AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014748.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014748.01.T01 MTR_3g463370 76.429 280 26 2 1 279 1 241 3.04e-145 407
MsG0380014748.01.T01 MTR_8g023510 70.677 266 68 4 1 263 3 261 1.96e-124 356
MsG0380014748.01.T01 MTR_4g023810 56.604 265 102 4 1 262 1 255 9.33e-92 273
MsG0380014748.01.T01 MTR_8g068040 37.736 265 140 7 9 261 10 261 4.99e-49 163
MsG0380014748.01.T01 MTR_5g031100 38.889 270 135 8 17 261 14 278 1.85e-48 162
MsG0380014748.01.T01 MTR_8g068030 37.226 274 133 9 9 261 10 265 3.21e-48 161
MsG0380014748.01.T01 MTR_5g031120 39.483 271 133 8 17 261 14 279 3.50e-48 162
MsG0380014748.01.T01 MTR_5g031140 39.209 278 140 10 7 261 15 286 3.63e-47 159
MsG0380014748.01.T01 MTR_5g031160 39.130 253 136 8 22 261 40 287 5.66e-47 159
MsG0380014748.01.T01 MTR_3g054170 41.288 264 142 5 1 261 1 254 6.62e-47 157
MsG0380014748.01.T01 MTR_3g027280 40.467 257 130 8 12 257 18 262 4.57e-45 154
MsG0380014748.01.T01 MTR_3g054180 41.573 267 139 6 1 261 5 260 4.50e-44 150
MsG0380014748.01.T01 MTR_8g068050 38.909 275 144 8 3 264 13 276 9.24e-44 158
MsG0380014748.01.T01 MTR_5g031090 37.698 252 133 9 27 261 31 275 2.90e-43 149
MsG0380014748.01.T01 MTR_3g047140 40.230 261 139 8 7 261 12 261 1.13e-42 147
MsG0380014748.01.T01 MTR_0684s0020 37.313 268 154 6 7 271 13 269 1.37e-40 142
MsG0380014748.01.T01 MTR_0163s0020 37.313 268 154 6 7 271 14 270 1.37e-40 142
MsG0380014748.01.T01 MTR_5g031030 36.800 250 134 8 27 261 34 274 5.55e-40 140
MsG0380014748.01.T01 MTR_8g067980 41.296 247 118 12 31 262 26 260 5.97e-40 140
MsG0380014748.01.T01 MTR_8g067940 36.567 268 152 9 10 261 16 281 5.96e-39 138
MsG0380014748.01.T01 MTR_1g090973 36.264 273 158 7 7 274 12 273 1.74e-38 136
MsG0380014748.01.T01 MTR_1g090957 37.984 258 123 9 12 257 18 250 9.40e-38 134
MsG0380014748.01.T01 MTR_8g067930 37.066 259 140 8 16 261 11 259 5.69e-36 135
MsG0380014748.01.T01 MTR_8g067690 36.437 247 139 7 32 268 63 301 1.10e-35 135
MsG0380014748.01.T01 MTR_3g054200 37.121 264 153 5 1 261 1 254 2.64e-35 127
MsG0380014748.01.T01 MTR_8g067630 39.091 220 117 6 32 242 33 244 1.23e-34 132
MsG0380014748.01.T01 MTR_8g067720 32.103 271 160 7 1 261 1 257 2.03e-34 131
MsG0380014748.01.T01 MTR_4g093080 35.316 269 151 11 5 261 2 259 2.45e-34 132
MsG0380014748.01.T01 MTR_8g067990 38.683 243 124 11 31 259 26 257 5.42e-34 124
MsG0380014748.01.T01 MTR_1g090943 35.531 273 159 9 9 276 15 275 2.17e-33 123
