AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880045217.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045217.01.T01 MTR_8g068040 94.656 262 14 0 1 262 1 262 4.80e-178 490
MsG0880045217.01.T01 MTR_8g068030 90.602 266 21 1 1 262 1 266 2.53e-170 471
MsG0880045217.01.T01 MTR_5g031120 47.541 244 113 4 29 261 40 279 1.75e-66 208
MsG0880045217.01.T01 MTR_5g031100 47.131 244 113 4 29 261 40 278 2.68e-66 207
MsG0880045217.01.T01 MTR_8g068050 46.124 258 131 4 10 262 20 274 3.83e-64 212
MsG0880045217.01.T01 MTR_5g031140 45.714 245 119 4 27 261 46 286 4.56e-64 202
MsG0880045217.01.T01 MTR_8g067980 51.230 244 102 9 26 260 23 258 3.69e-62 196
MsG0880045217.01.T01 MTR_5g031160 43.673 245 124 4 27 261 47 287 9.66e-62 196
MsG0880045217.01.T01 MTR_8g067990 52.500 240 97 8 29 259 26 257 3.82e-61 194
MsG0880045217.01.T01 MTR_5g031030 45.455 242 122 4 27 261 36 274 4.17e-58 186
MsG0880045217.01.T01 MTR_5g031090 44.309 246 123 5 27 261 33 275 6.69e-58 186
MsG0880045217.01.T01 MTR_8g067960 47.034 236 106 8 35 261 16 241 1.93e-53 173
MsG0880045217.01.T01 MTR_8g023510 38.723 235 132 6 29 261 35 259 1.50e-45 154
MsG0880045217.01.T01 MTR_4g093080 39.300 257 146 6 11 262 9 260 3.64e-44 159
MsG0880045217.01.T01 MTR_8g067735 41.079 241 131 7 27 261 43 278 1.32e-43 157
MsG0880045217.01.T01 MTR_4g023810 36.596 235 129 7 29 259 34 252 7.85e-43 147
MsG0880045217.01.T01 MTR_8g067690 38.819 237 141 3 27 261 60 294 1.49e-42 154
MsG0880045217.01.T01 MTR_8g067930 38.889 252 145 6 16 262 13 260 2.30e-42 153
MsG0880045217.01.T01 MTR_8g067720 38.075 239 141 5 27 262 24 258 3.96e-42 152
MsG0880045217.01.T01 MTR_0163s0020 36.538 260 145 7 10 262 15 261 7.93e-42 144
MsG0880045217.01.T01 MTR_0684s0020 36.538 260 145 7 10 262 14 260 9.07e-42 144
MsG0880045217.01.T01 MTR_8g067940 40.370 270 131 11 13 261 21 281 1.28e-41 144
MsG0880045217.01.T01 MTR_3g047140 37.786 262 141 8 10 262 14 262 1.76e-41 144
MsG0880045217.01.T01 MTR_1g014240 39.506 243 137 6 27 262 37 276 1.68e-40 148
MsG0880045217.01.T01 MTR_1g090973 36.742 264 140 10 10 262 14 261 2.61e-40 140
MsG0880045217.01.T01 MTR_3g054170 36.709 237 135 7 27 261 31 254 1.24e-39 138
MsG0880045217.01.T01 MTR_3g054180 35.366 246 140 8 21 261 29 260 4.47e-38 134
MsG0880045217.01.T01 MTR_3g054200 35.659 258 146 9 11 261 10 254 7.81e-36 128
MsG0880045217.01.T01 MTR_8g067630 38.117 223 123 5 27 242 30 244 2.17e-35 133
MsG0880045217.01.T01 MTR_7g115740 36.975 238 136 7 34 262 29 261 3.76e-34 130
MsG0880045217.01.T01 MTR_7g116130 38.793 232 122 8 41 261 39 261 5.33e-33 127
MsG0880045217.01.T01 MTR_4g093110 34.252 254 155 7 13 261 18 264 9.16e-33 126
