Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014272.01.T01 | XP_013459893.2 | 90.588 | 255 | 24 | 0 | 1 | 255 | 5 | 259 | 2.33E-163 | 462 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014272.01.T01 | Q41160 | 57.2 | 250 | 103 | 3 | 7 | 254 | 8 | 255 | 4.39E-93 | 278 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014272.01.T01 | I3SV11 | 90.588 | 255 | 24 | 0 | 1 | 255 | 5 | 259 | 1.12e-163 | 462 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180003372.01 | MsG0380014272.01 | 0.806602 | 7.596924e-50 | 4.140638e-47 |
| MsG0280011016.01 | MsG0380014272.01 | 0.805142 | 1.539968e-49 | 8.085573e-47 |
| MsG0380013212.01 | MsG0380014272.01 | 0.801936 | 7.115771e-49 | 3.441302e-46 |
| MsG0380013239.01 | MsG0380014272.01 | 0.802303 | 5.981875e-49 | 2.920306e-46 |
| MsG0380014272.01 | MsG0580025193.01 | 0.801407 | 9.134604e-49 | 4.358928e-46 |
| MsG0380014272.01 | MsG0880046166.01 | 0.802488 | 5.478145e-49 | 2.686820e-46 |
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014272.01.T01 | MTR_3g054170 | 90.588 | 255 | 24 | 0 | 1 | 255 | 1 | 255 | 3.59e-167 | 462 |
| MsG0380014272.01.T01 | MTR_3g054180 | 82.101 | 257 | 44 | 1 | 1 | 255 | 5 | 261 | 6.71e-148 | 414 |
| MsG0380014272.01.T01 | MTR_3g054200 | 79.608 | 255 | 52 | 0 | 1 | 255 | 1 | 255 | 1.42e-146 | 410 |
| MsG0380014272.01.T01 | MTR_1g090973 | 51.793 | 251 | 117 | 3 | 7 | 254 | 11 | 260 | 5.06e-88 | 262 |
| MsG0380014272.01.T01 | MTR_3g047140 | 52.590 | 251 | 116 | 2 | 7 | 254 | 11 | 261 | 1.54e-82 | 249 |
| MsG0380014272.01.T01 | MTR_0684s0020 | 52.800 | 250 | 115 | 2 | 7 | 254 | 11 | 259 | 8.99e-81 | 244 |
| MsG0380014272.01.T01 | MTR_0163s0020 | 52.800 | 250 | 115 | 2 | 7 | 254 | 12 | 260 | 9.58e-81 | 244 |
| MsG0380014272.01.T01 | MTR_1g090943 | 50.769 | 260 | 116 | 5 | 5 | 254 | 3 | 260 | 3.71e-77 | 235 |
| MsG0380014272.01.T01 | MTR_1g090960 | 48.438 | 256 | 90 | 4 | 7 | 255 | 11 | 231 | 1.35e-71 | 219 |
| MsG0380014272.01.T01 | MTR_3g027280 | 51.210 | 248 | 103 | 7 | 18 | 253 | 24 | 265 | 1.81e-70 | 218 |
| MsG0380014272.01.T01 | MTR_1g090937 | 46.721 | 244 | 109 | 8 | 18 | 251 | 24 | 256 | 7.15e-63 | 198 |
| MsG0380014272.01.T01 | MTR_1g090957 | 47.984 | 248 | 99 | 8 | 18 | 253 | 24 | 253 | 2.16e-62 | 197 |
| MsG0380014272.01.T01 | MTR_1g090930 | 47.266 | 256 | 110 | 9 | 12 | 253 | 18 | 262 | 1.23e-59 | 191 |
| MsG0380014272.01.T01 | MTR_4g023810 | 43.103 | 232 | 125 | 5 | 26 | 254 | 27 | 254 | 8.13e-43 | 146 |
| MsG0380014272.01.T01 | MTR_8g023510 | 38.189 | 254 | 150 | 5 | 7 | 255 | 9 | 260 | 1.51e-40 | 141 |