MsG0380014748.01.T01 MTR_8g067960 37.131 237 126 9 37 261 16 241 5.49e-33 121
MsG0380014748.01.T01 MTR_4g093140 33.588 262 151 9 12 263 18 266 1.58e-32 126
MsG0380014748.01.T01 MTR_1g090930 38.189 254 127 9 16 256 22 258 3.94e-32 120
MsG0380014748.01.T01 MTR_8g067735 34.100 261 150 8 14 261 27 278 4.83e-32 125
MsG0380014748.01.T01 MTR_1g090937 34.661 251 138 8 15 256 21 254 6.75e-31 116
MsG0380014748.01.T01 MTR_4g093110 32.955 264 150 10 12 263 18 266 4.47e-30 119
MsG0380014748.01.T01 MTR_1g014240 32.340 235 131 7 43 261 53 275 1.30e-27 112
MsG0380014748.01.T01 MTR_7g116130 37.131 237 119 12 43 262 39 262 2.37e-26 108
MsG0380014748.01.T01 MTR_4g093040 34.818 247 132 12 21 250 25 259 3.87e-26 107
MsG0380014748.01.T01 MTR_7g115740 34.420 276 148 12 18 275 14 274 5.29e-26 107
MsG0380014748.01.T01 MTR_4g093040 38.710 186 93 9 77 250 1 177 6.62e-25 104
MsG0380014748.01.T01 MTR_4g093070 32.889 225 115 8 58 263 61 268 2.89e-23 99.8
MsG0380014748.01.T01 MTR_1g090960 31.071 280 133 8 7 274 12 243 5.93e-23 94.7
MsG0380014748.01.T01 MTR_1g048360 33.182 220 121 9 51 259 56 260 7.46e-23 98.2
MsG0380014748.01.T01 MTR_7g062940 29.924 264 156 7 12 257 3 255 1.47e-19 88.6
MsG0380014748.01.T01 MTR_8g068050 36.765 136 78 3 3 133 13 145 7.02e-17 80.9
MsG0380014748.01.T01 MTR_4g093050 31.298 262 150 12 15 257 12 262 4.37e-16 78.6
MsG0380014748.01.T01 MTR_5g025020 31.401 207 117 8 66 256 85 282 1.39e-15 77.0
MsG0380014748.01.T01 MTR_5g068770 27.491 291 161 13 4 259 2 277 2.39e-15 76.3
MsG0380014748.01.T01 MTR_7g062890 28.679 265 157 9 13 257 4 256 6.35e-15 75.1
MsG0380014748.01.T01 MTR_7g062950 27.547 265 161 8 12 257 3 255 7.36e-15 74.7
MsG0380014748.01.T01 MTR_1g052275 28.947 266 159 8 12 257 3 258 1.30e-14 73.9
MsG0380014748.01.T01 MTR_5g077100 29.515 227 134 7 48 264 45 255 1.84e-14 73.6
MsG0380014748.01.T01 MTR_7g062700 29.455 275 151 10 8 257 2 258 5.00e-14 72.4
MsG0380014748.01.T01 MTR_4g056320 28.854 253 126 8 16 261 24 229 6.50e-14 70.5
MsG0380014748.01.T01 MTR_7g063030 25.556 270 173 6 4 257 3 260 8.37e-14 71.6
MsG0380014748.01.T01 MTR_7g062750 27.820 266 162 7 12 257 3 258 1.02e-13 71.2
MsG0380014748.01.T01 MTR_5g035910 28.467 274 159 13 6 257 5 263 2.75e-13 70.1
MsG0380014748.01.T01 MTR_7g063030 27.049 244 152 6 32 257 19 254 2.91e-13 70.1
MsG0380014748.01.T01 MTR_7g063010 26.437 261 161 8 14 257 10 256 5.70e-13 69.3
MsG0380014748.01.T01 MTR_7g062990 26.792 265 162 8 14 257 6 259 8.10e-12 65.9
MsG0380014748.01.T01 MTR_7g062680 26.316 266 167 7 12 257 3 259 8.22e-12 65.9
