Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045217.01.T01 | XP_003628871.1 | 94.656 | 262 | 14 | 0 | 1 | 262 | 1 | 262 | 3.96E-174 | 490 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045217.01.T01 | G7LII0 | 90.602 | 266 | 21 | 1 | 1 | 262 | 1 | 266 | 2.60E-169 | 471 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045217.01.T01 | G7LII1 | 94.656 | 262 | 14 | 0 | 1 | 262 | 1 | 262 | 1.89e-174 | 490 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045217.01.T01 | MTR_8g068040 | 94.656 | 262 | 14 | 0 | 1 | 262 | 1 | 262 | 4.80e-178 | 490 |
| MsG0880045217.01.T01 | MTR_8g068030 | 90.602 | 266 | 21 | 1 | 1 | 262 | 1 | 266 | 2.53e-170 | 471 |
| MsG0880045217.01.T01 | MTR_5g031120 | 47.541 | 244 | 113 | 4 | 29 | 261 | 40 | 279 | 1.75e-66 | 208 |
| MsG0880045217.01.T01 | MTR_5g031100 | 47.131 | 244 | 113 | 4 | 29 | 261 | 40 | 278 | 2.68e-66 | 207 |
| MsG0880045217.01.T01 | MTR_8g068050 | 46.124 | 258 | 131 | 4 | 10 | 262 | 20 | 274 | 3.83e-64 | 212 |
| MsG0880045217.01.T01 | MTR_5g031140 | 45.714 | 245 | 119 | 4 | 27 | 261 | 46 | 286 | 4.56e-64 | 202 |
| MsG0880045217.01.T01 | MTR_8g067980 | 51.230 | 244 | 102 | 9 | 26 | 260 | 23 | 258 | 3.69e-62 | 196 |
| MsG0880045217.01.T01 | MTR_5g031160 | 43.673 | 245 | 124 | 4 | 27 | 261 | 47 | 287 | 9.66e-62 | 196 |
| MsG0880045217.01.T01 | MTR_8g067990 | 52.500 | 240 | 97 | 8 | 29 | 259 | 26 | 257 | 3.82e-61 | 194 |
| MsG0880045217.01.T01 | MTR_5g031030 | 45.455 | 242 | 122 | 4 | 27 | 261 | 36 | 274 | 4.17e-58 | 186 |
| MsG0880045217.01.T01 | MTR_5g031090 | 44.309 | 246 | 123 | 5 | 27 | 261 | 33 | 275 | 6.69e-58 | 186 |
| MsG0880045217.01.T01 | MTR_8g067960 | 47.034 | 236 | 106 | 8 | 35 | 261 | 16 | 241 | 1.93e-53 | 173 |
| MsG0880045217.01.T01 | MTR_8g023510 | 38.723 | 235 | 132 | 6 | 29 | 261 | 35 | 259 | 1.50e-45 | 154 |
| MsG0880045217.01.T01 | MTR_4g093080 | 39.300 | 257 | 146 | 6 | 11 | 262 | 9 | 260 | 3.64e-44 | 159 |
| MsG0880045217.01.T01 | MTR_8g067735 | 41.079 | 241 | 131 | 7 | 27 | 261 | 43 | 278 | 1.32e-43 | 157 |
| MsG0880045217.01.T01 | MTR_4g023810 | 36.596 | 235 | 129 | 7 | 29 | 259 | 34 | 252 | 7.85e-43 | 147 |
| MsG0880045217.01.T01 | MTR_8g067690 | 38.819 | 237 | 141 | 3 | 27 | 261 | 60 | 294 | 1.49e-42 | 154 |
| MsG0880045217.01.T01 | MTR_8g067930 | 38.889 | 252 | 145 | 6 | 16 | 262 | 13 | 260 | 2.30e-42 | 153 |
| MsG0880045217.01.T01 | MTR_8g067720 | 38.075 | 239 | 141 | 5 | 27 | 262 | 24 | 258 | 3.96e-42 | 152 |
| MsG0880045217.01.T01 | MTR_0163s0020 | 36.538 | 260 | 145 | 7 | 10 | 262 | 15 | 261 | 7.93e-42 | 144 |
| MsG0880045217.01.T01 | MTR_0684s0020 | 36.538 | 260 | 145 | 7 | 10 | 262 | 14 | 260 | 9.07e-42 | 144 |
| MsG0880045217.01.T01 | MTR_8g067940 | 40.370 | 270 | 131 | 11 | 13 | 261 | 21 | 281 | 1.28e-41 | 144 |
| MsG0880045217.01.T01 | MTR_3g047140 | 37.786 | 262 | 141 | 8 | 10 | 262 | 14 | 262 | 1.76e-41 | 144 |
| MsG0880045217.01.T01 | MTR_1g014240 | 39.506 | 243 | 137 | 6 | 27 | 262 | 37 | 276 | 1.68e-40 | 148 |
| MsG0880045217.01.T01 | MTR_1g090973 | 36.742 | 264 | 140 | 10 | 10 | 262 | 14 | 261 | 2.61e-40 | 140 |