MsG0880045217.01.T01 MTR_4g093140 33.465 254 157 7 13 261 18 264 5.17e-32 124
MsG0880045217.01.T01 MTR_4g093070 34.599 237 145 5 30 261 35 266 6.40e-31 121
MsG0880045217.01.T01 MTR_4g093040 36.992 246 142 7 13 250 19 259 4.62e-30 118
MsG0880045217.01.T01 MTR_3g027280 36.293 259 133 11 18 260 23 265 6.39e-30 114
MsG0880045217.01.T01 MTR_1g090943 32.601 273 155 12 1 259 1 258 6.74e-30 113
MsG0880045217.01.T01 MTR_3g463370 32.319 263 118 7 10 261 9 222 3.06e-28 108
MsG0880045217.01.T01 MTR_4g093040 40.556 180 101 5 74 250 1 177 4.39e-27 110
MsG0880045217.01.T01 MTR_1g090930 34.221 263 142 10 12 260 17 262 1.31e-26 105
MsG0880045217.01.T01 MTR_1g090960 32.824 262 117 10 10 259 14 228 2.06e-26 103
MsG0880045217.01.T01 MTR_1g090957 35.271 258 125 11 18 260 23 253 9.44e-26 102
MsG0880045217.01.T01 MTR_1g090937 35.019 257 132 12 18 260 23 258 1.08e-25 102
MsG0880045217.01.T01 MTR_4g093050 35.526 228 132 9 43 260 43 265 2.16e-24 102
MsG0880045217.01.T01 MTR_7g063030 31.641 256 148 9 23 258 7 255 1.49e-21 94.0
MsG0880045217.01.T01 MTR_8g068050 39.370 127 72 1 10 131 20 146 2.28e-21 93.6
MsG0880045217.01.T01 MTR_5g025020 35.577 208 120 9 58 255 78 281 3.66e-21 92.8
MsG0880045217.01.T01 MTR_7g063030 32.627 236 139 8 36 258 33 261 2.05e-20 90.9
MsG0880045217.01.T01 MTR_7g062940 28.099 242 157 7 28 258 21 256 1.63e-19 88.2
MsG0880045217.01.T01 MTR_7g062700 29.268 246 150 8 29 258 22 259 7.39e-19 86.3
MsG0880045217.01.T01 MTR_7g115740 36.424 151 82 6 34 172 29 177 2.03e-17 82.0
MsG0880045217.01.T01 MTR_5g035910 30.038 263 160 9 10 258 12 264 1.37e-16 79.7
MsG0880045217.01.T01 MTR_7g062890 26.996 263 172 8 11 262 8 261 2.28e-16 79.0
MsG0880045217.01.T01 MTR_7g062770 27.391 230 153 6 40 257 33 260 3.99e-16 78.2
MsG0880045217.01.T01 MTR_0015s0030 32.178 202 122 8 61 257 60 251 5.38e-16 77.8
MsG0880045217.01.T01 MTR_7g062680 28.226 248 159 8 29 262 22 264 8.39e-16 77.0
MsG0880045217.01.T01 MTR_2g090410 30.081 246 140 11 34 260 28 260 1.09e-15 77.0
MsG0880045217.01.T01 MTR_2g090410 29.572 257 159 10 15 260 719 964 1.22e-13 70.9
MsG0880045217.01.T01 MTR_7g063010 30.000 230 144 8 40 258 34 257 1.61e-15 76.3
MsG0880045217.01.T01 MTR_5g068770 28.826 281 164 12 11 262 7 280 1.71e-15 76.3
MsG0880045217.01.T01 MTR_2g013720 28.464 267 159 8 10 257 9 262 2.61e-15 75.9
MsG0880045217.01.T01 MTR_5g077100 29.279 222 137 7 46 261 45 252 8.94e-15 74.3
MsG0880045217.01.T01 MTR_7g062950 27.347 245 161 7 29 262 22 260 2.18e-14 73.2
MsG0880045217.01.T01 MTR_1g052275 28.512 242 157 8 29 258 22 259 5.79e-14 71.6
MsG0880045217.01.T01 MTR_7g062990 26.923 260 168 8 11 258 11 260 1.38e-13 70.5
MsG0880045217.01.T01 MTR_3g068025 27.239 268 170 8 11 258 6 268 1.77e-13 70.5
