Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025591.01.T01 | XP_003612968.2 | 95.374 | 281 | 11 | 2 | 1 | 281 | 1 | 279 | 0 | 533 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025591.01.T01 | Q2PP74 | 95.374 | 281 | 11 | 2 | 1 | 281 | 1 | 279 | 0 | 533 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025591.01.T01 | MTR_5g031120 | 95.018 | 281 | 12 | 2 | 1 | 281 | 1 | 279 | 0.0 | 532 |
| MsG0580025591.01.T01 | MTR_5g031100 | 87.900 | 281 | 31 | 3 | 1 | 281 | 1 | 278 | 3.60e-175 | 484 |
| MsG0580025591.01.T01 | MTR_5g031140 | 78.853 | 279 | 54 | 4 | 3 | 281 | 13 | 286 | 2.62e-158 | 442 |
| MsG0580025591.01.T01 | MTR_5g031160 | 70.714 | 280 | 79 | 3 | 2 | 281 | 11 | 287 | 8.27e-135 | 382 |
| MsG0580025591.01.T01 | MTR_5g031090 | 51.429 | 245 | 115 | 4 | 39 | 281 | 33 | 275 | 1.24e-77 | 237 |
| MsG0580025591.01.T01 | MTR_5g031030 | 51.020 | 245 | 112 | 5 | 39 | 281 | 36 | 274 | 3.72e-75 | 231 |
| MsG0580025591.01.T01 | MTR_8g068040 | 43.253 | 289 | 128 | 7 | 1 | 281 | 1 | 261 | 2.60e-65 | 205 |
| MsG0580025591.01.T01 | MTR_8g068030 | 41.980 | 293 | 130 | 7 | 1 | 281 | 1 | 265 | 4.21e-62 | 197 |
| MsG0580025591.01.T01 | MTR_8g068050 | 45.935 | 246 | 121 | 7 | 39 | 281 | 37 | 273 | 4.35e-59 | 199 |
| MsG0580025591.01.T01 | MTR_8g067940 | 46.087 | 230 | 112 | 7 | 59 | 281 | 57 | 281 | 6.54e-59 | 189 |
| MsG0580025591.01.T01 | MTR_8g067980 | 46.581 | 234 | 110 | 9 | 50 | 280 | 37 | 258 | 5.23e-55 | 179 |
| MsG0580025591.01.T01 | MTR_8g067990 | 45.923 | 233 | 109 | 9 | 51 | 279 | 38 | 257 | 2.87e-52 | 172 |
| MsG0580025591.01.T01 | MTR_8g023510 | 37.860 | 243 | 131 | 7 | 41 | 281 | 35 | 259 | 1.62e-43 | 149 |
| MsG0580025591.01.T01 | MTR_0163s0020 | 40.574 | 244 | 123 | 10 | 40 | 281 | 37 | 260 | 5.40e-41 | 143 |
| MsG0580025591.01.T01 | MTR_0684s0020 | 40.574 | 244 | 123 | 10 | 40 | 281 | 36 | 259 | 6.11e-41 | 143 |
| MsG0580025591.01.T01 | MTR_4g093080 | 36.290 | 248 | 141 | 6 | 37 | 281 | 26 | 259 | 6.32e-40 | 147 |
| MsG0580025591.01.T01 | MTR_8g067690 | 35.366 | 246 | 147 | 5 | 38 | 281 | 59 | 294 | 2.05e-39 | 145 |
| MsG0580025591.01.T01 | MTR_4g023810 | 39.095 | 243 | 124 | 9 | 41 | 281 | 34 | 254 | 2.40e-39 | 138 |
| MsG0580025591.01.T01 | MTR_8g067960 | 39.076 | 238 | 123 | 9 | 50 | 281 | 20 | 241 | 5.22e-39 | 137 |
