0.714176 | 6:-77424156 | MsG0680033960.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACTAAAATTCTAAACAAA+AGG | - | Chr6:77424693-77424712 | MsG0680033960.01.T01:CDS | 15.0% |
| !! | AACTAAAATTCTAAACAAAA+GGG | - | Chr6:77424694-77424713 | MsG0680033960.01.T01:CDS | 15.0% |
| !! | ATTAGTCAAGCTAAAAAAAT+TGG | - | Chr6:77424808-77424827 | MsG0680033960.01.T01:CDS | 20.0% |
| !! | TTAGTCAAGCTAAAAAAATT+GGG | - | Chr6:77424809-77424828 | MsG0680033960.01.T01:CDS | 20.0% |
| !! | TTCAATAAAATCAGTTTGTA+GGG | - | Chr6:77424840-77424859 | MsG0680033960.01.T01:CDS | 20.0% |
| !! | TTTCAATATCATAATTTCAG+AGG | + | Chr6:77424333-77424352 | None:intergenic | 20.0% |
| !!! | TTTTAGCTTGACTAATATAA+AGG | + | Chr6:77424804-77424823 | None:intergenic | 20.0% |
| ! | AAAATTGAGCACAAAGAATT+TGG | - | Chr6:77425065-77425084 | MsG0680033960.01.T01:intron | 25.0% |
| ! | CAATCGGTTAAAACAATATA+TGG | + | Chr6:77424168-77424187 | None:intergenic | 25.0% |
| ! | CTCAGATCAAATAAACAAAT+AGG | - | Chr6:77424656-77424675 | MsG0680033960.01.T01:CDS | 25.0% |
| ! | CTTCAATAAAATCAGTTTGT+AGG | - | Chr6:77424839-77424858 | MsG0680033960.01.T01:CDS | 25.0% |
| ! | TACCATAATTGATACCAAAA+AGG | + | Chr6:77425535-77425554 | None:intergenic | 25.0% |
| !! | CTTTAGAAATAGTATATCAC+AGG | - | Chr6:77425251-77425270 | MsG0680033960.01.T01:CDS | 25.0% |
| !! | TAATTATTACTTGATAGCAC+AGG | - | Chr6:77425014-77425033 | MsG0680033960.01.T01:intron | 25.0% |
| !!! | CTGTGATATACTATTTCTAA+AGG | + | Chr6:77425253-77425272 | None:intergenic | 25.0% |
| !!! | TTCCTTTTTGGTATCAATTA+TGG | - | Chr6:77425530-77425549 | MsG0680033960.01.T01:CDS | 25.0% |
| !!! | TTTGTTTTTATGCGTGAATA+TGG | - | Chr6:77425506-77425525 | MsG0680033960.01.T01:CDS | 25.0% |
| ACTAATATAAAGGAGACATG+TGG | + | Chr6:77424794-77424813 | None:intergenic | 30.0% | |
| ATACTAGGTATCTCTACAAT+CGG | - | Chr6:77425757-77425776 | MsG0680033960.01.T01:CDS | 30.0% | |
| ATTAGATTTGCAATTGTGAG+AGG | + | Chr6:77425183-77425202 | None:intergenic | 30.0% | |
| TATCAAGAATGAACAGTATG+AGG | - | Chr6:77424610-77424629 | MsG0680033960.01.T01:CDS | 30.0% | |
| TATTGAAACCTTCATTTGCT+TGG | - | Chr6:77424345-77424364 | MsG0680033960.01.T01:CDS | 30.0% | |
| TCAAGATGATACATCAATCT+TGG | - | Chr6:77424235-77424254 | MsG0680033960.01.T01:CDS | 30.0% | |
| TCATTTGATAAATTCCAGCA+GGG | + | Chr6:77425347-77425366 | None:intergenic | 30.0% | |
| TCTGTTATGCTGTACATTAT+GGG | - | Chr6:77425731-77425750 | MsG0680033960.01.T01:CDS | 30.0% | |
