AlfalfaGEDB | MsG0380014275.01

M. sativa cultivar ZhongmuNo.1 / MsG0380014275.01

KEGG: -
GO: GO:0030246
PFAM: PF00139

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014275.01.T01	XP_013459894.1	90.421	261	25	0	1	261	1	261	5.17E-166	469

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014275.01.T01	Q41160	55.556	252	106	4	11	260	8	255	9.50E-87	262

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014275.01.T01	A0A072V711	90.421	261	25	0	1	261	1	261	2.47e-166	469

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type
MsG0380014275.01	MsG0380014744.01	PPI
MsG0380014275.01	MsG0180004091.01	PPI
MsG0180005059.01	MsG0380014275.01	PPI
MsG0380013594.01	MsG0380014275.01	PPI
MsG0380014275.01	MsG0880045214.01	PPI
MsG0180005060.01	MsG0380014275.01	PPI
MsG0380014748.01	MsG0380014275.01	PPI
MsG0380014275.01	MsG0580025598.01	PPI
MsG0380013595.01	MsG0380014275.01	PPI
MsG0880045216.01	MsG0380014275.01	PPI
MsG0380014275.01	MsG0180005059.01	PPI
MsG0380014275.01	MsG0880045216.01	PPI
MsG0380014272.01	MsG0380014275.01	PPI
MsG0180004091.01	MsG0380014275.01	PPI
MsG0380014275.01	MsG0180005080.01	PPI
MsG0380014275.01	MsG0580025592.01	PPI
MsG0380014275.01	MsG0880045217.01	PPI
MsG0380014275.01	MsG0180005082.01	PPI
MsG0880042846.01	MsG0380014275.01	PPI
MsG0180004091.01	MsG0380014275.01	PPI
MsG0580025592.01	MsG0380014275.01	PPI
MsG0180004091.01	MsG0380014275.01	PPI
MsG0380014275.01	MsG0380013593.01	PPI
MsG0580025591.01	MsG0380014275.01	PPI
MsG0380014275.01	MsG0180004091.01	PPI
MsG0180004091.01	MsG0380014275.01	PPI
MsG0180005082.01	MsG0380014275.01	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014275.01.T01	MTR_3g054180	90.421	261	25	0	1	261	1	261	6.27e-170	469
MsG0380014275.01.T01	MTR_3g054170	82.879	257	42	1	5	261	1	255	6.82e-152	424
MsG0380014275.01.T01	MTR_3g054200	73.930	257	65	1	5	261	1	255	7.09e-135	380
MsG0380014275.01.T01	MTR_0684s0020	50.763	262	124	3	1	260	1	259	5.59e-82	247
MsG0380014275.01.T01	MTR_0163s0020	50.763	262	124	3	1	260	2	260	5.77e-82	247
MsG0380014275.01.T01	MTR_1g090973	52.282	241	109	3	21	258	21	258	1.37e-81	246
MsG0380014275.01.T01	MTR_3g047140	50.996	251	118	3	11	258	11	259	6.44e-76	232
MsG0380014275.01.T01	MTR_3g027280	52.400	250	99	8	22	259	24	265	4.67e-72	222
MsG0380014275.01.T01	MTR_1g090960	48.800	250	84	4	19	261	19	231	4.44e-70	216
MsG0380014275.01.T01	MTR_1g090943	51.653	242	107	6	21	258	23	258	3.61e-69	215
MsG0380014275.01.T01	MTR_1g090937	45.714	245	112	7	22	257	24	256	8.86e-65	203