| MsG0880045217.01.T01 | MTR_3g054170 | 36.709 | 237 | 135 | 7 | 27 | 261 | 31 | 254 | 1.24e-39 | 138 |
| MsG0880045217.01.T01 | MTR_3g054180 | 35.366 | 246 | 140 | 8 | 21 | 261 | 29 | 260 | 4.47e-38 | 134 |
| MsG0880045217.01.T01 | MTR_3g054200 | 35.659 | 258 | 146 | 9 | 11 | 261 | 10 | 254 | 7.81e-36 | 128 |
| MsG0880045217.01.T01 | MTR_8g067630 | 38.117 | 223 | 123 | 5 | 27 | 242 | 30 | 244 | 2.17e-35 | 133 |
| MsG0880045217.01.T01 | MTR_7g115740 | 36.975 | 238 | 136 | 7 | 34 | 262 | 29 | 261 | 3.76e-34 | 130 |
| MsG0880045217.01.T01 | MTR_7g116130 | 38.793 | 232 | 122 | 8 | 41 | 261 | 39 | 261 | 5.33e-33 | 127 |
| MsG0880045217.01.T01 | MTR_4g093110 | 34.252 | 254 | 155 | 7 | 13 | 261 | 18 | 264 | 9.16e-33 | 126 |
| MsG0880045217.01.T01 | MTR_4g093140 | 33.465 | 254 | 157 | 7 | 13 | 261 | 18 | 264 | 5.17e-32 | 124 |
| MsG0880045217.01.T01 | MTR_4g093070 | 34.599 | 237 | 145 | 5 | 30 | 261 | 35 | 266 | 6.40e-31 | 121 |
| MsG0880045217.01.T01 | MTR_4g093040 | 36.992 | 246 | 142 | 7 | 13 | 250 | 19 | 259 | 4.62e-30 | 118 |
| MsG0880045217.01.T01 | MTR_3g027280 | 36.293 | 259 | 133 | 11 | 18 | 260 | 23 | 265 | 6.39e-30 | 114 |
| MsG0880045217.01.T01 | MTR_1g090943 | 32.601 | 273 | 155 | 12 | 1 | 259 | 1 | 258 | 6.74e-30 | 113 |
| MsG0880045217.01.T01 | MTR_3g463370 | 32.319 | 263 | 118 | 7 | 10 | 261 | 9 | 222 | 3.06e-28 | 108 |
| MsG0880045217.01.T01 | MTR_4g093040 | 40.556 | 180 | 101 | 5 | 74 | 250 | 1 | 177 | 4.39e-27 | 110 |
| MsG0880045217.01.T01 | MTR_1g090930 | 34.221 | 263 | 142 | 10 | 12 | 260 | 17 | 262 | 1.31e-26 | 105 |
| MsG0880045217.01.T01 | MTR_1g090960 | 32.824 | 262 | 117 | 10 | 10 | 259 | 14 | 228 | 2.06e-26 | 103 |
| MsG0880045217.01.T01 | MTR_1g090957 | 35.271 | 258 | 125 | 11 | 18 | 260 | 23 | 253 | 9.44e-26 | 102 |
| MsG0880045217.01.T01 | MTR_1g090937 | 35.019 | 257 | 132 | 12 | 18 | 260 | 23 | 258 | 1.08e-25 | 102 |
| MsG0880045217.01.T01 | MTR_4g093050 | 35.526 | 228 | 132 | 9 | 43 | 260 | 43 | 265 | 2.16e-24 | 102 |
| MsG0880045217.01.T01 | MTR_7g063030 | 31.641 | 256 | 148 | 9 | 23 | 258 | 7 | 255 | 1.49e-21 | 94.0 |
| MsG0880045217.01.T01 | MTR_8g068050 | 39.370 | 127 | 72 | 1 | 10 | 131 | 20 | 146 | 2.28e-21 | 93.6 |
| MsG0880045217.01.T01 | MTR_5g025020 | 35.577 | 208 | 120 | 9 | 58 | 255 | 78 | 281 | 3.66e-21 | 92.8 |
| MsG0880045217.01.T01 | MTR_7g063030 | 32.627 | 236 | 139 | 8 | 36 | 258 | 33 | 261 | 2.05e-20 | 90.9 |
| MsG0880045217.01.T01 | MTR_7g062940 | 28.099 | 242 | 157 | 7 | 28 | 258 | 21 | 256 | 1.63e-19 | 88.2 |
| MsG0880045217.01.T01 | MTR_7g062700 | 29.268 | 246 | 150 | 8 | 29 | 258 | 22 | 259 | 7.39e-19 | 86.3 |
| MsG0880045217.01.T01 | MTR_7g115740 | 36.424 | 151 | 82 | 6 | 34 | 172 | 29 | 177 | 2.03e-17 | 82.0 |
| MsG0880045217.01.T01 | MTR_5g035910 | 30.038 | 263 | 160 | 9 | 10 | 258 | 12 | 264 | 1.37e-16 | 79.7 |
| MsG0880045217.01.T01 | MTR_7g062890 | 26.996 | 263 | 172 | 8 | 11 | 262 | 8 | 261 | 2.28e-16 | 79.0 |
| MsG0880045217.01.T01 | MTR_7g062770 | 27.391 | 230 | 153 | 6 | 40 | 257 | 33 | 260 | 3.99e-16 | 78.2 |
| MsG0880045217.01.T01 | MTR_0015s0030 | 32.178 | 202 | 122 | 8 | 61 | 257 | 60 | 251 | 5.38e-16 | 77.8 |