MsG0380014748.01.T01 MTR_7g062770 30.252 238 132 7 43 257 34 260 3.74e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014748.01.T01 AT5G10530 35.361 263 150 9 11 263 4 256 2.42e-31 122
MsG0380014748.01.T01 AT5G65600 33.913 230 136 6 32 250 38 262 1.02e-27 112
MsG0380014748.01.T01 AT4G02420 31.034 261 151 9 14 257 12 260 2.61e-21 94.0
MsG0380014748.01.T01 AT2G37710 29.804 255 144 8 25 257 20 261 1.05e-20 92.0
MsG0380014748.01.T01 AT4G02410 32.016 253 147 7 25 260 22 266 1.39e-20 91.7
MsG0380014748.01.T01 AT3G16530 28.315 279 154 11 14 259 6 271 6.80e-20 87.4
MsG0380014748.01.T01 AT3G15356 29.804 255 131 10 40 258 28 270 1.35e-18 83.6
MsG0380014748.01.T01 AT2G29250 28.958 259 155 8 17 257 14 261 2.04e-18 85.5
MsG0380014748.01.T01 AT5G01550 28.622 283 163 10 9 259 15 290 2.38e-18 85.1
MsG0380014748.01.T01 AT4G29050 31.780 236 127 10 48 262 39 261 8.28e-18 83.6
MsG0380014748.01.T01 AT4G29050 31.780 236 127 10 48 262 53 275 9.52e-18 83.6
MsG0380014748.01.T01 AT5G01560 29.762 252 146 10 32 259 30 274 1.47e-17 82.8
MsG0380014748.01.T01 AT3G53810 28.958 259 151 10 24 262 19 264 1.57e-16 79.7
MsG0380014748.01.T01 AT5G01540 28.235 255 153 8 29 259 30 278 2.36e-16 79.3
MsG0380014748.01.T01 AT5G60280 29.183 257 149 9 19 257 15 256 2.69e-16 79.0
MsG0380014748.01.T01 AT3G55550 29.098 244 146 7 32 258 26 259 3.24e-15 75.9
MsG0380014748.01.T01 AT2G29220 27.612 268 163 9 10 258 7 262 3.31e-15 75.9
MsG0380014748.01.T01 AT5G60300 29.249 253 139 11 28 257 23 258 5.27e-14 72.4
MsG0380014748.01.T01 AT5G60300 29.249 253 139 11 28 257 23 258 5.27e-14 72.4
MsG0380014748.01.T01 AT5G60300 29.249 253 139 11 28 257 23 258 7.17e-14 72.0
MsG0380014748.01.T01 AT1G53080 29.577 284 155 12 10 259 6 278 1.07e-13 70.1
MsG0380014748.01.T01 AT5G03140 28.899 218 134 7 48 255 51 257 1.46e-13 70.9
MsG0380014748.01.T01 AT5G06740 28.832 274 157 13 6 258 1 257 1.73e-13 70.9
MsG0380014748.01.T01 AT1G70110 27.801 241 139 10 43 262 33 259 2.20e-13 70.5
MsG0380014748.01.T01 AT5G06740 31.401 207 115 10 64 258 78 269 2.26e-13 70.5
MsG0380014748.01.T01 AT1G07460 28.112 249 127 10 41 260 38 263 4.46e-13 68.6
MsG0380014748.01.T01 AT5G03350 28.826 281 146 14 14 258 6 268 6.28e-13 67.8
MsG0380014748.01.T01 AT5G55830 28.814 236 140 9 42 259 41 266 8.71e-13 68.6
MsG0380014748.01.T01 AT3G53380 33.077 260 144 12 10 255 1 244 1.36e-12 68.2
MsG0380014748.01.T01 AT2G43700 27.586 232 143 8 41 255 24 247 3.53e-12 67.0
MsG0380014748.01.T01 AT4G04960 29.817 218 121 7 58 255 48 253 8.38e-11 62.8