| MsG0380014272.01.T01 | MTR_8g068040 | 36.220 | 254 | 145 | 8 | 16 | 254 | 10 | 261 | 6.76e-40 | 139 |
| MsG0380014272.01.T01 | MTR_5g031160 | 38.306 | 248 | 132 | 8 | 26 | 254 | 42 | 287 | 1.94e-38 | 135 |
| MsG0380014272.01.T01 | MTR_5g031120 | 38.934 | 244 | 127 | 7 | 31 | 254 | 38 | 279 | 2.11e-38 | 135 |
| MsG0380014272.01.T01 | MTR_8g068030 | 35.271 | 258 | 146 | 7 | 16 | 254 | 10 | 265 | 2.18e-38 | 135 |
| MsG0380014272.01.T01 | MTR_5g031140 | 36.735 | 245 | 134 | 7 | 29 | 254 | 44 | 286 | 2.03e-36 | 130 |
| MsG0380014272.01.T01 | MTR_5g031100 | 37.860 | 243 | 130 | 7 | 31 | 254 | 38 | 278 | 1.43e-35 | 128 |
| MsG0380014272.01.T01 | MTR_8g067980 | 37.712 | 236 | 129 | 8 | 33 | 253 | 26 | 258 | 3.05e-34 | 124 |
| MsG0380014272.01.T01 | MTR_5g031090 | 37.449 | 243 | 129 | 9 | 33 | 254 | 35 | 275 | 8.98e-34 | 123 |
| MsG0380014272.01.T01 | MTR_8g068050 | 33.462 | 260 | 156 | 6 | 11 | 255 | 17 | 274 | 1.08e-33 | 129 |
| MsG0380014272.01.T01 | MTR_8g067990 | 37.021 | 235 | 130 | 9 | 33 | 252 | 26 | 257 | 6.40e-32 | 118 |
| MsG0380014272.01.T01 | MTR_4g056360 | 37.500 | 224 | 102 | 7 | 33 | 252 | 42 | 231 | 3.97e-31 | 116 |
| MsG0380014272.01.T01 | MTR_5g031030 | 35.146 | 239 | 136 | 7 | 33 | 254 | 38 | 274 | 5.38e-31 | 116 |
| MsG0380014272.01.T01 | MTR_8g067720 | 33.195 | 241 | 149 | 6 | 25 | 254 | 18 | 257 | 3.30e-30 | 119 |
| MsG0380014272.01.T01 | MTR_4g093080 | 33.333 | 261 | 154 | 8 | 6 | 254 | 7 | 259 | 9.12e-30 | 117 |
| MsG0380014272.01.T01 | MTR_8g067735 | 34.746 | 236 | 138 | 8 | 34 | 255 | 46 | 279 | 1.04e-29 | 117 |
| MsG0380014272.01.T01 | MTR_4g056320 | 34.529 | 223 | 105 | 6 | 33 | 252 | 43 | 227 | 2.06e-29 | 111 |
| MsG0380014272.01.T01 | MTR_8g067630 | 32.900 | 231 | 143 | 6 | 34 | 252 | 33 | 263 | 2.87e-27 | 110 |
| MsG0380014272.01.T01 | MTR_8g067960 | 33.740 | 246 | 142 | 9 | 25 | 254 | 1 | 241 | 5.72e-27 | 104 |
| MsG0380014272.01.T01 | MTR_8g067690 | 36.923 | 195 | 111 | 5 | 71 | 254 | 101 | 294 | 1.18e-26 | 108 |
| MsG0380014272.01.T01 | MTR_7g115740 | 32.031 | 256 | 146 | 11 | 19 | 254 | 13 | 260 | 4.13e-26 | 107 |
| MsG0380014272.01.T01 | MTR_8g067930 | 32.340 | 235 | 143 | 8 | 34 | 254 | 27 | 259 | 1.89e-25 | 105 |
| MsG0380014272.01.T01 | MTR_4g093140 | 33.333 | 243 | 146 | 8 | 25 | 254 | 25 | 264 | 2.09e-25 | 105 |
| MsG0380014272.01.T01 | MTR_8g067940 | 32.593 | 270 | 153 | 11 | 10 | 254 | 16 | 281 | 2.53e-25 | 101 |
| MsG0380014272.01.T01 | MTR_4g093110 | 33.333 | 243 | 146 | 8 | 25 | 254 | 25 | 264 | 7.14e-25 | 103 |
| MsG0380014272.01.T01 | MTR_1g014240 | 33.838 | 198 | 116 | 5 | 71 | 254 | 79 | 275 | 8.94e-25 | 103 |