| TGTAAAGGAGTTTCAACAAA+TGG | + | Chr6:77424278-77424297 | None:intergenic | 30.0% | |
| TTCTGTTATGCTGTACATTA+TGG | - | Chr6:77425730-77425749 | MsG0680033960.01.T01:CDS | 30.0% | |
| ! | AAGAGCATATTAATCAATGC+TGG | - | Chr6:77425129-77425148 | MsG0680033960.01.T01:intron | 30.0% |
| ! | GAGTCAATGATAATGACAAA+AGG | + | Chr6:77425689-77425708 | None:intergenic | 30.0% |
| ! | TAGTTATTACTTGATAGCAC+AGG | - | Chr6:77424968-77424987 | MsG0680033960.01.T01:intron | 30.0% |
| ! | TTTAGTTTCCAAGCAAATGA+AGG | + | Chr6:77424356-77424375 | None:intergenic | 30.0% |
| !! | AGTTAGTACTGATTGATAAG+TGG | + | Chr6:77425322-77425341 | None:intergenic | 30.0% |
| !! | TTTGACTTGCATAATGAAGA+GGG | + | Chr6:77424496-77424515 | None:intergenic | 30.0% |
| !!! | AATTCCAATGACTAGTTTTG+TGG | - | Chr6:77425599-77425618 | MsG0680033960.01.T01:CDS | 30.0% |
| AAAGACCTTGTTAGAGTTCA+AGG | - | Chr6:77424455-77424474 | MsG0680033960.01.T01:CDS | 35.0% | |
| AATATATATTCTGACCCCCA+AGG | - | Chr6:77425554-77425573 | MsG0680033960.01.T01:CDS | 35.0% | |
| AATTCTAAACAAAAGGGACG+AGG | - | Chr6:77424700-77424719 | MsG0680033960.01.T01:CDS | 35.0% | |
| ATAGATGCAGCAGTATGTAA+AGG | + | Chr6:77424293-77424312 | None:intergenic | 35.0% | |
| ATATATATTCTGACCCCCAA+GGG | - | Chr6:77425555-77425574 | MsG0680033960.01.T01:CDS | 35.0% | |
| ATCAATGCTGGAGCAAAATT+TGG | - | Chr6:77425141-77425160 | MsG0680033960.01.T01:intron | 35.0% | |
| ATTGAGCACAAAGAATTTGG+AGG | - | Chr6:77425068-77425087 | MsG0680033960.01.T01:intron | 35.0% | |
| ATTTGATAAATTCCAGCAGG+GGG | + | Chr6:77425345-77425364 | None:intergenic | 35.0% | |
| CATTTGATAAATTCCAGCAG+GGG | + | Chr6:77425346-77425365 | None:intergenic | 35.0% | |
| CTCATTTGATAAATTCCAGC+AGG | + | Chr6:77425348-77425367 | None:intergenic | 35.0% | |
| CTGTTATGCTGTACATTATG+GGG | - | Chr6:77425732-77425751 | MsG0680033960.01.T01:CDS | 35.0% | |
| CTTCATTATGCAAGTCAAAC+TGG | - | Chr6:77424497-77424516 | MsG0680033960.01.T01:CDS | 35.0% | |
| GGAATTTATCAAATGAGTGC+TGG | - | Chr6:77425351-77425370 | MsG0680033960.01.T01:CDS | 35.0% | |
| TAACATGTCGCACATATACA+GGG | + | Chr6:77425217-77425236 | None:intergenic | 35.0% | |
| TGTTATGCTGTACATTATGG+GGG | - | Chr6:77425733-77425752 | MsG0680033960.01.T01:CDS | 35.0% | |
| TTAACATGTCGCACATATAC+AGG | + | Chr6:77425218-77425237 | None:intergenic | 35.0% | |
| TTACATACTGCTGCATCTAT+GGG | - | Chr6:77424293-77424312 | MsG0680033960.01.T01:CDS | 35.0% | |
| TTTACATACTGCTGCATCTA+TGG | - | Chr6:77424292-77424311 | MsG0680033960.01.T01:CDS | 35.0% | |