| MsG0580025591.01.T01 | MTR_4g093140 | 35.211 | 284 | 143 | 11 | 6 | 281 | 14 | 264 | 7.25e-39 | 145 |
| MsG0580025591.01.T01 | MTR_4g093110 | 35.211 | 284 | 143 | 11 | 6 | 281 | 14 | 264 | 1.76e-38 | 143 |
| MsG0580025591.01.T01 | MTR_8g067735 | 35.341 | 249 | 146 | 7 | 37 | 281 | 41 | 278 | 3.35e-38 | 142 |
| MsG0580025591.01.T01 | MTR_8g067630 | 36.797 | 231 | 131 | 8 | 38 | 265 | 29 | 247 | 1.87e-37 | 139 |
| MsG0580025591.01.T01 | MTR_3g054170 | 38.776 | 245 | 127 | 9 | 39 | 281 | 31 | 254 | 1.44e-36 | 131 |
| MsG0580025591.01.T01 | MTR_7g115740 | 37.349 | 249 | 135 | 9 | 40 | 281 | 26 | 260 | 2.28e-36 | 137 |
| MsG0580025591.01.T01 | MTR_8g067930 | 35.223 | 247 | 145 | 7 | 39 | 281 | 24 | 259 | 9.73e-36 | 135 |
| MsG0580025591.01.T01 | MTR_3g054200 | 36.735 | 245 | 132 | 8 | 39 | 281 | 31 | 254 | 1.76e-35 | 128 |
| MsG0580025591.01.T01 | MTR_8g067720 | 33.603 | 247 | 149 | 6 | 38 | 281 | 23 | 257 | 3.08e-35 | 134 |
| MsG0580025591.01.T01 | MTR_4g093040 | 39.749 | 239 | 131 | 9 | 36 | 270 | 30 | 259 | 4.28e-34 | 130 |
| MsG0580025591.01.T01 | MTR_3g047140 | 38.462 | 247 | 128 | 9 | 39 | 281 | 35 | 261 | 1.10e-33 | 124 |
| MsG0580025591.01.T01 | MTR_1g014240 | 34.510 | 255 | 141 | 7 | 38 | 281 | 36 | 275 | 1.15e-33 | 129 |
| MsG0580025591.01.T01 | MTR_1g090973 | 36.268 | 284 | 143 | 14 | 3 | 281 | 10 | 260 | 2.71e-33 | 123 |
| MsG0580025591.01.T01 | MTR_7g116130 | 34.629 | 283 | 150 | 13 | 6 | 281 | 7 | 261 | 1.28e-32 | 126 |
| MsG0580025591.01.T01 | MTR_4g093070 | 37.229 | 231 | 122 | 8 | 58 | 281 | 52 | 266 | 1.87e-32 | 126 |
| MsG0580025591.01.T01 | MTR_3g054180 | 38.057 | 247 | 128 | 10 | 39 | 281 | 35 | 260 | 8.48e-32 | 119 |
| MsG0580025591.01.T01 | MTR_3g027280 | 39.200 | 250 | 123 | 14 | 40 | 280 | 36 | 265 | 2.84e-30 | 115 |
| MsG0580025591.01.T01 | MTR_1g090943 | 35.628 | 247 | 136 | 10 | 38 | 281 | 34 | 260 | 6.38e-29 | 111 |
| MsG0580025591.01.T01 | MTR_4g093040 | 42.857 | 182 | 95 | 7 | 93 | 270 | 1 | 177 | 1.46e-28 | 114 |
| MsG0580025591.01.T01 | MTR_3g463370 | 33.216 | 283 | 116 | 9 | 5 | 281 | 7 | 222 | 2.20e-28 | 109 |
| MsG0580025591.01.T01 | MTR_1g090930 | 34.672 | 274 | 142 | 12 | 12 | 280 | 21 | 262 | 2.01e-26 | 105 |
| MsG0580025591.01.T01 | MTR_4g093050 | 33.333 | 246 | 146 | 11 | 40 | 277 | 27 | 262 | 1.92e-25 | 105 |
| MsG0580025591.01.T01 | MTR_1g090937 | 33.195 | 241 | 137 | 11 | 40 | 277 | 36 | 255 | 6.94e-25 | 100 |