MsG0380014275.01.T01	MTR_1g090930	47.287	258	109	9	16	259	18	262	4.09e-62	197
MsG0380014275.01.T01	MTR_1g090957	48.800	250	96	9	22	259	24	253	1.19e-61	195
MsG0380014275.01.T01	MTR_4g023810	44.206	233	119	6	30	258	27	252	5.23e-44	150
MsG0380014275.01.T01	MTR_8g023510	40.467	257	142	7	11	261	9	260	7.58e-41	142
MsG0380014275.01.T01	MTR_8g068040	34.201	269	155	9	4	260	3	261	1.14e-37	133
MsG0380014275.01.T01	MTR_8g068030	33.088	272	158	8	4	260	3	265	6.92e-36	129
MsG0380014275.01.T01	MTR_5g031160	36.000	250	137	9	30	260	42	287	6.02e-35	127
MsG0380014275.01.T01	MTR_5g031120	36.992	246	131	9	35	260	38	279	1.06e-34	126
MsG0380014275.01.T01	MTR_5g031090	37.860	243	126	10	37	258	35	273	4.84e-34	124
MsG0380014275.01.T01	MTR_5g031140	34.818	247	138	8	33	260	44	286	3.18e-33	122
MsG0380014275.01.T01	MTR_8g067980	38.235	238	127	9	37	259	26	258	3.30e-33	122
MsG0380014275.01.T01	MTR_5g031100	35.510	245	135	8	35	260	38	278	1.64e-32	120
MsG0380014275.01.T01	MTR_5g031030	36.402	239	131	9	37	258	38	272	4.44e-32	119
MsG0380014275.01.T01	MTR_8g067990	36.287	237	131	10	37	258	26	257	6.15e-32	118
MsG0380014275.01.T01	MTR_8g068050	35.565	239	135	7	37	260	39	273	1.11e-31	123
MsG0380014275.01.T01	MTR_8g067735	37.131	237	133	9	38	261	46	279	6.36e-31	121
MsG0380014275.01.T01	MTR_4g056320	34.361	227	106	6	37	260	43	229	4.75e-30	113
MsG0380014275.01.T01	MTR_8g067720	30.916	262	159	7	9	260	8	257	7.61e-29	115
MsG0380014275.01.T01	MTR_4g056360	34.211	228	110	7	37	260	42	233	1.18e-28	110
MsG0380014275.01.T01	MTR_8g067690	38.265	196	109	5	75	260	101	294	1.95e-28	114
MsG0380014275.01.T01	MTR_8g067940	34.944	269	146	11	15	258	15	279	5.89e-28	108
MsG0380014275.01.T01	MTR_8g067630	37.113	194	111	5	75	258	71	263	3.45e-27	110
MsG0380014275.01.T01	MTR_8g067930	33.962	265	149	10	9	260	8	259	5.54e-27	109
MsG0380014275.01.T01	MTR_4g093080	30.855	269	163	9	5	260	1	259	9.80e-27	109
MsG0380014275.01.T01	MTR_7g115740	32.271	251	144	11	28	260	18	260	1.25e-25	105
MsG0380014275.01.T01	MTR_8g067960	33.065	248	143	10	29	260	1	241	5.70e-25	99.8
MsG0380014275.01.T01	MTR_4g093140	30.451	266	157	10	9	260	13	264	7.20e-24	100
MsG0380014275.01.T01	MTR_4g093110	30.943	265	157	11	9	260	13	264	7.68e-23	97.8
MsG0380014275.01.T01	MTR_1g014240	33.000	200	117	5	75	260	79	275	2.51e-22	96.3
MsG0380014275.01.T01	MTR_3g463370	33.333	267	122	8	5	260	1	222	2.36e-21	90.1
MsG0380014275.01.T01	MTR_7g116130	29.688	256	160	10	20	260	11	261	3.42e-21	92.8