MsG0880045217.01.T01 MTR_7g062750 25.620 242 164 7 28 257 21 258 2.06e-13 70.1
MsG0880045217.01.T01 MTR_7g062920 27.200 250 158 8 29 262 22 263 1.07e-12 68.2
MsG0880045217.01.T01 MTR_7g062660 29.719 249 150 9 29 262 22 260 1.39e-12 67.8
MsG0880045217.01.T01 MTR_7g062900 24.464 233 161 6 38 262 31 256 1.90e-12 67.4
MsG0880045217.01.T01 MTR_7g062850 31.250 160 95 5 116 262 72 229 8.41e-12 64.7
MsG0880045217.01.T01 MTR_1g048360 28.700 223 140 7 43 259 51 260 1.77e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045217.01.T01 AT5G10530 36.923 260 145 8 13 262 5 255 8.68e-33 126
MsG0880045217.01.T01 AT5G65600 36.232 207 122 6 51 251 61 263 1.09e-23 100
MsG0880045217.01.T01 AT5G06740 32.787 244 131 11 34 258 40 269 2.05e-20 90.9
MsG0880045217.01.T01 AT5G06740 32.787 244 131 11 34 258 28 257 2.11e-20 90.9
MsG0880045217.01.T01 AT4G04960 32.068 237 144 6 30 255 23 253 2.05e-19 87.8
MsG0880045217.01.T01 AT4G04960 32.068 237 144 6 30 255 23 253 2.90e-19 87.4
MsG0880045217.01.T01 AT5G55830 29.434 265 167 12 10 260 9 267 4.10e-19 87.0
MsG0880045217.01.T01 AT4G02410 31.405 242 151 8 27 257 26 263 4.83e-19 86.7
MsG0880045217.01.T01 AT4G29050 32.420 219 133 7 51 258 45 259 1.36e-18 85.5
MsG0880045217.01.T01 AT4G29050 32.420 219 133 7 51 258 59 273 1.44e-18 85.5
MsG0880045217.01.T01 AT2G37710 29.437 231 144 6 40 257 37 261 3.74e-18 84.3
MsG0880045217.01.T01 AT4G02420 31.092 238 149 7 30 257 28 260 5.67e-17 80.9
MsG0880045217.01.T01 AT5G59260 28.980 245 152 7 35 259 33 275 3.01e-15 75.5
MsG0880045217.01.T01 AT5G03140 31.674 221 126 9 46 255 51 257 5.27e-15 75.1
MsG0880045217.01.T01 AT5G59270 29.675 246 145 9 36 259 37 276 1.51e-14 73.6
MsG0880045217.01.T01 AT2G29250 28.829 222 130 8 53 257 51 261 2.53e-14 72.8
MsG0880045217.01.T01 AT3G55550 28.049 246 152 8 30 260 26 261 5.69e-14 72.0
MsG0880045217.01.T01 AT1G70110 28.448 232 145 7 41 258 33 257 3.85e-13 69.3
MsG0880045217.01.T01 AT5G01540 26.908 249 160 9 30 259 33 278 1.62e-12 67.4
MsG0880045217.01.T01 AT2G29220 27.027 222 134 8 53 257 51 261 1.73e-12 67.4
MsG0880045217.01.T01 AT5G60320 27.881 269 162 13 10 260 11 265 8.44e-12 65.5
MsG0880045217.01.T01 AT4G28350 31.950 241 144 10 23 253 25 255 1.56e-11 64.7
MsG0880045217.01.T01 AT5G01550 27.953 254 152 10 30 259 44 290 1.80e-11 64.3
MsG0880045217.01.T01 AT3G53380 30.631 222 139 7 40 255 32 244 2.56e-11 63.9
MsG0880045217.01.T01 AT5G59270 32.065 184 106 7 36 206 37 214 2.81e-11 63.9
MsG0880045217.01.T01 AT5G59270 32.065 184 106 7 36 206 34 211 3.05e-11 63.5
MsG0880045217.01.T01 AT5G60270 27.711 249 148 12 30 261 26 259 5.77e-11 62.8

Find 74 sgRNAs with CRISPR-Local