| MsG0380014272.01.T01 | MTR_4g093070 | 32.231 | 242 | 152 | 4 | 25 | 254 | 25 | 266 | 2.19e-24 | 102 |
| MsG0380014272.01.T01 | MTR_3g463370 | 33.208 | 265 | 123 | 8 | 1 | 254 | 1 | 222 | 3.71e-24 | 97.4 |
| MsG0380014272.01.T01 | MTR_7g116130 | 30.078 | 256 | 157 | 10 | 16 | 254 | 11 | 261 | 2.74e-22 | 95.9 |
| MsG0380014272.01.T01 | MTR_4g093040 | 31.624 | 234 | 137 | 9 | 19 | 233 | 21 | 250 | 2.24e-20 | 90.5 |
| MsG0380014272.01.T01 | MTR_4g093050 | 30.924 | 249 | 133 | 13 | 33 | 253 | 28 | 265 | 9.34e-19 | 85.9 |
| MsG0380014272.01.T01 | MTR_4g093040 | 36.310 | 168 | 90 | 7 | 81 | 233 | 3 | 168 | 1.47e-17 | 82.0 |
| MsG0380014272.01.T01 | MTR_1g048360 | 30.583 | 206 | 126 | 5 | 58 | 252 | 61 | 260 | 1.28e-16 | 79.3 |
| MsG0380014272.01.T01 | MTR_7g062750 | 28.185 | 259 | 158 | 8 | 15 | 250 | 5 | 258 | 1.95e-16 | 79.0 |
| MsG0380014272.01.T01 | MTR_5g025020 | 31.383 | 188 | 110 | 5 | 65 | 234 | 82 | 268 | 7.76e-16 | 77.0 |
| MsG0380014272.01.T01 | MTR_7g062940 | 28.405 | 257 | 159 | 8 | 15 | 251 | 5 | 256 | 4.26e-15 | 75.1 |
| MsG0380014272.01.T01 | MTR_7g063030 | 30.736 | 231 | 135 | 7 | 42 | 251 | 35 | 261 | 6.02e-15 | 74.3 |
| MsG0380014272.01.T01 | MTR_7g063030 | 29.615 | 260 | 152 | 9 | 18 | 251 | 1 | 255 | 1.29e-14 | 73.6 |
| MsG0380014272.01.T01 | MTR_7g062890 | 30.268 | 261 | 150 | 12 | 15 | 251 | 5 | 257 | 2.78e-13 | 69.7 |
| MsG0380014272.01.T01 | MTR_5g095970 | 30.172 | 232 | 136 | 9 | 34 | 250 | 25 | 245 | 1.16e-12 | 67.8 |
| MsG0380014272.01.T01 | MTR_5g077100 | 29.245 | 212 | 130 | 7 | 55 | 254 | 49 | 252 | 1.61e-12 | 67.4 |
| MsG0380014272.01.T01 | MTR_3g007870 | 29.741 | 232 | 137 | 9 | 34 | 250 | 25 | 245 | 1.69e-12 | 67.4 |
| MsG0380014272.01.T01 | MTR_7g063010 | 29.075 | 227 | 143 | 5 | 42 | 251 | 32 | 257 | 2.27e-12 | 67.0 |
| MsG0380014272.01.T01 | MTR_7g062770 | 25.954 | 262 | 167 | 8 | 12 | 250 | 3 | 260 | 5.92e-12 | 65.5 |
| MsG0380014272.01.T01 | MTR_2g090410 | 26.119 | 268 | 163 | 11 | 12 | 253 | 706 | 964 | 3.49e-11 | 63.5 |
| MsG0380014272.01.T01 | MTR_7g062700 | 28.462 | 260 | 156 | 10 | 16 | 251 | 6 | 259 | 4.94e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014272.01.T01 | AT5G10530 | 36.735 | 245 | 125 | 13 | 31 | 254 | 19 | 254 | 3.00e-28 | 113 |
| MsG0380014272.01.T01 | AT5G65600 | 32.870 | 216 | 129 | 7 | 34 | 233 | 38 | 253 | 7.68e-24 | 100 |
| MsG0380014272.01.T01 | AT2G37710 | 29.098 | 244 | 151 | 7 | 27 | 250 | 20 | 261 | 4.74e-17 | 80.9 |
| MsG0380014272.01.T01 | AT5G55830 | 28.846 | 260 | 156 | 11 | 16 | 253 | 15 | 267 | 2.76e-15 | 75.5 |
| MsG0380014272.01.T01 | AT3G53810 | 27.039 | 233 | 149 | 6 | 25 | 237 | 18 | 249 | 2.95e-14 | 72.4 |