MsG0380014275.01.T01	MTR_7g062940	30.739	257	153	8	19	256	5	255	5.44e-21	92.4
MsG0380014275.01.T01	MTR_4g093070	28.916	249	163	5	24	260	20	266	9.85e-21	91.7
MsG0380014275.01.T01	MTR_4g093040	31.780	236	136	10	23	239	21	250	5.79e-20	89.4
MsG0380014275.01.T01	MTR_5g025020	31.905	210	115	8	69	257	82	284	1.13e-18	85.5
MsG0380014275.01.T01	MTR_4g093050	29.643	280	149	16	10	259	4	265	4.30e-18	84.0
MsG0380014275.01.T01	MTR_7g062750	28.077	260	159	8	19	256	5	258	9.43e-18	82.8
MsG0380014275.01.T01	MTR_7g062770	28.137	263	162	8	16	256	3	260	2.27e-17	81.6
MsG0380014275.01.T01	MTR_7g062950	28.906	256	158	8	20	256	5	255	8.09e-17	80.1
MsG0380014275.01.T01	MTR_7g063030	30.224	268	148	10	9	256	12	260	2.47e-16	78.6
MsG0380014275.01.T01	MTR_7g062890	30.502	259	152	10	19	256	5	256	2.55e-16	78.6
MsG0380014275.01.T01	MTR_5g068770	29.181	281	158	12	15	259	3	278	3.44e-16	78.2
MsG0380014275.01.T01	MTR_7g063030	29.615	260	152	10	22	256	1	254	9.24e-16	77.0
MsG0380014275.01.T01	MTR_5g077100	32.124	193	116	5	75	260	68	252	1.10e-15	77.0
MsG0380014275.01.T01	MTR_4g093040	35.260	173	93	8	83	240	1	169	1.37e-15	76.6
MsG0380014275.01.T01	MTR_3g068025	26.838	272	171	6	7	256	2	267	1.50e-15	76.3
MsG0380014275.01.T01	MTR_5g095970	30.435	230	140	8	38	256	25	245	4.00e-15	75.1
MsG0380014275.01.T01	MTR_3g007870	30.000	230	141	8	38	256	25	245	4.53e-15	75.1
MsG0380014275.01.T01	MTR_7g062700	29.630	243	142	8	37	256	22	258	2.44e-14	72.8
MsG0380014275.01.T01	MTR_1g048360	29.658	263	147	10	25	258	7	260	3.93e-14	72.4
MsG0380014275.01.T01	MTR_7g063010	28.761	226	145	4	46	256	32	256	1.32e-13	70.9
MsG0380014275.01.T01	MTR_7g062990	27.839	273	162	9	5	256	1	259	2.55e-13	69.7
MsG0380014275.01.T01	MTR_1g052275	28.462	260	158	8	19	256	5	258	5.37e-13	68.9
MsG0380014275.01.T01	MTR_7g062680	31.953	169	106	5	19	183	5	168	2.41e-12	67.0
MsG0380014275.01.T01	MTR_7g062920	28.462	260	158	8	20	257	6	259	4.30e-12	66.2
MsG0380014275.01.T01	MTR_7g115740	29.940	167	94	9	28	178	18	177	1.91e-11	64.3
MsG0380014275.01.T01	MTR_5g035910	28.462	260	161	7	18	256	8	263	2.27e-11	63.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014275.01.T01	AT5G65600	33.921	227	131	8	38	246	38	263	4.41e-24	101
MsG0380014275.01.T01	AT5G10530	34.694	245	132	12	35	260	19	254	2.74e-23	99.4
MsG0380014275.01.T01	AT2G37710	28.689	244	154	6	31	256	20	261	8.64e-20	89.0
MsG0380014275.01.T01	AT4G02420	28.030	264	166	8	12	256	2	260	2.15e-19	87.8
MsG0380014275.01.T01	AT1G70110	28.226	248	154	6	28	256	14	256	1.93e-17	82.0
