AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003343.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003343.01.T01 MTR_1g059930 94.271 384 22 0 1 384 1 384 0.0 701
MsG0180003343.01.T01 MTR_8g039620 67.907 430 131 5 1 424 1 429 0.0 553
MsG0180003343.01.T01 MTR_8g072510 61.607 448 157 7 1 442 1 439 0.0 515
MsG0180003343.01.T01 MTR_8g068990 66.491 379 109 4 1 376 1 364 3.51e-172 491
MsG0180003343.01.T01 MTR_3g016210 58.465 443 158 6 1 426 1 434 5.03e-172 490
MsG0180003343.01.T01 MTR_7g021090 60.302 398 144 5 1 394 1 388 2.05e-162 464
MsG0180003343.01.T01 MTR_8g073260 54.670 439 189 6 11 443 10 444 2.10e-162 466
MsG0180003343.01.T01 MTR_8g062410 60.280 428 154 6 1 424 1 416 2.56e-161 463
MsG0180003343.01.T01 MTR_8g040930 63.298 376 133 3 54 426 1 374 8.10e-161 459
MsG0180003343.01.T01 MTR_8g041240 63.298 376 133 3 54 426 1 374 8.10e-161 459
MsG0180003343.01.T01 MTR_8g069880 55.708 438 184 6 12 444 7 439 1.59e-154 446
MsG0180003343.01.T01 MTR_7g451420 65.595 311 107 0 9 319 6 316 2.20e-143 412
MsG0180003343.01.T01 MTR_8g066670 53.089 437 198 5 9 443 1072 1503 3.12e-138 432
MsG0180003343.01.T01 MTR_8g467780 51.708 439 197 5 10 433 9 447 1.10e-136 400
MsG0180003343.01.T01 MTR_3g105650 45.185 405 186 4 12 407 5 382 4.82e-112 336
MsG0180003343.01.T01 MTR_8g073275 44.176 455 175 9 54 440 1 444 2.93e-105 320
MsG0180003343.01.T01 MTR_1g069110 24.510 408 266 10 12 407 18 395 5.05e-27 113
MsG0180003343.01.T01 MTR_7g117620 26.357 387 224 11 47 402 119 475 5.47e-24 105
MsG0180003343.01.T01 MTR_7g099570 29.148 223 144 4 12 229 9 222 4.51e-18 87.0
MsG0180003343.01.T01 MTR_7g099580 24.746 295 173 8 24 314 24 273 4.89e-18 85.5
MsG0180003343.01.T01 MTR_1g115575 24.870 386 215 11 47 396 169 515 5.98e-18 86.7
MsG0180003343.01.T01 MTR_2g101320 27.801 241 145 5 40 262 134 363 1.28e-16 82.8
MsG0180003343.01.T01 MTR_2g101310 28.505 214 133 4 43 247 137 339 5.05e-15 77.8
MsG0180003343.01.T01 MTR_8g105260 24.173 393 221 12 47 399 101 456 6.07e-15 77.4
MsG0180003343.01.T01 MTR_2g101310 28.505 214 133 4 43 247 137 339 1.52e-14 75.9
MsG0180003343.01.T01 MTR_2g096190 23.714 447 229 16 9 423 102 468 5.69e-14 74.3
MsG0180003343.01.T01 MTR_4g062100 26.829 164 118 1 9 172 106 267 2.34e-12 69.3
MsG0180003343.01.T01 MTR_4g062100 24.728 368 214 12 45 363 71 424 1.74e-11 66.6
MsG0180003343.01.T01 MTR_7g100390 21.945 401 268 13 9 402 85 447 9.92e-12 67.4
MsG0180003343.01.T01 MTR_7g100430 23.394 436 252 16 47 440 161 556 1.83e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003343.01.T01 AT4G10720 38.249 434 228 8 11 426 4 415 6.33e-90 280