| MsG0880045217.01.T01 | MTR_7g062680 | 28.226 | 248 | 159 | 8 | 29 | 262 | 22 | 264 | 8.39e-16 | 77.0 |
| MsG0880045217.01.T01 | MTR_2g090410 | 30.081 | 246 | 140 | 11 | 34 | 260 | 28 | 260 | 1.09e-15 | 77.0 |
| MsG0880045217.01.T01 | MTR_2g090410 | 29.572 | 257 | 159 | 10 | 15 | 260 | 719 | 964 | 1.22e-13 | 70.9 |
| MsG0880045217.01.T01 | MTR_7g063010 | 30.000 | 230 | 144 | 8 | 40 | 258 | 34 | 257 | 1.61e-15 | 76.3 |
| MsG0880045217.01.T01 | MTR_5g068770 | 28.826 | 281 | 164 | 12 | 11 | 262 | 7 | 280 | 1.71e-15 | 76.3 |
| MsG0880045217.01.T01 | MTR_2g013720 | 28.464 | 267 | 159 | 8 | 10 | 257 | 9 | 262 | 2.61e-15 | 75.9 |
| MsG0880045217.01.T01 | MTR_5g077100 | 29.279 | 222 | 137 | 7 | 46 | 261 | 45 | 252 | 8.94e-15 | 74.3 |
| MsG0880045217.01.T01 | MTR_7g062950 | 27.347 | 245 | 161 | 7 | 29 | 262 | 22 | 260 | 2.18e-14 | 73.2 |
| MsG0880045217.01.T01 | MTR_1g052275 | 28.512 | 242 | 157 | 8 | 29 | 258 | 22 | 259 | 5.79e-14 | 71.6 |
| MsG0880045217.01.T01 | MTR_7g062990 | 26.923 | 260 | 168 | 8 | 11 | 258 | 11 | 260 | 1.38e-13 | 70.5 |
| MsG0880045217.01.T01 | MTR_3g068025 | 27.239 | 268 | 170 | 8 | 11 | 258 | 6 | 268 | 1.77e-13 | 70.5 |
| MsG0880045217.01.T01 | MTR_7g062750 | 25.620 | 242 | 164 | 7 | 28 | 257 | 21 | 258 | 2.06e-13 | 70.1 |
| MsG0880045217.01.T01 | MTR_7g062920 | 27.200 | 250 | 158 | 8 | 29 | 262 | 22 | 263 | 1.07e-12 | 68.2 |
| MsG0880045217.01.T01 | MTR_7g062660 | 29.719 | 249 | 150 | 9 | 29 | 262 | 22 | 260 | 1.39e-12 | 67.8 |
| MsG0880045217.01.T01 | MTR_7g062900 | 24.464 | 233 | 161 | 6 | 38 | 262 | 31 | 256 | 1.90e-12 | 67.4 |
| MsG0880045217.01.T01 | MTR_7g062850 | 31.250 | 160 | 95 | 5 | 116 | 262 | 72 | 229 | 8.41e-12 | 64.7 |
| MsG0880045217.01.T01 | MTR_1g048360 | 28.700 | 223 | 140 | 7 | 43 | 259 | 51 | 260 | 1.77e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045217.01.T01 | AT5G10530 | 36.923 | 260 | 145 | 8 | 13 | 262 | 5 | 255 | 8.68e-33 | 126 |
| MsG0880045217.01.T01 | AT5G65600 | 36.232 | 207 | 122 | 6 | 51 | 251 | 61 | 263 | 1.09e-23 | 100 |
| MsG0880045217.01.T01 | AT5G06740 | 32.787 | 244 | 131 | 11 | 34 | 258 | 40 | 269 | 2.05e-20 | 90.9 |
| MsG0880045217.01.T01 | AT5G06740 | 32.787 | 244 | 131 | 11 | 34 | 258 | 28 | 257 | 2.11e-20 | 90.9 |
| MsG0880045217.01.T01 | AT4G04960 | 32.068 | 237 | 144 | 6 | 30 | 255 | 23 | 253 | 2.05e-19 | 87.8 |
| MsG0880045217.01.T01 | AT4G04960 | 32.068 | 237 | 144 | 6 | 30 | 255 | 23 | 253 | 2.90e-19 | 87.4 |
| MsG0880045217.01.T01 | AT5G55830 | 29.434 | 265 | 167 | 12 | 10 | 260 | 9 | 267 | 4.10e-19 | 87.0 |
| MsG0880045217.01.T01 | AT4G02410 | 31.405 | 242 | 151 | 8 | 27 | 257 | 26 | 263 | 4.83e-19 | 86.7 |
| MsG0880045217.01.T01 | AT4G29050 | 32.420 | 219 | 133 | 7 | 51 | 258 | 45 | 259 | 1.36e-18 | 85.5 |
| MsG0880045217.01.T01 | AT4G29050 | 32.420 | 219 | 133 | 7 | 51 | 258 | 59 | 273 | 1.44e-18 | 85.5 |
| MsG0880045217.01.T01 | AT2G37710 | 29.437 | 231 | 144 | 6 | 40 | 257 | 37 | 261 | 3.74e-18 | 84.3 |
| MsG0880045217.01.T01 | AT4G02420 | 31.092 | 238 | 149 | 7 | 30 | 257 | 28 | 260 | 5.67e-17 | 80.9 |
| MsG0880045217.01.T01 | AT5G59260 | 28.980 | 245 | 152 | 7 | 35 | 259 | 33 | 275 | 3.01e-15 | 75.5 |