| MsG0580025591.01.T01 | MTR_1g090957 | 35.743 | 249 | 121 | 14 | 40 | 280 | 36 | 253 | 6.28e-23 | 95.5 |
| MsG0580025591.01.T01 | MTR_1g090960 | 32.069 | 290 | 117 | 13 | 3 | 281 | 10 | 230 | 3.11e-22 | 92.8 |
| MsG0580025591.01.T01 | MTR_8g068050 | 45.045 | 111 | 59 | 2 | 39 | 149 | 37 | 145 | 8.98e-21 | 92.0 |
| MsG0580025591.01.T01 | MTR_7g115740 | 38.298 | 141 | 76 | 6 | 40 | 177 | 26 | 158 | 5.05e-19 | 87.0 |
| MsG0580025591.01.T01 | MTR_5g025020 | 30.717 | 293 | 164 | 13 | 1 | 277 | 14 | 283 | 1.21e-18 | 86.3 |
| MsG0580025591.01.T01 | MTR_7g062940 | 28.571 | 245 | 146 | 9 | 48 | 278 | 27 | 256 | 6.09e-15 | 75.1 |
| MsG0580025591.01.T01 | MTR_5g068770 | 28.745 | 247 | 156 | 9 | 42 | 277 | 38 | 275 | 9.10e-14 | 71.6 |
| MsG0580025591.01.T01 | MTR_1g099260 | 27.778 | 234 | 148 | 7 | 53 | 278 | 28 | 248 | 1.09e-12 | 68.2 |
| MsG0580025591.01.T01 | MTR_2g013720 | 29.730 | 259 | 148 | 10 | 38 | 280 | 25 | 265 | 1.70e-12 | 67.8 |
| MsG0580025591.01.T01 | MTR_3g068025 | 28.794 | 257 | 136 | 8 | 47 | 278 | 34 | 268 | 3.05e-12 | 67.0 |
| MsG0580025591.01.T01 | MTR_7g063030 | 28.870 | 239 | 142 | 9 | 53 | 278 | 32 | 255 | 3.44e-12 | 67.0 |
| MsG0580025591.01.T01 | MTR_7g063030 | 28.870 | 239 | 142 | 9 | 53 | 278 | 38 | 261 | 3.72e-12 | 66.6 |
| MsG0580025591.01.T01 | MTR_1g052275 | 29.880 | 251 | 136 | 10 | 50 | 279 | 29 | 260 | 3.78e-12 | 66.6 |
| MsG0580025591.01.T01 | MTR_7g063010 | 26.718 | 262 | 156 | 9 | 34 | 278 | 15 | 257 | 2.35e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580025591.01.T01 | AT5G10530 | 34.538 | 249 | 146 | 9 | 38 | 281 | 18 | 254 | 1.32e-30 | 120 |
| MsG0580025591.01.T01 | AT5G65600 | 34.728 | 239 | 138 | 9 | 39 | 270 | 35 | 262 | 1.57e-27 | 112 |
| MsG0580025591.01.T01 | AT5G55830 | 33.219 | 292 | 158 | 14 | 1 | 280 | 1 | 267 | 3.63e-17 | 81.6 |
| MsG0580025591.01.T01 | AT3G53810 | 31.621 | 253 | 144 | 11 | 40 | 278 | 25 | 262 | 1.33e-16 | 80.1 |
| MsG0580025591.01.T01 | AT4G29050 | 30.263 | 228 | 134 | 9 | 63 | 278 | 59 | 273 | 2.13e-15 | 76.6 |
| MsG0580025591.01.T01 | AT4G29050 | 30.263 | 228 | 134 | 9 | 63 | 278 | 45 | 259 | 2.21e-15 | 76.6 |
| MsG0580025591.01.T01 | AT2G37710 | 30.417 | 240 | 136 | 10 | 53 | 277 | 38 | 261 | 8.62e-15 | 74.7 |
| MsG0580025591.01.T01 | AT3G55550 | 28.458 | 253 | 144 | 7 | 42 | 277 | 26 | 258 | 2.43e-14 | 73.6 |