| ! | CGTGAATATGGTTTCCTTTT+TGG | - | Chr6:77425518-77425537 | MsG0680033960.01.T01:CDS | 35.0% |
| ! | TTCGATTGTTGGTAAAGACT+TGG | - | Chr6:77425040-77425059 | MsG0680033960.01.T01:intron | 35.0% |
| !! | GTTTGACTTGCATAATGAAG+AGG | + | Chr6:77424497-77424516 | None:intergenic | 35.0% |
| !! | TTGACTTGCATAATGAAGAG+GGG | + | Chr6:77424495-77424514 | None:intergenic | 35.0% |
| ACAAATAGGTGCTAGAAAGC+TGG | - | Chr6:77424670-77424689 | MsG0680033960.01.T01:CDS | 40.0% | |
| AGAAACACTGAAGAAGATGG+CGG | - | Chr6:77425780-77425799 | MsG0680033960.01.T01:CDS | 40.0% | |
| ATTTCCTGGGATAGAAGAGT+TGG | + | Chr6:77425451-77425470 | None:intergenic | 40.0% | |
| CAAAAGGTTCAAAAGAGCCA+TGG | + | Chr6:77425673-77425692 | None:intergenic | 40.0% | |
| CAAGCCACAAAACTAGTCAT+TGG | + | Chr6:77425606-77425625 | None:intergenic | 40.0% | |
| CATGGAAATGGCATATGTAG+GGG | + | Chr6:77425655-77425674 | None:intergenic | 40.0% | |
| CCATGGAAATGGCATATGTA+GGG | + | Chr6:77425656-77425675 | None:intergenic | 40.0% | |
| CTCTTCCTTGAACTCTAACA+AGG | + | Chr6:77424463-77424482 | None:intergenic | 40.0% | |
| CTTCTATCCCAGGAAATGTT+GGG | - | Chr6:77425454-77425473 | MsG0680033960.01.T01:CDS | 40.0% | |
| CTTGTTAGAGTTCAAGGAAG+AGG | - | Chr6:77424461-77424480 | MsG0680033960.01.T01:CDS | 40.0% | |
| GCTTGGAAACTAAATCCACA+AGG | - | Chr6:77424362-77424381 | MsG0680033960.01.T01:CDS | 40.0% | |
| GTCTTGTCAGCATATGCTTT+CGG | - | Chr6:77425483-77425502 | MsG0680033960.01.T01:CDS | 40.0% | |
| GTTCAAAAGAGCCATGGAAA+TGG | + | Chr6:77425667-77425686 | None:intergenic | 40.0% | |
| TATATATTCTGACCCCCAAG+GGG | - | Chr6:77425556-77425575 | MsG0680033960.01.T01:CDS | 40.0% | |
| TATGCTCTTGTTCTCTTCTG+TGG | + | Chr6:77425118-77425137 | None:intergenic | 40.0% | |
| TCTTCTATCCCAGGAAATGT+TGG | - | Chr6:77425453-77425472 | MsG0680033960.01.T01:CDS | 40.0% | |
| TTATGCAAGTCAAACTGGTG+AGG | - | Chr6:77424502-77424521 | MsG0680033960.01.T01:CDS | 40.0% | |
| TTGCAATTGTGAGAGGATCT+GGG | + | Chr6:77425176-77425195 | None:intergenic | 40.0% | |
| TTTGCAATTGTGAGAGGATC+TGG | + | Chr6:77425177-77425196 | None:intergenic | 40.0% | |
| ! | ATGTGGTTTCAAGCATTGCT+AGG | + | Chr6:77424777-77424796 | None:intergenic | 40.0% |
| ! | GTACATTATGGGGGTATACT+AGG | - | Chr6:77425742-77425761 | MsG0680033960.01.T01:CDS | 40.0% |
| !! | ATTGACTCTCGTGGTTTGTT+TGG | - | Chr6:77425701-77425720 | MsG0680033960.01.T01:CDS | 40.0% |