Find 86 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCCTTTATTATTGATTTA+AGG 0.103961 8:+55941417 MsG0880045217.01.T01:CDS
CAACGGCAACAATTTGATTT+TGG 0.154322 8:-55941172 None:intergenic
AATTGCACAAGATTCTTTCT+TGG 0.235858 8:+55941498 MsG0880045217.01.T01:CDS
GGGGTGGACCAGTGCGTCTT+TGG 0.236394 8:+55940964 MsG0880045217.01.T01:CDS
ATTACCATCATTTCCTTCCT+TGG 0.320400 8:+55940792 MsG0880045217.01.T01:CDS
CAGCGTTGGTAGAGCCTCTT+GGG 0.325739 8:+55940944 MsG0880045217.01.T01:CDS
GAGGCTCTACCAACGCTGTT+TGG 0.341000 8:-55940939 None:intergenic
AACCCAATTCTAACCCATTC+AGG 0.343697 8:-55941449 None:intergenic
AGGCTCTACCAACGCTGTTT+GGG 0.356529 8:-55940938 None:intergenic
ATTCCTTTGGTGGAAATCCT+TGG 0.362413 8:+55941201 MsG0880045217.01.T01:CDS
CCTACCGGCCCCGGACTCTT+TGG 0.365553 8:+55941044 MsG0880045217.01.T01:CDS
GAAACCATTTGCAACACTTC+CGG 0.368968 8:-55941294 None:intergenic
GGGTGGACCAGTGCGTCTTT+GGG 0.369247 8:+55940965 MsG0880045217.01.T01:CDS
TTCCTTTGGTGGAAATCCTT+GGG 0.370789 8:+55941202 MsG0880045217.01.T01:CDS
GCCGTTGAATTTGATTCCTT+TGG 0.377073 8:+55941188 MsG0880045217.01.T01:CDS
AGAAAAGACGGAAGTGAATC+TGG 0.380784 8:-55941009 None:intergenic
AGTCCTTAAATCAATAATAA+AGG 0.389349 8:-55941420 None:intergenic
AAGGACTGTGTTACCTGAAT+GGG 0.409423 8:+55941436 MsG0880045217.01.T01:CDS
TTACCTGAATGGGTTAGAAT+TGG 0.411013 8:+55941446 MsG0880045217.01.T01:CDS
TACCTGAATGGGTTAGAATT+GGG 0.436070 8:+55941447 MsG0880045217.01.T01:CDS
TTGAGTGTCTGAGGTATTGA+TGG 0.437585 8:-55940760 None:intergenic
TAAGGACTGTGTTACCTGAA+TGG 0.438449 8:+55941435 MsG0880045217.01.T01:CDS
AATTCCATCTCCAAAGAGTC+CGG 0.470374 8:-55941054 None:intergenic
AGGAAATGATGGTAATGAAA+AGG 0.470493 8:-55940785 None:intergenic
ACAACAGCGCCATGGAAAAC+CGG 0.474841 8:+55941275 MsG0880045217.01.T01:CDS
GTTGAATTTGATTCCTTTGG+TGG 0.478637 8:+55941191 MsG0880045217.01.T01:CDS
TGATGTGAACTCTATTGCTT+CGG 0.487011 8:+55941250 MsG0880045217.01.T01:CDS
AATTCGAGCGGTGGAAACCT+TGG 0.488077 8:+55941116 MsG0880045217.01.T01:CDS
ACAGCGTTGGTAGAGCCTCT+TGG 0.492372 8:+55940943 MsG0880045217.01.T01:CDS
CCATTCACAAAATTGCCTCC+AGG 0.500015 8:-55941380 None:intergenic
TCTTTCGTAGTTGCACCTAC+CGG 0.501597 8:+55941029 MsG0880045217.01.T01:CDS
GATAGACCCGTCTGAAATGA+AGG 0.505115 8:-55940898 None:intergenic
TTCGGGATGTGGGAATTGAA+TGG 0.528951 8:-55941092 None:intergenic
ATCTCCAAAGAGTCCGGGGC+CGG 0.531082 8:-55941048 None:intergenic
AGTGTTGTGGTAAGATACCC+TGG 0.531216 8:+55941362 MsG0880045217.01.T01:CDS
ATTCCATCTCCAAAGAGTCC+GGG 0.532131 8:-55941053 None:intergenic
AAAACCGGAAGTGTTGCAAA+TGG 0.533724 8:+55941290 MsG0880045217.01.T01:CDS
CATTCACAAAATTGCCTCCA+GGG 0.540005 8:-55941379 None:intergenic
TAAACCAAGGAAGGAAATGA+TGG 0.543373 8:-55940796 None:intergenic