MsG0180003343.01.T01 AT4G10720 38.647 414 220 5 11 407 4 400 6.14e-87 271
MsG0180003343.01.T01 AT5G15500 35.955 445 250 9 12 439 6 432 4.05e-79 253
MsG0180003343.01.T01 AT1G14500 32.880 441 258 7 11 438 4 419 9.63e-76 243
MsG0180003343.01.T01 AT1G14480 33.557 447 256 9 11 444 4 422 1.90e-73 238
MsG0180003343.01.T01 AT5G54620 41.368 307 171 3 11 309 4 309 9.83e-73 235
MsG0180003343.01.T01 AT5G54610 37.171 304 182 3 10 306 3 304 7.96e-64 212
MsG0180003343.01.T01 AT1G14480 31.494 435 238 10 11 444 4 379 1.75e-55 189
MsG0180003343.01.T01 AT5G15500 31.395 344 201 9 113 439 1 326 3.69e-36 136
MsG0180003343.01.T01 AT5G51160 27.123 365 227 9 66 402 35 388 1.50e-31 125
MsG0180003343.01.T01 AT2G01680 24.352 386 229 11 47 399 97 452 9.37e-17 82.8
MsG0180003343.01.T01 AT3G09550 23.419 427 243 13 15 402 150 531 1.38e-15 79.3
MsG0180003343.01.T01 AT3G09550 23.419 427 243 13 15 402 150 531 1.38e-15 79.3
MsG0180003343.01.T01 AT3G09550 23.419 427 243 13 15 402 157 538 1.44e-15 79.3
MsG0180003343.01.T01 AT3G12360 25.258 388 217 12 47 399 167 516 1.61e-15 79.3
MsG0180003343.01.T01 AT3G12360 25.258 388 217 12 47 399 155 504 1.78e-15 79.0
MsG0180003343.01.T01 AT1G05640 26.990 289 173 9 47 311 191 465 4.03e-15 78.2
MsG0180003343.01.T01 AT5G54710 22.791 430 243 16 68 444 187 580 1.23e-14 76.6
MsG0180003343.01.T01 AT5G54710 22.791 430 243 16 68 444 232 625 1.33e-14 76.6
MsG0180003343.01.T01 AT5G54700 25.575 348 171 13 27 372 20 281 1.77e-14 75.9
MsG0180003343.01.T01 AT2G31820 21.907 388 233 11 47 393 227 585 3.72e-14 75.1
MsG0180003343.01.T01 AT1G10340 24.129 373 207 11 65 392 157 498 5.04e-14 74.7
MsG0180003343.01.T01 AT1G10340 24.129 373 207 11 65 392 153 494 5.29e-14 74.7
MsG0180003343.01.T01 AT1G34050 24.771 327 202 10 60 372 166 462 5.63e-13 71.2
MsG0180003343.01.T01 AT1G03670 26.609 233 150 5 89 318 264 478 7.42e-13 70.9
MsG0180003343.01.T01 AT5G60070 23.026 304 211 5 9 311 109 390 1.33e-12 70.1
MsG0180003343.01.T01 AT5G54700 25.818 275 147 10 103 372 22 244 1.85e-12 68.6
MsG0180003343.01.T01 AT4G03470 22.546 377 230 10 63 425 289 617 6.24e-12 68.2
MsG0180003343.01.T01 AT4G03450 21.753 308 190 6 14 317 229 489 2.51e-11 66.2
MsG0180003343.01.T01 AT4G03480 22.866 328 196 8 12 332 357 634 2.58e-11 66.2
MsG0180003343.01.T01 AT4G03480 22.866 328 196 8 12 332 360 637 2.70e-11 66.2
MsG0180003343.01.T01 AT4G03450 21.613 310 192 6 12 317 227 489 3.09e-11 65.9

Find 78 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAGATGATCCATACATTT+TGG 0.169438 1:+60863365 MsG0180003343.01.T01:CDS
TTTACATACTGCTGCATCTA+TGG 0.232324 1:+60863422 MsG0180003343.01.T01:CDS