| MsG0380014272.01.T01 | AT4G02420 | 27.016 | 248 | 152 | 8 | 9 | 233 | 3 | 244 | 3.23e-14 | 72.4 |
| MsG0380014272.01.T01 | AT2G29220 | 25.564 | 266 | 168 | 8 | 8 | 250 | 3 | 261 | 8.38e-13 | 68.2 |
| MsG0380014272.01.T01 | AT5G01560 | 28.163 | 245 | 150 | 7 | 34 | 252 | 30 | 274 | 9.33e-13 | 68.2 |
| MsG0380014272.01.T01 | AT2G29250 | 26.217 | 267 | 166 | 9 | 8 | 251 | 4 | 262 | 1.73e-12 | 67.4 |
| MsG0380014272.01.T01 | AT5G03140 | 28.155 | 206 | 133 | 6 | 55 | 248 | 55 | 257 | 5.47e-12 | 65.9 |
| MsG0380014272.01.T01 | AT4G02410 | 25.703 | 249 | 157 | 8 | 25 | 250 | 20 | 263 | 9.48e-12 | 65.1 |
| MsG0380014272.01.T01 | AT5G01550 | 25.357 | 280 | 165 | 9 | 12 | 252 | 16 | 290 | 9.80e-12 | 65.1 |
| MsG0380014272.01.T01 | AT4G04960 | 35.417 | 144 | 86 | 4 | 34 | 172 | 23 | 164 | 2.11e-11 | 63.9 |
| MsG0380014272.01.T01 | AT3G53380 | 29.880 | 251 | 155 | 10 | 10 | 248 | 3 | 244 | 2.91e-11 | 63.5 |
| MsG0380014272.01.T01 | AT4G04960 | 35.417 | 144 | 86 | 4 | 34 | 172 | 23 | 164 | 2.96e-11 | 63.5 |
| MsG0380014272.01.T01 | AT5G01540 | 25.000 | 256 | 162 | 6 | 26 | 252 | 24 | 278 | 3.21e-11 | 63.5 |
| MsG0380014272.01.T01 | AT1G70110 | 31.169 | 154 | 98 | 4 | 24 | 172 | 14 | 164 | 4.21e-11 | 63.2 |
Find 64 sgRNAs with CRISPR-Local
Find 68 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCCAATATGTGGATATT+TGG | 0.097321 | 3:-52231182 | None:intergenic |
| ATTCAAATCCAGTACCTATT+TGG | 0.139273 | 3:+52230933 | MsG0380014272.01.T01:CDS |
| ATTCCAATATGTGGATATTT+GGG | 0.332158 | 3:-52231181 | None:intergenic |
| AATGCTTTCAATCAATTTGT+TGG | 0.337022 | 3:+52231124 | MsG0380014272.01.T01:CDS |
| CGTCGCTTCCTTCTCCTTCA+CGG | 0.351878 | 3:+52230985 | MsG0380014272.01.T01:CDS |
| TTCAAATCCAGTACCTATTT+GGG | 0.355247 | 3:+52230934 | MsG0380014272.01.T01:CDS |
| CTGTTCTCCCACCGAACGTT+AGG | 0.356094 | 3:+52231371 | MsG0380014272.01.T01:CDS |
| CGTCCAGTACTAGGGGTAGA+AGG | 0.381092 | 3:-52230902 | None:intergenic |
| AATTGCAACACATTCATTCA+TGG | 0.387095 | 3:+52231431 | MsG0380014272.01.T01:CDS |
| CCAGGACAACACCATGGAAC+AGG | 0.392747 | 3:+52231227 | MsG0380014272.01.T01:CDS |
| GATCCCAAATATCCACATAT+TGG | 0.393490 | 3:+52231178 | MsG0380014272.01.T01:CDS |
| TTCCTTCTCCTTCACGGTTG+AGG | 0.396041 | 3:+52230991 | MsG0380014272.01.T01:CDS |
| TACAACACCCGTCCAGTACT+AGG | 0.401738 | 3:-52230911 | None:intergenic |
| AGTAATAGTTGCTCTCTTGC+TGG | 0.412342 | 3:+52230748 | MsG0380014272.01.T01:CDS |
| CCAGTAGTACTATCCCAAAT+AGG | 0.416374 | 3:-52230947 | None:intergenic |
| AATTTGACCATTGTTGTTAG+TGG | 0.417231 | 3:-52231317 | None:intergenic |
| ATGGTCTTTCACTTCAACCT+TGG | 0.440637 | 3:+52231450 | MsG0380014272.01.T01:CDS |