Find 70 sgRNAs with CRISPR-Local

Find 76 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACTTATATTTCCGGGTTT+TGG 0.175284 3:-59274696 None:intergenic
ACCTGTGCTACTTATATTTC+CGG 0.201477 3:-59274703 None:intergenic
CAACAGTTTGAATTGATTCT+TGG 0.258091 3:-59274635 None:intergenic
ATTCTGCCCCTATTCACATT+TGG 0.267516 3:+59274439 MsG0380014748.01.T01:CDS
CTTGGAAGATGAGATTCTTT+TGG 0.271367 3:-59274341 None:intergenic
AATGTTGTTATAGGGTTTAA+TGG 0.281201 3:+59274804 MsG0380014748.01.T01:CDS
CCTCCTTGACTATTTGATTT+CGG 0.300777 3:-59274582 None:intergenic
AAAAGGCTAATGTTGTTATA+GGG 0.308799 3:+59274796 MsG0380014748.01.T01:CDS
AACCACTGTGCCTTGGAGTT+TGG 0.308958 3:+59274764 MsG0380014748.01.T01:CDS
GAGTTTGGAAAATAATAAAA+AGG 0.310939 3:+59274779 MsG0380014748.01.T01:CDS
CTTCCCTGTTGAGGTAGTTT+CGG 0.316382 3:-59274370 None:intergenic
TTCTGCCCCTATTCACATTT+GGG 0.317850 3:+59274440 MsG0380014748.01.T01:CDS
TGCTATCCCAAATGTGAATA+GGG 0.336758 3:-59274446 None:intergenic
ACACTTTCTATAATGTTGAT+TGG 0.349095 3:+59274670 MsG0380014748.01.T01:CDS
TTGCTATCCCAAATGTGAAT+AGG 0.349217 3:-59274447 None:intergenic
CACTTTCTATAATGTTGATT+GGG 0.365069 3:+59274671 MsG0380014748.01.T01:CDS
CCTGTGCTACTTATATTTCC+GGG 0.376831 3:-59274702 None:intergenic
AGTAGCACAGGTCGACATAT+TGG 0.377327 3:+59274714 MsG0380014748.01.T01:CDS
GTGGGTAAGTATTGGTTTCT+CGG 0.379419 3:+59274920 MsG0380014748.01.T01:CDS
CACATTTGGGATAGCAAAAC+CGG 0.385321 3:+59274453 MsG0380014748.01.T01:CDS
TTCAAAGTTAGCCACGCTTC+CGG 0.394516 3:-59274472 None:intergenic
GATGCCGAAACTACCTCAAC+AGG 0.405476 3:+59274366 MsG0380014748.01.T01:CDS
TACCTTCACCTTTACAATAA+CGG 0.427007 3:+59274497 MsG0380014748.01.T01:CDS
AAGTCATGTTGTGCCTTTGA+AGG 0.442955 3:+59274884 MsG0380014748.01.T01:CDS
AAGGCAGTCAAGAACTCTAT+TGG 0.455172 3:+59274405 MsG0380014748.01.T01:CDS
TCAAAGGCACAACATGACTT+AGG 0.457672 3:-59274881 None:intergenic
TAGCAAGATGAAGAATGTTA+AGG 0.459173 3:-59274259 None:intergenic
TGTTGATGTTGAATATCCTT+TGG 0.459621 3:+59274845 MsG0380014748.01.T01:CDS
GATGAAGAATGTTAAGGAGA+TGG 0.464083 3:-59274253 None:intergenic
GGAGAGGATAAAAGAGACGT+TGG 0.480594 3:-59274232 None:intergenic
TCTGCAACATTATAAGTATT+AGG 0.482296 3:-59274522 None:intergenic
GTTCCTGAGTGGGTAAGTAT+TGG 0.486497 3:+59274912 MsG0380014748.01.T01:CDS
ATCAACACTCAACACATTTG+TGG 0.492912 3:-59274829 None:intergenic
GACAAACTTTGTGATGGAAA+AGG 0.501076 3:-59274313 None:intergenic
CTTCATCTTGCTATTGAACA+AGG 0.506685 3:+59274269 MsG0380014748.01.T01:CDS