AAATTTCGAGGCAAAGAATT+TGG 0.237585 1:+60864168 MsG0180003343.01.T01:CDS
AGATCAAGGGTATATTATTA+AGG 0.237990 1:+60864227 MsG0180003343.01.T01:CDS
CCTCACAGTCGCGTCTCTAA+TGG 0.269339 1:-60863694 None:intergenic
AATAATATACCCTTGATCTT+TGG 0.292485 1:-60864223 None:intergenic
AAAGAACTTGTTAGAGTTCA+AGG 0.314627 1:+60863585 MsG0180003343.01.T01:CDS
ATTGAGACACCATATTCTTT+TGG 0.322394 1:-60863548 None:intergenic
GCAAAACGGCCAAAAGAATA+TGG 0.329720 1:+60863539 MsG0180003343.01.T01:CDS
CAAGGAGGAATTTAGCTAAA+AGG 0.351134 1:-60863659 None:intergenic
GGTACTAGAAATAGTAGAAT+TGG 0.362640 1:-60864503 None:intergenic
GTCGCGTCTCTAATGGAATT+AGG 0.387959 1:-60863687 None:intergenic
CAGATTTCCCAACATTTCCT+TGG 0.392996 1:-60864525 None:intergenic
ATTTGAAACCTTCATATGCT+TGG 0.397143 1:+60863475 MsG0180003343.01.T01:CDS
CAGAGGAGCAACGCAACATT+TGG 0.406627 1:+60864371 MsG0180003343.01.T01:CDS
TAGTGCTGAAACATGCAAAA+TGG 0.428779 1:-60863862 None:intergenic
TCTATACGCTCCAAAATGTA+TGG 0.437756 1:-60863375 None:intergenic
CTTGAGCTGCTGCTTTCAAT+CGG 0.438371 1:-60863311 None:intergenic
ACAAAGAGGCGCTGTAGAGC+TGG 0.439993 1:+60863800 MsG0180003343.01.T01:CDS
GAGGCCCTTCAAGTACTTGT+TGG 0.447990 1:+60863759 MsG0180003343.01.T01:CDS
TGTAAAGGAGTTTCAACAAA+TGG 0.448723 1:-60863405 None:intergenic
GATCAAGGGTATATTATTAA+GGG 0.452003 1:+60864228 MsG0180003343.01.T01:CDS
CTAGTACCCAAGGAAATGTT+GGG 0.459401 1:+60864518 MsG0180003343.01.T01:CDS
TCTAGTACCCAAGGAAATGT+TGG 0.470208 1:+60864517 MsG0180003343.01.T01:CDS
AGATTTCCCAACATTTCCTT+GGG 0.471145 1:-60864524 None:intergenic
CCCTTCAAGTACTTGTTGGA+TGG 0.471406 1:+60863763 MsG0180003343.01.T01:CDS
AGCAAGCACTCCAAAGATCA+AGG 0.473373 1:+60864213 MsG0180003343.01.T01:CDS
CATCTTGAATTACTGTGTAT+AGG 0.475239 1:-60863350 None:intergenic
GCTTCAAACATGAACACAAA+TGG 0.484140 1:+60863273 None:intergenic
TTGACCTTAGTCTATGTGCA+AGG 0.491488 1:-60864291 None:intergenic
ATTCTATTGTTGCTAAGCAC+TGG 0.495745 1:+60864142 MsG0180003343.01.T01:CDS
GCCATCCAACAAGTACTTGA+AGG 0.504000 1:-60863764 None:intergenic
TCTAGTTTCCAAGCATATGA+AGG 0.506635 1:-60863483 None:intergenic
GTTAGAGTTCAAGGAAGAGA+AGG 0.507020 1:+60863594 MsG0180003343.01.T01:CDS
ATAATGGCGCTGGCATATGT+AGG 0.509997 1:-60864718 None:intergenic
TATTAAGAATGAACAATATG+AGG 0.510151 1:+60863740 MsG0180003343.01.T01:CDS
ATCCATCTTGCTATGCAAAA+CGG 0.514544 1:+60863525 MsG0180003343.01.T01:CDS
CATAGAGATCATATAACAAA+GGG 0.520099 1:-60864683 None:intergenic
AGCACTAAGTATTGAGCCGC+AGG 0.520492 1:+60863878 MsG0180003343.01.T01:CDS
TAATGGCGCTGGCATATGTA+GGG 0.523075 1:-60864717 None:intergenic
CTATTGTCACCGGCACTACT+CGG 0.523523 1:-60864463 None:intergenic