MsG0380014275.01.T01	AT5G55830	30.000	260	156	11	19	259	15	267	3.56e-17	81.3
MsG0380014275.01.T01	AT3G53810	28.049	246	157	7	29	256	18	261	4.93e-17	80.9
MsG0380014275.01.T01	AT2G29220	25.475	263	172	7	13	256	4	261	3.50e-15	75.5
MsG0380014275.01.T01	AT2G29250	26.692	266	162	9	14	257	8	262	7.80e-15	74.3
MsG0380014275.01.T01	AT5G03140	29.675	246	156	7	8	240	3	244	1.07e-14	73.9
MsG0380014275.01.T01	AT4G02410	26.613	248	158	8	29	256	20	263	1.58e-14	73.6
MsG0380014275.01.T01	AT4G29050	28.704	216	133	5	60	256	59	272	8.50e-14	71.2
MsG0380014275.01.T01	AT4G29050	28.704	216	133	5	60	256	45	258	8.68e-14	71.2
MsG0380014275.01.T01	AT5G01550	25.357	280	167	9	16	258	16	290	1.40e-13	70.9
MsG0380014275.01.T01	AT3G59700	25.862	232	150	6	43	254	20	249	2.02e-13	70.1
MsG0380014275.01.T01	AT2G43700	28.384	229	138	7	47	254	24	247	5.21e-13	68.9
MsG0380014275.01.T01	AT4G04960	30.932	236	139	8	38	254	23	253	5.91e-13	68.6
MsG0380014275.01.T01	AT4G04960	30.932	236	139	8	38	254	23	253	8.42e-13	68.2
MsG0380014275.01.T01	AT3G53380	29.880	251	157	8	14	254	3	244	6.47e-12	65.9
MsG0380014275.01.T01	AT5G01560	27.451	255	141	10	38	258	30	274	6.76e-12	65.5
MsG0380014275.01.T01	AT3G55550	28.333	240	144	8	38	256	26	258	1.15e-11	65.1
MsG0380014275.01.T01	AT2G43700	28.251	223	134	7	53	254	6	223	3.82e-11	63.5
MsG0380014275.01.T01	AT2G43700	28.251	223	134	7	53	254	6	223	3.82e-11	63.5
MsG0380014275.01.T01	AT2G43700	28.251	223	134	7	53	254	6	223	3.82e-11	63.5
MsG0380014275.01.T01	AT2G43700	28.251	223	134	7	53	254	6	223	3.82e-11	63.5

Find 54 sgRNAs with CRISPR-Local

Find 67 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATTCAAATCCAGTGACTATT+TGG	0.132259	3:+52284142	MsG0380014275.01.T01:CDS
CGTTACTTCCTTTACCTTCA+TGG	0.182280	3:+52284194	MsG0380014275.01.T01:CDS
ATTCCAATATGTGCATAATT+TGG	0.186536	3:-52284396	None:intergenic
AACCCTTCTAAACAAAATAC+TGG	0.327315	3:+52284108	MsG0380014275.01.T01:CDS
GATCCAAATTATGCACATAT+TGG	0.332878	3:+52284393	MsG0380014275.01.T01:CDS
GGAGGAATTACGGTGTCTTC+TGG	0.334484	3:-52284270	None:intergenic
AATGCTTTCAATCAATTTGT+TGG	0.337022	3:+52284333	MsG0380014275.01.T01:CDS
AAACCAACCCTAACGTTCTC+TGG	0.362134	3:-52284594	None:intergenic
AATTTGACCATTGCTGTTAG+TGG	0.368918	3:-52284532	None:intergenic
AACAACACTCAATGTGTTAG+AGG	0.371119	3:-52284508	None:intergenic
CTGTTCTCCCAGAGAACGTT+AGG	0.375420	3:+52284586	MsG0380014275.01.T01:CDS
AATTGCAACACATTCATTCA+TGG	0.387095	3:+52284646	MsG0380014275.01.T01:CDS