| MsG0880045217.01.T01 | AT5G03140 | 31.674 | 221 | 126 | 9 | 46 | 255 | 51 | 257 | 5.27e-15 | 75.1 |
| MsG0880045217.01.T01 | AT5G59270 | 29.675 | 246 | 145 | 9 | 36 | 259 | 37 | 276 | 1.51e-14 | 73.6 |
| MsG0880045217.01.T01 | AT2G29250 | 28.829 | 222 | 130 | 8 | 53 | 257 | 51 | 261 | 2.53e-14 | 72.8 |
| MsG0880045217.01.T01 | AT3G55550 | 28.049 | 246 | 152 | 8 | 30 | 260 | 26 | 261 | 5.69e-14 | 72.0 |
| MsG0880045217.01.T01 | AT1G70110 | 28.448 | 232 | 145 | 7 | 41 | 258 | 33 | 257 | 3.85e-13 | 69.3 |
| MsG0880045217.01.T01 | AT5G01540 | 26.908 | 249 | 160 | 9 | 30 | 259 | 33 | 278 | 1.62e-12 | 67.4 |
| MsG0880045217.01.T01 | AT2G29220 | 27.027 | 222 | 134 | 8 | 53 | 257 | 51 | 261 | 1.73e-12 | 67.4 |
| MsG0880045217.01.T01 | AT5G60320 | 27.881 | 269 | 162 | 13 | 10 | 260 | 11 | 265 | 8.44e-12 | 65.5 |
| MsG0880045217.01.T01 | AT4G28350 | 31.950 | 241 | 144 | 10 | 23 | 253 | 25 | 255 | 1.56e-11 | 64.7 |
| MsG0880045217.01.T01 | AT5G01550 | 27.953 | 254 | 152 | 10 | 30 | 259 | 44 | 290 | 1.80e-11 | 64.3 |
| MsG0880045217.01.T01 | AT3G53380 | 30.631 | 222 | 139 | 7 | 40 | 255 | 32 | 244 | 2.56e-11 | 63.9 |
| MsG0880045217.01.T01 | AT5G59270 | 32.065 | 184 | 106 | 7 | 36 | 206 | 37 | 214 | 2.81e-11 | 63.9 |
| MsG0880045217.01.T01 | AT5G59270 | 32.065 | 184 | 106 | 7 | 36 | 206 | 34 | 211 | 3.05e-11 | 63.5 |
| MsG0880045217.01.T01 | AT5G60270 | 27.711 | 249 | 148 | 12 | 30 | 261 | 26 | 259 | 5.77e-11 | 62.8 |
Find 74 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCCTTTATTATTGATTTA+AGG | 0.103961 | 8:+55941417 | MsG0880045217.01.T01:CDS |
| CAACGGCAACAATTTGATTT+TGG | 0.154322 | 8:-55941172 | None:intergenic |
| AATTGCACAAGATTCTTTCT+TGG | 0.235858 | 8:+55941498 | MsG0880045217.01.T01:CDS |
| GGGGTGGACCAGTGCGTCTT+TGG | 0.236394 | 8:+55940964 | MsG0880045217.01.T01:CDS |
| ATTACCATCATTTCCTTCCT+TGG | 0.320400 | 8:+55940792 | MsG0880045217.01.T01:CDS |
| CAGCGTTGGTAGAGCCTCTT+GGG | 0.325739 | 8:+55940944 | MsG0880045217.01.T01:CDS |
| GAGGCTCTACCAACGCTGTT+TGG | 0.341000 | 8:-55940939 | None:intergenic |
| AACCCAATTCTAACCCATTC+AGG | 0.343697 | 8:-55941449 | None:intergenic |
| AGGCTCTACCAACGCTGTTT+GGG | 0.356529 | 8:-55940938 | None:intergenic |
| ATTCCTTTGGTGGAAATCCT+TGG | 0.362413 | 8:+55941201 | MsG0880045217.01.T01:CDS |
| CCTACCGGCCCCGGACTCTT+TGG | 0.365553 | 8:+55941044 | MsG0880045217.01.T01:CDS |
| GAAACCATTTGCAACACTTC+CGG | 0.368968 | 8:-55941294 | None:intergenic |
| GGGTGGACCAGTGCGTCTTT+GGG | 0.369247 | 8:+55940965 | MsG0880045217.01.T01:CDS |
| TTCCTTTGGTGGAAATCCTT+GGG | 0.370789 | 8:+55941202 | MsG0880045217.01.T01:CDS |
| GCCGTTGAATTTGATTCCTT+TGG | 0.377073 | 8:+55941188 | MsG0880045217.01.T01:CDS |
| AGAAAAGACGGAAGTGAATC+TGG | 0.380784 | 8:-55941009 | None:intergenic |
| AGTCCTTAAATCAATAATAA+AGG | 0.389349 | 8:-55941420 | None:intergenic |
| AAGGACTGTGTTACCTGAAT+GGG | 0.409423 | 8:+55941436 | MsG0880045217.01.T01:CDS |
| TTACCTGAATGGGTTAGAAT+TGG | 0.411013 | 8:+55941446 | MsG0880045217.01.T01:CDS |
| TACCTGAATGGGTTAGAATT+GGG | 0.436070 | 8:+55941447 | MsG0880045217.01.T01:CDS |
| TTGAGTGTCTGAGGTATTGA+TGG | 0.437585 | 8:-55940760 | None:intergenic |