| GAACAGGGTGAGTGGGTCAT+TGG | 0.456672 | 3:+52231243 | MsG0380014272.01.T01:CDS |
| AGGTTTGCACCGTAAGAGTT+GGG | 0.458648 | 3:-52231082 | None:intergenic |
| TTATCTGCAACAGTTACATC+TGG | 0.461701 | 3:+52231400 | MsG0380014272.01.T01:CDS |
| CCTATTTGGGATAGTACTAC+TGG | 0.464887 | 3:+52230947 | MsG0380014272.01.T01:CDS |
| AACCCTTCTACCCCTAGTAC+TGG | 0.466872 | 3:+52230899 | MsG0380014272.01.T01:CDS |
| TTCACGGTTGAGGACTTTCG+AGG | 0.466937 | 3:+52231001 | MsG0380014272.01.T01:CDS |
| GACATTCCTCCCAACTCTTA+CGG | 0.472814 | 3:+52231073 | MsG0380014272.01.T01:CDS |
| GGACTTTCGAGGTTATAATC+AGG | 0.474533 | 3:+52231012 | MsG0380014272.01.T01:CDS |
| CCTGTTCCATGGTGTTGTCC+TGG | 0.479573 | 3:-52231227 | None:intergenic |
| GTACTATCCCAAATAGGTAC+TGG | 0.485197 | 3:-52230941 | None:intergenic |
| ATGAATGAATGTGTTGCAAT+TGG | 0.487840 | 3:-52231429 | None:intergenic |
| TTAACATCAATTCCAATATG+TGG | 0.514525 | 3:-52231190 | None:intergenic |
| TGTTCTCCCACCGAACGTTA+GGG | 0.518184 | 3:+52231372 | MsG0380014272.01.T01:CDS |
| GAGGTTTGCACCGTAAGAGT+TGG | 0.525841 | 3:-52231083 | None:intergenic |
| ACAACACCCGTCCAGTACTA+GGG | 0.530404 | 3:-52230910 | None:intergenic |
| GACCCACTCACCCTGTTCCA+TGG | 0.531299 | 3:-52231238 | None:intergenic |
| CTCCCACCGAACGTTAGGGT+TGG | 0.539338 | 3:+52231376 | MsG0380014272.01.T01:CDS |
| GATAAACCAACCCTAACGTT+CGG | 0.542247 | 3:-52231382 | None:intergenic |
| AACTCTTACGGTGCAAACCT+CGG | 0.563158 | 3:+52231085 | MsG0380014272.01.T01:CDS |
| CGAGGTTATAATCAGGCCGA+TGG | 0.567160 | 3:+52231019 | MsG0380014272.01.T01:CDS |
| AATGAATGTGTTGCAATTGG+CGG | 0.572386 | 3:-52231426 | None:intergenic |
| TTAACTCAGTAATTTCCGCC+AGG | 0.573107 | 3:+52231209 | MsG0380014272.01.T01:CDS |
| CACCATGGAACAGGGTGAGT+GGG | 0.576059 | 3:+52231236 | MsG0380014272.01.T01:CDS |
| GTCCTCAACCGTGAAGGAGA+AGG | 0.576848 | 3:-52230993 | None:intergenic |
| ACACCATGGAACAGGGTGAG+TGG | 0.579463 | 3:+52231235 | MsG0380014272.01.T01:CDS |
| TTCTACCCCTAGTACTGGAC+GGG | 0.581346 | 3:+52230904 | MsG0380014272.01.T01:CDS |
| AGTACTAGGGGTAGAAGGGT+TGG | 0.584402 | 3:-52230897 | None:intergenic |
| GGAGGAATGTCGCTGTCTTG+TGG | 0.587239 | 3:-52231061 | None:intergenic |
| AAATGATAATCTTGAAGACA+TGG | 0.597580 | 3:-52230708 | None:intergenic |
| CAATCTGATTTAATCATGCA+AGG | 0.610977 | 3:+52230836 | MsG0380014272.01.T01:CDS |
| GTCCAGTACTAGGGGTAGAA+GGG | 0.611247 | 3:-52230901 | None:intergenic |
| AACCAACCCTAACGTTCGGT+GGG | 0.611734 | 3:-52231378 | None:intergenic |
| CAGGACAACACCATGGAACA+GGG | 0.615749 | 3:+52231228 | MsG0380014272.01.T01:CDS |