TTCAAATCCAGTGACTATTT+GGG	0.405891	3:+52284143	MsG0380014275.01.T01:CDS
CCAGGACAACACCATGGAAC+AGG	0.408491	3:+52284442	MsG0380014275.01.T01:CDS
TTCCTTTACCTTCATGGTTG+AGG	0.409998	3:+52284200	MsG0380014275.01.T01:CDS
CACAGAGTTGGGAGGAATTA+CGG	0.410581	3:-52284280	None:intergenic
AGTAATAGTTGCTCTCTTGC+TGG	0.410965	3:+52283957	MsG0380014275.01.T01:CDS
CCTGTTCCATGGTGTTGTCC+TGG	0.430219	3:-52284442	None:intergenic
TGGATCAAACACTATCTCAT+TGG	0.449087	3:-52284376	None:intergenic
CAAAACTCGGAGTAGTTGAT+TGG	0.458028	3:+52284307	MsG0380014275.01.T01:CDS
GAACAGGGTGAGTGGGTCAT+TGG	0.461410	3:+52284458	MsG0380014275.01.T01:CDS
ATGAATGAATGTGTTGCAAT+TGG	0.487840	3:-52284644	None:intergenic
AACTCTGTGGGTGCAAAACT+CGG	0.490521	3:+52284294	MsG0380014275.01.T01:CDS
AACGAAGCTAGCGACATGTC+CGG	0.506759	3:-52284175	None:intergenic
TGTGTTAGAGGGAGAGTCAT+AGG	0.518866	3:-52284496	None:intergenic
AACCAACCCTAACGTTCTCT+GGG	0.528657	3:-52284593	None:intergenic
GACCCACTCACCCTGTTCCA+TGG	0.531299	3:-52284453	None:intergenic
TTCTAAACAAAATACTGGAC+GGG	0.533776	3:+52284113	MsG0380014275.01.T01:CDS
GTACTATCCCAAATAGTCAC+TGG	0.534112	3:-52284150	None:intergenic
CTCCCAGAGAACGTTAGGGT+TGG	0.539206	3:+52284591	MsG0380014275.01.T01:CDS
GTCCTCAACCATGAAGGTAA+AGG	0.544134	3:-52284202	None:intergenic
TCTGGAACAGTTACAGATGT+CGG	0.552786	3:+52284618	MsG0380014275.01.T01:CDS
AATGAATGTGTTGCAATTGG+CGG	0.572386	3:-52284641	None:intergenic
CACCATGGAACAGGGTGAGT+GGG	0.576059	3:+52284451	MsG0380014275.01.T01:CDS
ACACCATGGAACAGGGTGAG+TGG	0.579463	3:+52284450	MsG0380014275.01.T01:CDS
CTTCTAAACAAAATACTGGA+CGG	0.580631	3:+52284112	MsG0380014275.01.T01:CDS
TTAACACAGTAATTTCCTCC+AGG	0.585819	3:+52284424	MsG0380014275.01.T01:CDS
TCGATAGTCCTCAACCATGA+AGG	0.586974	3:-52284208	None:intergenic
ACTATTTGGGATAGTACTAC+CGG	0.588050	3:+52284156	MsG0380014275.01.T01:CDS
GTAATTCCTCCCAACTCTGT+GGG	0.589040	3:+52284282	MsG0380014275.01.T01:CDS
TGTTCTCCCAGAGAACGTTA+GGG	0.590966	3:+52284587	MsG0380014275.01.T01:CDS
CGTAATTCCTCCCAACTCTG+TGG	0.598431	3:+52284281	MsG0380014275.01.T01:CDS
CGAGGTTATAAACAAGCCGA+TGG	0.602626	3:+52284228	MsG0380014275.01.T01:CDS
CAATCTGATTTAATCATGCA+AGG	0.610977	3:+52284045	MsG0380014275.01.T01:CDS
ACAACACTCAATGTGTTAGA+GGG	0.619552	3:-52284507	None:intergenic
GTTCCATGGTGTTGTCCTGG+AGG	0.631280	3:-52284439	None:intergenic
CAGGACAACACCATGGAACA+GGG	0.631493	3:+52284443	MsG0380014275.01.T01:CDS
AAGAAAGAAAATGAGTCCAT+CGG	0.633261	3:-52284244	None:intergenic