GTTGCCTTCGAGTTCAATGT+TGG 0.546598 8:-55940874 None:intergenic
ATTGAATGGTGCAATGAAGA+AGG 0.550942 8:-55941078 None:intergenic
GGCCCCGGACTCTTTGGAGA+TGG 0.559930 8:+55941050 MsG0880045217.01.T01:CDS
CCAAAGAGTCCGGGGCCGGT+AGG 0.566532 8:-55941044 None:intergenic
GTCTGAGGTATTGATGGCCA+TGG 0.569008 8:-55940754 None:intergenic
GTAGTTGCACCTACCGGCCC+CGG 0.572250 8:+55941035 MsG0880045217.01.T01:CDS
AGTGAATCTGGCAAGGTCAT+CGG 0.575771 8:-55940997 None:intergenic
ATTCTCAGCTAAACCAAGGA+AGG 0.576732 8:-55940805 None:intergenic
GAAAAGGATTTGAGTGTCTG+AGG 0.578585 8:-55940769 None:intergenic
TTGGGACGACATTTGTGAGA+TGG 0.580022 8:-55940920 None:intergenic
ATGCCAACATGGGGATACAC+TGG 0.582679 8:-55941227 None:intergenic
TTTCCGCGTTGAATAGTCCA+AGG 0.585701 8:-55941133 None:intergenic
TGTGCGTCCCAAAGACGCAC+TGG 0.587932 8:-55940972 None:intergenic
TGGGGATACACTGGATCCCA+AGG 0.588792 8:-55941218 None:intergenic
AGTTCACATCAATGCCAACA+TGG 0.590000 8:-55941238 None:intergenic
GGCAACGCCTTCATTTCAGA+CGG 0.592247 8:+55940891 MsG0880045217.01.T01:CDS
GCAACGCCTTCATTTCAGAC+GGG 0.592414 8:+55940892 MsG0880045217.01.T01:CDS
GATCCAGTGTATCCCCATGT+TGG 0.593245 8:+55941224 MsG0880045217.01.T01:CDS
ACCAAAGGAATCAAATTCAA+CGG 0.597273 8:-55941189 None:intergenic
GTTCACATCAATGCCAACAT+GGG 0.598694 8:-55941237 None:intergenic
CTTCGGTAACAACAGCGCCA+TGG 0.600721 8:+55941267 MsG0880045217.01.T01:CDS
TGCAACTACGAAAGAAAAGA+CGG 0.621796 8:-55941021 None:intergenic
GTTGGTAGAGCCTCTTGGGG+TGG 0.626236 8:+55940948 MsG0880045217.01.T01:CDS
AGACGGAAGTGAATCTGGCA+AGG 0.630149 8:-55941004 None:intergenic
ATAATTCACAAAAGCAATTG+CGG 0.630774 8:-55941318 None:intergenic
AAAACCAACATTGAACTCGA+AGG 0.636807 8:+55940870 MsG0880045217.01.T01:CDS
ATCCCAAGGATTTCCACCAA+AGG 0.638655 8:-55941204 None:intergenic
TTCCATCTCCAAAGAGTCCG+GGG 0.642837 8:-55941052 None:intergenic
ACGCACTGGTCCACCCCAAG+AGG 0.647273 8:-55940958 None:intergenic
AATGTCGTCCCAAACAGCGT+TGG 0.653029 8:+55940930 MsG0880045217.01.T01:CDS
TTCACATCAATGCCAACATG+GGG 0.673996 8:-55941236 None:intergenic
ATACATTCTCAGCTAAACCA+AGG 0.674272 8:-55940809 None:intergenic
AGCGTTGGTAGAGCCTCTTG+GGG 0.742698 8:+55940945 MsG0880045217.01.T01:CDS
AAACCTTGGACTATTCAACG+CGG 0.808136 8:+55941130 MsG0880045217.01.T01:CDS
GTTGTGGTAAGATACCCTGG+AGG 0.825858 8:+55941365 MsG0880045217.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTCCTTAAATCAATAATAA+AGG - Chr8:55941423-55941442 None:intergenic 20.0%
!!! TCTCCTTTATTATTGATTTA+AGG + Chr8:55941417-55941436 MsG0880045217.01.T01:CDS 20.0%
! ATAATTCACAAAAGCAATTG+CGG - Chr8:55941321-55941340 None:intergenic 25.0%
AATTGCACAAGATTCTTTCT+TGG + Chr8:55941498-55941517 MsG0880045217.01.T01:CDS 30.0%