| TAAGGACTGTGTTACCTGAA+TGG | 0.438449 | 8:+55941435 | MsG0880045217.01.T01:CDS |
| AATTCCATCTCCAAAGAGTC+CGG | 0.470374 | 8:-55941054 | None:intergenic |
| AGGAAATGATGGTAATGAAA+AGG | 0.470493 | 8:-55940785 | None:intergenic |
| ACAACAGCGCCATGGAAAAC+CGG | 0.474841 | 8:+55941275 | MsG0880045217.01.T01:CDS |
| GTTGAATTTGATTCCTTTGG+TGG | 0.478637 | 8:+55941191 | MsG0880045217.01.T01:CDS |
| TGATGTGAACTCTATTGCTT+CGG | 0.487011 | 8:+55941250 | MsG0880045217.01.T01:CDS |
| AATTCGAGCGGTGGAAACCT+TGG | 0.488077 | 8:+55941116 | MsG0880045217.01.T01:CDS |
| ACAGCGTTGGTAGAGCCTCT+TGG | 0.492372 | 8:+55940943 | MsG0880045217.01.T01:CDS |
| CCATTCACAAAATTGCCTCC+AGG | 0.500015 | 8:-55941380 | None:intergenic |
| TCTTTCGTAGTTGCACCTAC+CGG | 0.501597 | 8:+55941029 | MsG0880045217.01.T01:CDS |
| GATAGACCCGTCTGAAATGA+AGG | 0.505115 | 8:-55940898 | None:intergenic |
| TTCGGGATGTGGGAATTGAA+TGG | 0.528951 | 8:-55941092 | None:intergenic |
| ATCTCCAAAGAGTCCGGGGC+CGG | 0.531082 | 8:-55941048 | None:intergenic |
| AGTGTTGTGGTAAGATACCC+TGG | 0.531216 | 8:+55941362 | MsG0880045217.01.T01:CDS |
| ATTCCATCTCCAAAGAGTCC+GGG | 0.532131 | 8:-55941053 | None:intergenic |
| AAAACCGGAAGTGTTGCAAA+TGG | 0.533724 | 8:+55941290 | MsG0880045217.01.T01:CDS |
| CATTCACAAAATTGCCTCCA+GGG | 0.540005 | 8:-55941379 | None:intergenic |
| TAAACCAAGGAAGGAAATGA+TGG | 0.543373 | 8:-55940796 | None:intergenic |
| GTTGCCTTCGAGTTCAATGT+TGG | 0.546598 | 8:-55940874 | None:intergenic |
| ATTGAATGGTGCAATGAAGA+AGG | 0.550942 | 8:-55941078 | None:intergenic |
| GGCCCCGGACTCTTTGGAGA+TGG | 0.559930 | 8:+55941050 | MsG0880045217.01.T01:CDS |
| CCAAAGAGTCCGGGGCCGGT+AGG | 0.566532 | 8:-55941044 | None:intergenic |
| GTCTGAGGTATTGATGGCCA+TGG | 0.569008 | 8:-55940754 | None:intergenic |
| GTAGTTGCACCTACCGGCCC+CGG | 0.572250 | 8:+55941035 | MsG0880045217.01.T01:CDS |
| AGTGAATCTGGCAAGGTCAT+CGG | 0.575771 | 8:-55940997 | None:intergenic |
| ATTCTCAGCTAAACCAAGGA+AGG | 0.576732 | 8:-55940805 | None:intergenic |
| GAAAAGGATTTGAGTGTCTG+AGG | 0.578585 | 8:-55940769 | None:intergenic |
| TTGGGACGACATTTGTGAGA+TGG | 0.580022 | 8:-55940920 | None:intergenic |
| ATGCCAACATGGGGATACAC+TGG | 0.582679 | 8:-55941227 | None:intergenic |
| TTTCCGCGTTGAATAGTCCA+AGG | 0.585701 | 8:-55941133 | None:intergenic |
| TGTGCGTCCCAAAGACGCAC+TGG | 0.587932 | 8:-55940972 | None:intergenic |
| TGGGGATACACTGGATCCCA+AGG | 0.588792 | 8:-55941218 | None:intergenic |
| AGTTCACATCAATGCCAACA+TGG | 0.590000 | 8:-55941238 | None:intergenic |
| GGCAACGCCTTCATTTCAGA+CGG | 0.592247 | 8:+55940891 | MsG0880045217.01.T01:CDS |
| GCAACGCCTTCATTTCAGAC+GGG | 0.592414 | 8:+55940892 | MsG0880045217.01.T01:CDS |
| GATCCAGTGTATCCCCATGT+TGG | 0.593245 | 8:+55941224 | MsG0880045217.01.T01:CDS |
| ACCAAAGGAATCAAATTCAA+CGG | 0.597273 | 8:-55941189 | None:intergenic |
| GTTCACATCAATGCCAACAT+GGG | 0.598694 | 8:-55941237 | None:intergenic |
| CTTCGGTAACAACAGCGCCA+TGG | 0.600721 | 8:+55941267 | MsG0880045217.01.T01:CDS |
| TGCAACTACGAAAGAAAAGA+CGG | 0.621796 | 8:-55941021 | None:intergenic |
| GTTGGTAGAGCCTCTTGGGG+TGG | 0.626236 | 8:+55940948 | MsG0880045217.01.T01:CDS |