GTTGTTGCCACTAACAGCAA+TGG	0.641371	3:+52284525	MsG0380014275.01.T01:CDS
TTTGCACCCACAGAGTTGGG+AGG	0.645830	3:-52284288	None:intergenic
TTTCCTCCAGGACAACACCA+TGG	0.669928	3:+52284436	MsG0380014275.01.T01:CDS
GTAGGAGACCAATCATGCAA+AGG	0.671028	3:-52284682	None:intergenic
TTCATGGTTGAGGACTATCG+AGG	0.693490	3:+52284210	MsG0380014275.01.T01:CDS
GATTAAATCAGATTGACCAG+AGG	0.734664	3:-52284037	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	GAAACAGAAAGAAAAAAAAA+TGG	-	Chr3:52283937-52283956	None:intergenic	20.0%
!	AATGCTTTCAATCAATTTGT+TGG	+	Chr3:52284333-52284352	MsG0380014275.01.T01:CDS	25.0%
!	ATTCCAATATGTGCATAATT+TGG	-	Chr3:52284399-52284418	None:intergenic	25.0%
!	TATCCCATTTGAAAAAATCT+CGG	-	Chr3:52284076-52284095	None:intergenic	25.0%
!!!	GATTTTTTCAAATGGGATAA+TGG	+	Chr3:52284077-52284096	MsG0380014275.01.T01:CDS	25.0%
	AACCCTTCTAAACAAAATAC+TGG	+	Chr3:52284108-52284127	MsG0380014275.01.T01:CDS	30.0%
	AAGAAAGAAAATGAGTCCAT+CGG	-	Chr3:52284247-52284266	None:intergenic	30.0%
	AATTGCAACACATTCATTCA+TGG	+	Chr3:52284646-52284665	MsG0380014275.01.T01:CDS	30.0%
	ATGAATGAATGTGTTGCAAT+TGG	-	Chr3:52284647-52284666	None:intergenic	30.0%
	ATTCAAATCCAGTGACTATT+TGG	+	Chr3:52284142-52284161	MsG0380014275.01.T01:CDS	30.0%
	CAATCTGATTTAATCATGCA+AGG	+	Chr3:52284045-52284064	MsG0380014275.01.T01:CDS	30.0%
	CTTCTAAACAAAATACTGGA+CGG	+	Chr3:52284112-52284131	MsG0380014275.01.T01:CDS	30.0%
	GATCCAAATTATGCACATAT+TGG	+	Chr3:52284393-52284412	MsG0380014275.01.T01:CDS	30.0%
	TTCAAATCCAGTGACTATTT+GGG	+	Chr3:52284143-52284162	MsG0380014275.01.T01:CDS	30.0%
	TTCTAAACAAAATACTGGAC+GGG	+	Chr3:52284113-52284132	MsG0380014275.01.T01:CDS	30.0%
!!	AGTATTTTGTTTAGAAGGGT+TGG	-	Chr3:52284109-52284128	None:intergenic	30.0%
!!	GTCCAGTATTTTGTTTAGAA+GGG	-	Chr3:52284113-52284132	None:intergenic	30.0%
!!!	AGTACCGAGATTTTTTCAAA+TGG	+	Chr3:52284069-52284088	MsG0380014275.01.T01:CDS	30.0%
!!!	GTACCGAGATTTTTTCAAAT+GGG	+	Chr3:52284070-52284089	MsG0380014275.01.T01:CDS	30.0%
	AACAACACTCAATGTGTTAG+AGG	-	Chr3:52284511-52284530	None:intergenic	35.0%
	AATGAATGTGTTGCAATTGG+CGG	-	Chr3:52284644-52284663	None:intergenic	35.0%
	ACAACACTCAATGTGTTAGA+GGG	-	Chr3:52284510-52284529	None:intergenic	35.0%
	GACTTTCAAAAATTCACCTC+TGG	+	Chr3:52284021-52284040	MsG0380014275.01.T01:CDS	35.0%
	GATTAAATCAGATTGACCAG+AGG	-	Chr3:52284040-52284059	None:intergenic	35.0%
	TGGATCAAACACTATCTCAT+TGG	-	Chr3:52284379-52284398	None:intergenic	35.0%