GAGGATAAAAGAGACGTTGG+AGG 0.512714 3:-59274229 None:intergenic
TTGAACAGAGCTTGAAACAT+TGG 0.515799 3:-59275030 None:intergenic
AATAGAGTTCTTGACTGCCT+TGG 0.516176 3:-59274403 None:intergenic
AATCGATAACCACTGTGCCT+TGG 0.517172 3:+59274757 MsG0380014748.01.T01:CDS
ATTAGGCGCCGTTATTGTAA+AGG 0.518797 3:-59274505 None:intergenic
ATTGGTTTCTCGGCTGCCAC+CGG 0.526116 3:+59274930 MsG0380014748.01.T01:CDS
CAAAGGCACAACATGACTTA+GGG 0.534314 3:-59274880 None:intergenic
AATAGTCAAGGAGGATACCT+TGG 0.535136 3:+59274591 MsG0380014748.01.T01:CDS
CCCGGAAATATAAGTAGCAC+AGG 0.544449 3:+59274702 MsG0380014748.01.T01:CDS
TTTGATTCAAAGTTGAACCT+AGG 0.546087 3:+59274990 MsG0380014748.01.T01:CDS
ATGTTCTGCATATTCGTCTC+CGG 0.546836 3:-59274949 None:intergenic
GATTTCGGCTGAGTATCAAT+CGG 0.546913 3:-59274567 None:intergenic
CGCCGTTATTGTAAAGGTGA+AGG 0.549680 3:-59274499 None:intergenic
GAGTTCTAACTTCCCTGTTG+AGG 0.551336 3:-59274379 None:intergenic
GTCTGGGACAAACTTTGTGA+TGG 0.552038 3:-59274319 None:intergenic
CAAAAGAATCTCATCTTCCA+AGG 0.558206 3:+59274342 MsG0380014748.01.T01:CDS
CATTGATGATATCAAAACCT+AGG 0.562473 3:-59275007 None:intergenic
GTTGATTGGGATCCAAAACC+CGG 0.571452 3:+59274684 MsG0380014748.01.T01:CDS
GAAGGATGTTGTTCCTGAGT+GGG 0.579500 3:+59274902 MsG0380014748.01.T01:CDS
TCAGGAACAACATCCTTCAA+AGG 0.591464 3:-59274897 None:intergenic
AGAATCAATTCAAACTGTTG+CGG 0.597952 3:+59274638 MsG0380014748.01.T01:CDS
TGAAGGATGTTGTTCCTGAG+TGG 0.603177 3:+59274901 MsG0380014748.01.T01:CDS
CAGCCGAAATCAAATAGTCA+AGG 0.608282 3:+59274579 MsG0380014748.01.T01:CDS
GCTATCCCAAATGTGAATAG+GGG 0.608736 3:-59274445 None:intergenic
AGAATGTTAAGGAGATGGAG+AGG 0.611140 3:-59274248 None:intergenic
TTCTGCATATTCGTCTCCGG+TGG 0.623722 3:-59274946 None:intergenic
AAACCAATACTTACCCACTC+AGG 0.625683 3:-59274915 None:intergenic
AGGGTATAATGACGAACCAA+AGG 0.628156 3:-59274861 None:intergenic
AGGTAGTTTCGGCATCACCT+TGG 0.636564 3:-59274359 None:intergenic
GGATAGCAAAACCGGAAGCG+TGG 0.638962 3:+59274461 MsG0380014748.01.T01:CDS
AATACTTATAATGTTGCAGA+CGG 0.651921 3:+59274525 MsG0380014748.01.T01:CDS
CCGAAATCAAATAGTCAAGG+AGG 0.672933 3:+59274582 MsG0380014748.01.T01:CDS
TTCCAAACTCCAAGGCACAG+TGG 0.696784 3:-59274766 None:intergenic
ATGCCGAAACTACCTCAACA+GGG 0.739522 3:+59274367 MsG0380014748.01.T01:CDS
AGGGAAGTTAGAACTCACCA+AGG 0.743994 3:+59274386 MsG0380014748.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAGTTTGGAAAATAATAAAA+AGG + Chr3:59274779-59274798 MsG0380014748.01.T01:CDS 20.0%
! AAAAAGGCTAATGTTGTTAT+AGG + Chr3:59274795-59274814 MsG0380014748.01.T01:CDS 25.0%