| TCGAAAGTCCTCAACCGTGA+AGG | 0.618628 | 3:-52230999 | None:intergenic |
| AAACCAACCCTAACGTTCGG+TGG | 0.620337 | 3:-52231379 | None:intergenic |
| CTTCTACCCCTAGTACTGGA+CGG | 0.637229 | 3:+52230903 | MsG0380014272.01.T01:CDS |
| TCTGCAACAGTTACATCTGG+CGG | 0.638810 | 3:+52231403 | MsG0380014272.01.T01:CDS |
| AAGAAAGAAGATGATTCCAT+CGG | 0.660410 | 3:-52231035 | None:intergenic |
| GTTCCATGGTGTTGTCCTGG+CGG | 0.669311 | 3:-52231224 | None:intergenic |
| TTTCCGCCAGGACAACACCA+TGG | 0.669928 | 3:+52231221 | MsG0380014272.01.T01:CDS |
| GTAGGAGACCAATCATGCCA+AGG | 0.673324 | 3:-52231467 | None:intergenic |
| CAACACCCGTCCAGTACTAG+GGG | 0.673443 | 3:-52230909 | None:intergenic |
| ATATTTGGGATCATACACAT+TGG | 0.675730 | 3:-52231167 | None:intergenic |
| GTTGCTGCCACTAACAACAA+TGG | 0.677120 | 3:+52231310 | MsG0380014272.01.T01:CDS |
| TTTGCACCGTAAGAGTTGGG+AGG | 0.677768 | 3:-52231079 | None:intergenic |
| TTTGCGCATCAACTACTCCG+AGG | 0.701059 | 3:-52231102 | None:intergenic |
| GATTAAATCAGATTGACCAG+AGG | 0.734664 | 3:-52230828 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AATGCTTTCAATCAATTTGT+TGG | + | Chr3:52231124-52231143 | MsG0380014272.01.T01:CDS | 25.0% |
| ! | AATTCCAATATGTGGATATT+TGG | - | Chr3:52231185-52231204 | None:intergenic | 25.0% |
| ! | ATTCCAATATGTGGATATTT+GGG | - | Chr3:52231184-52231203 | None:intergenic | 25.0% |
| ! | TTAACATCAATTCCAATATG+TGG | - | Chr3:52231193-52231212 | None:intergenic | 25.0% |
| !!! | AGTACTGAGATTTTTTCAAA+TGG | + | Chr3:52230860-52230879 | MsG0380014272.01.T01:CDS | 25.0% |
| !!! | GATTTTTTCAAATGGGATAA+TGG | + | Chr3:52230868-52230887 | MsG0380014272.01.T01:CDS | 25.0% |
| !!! | GTACTGAGATTTTTTCAAAT+GGG | + | Chr3:52230861-52230880 | MsG0380014272.01.T01:CDS | 25.0% |
| AAGAAAGAAGATGATTCCAT+CGG | - | Chr3:52231038-52231057 | None:intergenic | 30.0% | |
| AATTGCAACACATTCATTCA+TGG | + | Chr3:52231431-52231450 | MsG0380014272.01.T01:CDS | 30.0% | |
| ATGAATGAATGTGTTGCAAT+TGG | - | Chr3:52231432-52231451 | None:intergenic | 30.0% | |
| ATTCAAATCCAGTACCTATT+TGG | + | Chr3:52230933-52230952 | MsG0380014272.01.T01:CDS | 30.0% | |
| CAATCTGATTTAATCATGCA+AGG | + | Chr3:52230836-52230855 | MsG0380014272.01.T01:CDS | 30.0% | |
| TTCAAATCCAGTACCTATTT+GGG | + | Chr3:52230934-52230953 | MsG0380014272.01.T01:CDS | 30.0% | |
| ! | AATTTGACCATTGTTGTTAG+TGG | - | Chr3:52231320-52231339 | None:intergenic | 30.0% |
| ! | ATATTTGGGATCATACACAT+TGG | - | Chr3:52231170-52231189 | None:intergenic | 30.0% |
| AATGAATGTGTTGCAATTGG+CGG | - | Chr3:52231429-52231448 | None:intergenic | 35.0% | |
| GACTTTCAAAAATTCACCTC+TGG | + | Chr3:52230812-52230831 | MsG0380014272.01.T01:CDS | 35.0% | |