	TTAACACAGTAATTTCCTCC+AGG	+	Chr3:52284424-52284443	MsG0380014275.01.T01:CDS	35.0%
!	AATTTGACCATTGCTGTTAG+TGG	-	Chr3:52284535-52284554	None:intergenic	35.0%
!	ACTATTTGGGATAGTACTAC+CGG	+	Chr3:52284156-52284175	MsG0380014275.01.T01:CDS	35.0%
!!	CGTCCAGTATTTTGTTTAGA+AGG	-	Chr3:52284114-52284133	None:intergenic	35.0%
!!	GGTGAATTTTTGAAAGTCGA+AGG	-	Chr3:52284019-52284038	None:intergenic	35.0%
	AGTAATAGTTGCTCTCTTGC+TGG	+	Chr3:52283957-52283976	MsG0380014275.01.T01:CDS	40.0%
	CAAAACTCGGAGTAGTTGAT+TGG	+	Chr3:52284307-52284326	MsG0380014275.01.T01:CDS	40.0%
	CGTTACTTCCTTTACCTTCA+TGG	+	Chr3:52284194-52284213	MsG0380014275.01.T01:CDS	40.0%
	GTACTATCCCAAATAGTCAC+TGG	-	Chr3:52284153-52284172	None:intergenic	40.0%
	TTCCTTTACCTTCATGGTTG+AGG	+	Chr3:52284200-52284219	MsG0380014275.01.T01:CDS	40.0%
!	TCTGGAACAGTTACAGATGT+CGG	+	Chr3:52284618-52284637	MsG0380014275.01.T01:CDS	40.0%
!!	GAAGGAAGTTGTTTTCTGAG+AGG	-	Chr3:52284001-52284020	None:intergenic	40.0%
!!!	AACGTTAGGGTTGGTTTTTC+TGG	+	Chr3:52284600-52284619	MsG0380014275.01.T01:CDS	40.0%
	AAACCAACCCTAACGTTCTC+TGG	-	Chr3:52284597-52284616	None:intergenic	45.0%
	AACCAACCCTAACGTTCTCT+GGG	-	Chr3:52284596-52284615	None:intergenic	45.0%
	AACTCTGTGGGTGCAAAACT+CGG	+	Chr3:52284294-52284313	MsG0380014275.01.T01:CDS	45.0%
	CACAGAGTTGGGAGGAATTA+CGG	-	Chr3:52284283-52284302	None:intergenic	45.0%
	CGAGGTTATAAACAAGCCGA+TGG	+	Chr3:52284228-52284247	MsG0380014275.01.T01:CDS	45.0%
	GTAATTCCTCCCAACTCTGT+GGG	+	Chr3:52284282-52284301	MsG0380014275.01.T01:CDS	45.0%
	GTCCTCAACCATGAAGGTAA+AGG	-	Chr3:52284205-52284224	None:intergenic	45.0%
	GTTGTTGCCACTAACAGCAA+TGG	+	Chr3:52284525-52284544	MsG0380014275.01.T01:CDS	45.0%
	TCGATAGTCCTCAACCATGA+AGG	-	Chr3:52284211-52284230	None:intergenic	45.0%
	TGTGTTAGAGGGAGAGTCAT+AGG	-	Chr3:52284499-52284518	None:intergenic	45.0%
	TGTTCTCCCAGAGAACGTTA+GGG	+	Chr3:52284587-52284606	MsG0380014275.01.T01:CDS	45.0%
	TTCATGGTTGAGGACTATCG+AGG	+	Chr3:52284210-52284229	MsG0380014275.01.T01:CDS	45.0%
!	AGTTTTGCACCCACAGAGTT+GGG	-	Chr3:52284294-52284313	None:intergenic	45.0%
	AACGAAGCTAGCGACATGTC+CGG	-	Chr3:52284178-52284197	None:intergenic	50.0%
	CAGGACAACACCATGGAACA+GGG	+	Chr3:52284443-52284462	MsG0380014275.01.T01:CDS	50.0%
	CGTAATTCCTCCCAACTCTG+TGG	+	Chr3:52284281-52284300	MsG0380014275.01.T01:CDS	50.0%
	CTGTTCTCCCAGAGAACGTT+AGG	+	Chr3:52284586-52284605	MsG0380014275.01.T01:CDS	50.0%
	GGAGGAATTACGGTGTCTTC+TGG	-	Chr3:52284273-52284292	None:intergenic	50.0%