! AAAAGGCTAATGTTGTTATA+GGG + Chr3:59274796-59274815 MsG0380014748.01.T01:CDS 25.0%
! AATACTTATAATGTTGCAGA+CGG + Chr3:59274525-59274544 MsG0380014748.01.T01:CDS 25.0%
! AATGTTGTTATAGGGTTTAA+TGG + Chr3:59274804-59274823 MsG0380014748.01.T01:CDS 25.0%
! ACACTTTCTATAATGTTGAT+TGG + Chr3:59274670-59274689 MsG0380014748.01.T01:CDS 25.0%
! TCTGCAACATTATAAGTATT+AGG - Chr3:59274525-59274544 None:intergenic 25.0%
!! CACTTTCTATAATGTTGATT+GGG + Chr3:59274671-59274690 MsG0380014748.01.T01:CDS 25.0%
!! TTATTATTTTCCAAACTCCA+AGG - Chr3:59274777-59274796 None:intergenic 25.0%
AGAATCAATTCAAACTGTTG+CGG + Chr3:59274638-59274657 MsG0380014748.01.T01:CDS 30.0%
TACCTTCACCTTTACAATAA+CGG + Chr3:59274497-59274516 MsG0380014748.01.T01:CDS 30.0%
TAGCAAGATGAAGAATGTTA+AGG - Chr3:59274262-59274281 None:intergenic 30.0%
TGTTGATGTTGAATATCCTT+TGG + Chr3:59274845-59274864 MsG0380014748.01.T01:CDS 30.0%
TTTGATTCAAAGTTGAACCT+AGG + Chr3:59274990-59275009 MsG0380014748.01.T01:CDS 30.0%
! CAACAGTTTGAATTGATTCT+TGG - Chr3:59274638-59274657 None:intergenic 30.0%
! CATTGATGATATCAAAACCT+AGG - Chr3:59275010-59275029 None:intergenic 30.0%
!!! CAGAACATGATATTTTTTCG+TGG + Chr3:59274964-59274983 MsG0380014748.01.T01:CDS 30.0%
ATCAACACTCAACACATTTG+TGG - Chr3:59274832-59274851 None:intergenic 35.0%
CAAAAGAATCTCATCTTCCA+AGG + Chr3:59274342-59274361 MsG0380014748.01.T01:CDS 35.0%
GATGAAGAATGTTAAGGAGA+TGG - Chr3:59274256-59274275 None:intergenic 35.0%
TGCTATCCCAAATGTGAATA+GGG - Chr3:59274449-59274468 None:intergenic 35.0%
TTGAACAGAGCTTGAAACAT+TGG - Chr3:59275033-59275052 None:intergenic 35.0%
TTGCTATCCCAAATGTGAAT+AGG - Chr3:59274450-59274469 None:intergenic 35.0%
! AAGATGAGATTCTTTTGGTC+TGG - Chr3:59274339-59274358 None:intergenic 35.0%
! AGATGAGATTCTTTTGGTCT+GGG - Chr3:59274338-59274357 None:intergenic 35.0%
! CCTCCTTGACTATTTGATTT+CGG - Chr3:59274585-59274604 None:intergenic 35.0%
! CTACTTATATTTCCGGGTTT+TGG - Chr3:59274699-59274718 None:intergenic 35.0%
! CTTGGAAGATGAGATTCTTT+TGG - Chr3:59274344-59274363 None:intergenic 35.0%
! GACAAACTTTGTGATGGAAA+AGG - Chr3:59274316-59274335 None:intergenic 35.0%
!! ACCTGTGCTACTTATATTTC+CGG - Chr3:59274706-59274725 None:intergenic 35.0%
!! CTTCATCTTGCTATTGAACA+AGG + Chr3:59274269-59274288 MsG0380014748.01.T01:CDS 35.0%
!! TTTTGCTATCGAAAACTCCA+AGG - Chr3:59274611-59274630 None:intergenic 35.0%
AAACCAATACTTACCCACTC+AGG - Chr3:59274918-59274937 None:intergenic 40.0%
AAGGCAGTCAAGAACTCTAT+TGG + Chr3:59274405-59274424 MsG0380014748.01.T01:CDS 40.0%