ACCAAAGGAATCAAATTCAA+CGG - Chr8:55941192-55941211 None:intergenic 30.0%
! ACACTTAAATTTTTCTCCAC+AGG - Chr8:55941347-55941366 None:intergenic 30.0%
! AGGAAATGATGGTAATGAAA+AGG - Chr8:55940788-55940807 None:intergenic 30.0%
! GGAGAAAAATTTAAGTGTTG+TGG + Chr8:55941349-55941368 MsG0880045217.01.T01:CDS 30.0%
AAAACCAACATTGAACTCGA+AGG + Chr8:55940870-55940889 MsG0880045217.01.T01:CDS 35.0%
ATACATTCTCAGCTAAACCA+AGG - Chr8:55940812-55940831 None:intergenic 35.0%
ATTACCATCATTTCCTTCCT+TGG + Chr8:55940792-55940811 MsG0880045217.01.T01:CDS 35.0%
ATTGAATGGTGCAATGAAGA+AGG - Chr8:55941081-55941100 None:intergenic 35.0%
GTTGAATTTGATTCCTTTGG+TGG + Chr8:55941191-55941210 MsG0880045217.01.T01:CDS 35.0%
TAAACCAAGGAAGGAAATGA+TGG - Chr8:55940799-55940818 None:intergenic 35.0%
TGATGTGAACTCTATTGCTT+CGG + Chr8:55941250-55941269 MsG0880045217.01.T01:CDS 35.0%
TGCAACTACGAAAGAAAAGA+CGG - Chr8:55941024-55941043 None:intergenic 35.0%
! TTTTGTGAATTATGAGCCTG+TGG + Chr8:55941328-55941347 MsG0880045217.01.T01:CDS 35.0%
!! CAACGGCAACAATTTGATTT+TGG - Chr8:55941175-55941194 None:intergenic 35.0%
!! TACCTGAATGGGTTAGAATT+GGG + Chr8:55941447-55941466 MsG0880045217.01.T01:CDS 35.0%
!! TTACCTGAATGGGTTAGAAT+TGG + Chr8:55941446-55941465 MsG0880045217.01.T01:CDS 35.0%
AAACCTTGGACTATTCAACG+CGG + Chr8:55941130-55941149 MsG0880045217.01.T01:CDS 40.0%
AACCCAATTCTAACCCATTC+AGG - Chr8:55941452-55941471 None:intergenic 40.0%
AAGGACTGTGTTACCTGAAT+GGG + Chr8:55941436-55941455 MsG0880045217.01.T01:CDS 40.0%
AATTCCATCTCCAAAGAGTC+CGG - Chr8:55941057-55941076 None:intergenic 40.0%
AGAAAAGACGGAAGTGAATC+TGG - Chr8:55941012-55941031 None:intergenic 40.0%
AGTTCACATCAATGCCAACA+TGG - Chr8:55941241-55941260 None:intergenic 40.0%
ATTCCTTTGGTGGAAATCCT+TGG + Chr8:55941201-55941220 MsG0880045217.01.T01:CDS 40.0%
ATTCTCAGCTAAACCAAGGA+AGG - Chr8:55940808-55940827 None:intergenic 40.0%
CATTCACAAAATTGCCTCCA+GGG - Chr8:55941382-55941401 None:intergenic 40.0%
GAAAAGGATTTGAGTGTCTG+AGG - Chr8:55940772-55940791 None:intergenic 40.0%
GAAACCATTTGCAACACTTC+CGG - Chr8:55941297-55941316 None:intergenic 40.0%
GCCGTTGAATTTGATTCCTT+TGG + Chr8:55941188-55941207 MsG0880045217.01.T01:CDS 40.0%
GTTCACATCAATGCCAACAT+GGG - Chr8:55941240-55941259 None:intergenic 40.0%
TAAGGACTGTGTTACCTGAA+TGG + Chr8:55941435-55941454 MsG0880045217.01.T01:CDS 40.0%
TTCACATCAATGCCAACATG+GGG - Chr8:55941239-55941258 None:intergenic 40.0%
TTCCTTTGGTGGAAATCCTT+GGG + Chr8:55941202-55941221 MsG0880045217.01.T01:CDS 40.0%
! TTTCCACCGCTCGAATTTTT+CGG - Chr8:55941113-55941132 None:intergenic 40.0%
!! AAAACCGGAAGTGTTGCAAA+TGG + Chr8:55941290-55941309 MsG0880045217.01.T01:CDS 40.0%