TGGTGTACATGCTAATGTAT+TGG 0.528013 1:+60864656 MsG0180003343.01.T01:CDS
ATGTGCAAGGGTGGGAGCAT+CGG 0.534676 1:-60864278 None:intergenic
ACTAGAAATAGTAGAATTGG+AGG 0.536264 1:-60864500 None:intergenic
TTACATACTGCTGCATCTAT+GGG 0.537925 1:+60863423 MsG0180003343.01.T01:CDS
GGAGTTTATCCGAGTAGTGC+CGG 0.539873 1:+60864454 MsG0180003343.01.T01:CDS
CTACTCGGATAAACTCCACC+AGG 0.544143 1:-60864448 None:intergenic
CCACCCTTGCACATAGACTA+AGG 0.544603 1:+60864287 MsG0180003343.01.T01:CDS
AAGGGTATATTATTAAGGGC+TGG 0.545148 1:+60864232 MsG0180003343.01.T01:CDS
AAGCACTGGTATAAATTTCG+AGG 0.550668 1:+60864156 MsG0180003343.01.T01:CDS
TGACCTTAGTCTATGTGCAA+GGG 0.552002 1:-60864290 None:intergenic
CCTTAGTCTATGTGCAAGGG+TGG 0.553944 1:-60864287 None:intergenic
TTGAAAGCAGCAGCTCAAGC+AGG 0.569138 1:+60863315 MsG0180003343.01.T01:CDS
TCTACTATTTCTAGTACCCA+AGG 0.571349 1:+60864508 MsG0180003343.01.T01:CDS
TTTGCATAGCAAGATGGATG+GGG 0.573527 1:-60863521 None:intergenic
ATAGATGCAGCAGTATGTAA+AGG 0.591635 1:-60863420 None:intergenic
TTAAACAAGAGGGACAATGC+AGG 0.597578 1:+60863834 MsG0180003343.01.T01:CDS
CCATCCAACAAGTACTTGAA+GGG 0.599499 1:-60863763 None:intergenic
ACATAGAGATCATATAACAA+AGG 0.602742 1:-60864684 None:intergenic
AAAATGAAATATTAAACAAG+AGG 0.615959 1:+60863823 MsG0180003343.01.T01:CDS
AGTGCATTGCATCACACTTG+AGG 0.622834 1:-60864632 None:intergenic
GATGTTCAAACTATTGTCAC+CGG 0.623505 1:-60864473 None:intergenic
CTTAGTCTATGTGCAAGGGT+GGG 0.632160 1:-60864286 None:intergenic
AAATGAAATATTAAACAAGA+GGG 0.634272 1:+60863824 MsG0180003343.01.T01:CDS
CTCGAAACAAATAAACAAAG+AGG 0.636797 1:+60863786 MsG0180003343.01.T01:CDS
AGTCAGAGCTGATTCATACA+TGG 0.639241 1:-60864422 None:intergenic
GCAAGCACTCCAAAGATCAA+GGG 0.646260 1:+60864214 MsG0180003343.01.T01:CDS
TAATGGAATTAGGACAAACA+AGG 0.667600 1:-60863677 None:intergenic
CCATTAGAGACGCGACTGTG+AGG 0.678764 1:+60863694 MsG0180003343.01.T01:CDS
TGGAATTAGGACAAACAAGG+AGG 0.689395 1:-60863674 None:intergenic
GCTTGGAAACTAGATCAGCA+AGG 0.691073 1:+60863492 MsG0180003343.01.T01:CDS
TACTCGGATAAACTCCACCA+GGG 0.693757 1:-60864447 None:intergenic
AATGGCGCTGGCATATGTAG+GGG 0.694216 1:-60864716 None:intergenic
TATTAGAAGTGACATGACAG+AGG 0.701142 1:+60864354 MsG0180003343.01.T01:CDS
ACTCGGATAAACTCCACCAG+GGG 0.703706 1:-60864446 None:intergenic
CTCGGATAAACTCCACCAGG+GGG 0.714977 1:-60864445 None:intergenic
CTTAATAGCAATATGCAACG+CGG 0.723250 1:-60863724 None:intergenic
AAGTGTGATGCAATGCACTG+TGG 0.783025 1:+60864636 MsG0180003343.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATGAAATATTAAACAAG+AGG + Chr1:60863823-60863842 MsG0180003343.01.T01:CDS 15.0%