| AGACGGAAGTGAATCTGGCA+AGG | 0.630149 | 8:-55941004 | None:intergenic |
| ATAATTCACAAAAGCAATTG+CGG | 0.630774 | 8:-55941318 | None:intergenic |
| AAAACCAACATTGAACTCGA+AGG | 0.636807 | 8:+55940870 | MsG0880045217.01.T01:CDS |
| ATCCCAAGGATTTCCACCAA+AGG | 0.638655 | 8:-55941204 | None:intergenic |
| TTCCATCTCCAAAGAGTCCG+GGG | 0.642837 | 8:-55941052 | None:intergenic |
| ACGCACTGGTCCACCCCAAG+AGG | 0.647273 | 8:-55940958 | None:intergenic |
| AATGTCGTCCCAAACAGCGT+TGG | 0.653029 | 8:+55940930 | MsG0880045217.01.T01:CDS |
| TTCACATCAATGCCAACATG+GGG | 0.673996 | 8:-55941236 | None:intergenic |
| ATACATTCTCAGCTAAACCA+AGG | 0.674272 | 8:-55940809 | None:intergenic |
| AGCGTTGGTAGAGCCTCTTG+GGG | 0.742698 | 8:+55940945 | MsG0880045217.01.T01:CDS |
| AAACCTTGGACTATTCAACG+CGG | 0.808136 | 8:+55941130 | MsG0880045217.01.T01:CDS |
| GTTGTGGTAAGATACCCTGG+AGG | 0.825858 | 8:+55941365 | MsG0880045217.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTCCTTAAATCAATAATAA+AGG | - | Chr8:55941423-55941442 | None:intergenic | 20.0% |
| !!! | TCTCCTTTATTATTGATTTA+AGG | + | Chr8:55941417-55941436 | MsG0880045217.01.T01:CDS | 20.0% |
| ! | ATAATTCACAAAAGCAATTG+CGG | - | Chr8:55941321-55941340 | None:intergenic | 25.0% |
| AATTGCACAAGATTCTTTCT+TGG | + | Chr8:55941498-55941517 | MsG0880045217.01.T01:CDS | 30.0% | |
| ACCAAAGGAATCAAATTCAA+CGG | - | Chr8:55941192-55941211 | None:intergenic | 30.0% | |
| ! | ACACTTAAATTTTTCTCCAC+AGG | - | Chr8:55941347-55941366 | None:intergenic | 30.0% |
| ! | AGGAAATGATGGTAATGAAA+AGG | - | Chr8:55940788-55940807 | None:intergenic | 30.0% |
| ! | GGAGAAAAATTTAAGTGTTG+TGG | + | Chr8:55941349-55941368 | MsG0880045217.01.T01:CDS | 30.0% |
| AAAACCAACATTGAACTCGA+AGG | + | Chr8:55940870-55940889 | MsG0880045217.01.T01:CDS | 35.0% | |
| ATACATTCTCAGCTAAACCA+AGG | - | Chr8:55940812-55940831 | None:intergenic | 35.0% | |
| ATTACCATCATTTCCTTCCT+TGG | + | Chr8:55940792-55940811 | MsG0880045217.01.T01:CDS | 35.0% | |
| ATTGAATGGTGCAATGAAGA+AGG | - | Chr8:55941081-55941100 | None:intergenic | 35.0% | |
| GTTGAATTTGATTCCTTTGG+TGG | + | Chr8:55941191-55941210 | MsG0880045217.01.T01:CDS | 35.0% | |
| TAAACCAAGGAAGGAAATGA+TGG | - | Chr8:55940799-55940818 | None:intergenic | 35.0% | |
| TGATGTGAACTCTATTGCTT+CGG | + | Chr8:55941250-55941269 | MsG0880045217.01.T01:CDS | 35.0% | |
| TGCAACTACGAAAGAAAAGA+CGG | - | Chr8:55941024-55941043 | None:intergenic | 35.0% | |
| ! | TTTTGTGAATTATGAGCCTG+TGG | + | Chr8:55941328-55941347 | MsG0880045217.01.T01:CDS | 35.0% |
| !! | CAACGGCAACAATTTGATTT+TGG | - | Chr8:55941175-55941194 | None:intergenic | 35.0% |
| !! | TACCTGAATGGGTTAGAATT+GGG | + | Chr8:55941447-55941466 | MsG0880045217.01.T01:CDS | 35.0% |
| !! | TTACCTGAATGGGTTAGAAT+TGG | + | Chr8:55941446-55941465 | MsG0880045217.01.T01:CDS | 35.0% |
| AAACCTTGGACTATTCAACG+CGG | + | Chr8:55941130-55941149 | MsG0880045217.01.T01:CDS | 40.0% | |
| AACCCAATTCTAACCCATTC+AGG | - | Chr8:55941452-55941471 | None:intergenic | 40.0% | |
| AAGGACTGTGTTACCTGAAT+GGG | + | Chr8:55941436-55941455 | MsG0880045217.01.T01:CDS | 40.0% | |
| AATTCCATCTCCAAAGAGTC+CGG | - | Chr8:55941057-55941076 | None:intergenic | 40.0% | |