AAGTCATGTTGTGCCTTTGA+AGG + Chr3:59274884-59274903 MsG0380014748.01.T01:CDS 40.0%
AATAGAGTTCTTGACTGCCT+TGG - Chr3:59274406-59274425 None:intergenic 40.0%
AATAGTCAAGGAGGATACCT+TGG + Chr3:59274591-59274610 MsG0380014748.01.T01:CDS 40.0%
AGAATGTTAAGGAGATGGAG+AGG - Chr3:59274251-59274270 None:intergenic 40.0%
AGGGTATAATGACGAACCAA+AGG - Chr3:59274864-59274883 None:intergenic 40.0%
ATGTTCTGCATATTCGTCTC+CGG - Chr3:59274952-59274971 None:intergenic 40.0%
ATTCTGCCCCTATTCACATT+TGG + Chr3:59274439-59274458 MsG0380014748.01.T01:CDS 40.0%
CAGCCGAAATCAAATAGTCA+AGG + Chr3:59274579-59274598 MsG0380014748.01.T01:CDS 40.0%
CCGAAATCAAATAGTCAAGG+AGG + Chr3:59274582-59274601 MsG0380014748.01.T01:CDS 40.0%
GATTTCGGCTGAGTATCAAT+CGG - Chr3:59274570-59274589 None:intergenic 40.0%
GCTATCCCAAATGTGAATAG+GGG - Chr3:59274448-59274467 None:intergenic 40.0%
TCAGGAACAACATCCTTCAA+AGG - Chr3:59274900-59274919 None:intergenic 40.0%
TTCTGCCCCTATTCACATTT+GGG + Chr3:59274440-59274459 MsG0380014748.01.T01:CDS 40.0%
! ATTAGGCGCCGTTATTGTAA+AGG - Chr3:59274508-59274527 None:intergenic 40.0%
! CAAAGGCACAACATGACTTA+GGG - Chr3:59274883-59274902 None:intergenic 40.0%
! CACATTTGGGATAGCAAAAC+CGG + Chr3:59274453-59274472 MsG0380014748.01.T01:CDS 40.0%
! TCAAAGGCACAACATGACTT+AGG - Chr3:59274884-59274903 None:intergenic 40.0%
!! CCTGTGCTACTTATATTTCC+GGG - Chr3:59274705-59274724 None:intergenic 40.0%
!! GTGGGTAAGTATTGGTTTCT+CGG + Chr3:59274920-59274939 MsG0380014748.01.T01:CDS 40.0%
AATCGATAACCACTGTGCCT+TGG + Chr3:59274757-59274776 MsG0380014748.01.T01:CDS 45.0%
AGGGAAGTTAGAACTCACCA+AGG + Chr3:59274386-59274405 MsG0380014748.01.T01:CDS 45.0%
AGTAGCACAGGTCGACATAT+TGG + Chr3:59274714-59274733 MsG0380014748.01.T01:CDS 45.0%
ATGCCGAAACTACCTCAACA+GGG + Chr3:59274367-59274386 MsG0380014748.01.T01:CDS 45.0%
CCCGGAAATATAAGTAGCAC+AGG + Chr3:59274702-59274721 MsG0380014748.01.T01:CDS 45.0%
CGCCGTTATTGTAAAGGTGA+AGG - Chr3:59274502-59274521 None:intergenic 45.0%
CTTCCCTGTTGAGGTAGTTT+CGG - Chr3:59274373-59274392 None:intergenic 45.0%
GAAGGATGTTGTTCCTGAGT+GGG + Chr3:59274902-59274921 MsG0380014748.01.T01:CDS 45.0%
GAGGATAAAAGAGACGTTGG+AGG - Chr3:59274232-59274251 None:intergenic 45.0%
GGAGAGGATAAAAGAGACGT+TGG - Chr3:59274235-59274254 None:intergenic 45.0%
GTTCCTGAGTGGGTAAGTAT+TGG + Chr3:59274912-59274931 MsG0380014748.01.T01:CDS 45.0%
GTTGATTGGGATCCAAAACC+CGG + Chr3:59274684-59274703 MsG0380014748.01.T01:CDS 45.0%
TGAAGGATGTTGTTCCTGAG+TGG + Chr3:59274901-59274920 MsG0380014748.01.T01:CDS 45.0%