!! AAATGAAATATTAAACAAGA+GGG + Chr1:60863824-60863843 MsG0180003343.01.T01:CDS 15.0%
!! ACAGATAAAAAAACAACAAA+AGG - Chr1:60864754-60864773 None:intergenic 20.0%
!! AGAAAAATTACACAAACAAA+TGG - Chr1:60864778-60864797 None:intergenic 20.0%
!! CAGATAAAAAAACAACAAAA+GGG - Chr1:60864753-60864772 None:intergenic 20.0%
!! GAAAAATTACACAAACAAAT+GGG - Chr1:60864777-60864796 None:intergenic 20.0%
!! GTTACATGTTCTTATAAAAA+GGG + Chr1:60864009-60864028 MsG0180003343.01.T01:intron 20.0%
!! TATTAAGAATGAACAATATG+AGG + Chr1:60863740-60863759 MsG0180003343.01.T01:CDS 20.0%
!! TGTTACATGTTCTTATAAAA+AGG + Chr1:60864008-60864027 MsG0180003343.01.T01:intron 20.0%
!!! TGTTGTAGTTGATATAAAAA+AGG - Chr1:60864599-60864618 None:intergenic 20.0%
! AATAATATACCCTTGATCTT+TGG - Chr1:60864226-60864245 None:intergenic 25.0%
! ACATAGAGATCATATAACAA+AGG - Chr1:60864687-60864706 None:intergenic 25.0%
! CATAGAGATCATATAACAAA+GGG - Chr1:60864686-60864705 None:intergenic 25.0%
! TATATTGCTCATTAACTACT+TGG + Chr1:60864108-60864127 MsG0180003343.01.T01:intron 25.0%
!! AGATCAAGGGTATATTATTA+AGG + Chr1:60864227-60864246 MsG0180003343.01.T01:CDS 25.0%
!! GATCAAGGGTATATTATTAA+GGG + Chr1:60864228-60864247 MsG0180003343.01.T01:CDS 25.0%
!! TGAATGCATTTTATACACAA+GGG + Chr1:60863912-60863931 MsG0180003343.01.T01:intron 25.0%
!! TTGAATGCATTTTATACACA+AGG + Chr1:60863911-60863930 MsG0180003343.01.T01:intron 25.0%
!!! AAAAGGGATTTTAGCAATAA+TGG - Chr1:60864737-60864756 None:intergenic 25.0%
AAATTTCGAGGCAAAGAATT+TGG + Chr1:60864168-60864187 MsG0180003343.01.T01:CDS 30.0%
ACTAGAAATAGTAGAATTGG+AGG - Chr1:60864503-60864522 None:intergenic 30.0%
ATTCAATGTAAGATTACCTG+CGG - Chr1:60863897-60863916 None:intergenic 30.0%
CATCTTGAATTACTGTGTAT+AGG - Chr1:60863353-60863372 None:intergenic 30.0%
CATGTTCTTATAAAAAGGGA+TGG + Chr1:60864013-60864032 MsG0180003343.01.T01:intron 30.0%
CTCGAAACAAATAAACAAAG+AGG + Chr1:60863786-60863805 MsG0180003343.01.T01:CDS 30.0%
GGTACTAGAAATAGTAGAAT+TGG - Chr1:60864506-60864525 None:intergenic 30.0%
TAATGGAATTAGGACAAACA+AGG - Chr1:60863680-60863699 None:intergenic 30.0%
TGTAAAGGAGTTTCAACAAA+TGG - Chr1:60863408-60863427 None:intergenic 30.0%
! ATTGAGACACCATATTCTTT+TGG - Chr1:60863551-60863570 None:intergenic 30.0%
! ATTTGAAACCTTCATATGCT+TGG + Chr1:60863475-60863494 MsG0180003343.01.T01:CDS 30.0%
! CTTCATTTTGCAAGTCAAAT+TGG + Chr1:60863627-60863646 MsG0180003343.01.T01:CDS 30.0%
! TCAAGATGATCCATACATTT+TGG + Chr1:60863365-60863384 MsG0180003343.01.T01:CDS 30.0%
!! AAAGAACTTGTTAGAGTTCA+AGG + Chr1:60863585-60863604 MsG0180003343.01.T01:CDS 30.0%