| AGAAAAGACGGAAGTGAATC+TGG | - | Chr8:55941012-55941031 | None:intergenic | 40.0% | |
| AGTTCACATCAATGCCAACA+TGG | - | Chr8:55941241-55941260 | None:intergenic | 40.0% | |
| ATTCCTTTGGTGGAAATCCT+TGG | + | Chr8:55941201-55941220 | MsG0880045217.01.T01:CDS | 40.0% | |
| ATTCTCAGCTAAACCAAGGA+AGG | - | Chr8:55940808-55940827 | None:intergenic | 40.0% | |
| CATTCACAAAATTGCCTCCA+GGG | - | Chr8:55941382-55941401 | None:intergenic | 40.0% | |
| GAAAAGGATTTGAGTGTCTG+AGG | - | Chr8:55940772-55940791 | None:intergenic | 40.0% | |
| GAAACCATTTGCAACACTTC+CGG | - | Chr8:55941297-55941316 | None:intergenic | 40.0% | |
| GCCGTTGAATTTGATTCCTT+TGG | + | Chr8:55941188-55941207 | MsG0880045217.01.T01:CDS | 40.0% | |
| GTTCACATCAATGCCAACAT+GGG | - | Chr8:55941240-55941259 | None:intergenic | 40.0% | |
| TAAGGACTGTGTTACCTGAA+TGG | + | Chr8:55941435-55941454 | MsG0880045217.01.T01:CDS | 40.0% | |
| TTCACATCAATGCCAACATG+GGG | - | Chr8:55941239-55941258 | None:intergenic | 40.0% | |
| TTCCTTTGGTGGAAATCCTT+GGG | + | Chr8:55941202-55941221 | MsG0880045217.01.T01:CDS | 40.0% | |
| ! | TTTCCACCGCTCGAATTTTT+CGG | - | Chr8:55941113-55941132 | None:intergenic | 40.0% |
| !! | AAAACCGGAAGTGTTGCAAA+TGG | + | Chr8:55941290-55941309 | MsG0880045217.01.T01:CDS | 40.0% |
| !! | TGGGTTAGAATTGGGTTTTC+TGG | + | Chr8:55941455-55941474 | MsG0880045217.01.T01:CDS | 40.0% |
| !! | TTGAGTGTCTGAGGTATTGA+TGG | - | Chr8:55940763-55940782 | None:intergenic | 40.0% |
| AGTGAATCTGGCAAGGTCAT+CGG | - | Chr8:55941000-55941019 | None:intergenic | 45.0% | |
| AGTGTTGTGGTAAGATACCC+TGG | + | Chr8:55941362-55941381 | MsG0880045217.01.T01:CDS | 45.0% | |
| ATCCCAAGGATTTCCACCAA+AGG | - | Chr8:55941207-55941226 | None:intergenic | 45.0% | |
| ATTCCATCTCCAAAGAGTCC+GGG | - | Chr8:55941056-55941075 | None:intergenic | 45.0% | |
| CACATCCCGAAAAATTCGAG+CGG | + | Chr8:55941104-55941123 | MsG0880045217.01.T01:CDS | 45.0% | |
| CCATTCACAAAATTGCCTCC+AGG | - | Chr8:55941383-55941402 | None:intergenic | 45.0% | |
| TCTTTCGTAGTTGCACCTAC+CGG | + | Chr8:55941029-55941048 | MsG0880045217.01.T01:CDS | 45.0% | |
| TTCGGGATGTGGGAATTGAA+TGG | - | Chr8:55941095-55941114 | None:intergenic | 45.0% | |
| TTGGGACGACATTTGTGAGA+TGG | - | Chr8:55940923-55940942 | None:intergenic | 45.0% | |
| TTTCCGCGTTGAATAGTCCA+AGG | - | Chr8:55941136-55941155 | None:intergenic | 45.0% | |
| ! | CCTGGAGGCAATTTTGTGAA+TGG | + | Chr8:55941380-55941399 | MsG0880045217.01.T01:CDS | 45.0% |
| ! | GATAGACCCGTCTGAAATGA+AGG | - | Chr8:55940901-55940920 | None:intergenic | 45.0% |
| ! | GTTGCCTTCGAGTTCAATGT+TGG | - | Chr8:55940877-55940896 | None:intergenic | 45.0% |
| ! | TTCCACCGCTCGAATTTTTC+GGG | - | Chr8:55941112-55941131 | None:intergenic | 45.0% |
| !! | ATTGGGTTTTCTGGTGCAAC+TGG | + | Chr8:55941464-55941483 | MsG0880045217.01.T01:CDS | 45.0% |
| !!! | GCTCGAATTTTTCGGGATGT+GGG | - | Chr8:55941105-55941124 | None:intergenic | 45.0% |
| AATGTCGTCCCAAACAGCGT+TGG | + | Chr8:55940930-55940949 | MsG0880045217.01.T01:CDS | 50.0% | |
| AATTCGAGCGGTGGAAACCT+TGG | + | Chr8:55941116-55941135 | MsG0880045217.01.T01:CDS | 50.0% | |