| GATCCCAAATATCCACATAT+TGG | + | Chr3:52231178-52231197 | MsG0380014272.01.T01:CDS | 35.0% | |
| GATTAAATCAGATTGACCAG+AGG | - | Chr3:52230831-52230850 | None:intergenic | 35.0% | |
| TTATCTGCAACAGTTACATC+TGG | + | Chr3:52231400-52231419 | MsG0380014272.01.T01:CDS | 35.0% | |
| !! | GGTGAATTTTTGAAAGTCGA+AGG | - | Chr3:52230810-52230829 | None:intergenic | 35.0% |
| AGTAATAGTTGCTCTCTTGC+TGG | + | Chr3:52230748-52230767 | MsG0380014272.01.T01:CDS | 40.0% | |
| ATGGTCTTTCACTTCAACCT+TGG | + | Chr3:52231450-52231469 | MsG0380014272.01.T01:CDS | 40.0% | |
| CCAGTAGTACTATCCCAAAT+AGG | - | Chr3:52230950-52230969 | None:intergenic | 40.0% | |
| GATAAACCAACCCTAACGTT+CGG | - | Chr3:52231385-52231404 | None:intergenic | 40.0% | |
| GGACTTTCGAGGTTATAATC+AGG | + | Chr3:52231012-52231031 | MsG0380014272.01.T01:CDS | 40.0% | |
| GTACTATCCCAAATAGGTAC+TGG | - | Chr3:52230944-52230963 | None:intergenic | 40.0% | |
| TTAACTCAGTAATTTCCGCC+AGG | + | Chr3:52231209-52231228 | MsG0380014272.01.T01:CDS | 40.0% | |
| ! | CCTATTTGGGATAGTACTAC+TGG | + | Chr3:52230947-52230966 | MsG0380014272.01.T01:CDS | 40.0% |
| !! | GAAGGAAGTTGTTTTCTGAG+AGG | - | Chr3:52230792-52230811 | None:intergenic | 40.0% |
| AACTCTTACGGTGCAAACCT+CGG | + | Chr3:52231085-52231104 | MsG0380014272.01.T01:CDS | 45.0% | |
| AGGTTTGCACCGTAAGAGTT+GGG | - | Chr3:52231085-52231104 | None:intergenic | 45.0% | |
| GACATTCCTCCCAACTCTTA+CGG | + | Chr3:52231073-52231092 | MsG0380014272.01.T01:CDS | 45.0% | |
| GTTGCTGCCACTAACAACAA+TGG | + | Chr3:52231310-52231329 | MsG0380014272.01.T01:CDS | 45.0% | |
| TCTGCAACAGTTACATCTGG+CGG | + | Chr3:52231403-52231422 | MsG0380014272.01.T01:CDS | 45.0% | |
| AAACCAACCCTAACGTTCGG+TGG | - | Chr3:52231382-52231401 | None:intergenic | 50.0% | |
| AACCAACCCTAACGTTCGGT+GGG | - | Chr3:52231381-52231400 | None:intergenic | 50.0% | |
| AACCCTTCTACCCCTAGTAC+TGG | + | Chr3:52230899-52230918 | MsG0380014272.01.T01:CDS | 50.0% | |
| ACAACACCCGTCCAGTACTA+GGG | - | Chr3:52230913-52230932 | None:intergenic | 50.0% | |
| AGTACTAGGGGTAGAAGGGT+TGG | - | Chr3:52230900-52230919 | None:intergenic | 50.0% | |
| CAGGACAACACCATGGAACA+GGG | + | Chr3:52231228-52231247 | MsG0380014272.01.T01:CDS | 50.0% | |
| CGAGGTTATAATCAGGCCGA+TGG | + | Chr3:52231019-52231038 | MsG0380014272.01.T01:CDS | 50.0% | |
| GAGGTTTGCACCGTAAGAGT+TGG | - | Chr3:52231086-52231105 | None:intergenic | 50.0% | |
| GTCCAGTACTAGGGGTAGAA+GGG | - | Chr3:52230904-52230923 | None:intergenic | 50.0% | |
| TACAACACCCGTCCAGTACT+AGG | - | Chr3:52230914-52230933 | None:intergenic | 50.0% | |
| TCGAAAGTCCTCAACCGTGA+AGG | - | Chr3:52231002-52231021 | None:intergenic | 50.0% | |