AGATTTCCCAACATTTCCTT+GGG - Chr1:60864527-60864546 None:intergenic 35.0%
ATAGATGCAGCAGTATGTAA+AGG - Chr1:60863423-60863442 None:intergenic 35.0%
ATTCTATTGTTGCTAAGCAC+TGG + Chr1:60864142-60864161 MsG0180003343.01.T01:CDS 35.0%
ATTGCTCATTAACTACTTGG+TGG + Chr1:60864111-60864130 MsG0180003343.01.T01:intron 35.0%
CAAGGAGGAATTTAGCTAAA+AGG - Chr1:60863662-60863681 None:intergenic 35.0%
CTTAATAGCAATATGCAACG+CGG - Chr1:60863727-60863746 None:intergenic 35.0%
GATGTTCAAACTATTGTCAC+CGG - Chr1:60864476-60864495 None:intergenic 35.0%
TATTAGAAGTGACATGACAG+AGG + Chr1:60864354-60864373 MsG0180003343.01.T01:CDS 35.0%
TCTATACGCTCCAAAATGTA+TGG - Chr1:60863378-60863397 None:intergenic 35.0%
TGGTGTACATGCTAATGTAT+TGG + Chr1:60864656-60864675 MsG0180003343.01.T01:CDS 35.0%
TTACATACTGCTGCATCTAT+GGG + Chr1:60863423-60863442 MsG0180003343.01.T01:CDS 35.0%
TTTACATACTGCTGCATCTA+TGG + Chr1:60863422-60863441 MsG0180003343.01.T01:CDS 35.0%
! AAGGGTATATTATTAAGGGC+TGG + Chr1:60864232-60864251 MsG0180003343.01.T01:CDS 35.0%
! ATCCATCTTGCTATGCAAAA+CGG + Chr1:60863525-60863544 MsG0180003343.01.T01:CDS 35.0%
! TAGTGCTGAAACATGCAAAA+TGG - Chr1:60863865-60863884 None:intergenic 35.0%
! TCTAGTTTCCAAGCATATGA+AGG - Chr1:60863486-60863505 None:intergenic 35.0%
! TGCTTTGTTGCAAGTAATTG+TGG + Chr1:60864053-60864072 MsG0180003343.01.T01:intron 35.0%
! TTTTGCAAGTCAAATTGGAG+AGG + Chr1:60863632-60863651 MsG0180003343.01.T01:CDS 35.0%
! TTTTGCATAGCAAGATGGAT+GGG - Chr1:60863525-60863544 None:intergenic 35.0%
!! AAGCACTGGTATAAATTTCG+AGG + Chr1:60864156-60864175 MsG0180003343.01.T01:CDS 35.0%
!! TCTACTATTTCTAGTACCCA+AGG + Chr1:60864508-60864527 MsG0180003343.01.T01:CDS 35.0%
CAGATTTCCCAACATTTCCT+TGG - Chr1:60864528-60864547 None:intergenic 40.0%
CCATCCAACAAGTACTTGAA+GGG - Chr1:60863766-60863785 None:intergenic 40.0%
CTAGTACCCAAGGAAATGTT+GGG + Chr1:60864518-60864537 MsG0180003343.01.T01:CDS 40.0%
GCAAAACGGCCAAAAGAATA+TGG + Chr1:60863539-60863558 MsG0180003343.01.T01:CDS 40.0%
GTTAGAGTTCAAGGAAGAGA+AGG + Chr1:60863594-60863613 MsG0180003343.01.T01:CDS 40.0%
TCTAGTACCCAAGGAAATGT+TGG + Chr1:60864517-60864536 MsG0180003343.01.T01:CDS 40.0%
TGACCTTAGTCTATGTGCAA+GGG - Chr1:60864293-60864312 None:intergenic 40.0%
TGGAATTAGGACAAACAAGG+AGG - Chr1:60863677-60863696 None:intergenic 40.0%
TTAAACAAGAGGGACAATGC+AGG + Chr1:60863834-60863853 MsG0180003343.01.T01:CDS 40.0%
TTGACCTTAGTCTATGTGCA+AGG - Chr1:60864294-60864313 None:intergenic 40.0%
TTTGCATAGCAAGATGGATG+GGG - Chr1:60863524-60863543 None:intergenic 40.0%
! AGTCAGAGCTGATTCATACA+TGG - Chr1:60864425-60864444 None:intergenic 40.0%