!! TGGGTTAGAATTGGGTTTTC+TGG + Chr8:55941455-55941474 MsG0880045217.01.T01:CDS 40.0%
!! TTGAGTGTCTGAGGTATTGA+TGG - Chr8:55940763-55940782 None:intergenic 40.0%
AGTGAATCTGGCAAGGTCAT+CGG - Chr8:55941000-55941019 None:intergenic 45.0%
AGTGTTGTGGTAAGATACCC+TGG + Chr8:55941362-55941381 MsG0880045217.01.T01:CDS 45.0%
ATCCCAAGGATTTCCACCAA+AGG - Chr8:55941207-55941226 None:intergenic 45.0%
ATTCCATCTCCAAAGAGTCC+GGG - Chr8:55941056-55941075 None:intergenic 45.0%
CACATCCCGAAAAATTCGAG+CGG + Chr8:55941104-55941123 MsG0880045217.01.T01:CDS 45.0%
CCATTCACAAAATTGCCTCC+AGG - Chr8:55941383-55941402 None:intergenic 45.0%
TCTTTCGTAGTTGCACCTAC+CGG + Chr8:55941029-55941048 MsG0880045217.01.T01:CDS 45.0%
TTCGGGATGTGGGAATTGAA+TGG - Chr8:55941095-55941114 None:intergenic 45.0%
TTGGGACGACATTTGTGAGA+TGG - Chr8:55940923-55940942 None:intergenic 45.0%
TTTCCGCGTTGAATAGTCCA+AGG - Chr8:55941136-55941155 None:intergenic 45.0%
! CCTGGAGGCAATTTTGTGAA+TGG + Chr8:55941380-55941399 MsG0880045217.01.T01:CDS 45.0%
! GATAGACCCGTCTGAAATGA+AGG - Chr8:55940901-55940920 None:intergenic 45.0%
! GTTGCCTTCGAGTTCAATGT+TGG - Chr8:55940877-55940896 None:intergenic 45.0%
! TTCCACCGCTCGAATTTTTC+GGG - Chr8:55941112-55941131 None:intergenic 45.0%
!! ATTGGGTTTTCTGGTGCAAC+TGG + Chr8:55941464-55941483 MsG0880045217.01.T01:CDS 45.0%
!!! GCTCGAATTTTTCGGGATGT+GGG - Chr8:55941105-55941124 None:intergenic 45.0%
AATGTCGTCCCAAACAGCGT+TGG + Chr8:55940930-55940949 MsG0880045217.01.T01:CDS 50.0%
AATTCGAGCGGTGGAAACCT+TGG + Chr8:55941116-55941135 MsG0880045217.01.T01:CDS 50.0%
ACAACAGCGCCATGGAAAAC+CGG + Chr8:55941275-55941294 MsG0880045217.01.T01:CDS 50.0%
AGACGGAAGTGAATCTGGCA+AGG - Chr8:55941007-55941026 None:intergenic 50.0%
AGGCTCTACCAACGCTGTTT+GGG - Chr8:55940941-55940960 None:intergenic 50.0%
ATCCCGAAAAATTCGAGCGG+TGG + Chr8:55941107-55941126 MsG0880045217.01.T01:CDS 50.0%
ATGCCAACATGGGGATACAC+TGG - Chr8:55941230-55941249 None:intergenic 50.0%
GATCCAGTGTATCCCCATGT+TGG + Chr8:55941224-55941243 MsG0880045217.01.T01:CDS 50.0%
GCAACGCCTTCATTTCAGAC+GGG + Chr8:55940892-55940911 MsG0880045217.01.T01:CDS 50.0%
GGCAACGCCTTCATTTCAGA+CGG + Chr8:55940891-55940910 MsG0880045217.01.T01:CDS 50.0%
GTTGTGGTAAGATACCCTGG+AGG + Chr8:55941365-55941384 MsG0880045217.01.T01:CDS 50.0%
TTCCATCTCCAAAGAGTCCG+GGG - Chr8:55941055-55941074 None:intergenic 50.0%
! GCAACACTTCCGGTTTTCCA+TGG - Chr8:55941287-55941306 None:intergenic 50.0%
!!! CGCTCGAATTTTTCGGGATG+TGG - Chr8:55941106-55941125 None:intergenic 50.0%
CTTCGGTAACAACAGCGCCA+TGG + Chr8:55941267-55941286 MsG0880045217.01.T01:CDS 55.0%
GAGGCTCTACCAACGCTGTT+TGG - Chr8:55940942-55940961 None:intergenic 55.0%
TGGGGATACACTGGATCCCA+AGG - Chr8:55941221-55941240 None:intergenic 55.0%