TTCAAAGTTAGCCACGCTTC+CGG - Chr3:59274475-59274494 None:intergenic 45.0%
! GAGTTCTAACTTCCCTGTTG+AGG - Chr3:59274382-59274401 None:intergenic 45.0%
! GTCTGGGACAAACTTTGTGA+TGG - Chr3:59274322-59274341 None:intergenic 45.0%
AACCACTGTGCCTTGGAGTT+TGG + Chr3:59274764-59274783 MsG0380014748.01.T01:CDS 50.0%
AGGTAGTTTCGGCATCACCT+TGG - Chr3:59274362-59274381 None:intergenic 50.0%
GATGCCGAAACTACCTCAAC+AGG + Chr3:59274366-59274385 MsG0380014748.01.T01:CDS 50.0%
TTCCAAACTCCAAGGCACAG+TGG - Chr3:59274769-59274788 None:intergenic 50.0%
TTCTGCATATTCGTCTCCGG+TGG - Chr3:59274949-59274968 None:intergenic 50.0%
GGATAGCAAAACCGGAAGCG+TGG + Chr3:59274461-59274480 MsG0380014748.01.T01:CDS 55.0%
! ATTGGTTTCTCGGCTGCCAC+CGG + Chr3:59274930-59274949 MsG0380014748.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr3 gene 59274222 59275061 59274222 ID=MsG0380014748.01;Name=MsG0380014748.01
Chr3 mRNA 59274222 59275061 59274222 ID=MsG0380014748.01.T01;Parent=MsG0380014748.01;Name=MsG0380014748.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|279
Chr3 exon 59274222 59275061 59274222 ID=MsG0380014748.01.T01:exon:11533;Parent=MsG0380014748.01.T01
Chr3 CDS 59274222 59275061 59274222 ID=MsG0380014748.01.T01:cds;Parent=MsG0380014748.01.T01
Gene Sequence

>MsG0380014748.01.T01

ATGTCTTCCTCCAACGTCTCTTTTATCCTCTCCATCTCCTTAACATTCTTCATCTTGCTATTGAACAAGGTGAATTCAGCAGAAACAACTTCCTTTTCCATCACAAAGTTTGTCCCAGACCAAAAGAATCTCATCTTCCAAGGTGATGCCGAAACTACCTCAACAGGGAAGTTAGAACTCACCAAGGCAGTCAAGAACTCTATTGGTAGAACTCTTTATTCTGCCCCTATTCACATTTGGGATAGCAAAACCGGAAGCGTGGCTAACTTTGAAACTACCTTCACCTTTACAATAACGGCGCCTAATACTTATAATGTTGCAGACGGTCTTGCATTCTTCATTGCACCGATTGATACTCAGCCGAAATCAAATAGTCAAGGAGGATACCTTGGAGTTTTCGATAGCAAAACTTACCAAGAATCAATTCAAACTGTTGCGGTTGAAATTGACACTTTCTATAATGTTGATTGGGATCCAAAACCCGGAAATATAAGTAGCACAGGTCGACATATTGGAATCAATGTAAACTCTATCAAATCGATAACCACTGTGCCTTGGAGTTTGGAAAATAATAAAAAGGCTAATGTTGTTATAGGGTTTAATGGTGCCACAAATGTGTTGAGTGTTGATGTTGAATATCCTTTGGTTCGTCATTATACCCTAAGTCATGTTGTGCCTTTGAAGGATGTTGTTCCTGAGTGGGTAAGTATTGGTTTCTCGGCTGCCACCGGAGACGAATATGCAGAACATGATATTTTTTCGTGGTCTTTTGATTCAAAGTTGAACCTAGGTTTTGATATCATCAATGCCAATGTTTCAAGCTCTGTTCAAGATGCATAG
Protein sequence

>MsG0380014748.01.T01

MSSSNVSFILSISLTFFILLLNKVNSAETTSFSITKFVPDQKNLIFQGDAETTSTGKLELTKAVKNSIGRTLYSAPIHIWDSKTGSVANFETTFTFTITAPNTYNVADGLAFFIAPIDTQPKSNSQGGYLGVFDSKTYQESIQTVAVEIDTFYNVDWDPKPGNISSTGRHIGINVNSIKSITTVPWSLENNKKANVVIGFNGATNVLSVDVEYPLVRHYTLSHVVPLKDVVPEWVSIGFSAATGDEYAEHDIFSWSFDSKLNLGFDIINANVSSSVQDA*