| ACAACAGCGCCATGGAAAAC+CGG | + | Chr8:55941275-55941294 | MsG0880045217.01.T01:CDS | 50.0% | |
| AGACGGAAGTGAATCTGGCA+AGG | - | Chr8:55941007-55941026 | None:intergenic | 50.0% | |
| AGGCTCTACCAACGCTGTTT+GGG | - | Chr8:55940941-55940960 | None:intergenic | 50.0% | |
| ATCCCGAAAAATTCGAGCGG+TGG | + | Chr8:55941107-55941126 | MsG0880045217.01.T01:CDS | 50.0% | |
| ATGCCAACATGGGGATACAC+TGG | - | Chr8:55941230-55941249 | None:intergenic | 50.0% | |
| GATCCAGTGTATCCCCATGT+TGG | + | Chr8:55941224-55941243 | MsG0880045217.01.T01:CDS | 50.0% | |
| GCAACGCCTTCATTTCAGAC+GGG | + | Chr8:55940892-55940911 | MsG0880045217.01.T01:CDS | 50.0% | |
| GGCAACGCCTTCATTTCAGA+CGG | + | Chr8:55940891-55940910 | MsG0880045217.01.T01:CDS | 50.0% | |
| GTTGTGGTAAGATACCCTGG+AGG | + | Chr8:55941365-55941384 | MsG0880045217.01.T01:CDS | 50.0% | |
| TTCCATCTCCAAAGAGTCCG+GGG | - | Chr8:55941055-55941074 | None:intergenic | 50.0% | |
| ! | GCAACACTTCCGGTTTTCCA+TGG | - | Chr8:55941287-55941306 | None:intergenic | 50.0% |
| !!! | CGCTCGAATTTTTCGGGATG+TGG | - | Chr8:55941106-55941125 | None:intergenic | 50.0% |
| CTTCGGTAACAACAGCGCCA+TGG | + | Chr8:55941267-55941286 | MsG0880045217.01.T01:CDS | 55.0% | |
| GAGGCTCTACCAACGCTGTT+TGG | - | Chr8:55940942-55940961 | None:intergenic | 55.0% | |
| TGGGGATACACTGGATCCCA+AGG | - | Chr8:55941221-55941240 | None:intergenic | 55.0% | |
| !! | ACAGCGTTGGTAGAGCCTCT+TGG | + | Chr8:55940943-55940962 | MsG0880045217.01.T01:CDS | 55.0% |
| !! | AGCGTTGGTAGAGCCTCTTG+GGG | + | Chr8:55940945-55940964 | MsG0880045217.01.T01:CDS | 55.0% |
| !! | CAGCGTTGGTAGAGCCTCTT+GGG | + | Chr8:55940944-55940963 | MsG0880045217.01.T01:CDS | 55.0% |
| ATCTCCAAAGAGTCCGGGGC+CGG | - | Chr8:55941051-55941070 | None:intergenic | 60.0% | |
| GGGTGGACCAGTGCGTCTTT+GGG | + | Chr8:55940965-55940984 | MsG0880045217.01.T01:CDS | 60.0% | |
| TGTGCGTCCCAAAGACGCAC+TGG | - | Chr8:55940975-55940994 | None:intergenic | 60.0% | |
| ! | GTTGGTAGAGCCTCTTGGGG+TGG | + | Chr8:55940948-55940967 | MsG0880045217.01.T01:CDS | 60.0% |
| GGGGTGGACCAGTGCGTCTT+TGG | + | Chr8:55940964-55940983 | MsG0880045217.01.T01:CDS | 65.0% | |
| GTAGTTGCACCTACCGGCCC+CGG | + | Chr8:55941035-55941054 | MsG0880045217.01.T01:CDS | 65.0% | |
| ! | ACGCACTGGTCCACCCCAAG+AGG | - | Chr8:55940961-55940980 | None:intergenic | 65.0% |
| ! | GGCCCCGGACTCTTTGGAGA+TGG | + | Chr8:55941050-55941069 | MsG0880045217.01.T01:CDS | 65.0% |
| CCAAAGAGTCCGGGGCCGGT+AGG | - | Chr8:55941047-55941066 | None:intergenic | 70.0% | |
| CCTACCGGCCCCGGACTCTT+TGG | + | Chr8:55941044-55941063 | MsG0880045217.01.T01:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 55940756 | 55941544 | 55940756 | ID=MsG0880045217.01;Name=MsG0880045217.01 |
| Chr8 | mRNA | 55940756 | 55941544 | 55940756 | ID=MsG0880045217.01.T01;Parent=MsG0880045217.01;Name=MsG0880045217.01.T01;_AED=0.44;_eAED=0.44;_QI=0|-1|0|1|-1|1|1|0|262 |
| Chr8 | exon | 55940756 | 55941544 | 55940756 | ID=MsG0880045217.01.T01:exon:24095;Parent=MsG0880045217.01.T01 |
| Chr8 | CDS | 55940756 | 55941544 | 55940756 | ID=MsG0880045217.01.T01:cds;Parent=MsG0880045217.01.T01 |
| Gene Sequence |
| Protein sequence |