!! ACAGCGTTGGTAGAGCCTCT+TGG + Chr8:55940943-55940962 MsG0880045217.01.T01:CDS 55.0%
!! AGCGTTGGTAGAGCCTCTTG+GGG + Chr8:55940945-55940964 MsG0880045217.01.T01:CDS 55.0%
!! CAGCGTTGGTAGAGCCTCTT+GGG + Chr8:55940944-55940963 MsG0880045217.01.T01:CDS 55.0%
ATCTCCAAAGAGTCCGGGGC+CGG - Chr8:55941051-55941070 None:intergenic 60.0%
GGGTGGACCAGTGCGTCTTT+GGG + Chr8:55940965-55940984 MsG0880045217.01.T01:CDS 60.0%
TGTGCGTCCCAAAGACGCAC+TGG - Chr8:55940975-55940994 None:intergenic 60.0%
! GTTGGTAGAGCCTCTTGGGG+TGG + Chr8:55940948-55940967 MsG0880045217.01.T01:CDS 60.0%
GGGGTGGACCAGTGCGTCTT+TGG + Chr8:55940964-55940983 MsG0880045217.01.T01:CDS 65.0%
GTAGTTGCACCTACCGGCCC+CGG + Chr8:55941035-55941054 MsG0880045217.01.T01:CDS 65.0%
! ACGCACTGGTCCACCCCAAG+AGG - Chr8:55940961-55940980 None:intergenic 65.0%
! GGCCCCGGACTCTTTGGAGA+TGG + Chr8:55941050-55941069 MsG0880045217.01.T01:CDS 65.0%
CCAAAGAGTCCGGGGCCGGT+AGG - Chr8:55941047-55941066 None:intergenic 70.0%
CCTACCGGCCCCGGACTCTT+TGG + Chr8:55941044-55941063 MsG0880045217.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr8 gene 55940756 55941544 55940756 ID=MsG0880045217.01;Name=MsG0880045217.01
Chr8 mRNA 55940756 55941544 55940756 ID=MsG0880045217.01.T01;Parent=MsG0880045217.01;Name=MsG0880045217.01.T01;_AED=0.44;_eAED=0.44;_QI=0|-1|0|1|-1|1|1|0|262
Chr8 exon 55940756 55941544 55940756 ID=MsG0880045217.01.T01:exon:24095;Parent=MsG0880045217.01.T01
Chr8 CDS 55940756 55941544 55940756 ID=MsG0880045217.01.T01:cds;Parent=MsG0880045217.01.T01
Gene Sequence

>MsG0880045217.01.T01

ATGGCCATCAATACCTCAGACACTCAAATCCTTTTCATTACCATCATTTCCTTCCTTGGTTTAGCTGAGAATGTATACTCAGCTGCATTCACAGTCTCAAATTTTGACTCATACAAAACCAACATTGAACTCGAAGGCAACGCCTTCATTTCAGACGGGTCTATCCATCTCACAAATGTCGTCCCAAACAGCGTTGGTAGAGCCTCTTGGGGTGGACCAGTGCGTCTTTGGGACGCACATACCGATGACCTTGCCAGATTCACTTCCGTCTTTTCTTTCGTAGTTGCACCTACCGGCCCCGGACTCTTTGGAGATGGAATTACCTTCTTCATTGCACCATTCAATTCCCACATCCCGAAAAATTCGAGCGGTGGAAACCTTGGACTATTCAACGCGGAAACTGCTTTGAATACGTACCAAAATCAAATTGTTGCCGTTGAATTTGATTCCTTTGGTGGAAATCCTTGGGATCCAGTGTATCCCCATGTTGGCATTGATGTGAACTCTATTGCTTCGGTAACAACAGCGCCATGGAAAACCGGAAGTGTTGCAAATGGTTTCACCGCAATTGCTTTTGTGAATTATGAGCCTGTGGAGAAAAATTTAAGTGTTGTGGTAAGATACCCTGGAGGCAATTTTGTGAATGGAACTTCAAACAGTGTCTCCTTTATTATTGATTTAAGGACTGTGTTACCTGAATGGGTTAGAATTGGGTTTTCTGGTGCAACTGGACAATTAGTTGAATTGCACAAGATTCTTTCTTGGACTTTTAAGTCAAGCTTCCAGTAA
Protein sequence

>MsG0880045217.01.T01

MAINTSDTQILFITIISFLGLAENVYSAAFTVSNFDSYKTNIELEGNAFISDGSIHLTNVVPNSVGRASWGGPVRLWDAHTDDLARFTSVFSFVVAPTGPGLFGDGITFFIAPFNSHIPKNSSGGNLGLFNAETALNTYQNQIVAVEFDSFGGNPWDPVYPHVGIDVNSIASVTTAPWKTGSVANGFTAIAFVNYEPVEKNLSVVVRYPGGNFVNGTSNSVSFIIDLRTVLPEWVRIGFSGATGQLVELHKILSWTFKSSFQ*