| TGTTCTCCCACCGAACGTTA+GGG | + | Chr3:52231372-52231391 | MsG0380014272.01.T01:CDS | 50.0% | |
| TTCACGGTTGAGGACTTTCG+AGG | + | Chr3:52231001-52231020 | MsG0380014272.01.T01:CDS | 50.0% | |
| TTCCTTCTCCTTCACGGTTG+AGG | + | Chr3:52230991-52231010 | MsG0380014272.01.T01:CDS | 50.0% | |
| TTTGCACCGTAAGAGTTGGG+AGG | - | Chr3:52231082-52231101 | None:intergenic | 50.0% | |
| TTTGCGCATCAACTACTCCG+AGG | - | Chr3:52231105-52231124 | None:intergenic | 50.0% | |
| ! | CTTCTACCCCTAGTACTGGA+CGG | + | Chr3:52230903-52230922 | MsG0380014272.01.T01:CDS | 50.0% |
| ! | TTCTACCCCTAGTACTGGAC+GGG | + | Chr3:52230904-52230923 | MsG0380014272.01.T01:CDS | 50.0% |
| ACACCATGGAACAGGGTGAG+TGG | + | Chr3:52231235-52231254 | MsG0380014272.01.T01:CDS | 55.0% | |
| CAACACCCGTCCAGTACTAG+GGG | - | Chr3:52230912-52230931 | None:intergenic | 55.0% | |
| CACCATGGAACAGGGTGAGT+GGG | + | Chr3:52231236-52231255 | MsG0380014272.01.T01:CDS | 55.0% | |
| CCAGGACAACACCATGGAAC+AGG | + | Chr3:52231227-52231246 | MsG0380014272.01.T01:CDS | 55.0% | |
| CGTCCAGTACTAGGGGTAGA+AGG | - | Chr3:52230905-52230924 | None:intergenic | 55.0% | |
| CGTCGCTTCCTTCTCCTTCA+CGG | + | Chr3:52230985-52231004 | MsG0380014272.01.T01:CDS | 55.0% | |
| CTGTTCTCCCACCGAACGTT+AGG | + | Chr3:52231371-52231390 | MsG0380014272.01.T01:CDS | 55.0% | |
| GAACAGGGTGAGTGGGTCAT+TGG | + | Chr3:52231243-52231262 | MsG0380014272.01.T01:CDS | 55.0% | |
| GGAGGAATGTCGCTGTCTTG+TGG | - | Chr3:52231064-52231083 | None:intergenic | 55.0% | |
| GTCCTCAACCGTGAAGGAGA+AGG | - | Chr3:52230996-52231015 | None:intergenic | 55.0% | |
| TTTCCGCCAGGACAACACCA+TGG | + | Chr3:52231221-52231240 | MsG0380014272.01.T01:CDS | 55.0% | |
| !! | CCTGTTCCATGGTGTTGTCC+TGG | - | Chr3:52231230-52231249 | None:intergenic | 55.0% |
| !! | GTTCCATGGTGTTGTCCTGG+CGG | - | Chr3:52231227-52231246 | None:intergenic | 55.0% |
| CTCCCACCGAACGTTAGGGT+TGG | + | Chr3:52231376-52231395 | MsG0380014272.01.T01:CDS | 60.0% | |
| GACCCACTCACCCTGTTCCA+TGG | - | Chr3:52231241-52231260 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 52230710 | 52231477 | 52230710 | ID=MsG0380014272.01;Name=MsG0380014272.01 |
| Chr3 | mRNA | 52230710 | 52231477 | 52230710 | ID=MsG0380014272.01.T01;Parent=MsG0380014272.01;Name=MsG0380014272.01.T01;_AED=0.46;_eAED=0.46;_QI=0|-1|0|1|-1|1|1|0|255 |
| Chr3 | exon | 52230710 | 52231477 | 52230710 | ID=MsG0380014272.01.T01:exon:10218;Parent=MsG0380014272.01.T01 |
| Chr3 | CDS | 52230710 | 52231477 | 52230710 | ID=MsG0380014272.01.T01:cds;Parent=MsG0380014272.01.T01 |
| Gene Sequence |
| Protein sequence |