! GTTTTGCATAGCAAGATGGA+TGG - Chr1:60863526-60863545 None:intergenic 40.0%
!! GATTTTAGCAATAATGGCGC+TGG - Chr1:60864731-60864750 None:intergenic 40.0%
AAGTGTGATGCAATGCACTG+TGG + Chr1:60864636-60864655 MsG0180003343.01.T01:CDS 45.0%
AGCAAGCACTCCAAAGATCA+AGG + Chr1:60864213-60864232 MsG0180003343.01.T01:CDS 45.0%
AGTGCATTGCATCACACTTG+AGG - Chr1:60864635-60864654 None:intergenic 45.0%
CTTAGTCTATGTGCAAGGGT+GGG - Chr1:60864289-60864308 None:intergenic 45.0%
GCAAGCACTCCAAAGATCAA+GGG + Chr1:60864214-60864233 MsG0180003343.01.T01:CDS 45.0%
GCCATCCAACAAGTACTTGA+AGG - Chr1:60863767-60863786 None:intergenic 45.0%
GCTTGGAAACTAGATCAGCA+AGG + Chr1:60863492-60863511 MsG0180003343.01.T01:CDS 45.0%
GTCGCGTCTCTAATGGAATT+AGG - Chr1:60863690-60863709 None:intergenic 45.0%
TACTCGGATAAACTCCACCA+GGG - Chr1:60864450-60864469 None:intergenic 45.0%
! CCCTTCAAGTACTTGTTGGA+TGG + Chr1:60863763-60863782 MsG0180003343.01.T01:CDS 45.0%
!! ATAATGGCGCTGGCATATGT+AGG - Chr1:60864721-60864740 None:intergenic 45.0%
!! CTTGAGCTGCTGCTTTCAAT+CGG - Chr1:60863314-60863333 None:intergenic 45.0%
!! TAATGGCGCTGGCATATGTA+GGG - Chr1:60864720-60864739 None:intergenic 45.0%
ACTCGGATAAACTCCACCAG+GGG - Chr1:60864449-60864468 None:intergenic 50.0%
CAGAGGAGCAACGCAACATT+TGG + Chr1:60864371-60864390 MsG0180003343.01.T01:CDS 50.0%
CCACCCTTGCACATAGACTA+AGG + Chr1:60864287-60864306 MsG0180003343.01.T01:CDS 50.0%
CCTTAGTCTATGTGCAAGGG+TGG - Chr1:60864290-60864309 None:intergenic 50.0%
CTACTCGGATAAACTCCACC+AGG - Chr1:60864451-60864470 None:intergenic 50.0%
CTATTGTCACCGGCACTACT+CGG - Chr1:60864466-60864485 None:intergenic 50.0%
GAGGCCCTTCAAGTACTTGT+TGG + Chr1:60863759-60863778 MsG0180003343.01.T01:CDS 50.0%
GGAGTTTATCCGAGTAGTGC+CGG + Chr1:60864454-60864473 MsG0180003343.01.T01:CDS 50.0%
TTGAAAGCAGCAGCTCAAGC+AGG + Chr1:60863315-60863334 MsG0180003343.01.T01:CDS 50.0%
!! AATGGCGCTGGCATATGTAG+GGG - Chr1:60864719-60864738 None:intergenic 50.0%
!! AGCACTAAGTATTGAGCCGC+AGG + Chr1:60863878-60863897 MsG0180003343.01.T01:CDS 50.0%
!! GGCCGTTTTGCATAGCAAGA+TGG - Chr1:60863530-60863549 None:intergenic 50.0%
CCATTAGAGACGCGACTGTG+AGG + Chr1:60863694-60863713 MsG0180003343.01.T01:CDS 55.0%
CCTCACAGTCGCGTCTCTAA+TGG - Chr1:60863697-60863716 None:intergenic 55.0%
CTCGGATAAACTCCACCAGG+GGG - Chr1:60864448-60864467 None:intergenic 55.0%
! ATGTGCAAGGGTGGGAGCAT+CGG - Chr1:60864281-60864300 None:intergenic 55.0%
!! ACAAAGAGGCGCTGTAGAGC+TGG + Chr1:60863800-60863819 MsG0180003343.01.T01:CDS 55.0%
! GAATCAGCTCTGACTCCCCC+TGG + Chr1:60864430-60864449 MsG0180003343.01.T01:CDS 60.0%