	TTTCCTCCAGGACAACACCA+TGG	+	Chr3:52284436-52284455	MsG0380014275.01.T01:CDS	50.0%
!	GAGTTTTGCACCCACAGAGT+TGG	-	Chr3:52284295-52284314	None:intergenic	50.0%
	ACACCATGGAACAGGGTGAG+TGG	+	Chr3:52284450-52284469	MsG0380014275.01.T01:CDS	55.0%
	CACCATGGAACAGGGTGAGT+GGG	+	Chr3:52284451-52284470	MsG0380014275.01.T01:CDS	55.0%
	CCAGGACAACACCATGGAAC+AGG	+	Chr3:52284442-52284461	MsG0380014275.01.T01:CDS	55.0%
	CTCCCAGAGAACGTTAGGGT+TGG	+	Chr3:52284591-52284610	MsG0380014275.01.T01:CDS	55.0%
	GAACAGGGTGAGTGGGTCAT+TGG	+	Chr3:52284458-52284477	MsG0380014275.01.T01:CDS	55.0%
	TTTGCACCCACAGAGTTGGG+AGG	-	Chr3:52284291-52284310	None:intergenic	55.0%
!!	CCTGTTCCATGGTGTTGTCC+TGG	-	Chr3:52284445-52284464	None:intergenic	55.0%
!!	GTTCCATGGTGTTGTCCTGG+AGG	-	Chr3:52284442-52284461	None:intergenic	55.0%
	GACCCACTCACCCTGTTCCA+TGG	-	Chr3:52284456-52284475	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	52283907	52284692	52283907	ID=MsG0380014275.01;Name=MsG0380014275.01
Chr3	mRNA	52283907	52284692	52283907	ID=MsG0380014275.01.T01;Parent=MsG0380014275.01;Name=MsG0380014275.01.T01;_AED=0.18;_eAED=0.18;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|261
Chr3	exon	52283907	52284692	52283907	ID=MsG0380014275.01.T01:exon:10260;Parent=MsG0380014275.01.T01
Chr3	CDS	52283907	52284692	52283907	ID=MsG0380014275.01.T01:cds;Parent=MsG0380014275.01.T01

Gene Sequence

>MsG0380014275.01.T01

ATGAGTATCATCATGTCTTCAAGATTACCATTTTTTTTTCTTTCTGTTTCAGTAATAGTTGCTCTCTTGCTGGCAACTACTGAACTAGTGACCTCTCAGAAAACAACTTCCTTCGACTTTCAAAAATTCACCTCTGGTCAATCTGATTTAATCATGCAAGGTAGTACCGAGATTTTTTCAAATGGGATAATGGCACTCACCAACCCTTCTAAACAAAATACTGGACGGGTGTTGTATTCAAATCCAGTGACTATTTGGGATAGTACTACCGGACATGTCGCTAGCTTCGTTACTTCCTTTACCTTCATGGTTGAGGACTATCGAGGTTATAAACAAGCCGATGGACTCATTTTCTTTCTTGCACCAGAAGACACCGTAATTCCTCCCAACTCTGTGGGTGCAAAACTCGGAGTAGTTGATTGGAAAAATGCTTTCAATCAATTTGTTGGTGTCGAGTTTGACAGTCATGCCAATGAGATAGTGTTTGATCCAAATTATGCACATATTGGAATTGATGTTAACACAGTAATTTCCTCCAGGACAACACCATGGAACAGGGTGAGTGGGTCATTGGTTAAAGTAAGTATAACCTATGACTCTCCCTCTAACACATTGAGTGTTGTTGCCACTAACAGCAATGGTCAAATTTCTACTCTTGCTGATGTTGTTGATTTGAAAGCTGTTCTCCCAGAGAACGTTAGGGTTGGTTTTTCTGGAACAGTTACAGATGTCGGCCGCCAATTGCAACACATTCATTCATGGTCTTTCACTTCAACCTTTGCATGA

Protein sequence

>MsG0380014275.01.T01

MSIIMSSRLPFFFLSVSVIVALLLATTELVTSQKTTSFDFQKFTSGQSDLIMQGSTEIFSNGIMALTNPSKQNTGRVLYSNPVTIWDSTTGHVASFVTSFTFMVEDYRGYKQADGLIFFLAPEDTVIPPNSVGAKLGVVDWKNAFNQFVGVEFDSHANEIVFDPNYAHIGIDVNTVISSRTTPWNRVSGSLVKVSITYDSPSNTLSVVATNSNGQISTLADVVDLKAVLPENVRVGFSGTVTDVGRQLQHIHSWSFTSTFA*