| !! | GTCATTATCATTGACTCTCG+TGG | - | Chr6:77425692-77425711 | MsG0680033960.01.T01:CDS | 40.0% |
| AGCGCTAAATAGTGAACCAC+AGG | - | Chr6:77424748-77424767 | MsG0680033960.01.T01:CDS | 45.0% | |
| ATTTCCTGGGGTAGAAGAGT+TGG | + | Chr6:77425403-77425422 | None:intergenic | 45.0% | |
| CCAGCTAACAAGTACTCGAA+GGG | + | Chr6:77424636-77424655 | None:intergenic | 45.0% | |
| CGGAGAAACACTGAAGAAGA+TGG | - | Chr6:77425777-77425796 | MsG0680033960.01.T01:CDS | 45.0% | |
| CTTCAGCTGCAGCTTTCAAT+CGG | + | Chr6:77424184-77424203 | None:intergenic | 45.0% | |
| CTTCTACCCCAGGAAATGTT+GGG | - | Chr6:77425406-77425425 | MsG0680033960.01.T01:CDS | 45.0% | |
| GCAACACGACCAAAAGAGTA+TGG | - | Chr6:77424409-77424428 | MsG0680033960.01.T01:CDS | 45.0% | |
| GCCATGGAAATGGCATATGT+AGG | + | Chr6:77425657-77425676 | None:intergenic | 45.0% | |
| GTTAGAGTTCAAGGAAGAGG+AGG | - | Chr6:77424464-77424483 | MsG0680033960.01.T01:CDS | 45.0% | |
| TCTTCTACCCCAGGAAATGT+TGG | - | Chr6:77425405-77425424 | MsG0680033960.01.T01:CDS | 45.0% | |
| TGTTGCATTGCGAGATGGAT+GGG | + | Chr6:77424395-77424414 | None:intergenic | 45.0% | |
| ! | AAGCATTGCTAGGTTACCTG+TGG | + | Chr6:77424767-77424786 | None:intergenic | 45.0% |
| ! | ACACGACCAAAAGAGTATGG+TGG | - | Chr6:77424412-77424431 | MsG0680033960.01.T01:CDS | 45.0% |
| ! | CCCTACATATGCCATTTCCA+TGG | - | Chr6:77425653-77425672 | MsG0680033960.01.T01:CDS | 45.0% |
| ! | GTCAAGCATTCAATGGACTC+TGG | + | Chr6:77424560-77424579 | None:intergenic | 45.0% |
| AGACTGCCTATGTACCCCTT+GGG | + | Chr6:77425573-77425592 | None:intergenic | 50.0% | |
| AGCACAGGCACTTCGATTGT+TGG | - | Chr6:77424983-77425002 | MsG0680033960.01.T01:intron | 50.0% | |
| CACAGGATGAACGCAACACT+TGG | - | Chr6:77425268-77425287 | MsG0680033960.01.T01:CDS | 50.0% | |
| CCATTGAATGCTTGACTGCG+AGG | - | Chr6:77424564-77424583 | MsG0680033960.01.T01:CDS | 50.0% | |
| CCTCGCAGTCAAGCATTCAA+TGG | + | Chr6:77424567-77424586 | None:intergenic | 50.0% | |
| CTAAACAAAAGGGACGAGGC+AGG | - | Chr6:77424704-77424723 | MsG0680033960.01.T01:CDS | 50.0% | |
| CTATCCCAGGAAATGTTGGG+AGG | - | Chr6:77425457-77425476 | MsG0680033960.01.T01:CDS | 50.0% | |
| GCCAGCTAACAAGTACTCGA+AGG | + | Chr6:77424637-77424656 | None:intergenic | 50.0% | |
| GTGTTGCATTGCGAGATGGA+TGG | + | Chr6:77424396-77424415 | None:intergenic | 50.0% | |
| TAGACTGCCTATGTACCCCT+TGG | + | Chr6:77425574-77425593 | None:intergenic | 50.0% | |
| TCCTCCAACTCTTCTATCCC+AGG | - | Chr6:77425444-77425463 | MsG0680033960.01.T01:CDS | 50.0% | |