! TCAGCTCTGACTCCCCCTGG+TGG + Chr1:60864433-60864452 MsG0180003343.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 60863282 60864855 60863282 ID=MsG0180003343.01;Name=MsG0180003343.01
Chr1 mRNA 60863282 60864855 60863282 ID=MsG0180003343.01.T01;Parent=MsG0180003343.01;Name=MsG0180003343.01.T01;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|444
Chr1 exon 60863282 60863899 60863282 ID=MsG0180003343.01.T01:exon:4107;Parent=MsG0180003343.01.T01
Chr1 exon 60864139 60864855 60864139 ID=MsG0180003343.01.T01:exon:4108;Parent=MsG0180003343.01.T01
Chr1 CDS 60863282 60863899 60863282 ID=MsG0180003343.01.T01:cds;Parent=MsG0180003343.01.T01
Chr1 CDS 60864139 60864855 60864139 ID=MsG0180003343.01.T01:cds;Parent=MsG0180003343.01.T01
Gene Sequence

>MsG0180003343.01.T01

ATGAACACAAATGGCATATATTGTTTTAACCGATTGAAAGCAGCAGCTCAAGCAGGTGATATAGATCTCCTATACACAGTAATTCAAGATGATCCATACATTTTGGAGCGTATAGATTTAATACCATTTGTTGAAACTCCTTTACATACTGCTGCATCTATGGGTCATCTTCAATTTGCTACTGAAATTATGAATTTGAAACCTTCATATGCTTGGAAACTAGATCAGCAAGGATTCAGCCCCATCCATCTTGCTATGCAAAACGGCCAAAAGAATATGGTGTCTCAATTTGTGAACATCAATAAAGAACTTGTTAGAGTTCAAGGAAGAGAAGGCTTAACTGCTCTTCATTTTGCAAGTCAAATTGGAGAGGTTGACCTTTTAGCTAAATTCCTCCTTGTTTGTCCTAATTCCATTAGAGACGCGACTGTGAGGTGCGAGACCGCGTTGCATATTGCTATTAAGAATGAACAATATGAGGCCCTTCAAGTACTTGTTGGATGGCTCGAAACAAATAAACAAAGAGGCGCTGTAGAGCTGGAAAATGAAATATTAAACAAGAGGGACAATGCAGGCAACACCATTTTGCATGTTTCAGCACTAAGTATTGAGCCGCAGAAAATTCTATTGTTGCTAAGCACTGGTATAAATTTCGAGGCAAAGAATTTGGAAAGCAAAACAGCATTAGACATAGCAAGCACTCCAAAGATCAAGGGTATATTATTAAGGGCTGGAGCAAAATCTAGAATAGAAGTCGCCGATGCTCCCACCCTTGCACATAGACTAAGGTCAAAGACAACAACTATGTATAAATTGTTAATTCAGACAATTCGTATTAGAAGTGACATGACAGAGGAGCAACGCAACATTTGGTTAATAGTCGCAGCTCTTATTGCAACTACCATGTATGAATCAGCTCTGACTCCCCCTGGTGGAGTTTATCCGAGTAGTGCCGGTGACAATAGTTTGAACATCGATTCCTCCAATTCTACTATTTCTAGTACCCAAGGAAATGTTGGGAAATCTGTTTTGTCAGAAGCTATTTTCTGTCTGTTTGCAGTTTCAAATATGCTTTCCTTTTTTATATCAACTACAACAATAATTATTATGACCTCAAGTGTGATGCAATGCACTGTGGTGTACATGCTAATGTATTGGTTTTCCCTTTGTTATATGATCTCTATGTTGAAGATATCCCCTACATATGCCAGCGCCATTATTGCTAAAATCCCTTTTGTTGTTTTTTTATCTGTCCCATTTGTTTGTGTAATTTTTCTTTTCGTCTACTCACAACTTCAGCACGAGCGCAATGCAAAGAAACATAATAGATCATAG
Protein sequence

>MsG0180003343.01.T01

MNTNGIYCFNRLKAAAQAGDIDLLYTVIQDDPYILERIDLIPFVETPLHTAASMGHLQFATEIMNLKPSYAWKLDQQGFSPIHLAMQNGQKNMVSQFVNINKELVRVQGREGLTALHFASQIGEVDLLAKFLLVCPNSIRDATVRCETALHIAIKNEQYEALQVLVGWLETNKQRGAVELENEILNKRDNAGNTILHVSALSIEPQKILLLLSTGINFEAKNLESKTALDIASTPKIKGILLRAGAKSRIEVADAPTLAHRLRSKTTTMYKLLIQTIRIRSDMTEEQRNIWLIVAALIATTMYESALTPPGGVYPSSAGDNSLNIDSSNSTISSTQGNVGKSVLSEAIFCLFAVSNMLSFFISTTTIIIMTSSVMQCTVVYMLMYWFSLCYMISMLKISPTYASAIIAKIPFVVFLSVPFVCVIFLFVYSQLQHERNAKKHNRS*