| TCCTGGGATAGAAGAGTTGG+AGG | + | Chr6:77425448-77425467 | None:intergenic | 50.0% | |
| TGGATGGGACTGAATCCTTG+TGG | + | Chr6:77424380-77424399 | None:intergenic | 50.0% | |
| TTGAAAGCTGCAGCTGAAGC+AGG | - | Chr6:77424185-77424204 | MsG0680033960.01.T01:CDS | 50.0% | |
| ! | AGCGAGCCACCATACTCTTT+TGG | + | Chr6:77424421-77424440 | None:intergenic | 50.0% |
| ! | CCCTTCGAGTACTTGTTAGC+TGG | - | Chr6:77424633-77424652 | MsG0680033960.01.T01:CDS | 50.0% |
| ACCGACCTCCCAACATTTCC+TGG | + | Chr6:77425465-77425484 | None:intergenic | 55.0% | |
| ACTGCCTATGTACCCCTTGG+GGG | + | Chr6:77425571-77425590 | None:intergenic | 55.0% | |
| AGCGACCTCCCAACATTTCC+TGG | + | Chr6:77425417-77425436 | None:intergenic | 55.0% | |
| CCCAGGAAATGTTGGGAGGT+CGG | - | Chr6:77425413-77425432 | MsG0680033960.01.T01:CDS | 55.0% | |
| CCGACCTCCCAACATTTCCT+GGG | + | Chr6:77425464-77425483 | None:intergenic | 55.0% | |
| CGACCTCCCAACATTTCCTG+GGG | + | Chr6:77425415-77425434 | None:intergenic | 55.0% | |
| CTACCCCAGGAAATGTTGGG+AGG | - | Chr6:77425409-77425428 | MsG0680033960.01.T01:CDS | 55.0% | |
| GACTGCCTATGTACCCCTTG+GGG | + | Chr6:77425572-77425591 | None:intergenic | 55.0% | |
| GCGACCTCCCAACATTTCCT+GGG | + | Chr6:77425416-77425435 | None:intergenic | 55.0% | |
| GGTCGTGTTGCATTGCGAGA+TGG | + | Chr6:77424400-77424419 | None:intergenic | 55.0% | |
| TCAGTACTAACTCCCCCTGC+TGG | - | Chr6:77425330-77425349 | MsG0680033960.01.T01:CDS | 55.0% | |
| TCCTCCAACTCTTCTACCCC+AGG | - | Chr6:77425396-77425415 | MsG0680033960.01.T01:CDS | 55.0% | |
| TCCTGGGGTAGAAGAGTTGG+AGG | + | Chr6:77425400-77425419 | None:intergenic | 55.0% | |
| ! | CTGACCCCCAAGGGGTACAT+AGG | - | Chr6:77425564-77425583 | MsG0680033960.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 77424152 | 77425806 | 77424152 | ID=MsG0680033960.01;Name=MsG0680033960.01 |
| Chr6 | mRNA | 77424152 | 77425806 | 77424152 | ID=MsG0680033960.01.T01;Parent=MsG0680033960.01;Name=MsG0680033960.01.T01;_AED=0.14;_eAED=0.19;_QI=0|0|0|1|1|1|2|0|462 |
| Chr6 | exon | 77425189 | 77425806 | 77425189 | ID=MsG0680033960.01.T01:exon:534;Parent=MsG0680033960.01.T01 |
| Chr6 | exon | 77424152 | 77424922 | 77424152 | ID=MsG0680033960.01.T01:exon:533;Parent=MsG0680033960.01.T01 |
| Chr6 | CDS | 77425189 | 77425806 | 77425189 | ID=MsG0680033960.01.T01:cds;Parent=MsG0680033960.01.T01 |
| Chr6 | CDS | 77424152 | 77424922 | 77424152 | ID=MsG0680033960.01.T01:cds;Parent=MsG0680033960.01.T01 |
| Gene Sequence |
| Protein sequence |