| MsG0580025591.01.T01 | AT4G02410 | 28.846 | 260 | 160 | 9 | 30 | 277 | 17 | 263 | 5.73e-14 | 72.4 |
| MsG0580025591.01.T01 | AT5G06740 | 25.610 | 246 | 169 | 8 | 38 | 279 | 23 | 258 | 2.05e-13 | 70.5 |
| MsG0580025591.01.T01 | AT5G06740 | 25.610 | 246 | 169 | 8 | 38 | 279 | 35 | 270 | 2.08e-13 | 70.5 |
| MsG0580025591.01.T01 | AT4G04960 | 29.435 | 248 | 152 | 9 | 38 | 275 | 19 | 253 | 2.21e-13 | 70.5 |
| MsG0580025591.01.T01 | AT4G04960 | 29.435 | 248 | 152 | 9 | 38 | 275 | 19 | 253 | 2.92e-13 | 70.1 |
| MsG0580025591.01.T01 | AT4G02420 | 28.897 | 263 | 134 | 8 | 40 | 277 | 26 | 260 | 3.26e-13 | 70.1 |
| MsG0580025591.01.T01 | AT3G08870 | 28.679 | 265 | 154 | 11 | 37 | 280 | 52 | 302 | 3.15e-12 | 67.0 |
| MsG0580025591.01.T01 | AT3G08870 | 28.788 | 264 | 153 | 11 | 38 | 280 | 32 | 281 | 3.17e-12 | 67.0 |
Find 51 sgRNAs with CRISPR-Local
Find 72 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACGGATTTACTTTCTTTCT+TGG | 0.269151 | 5:+20966149 | MsG0580025591.01.T01:CDS |
| ATCTCACACCGATTCACATT+TGG | 0.297102 | 5:+20966045 | MsG0580025591.01.T01:CDS |
| AAGAGTTGCTAGTTATTATA+AGG | 0.297777 | 5:-20966618 | None:intergenic |
| CTCTGCTGCTACTGGAGAAT+TGG | 0.304375 | 5:+20966556 | MsG0580025591.01.T01:CDS |
| GATGGAATAAGTGCAGTTTC+CGG | 0.313494 | 5:-20966230 | None:intergenic |
| CTAGCTTCTCCTAAAGCATT+TGG | 0.341845 | 5:-20966401 | None:intergenic |
| AAACACATGATATCATTAAT+TGG | 0.346222 | 5:+20966582 | MsG0580025591.01.T01:CDS |
| TCTCACACCGATTCACATTT+GGG | 0.363163 | 5:+20966046 | MsG0580025591.01.T01:CDS |
| TAAAAGATTAAGTGTGTTTG+TGG | 0.366091 | 5:+20966445 | MsG0580025591.01.T01:CDS |
| GTTGGTTTCTCTGCTGCTAC+TGG | 0.366563 | 5:+20966548 | MsG0580025591.01.T01:CDS |
| ATGGAATAAGTGCAGTTTCC+GGG | 0.366773 | 5:-20966229 | None:intergenic |
| TTTGTGCAACCAAATGCTTT+AGG | 0.368217 | 5:+20966392 | MsG0580025591.01.T01:CDS |
| AAACCAACTCTAACCCATTC+AGG | 0.374633 | 5:-20966533 | None:intergenic |
| CACAGTTGCGCGCGAATCAA+TGG | 0.380869 | 5:-20966354 | None:intergenic |
| ACCGTTGGTGTTCACGATAA+AGG | 0.398057 | 5:-20966111 | None:intergenic |
| ATTCGCGCGCAACTGTGAAT+TGG | 0.418518 | 5:+20966360 | MsG0580025591.01.T01:CDS |
| AATTCAAGCGGAGGATATCT+TGG | 0.423242 | 5:+20966197 | MsG0580025591.01.T01:CDS |
| TAAGGAGTGTTCTACCTGAA+TGG | 0.453975 | 5:+20966519 | MsG0580025591.01.T01:CDS |
| GTGCAGTTTCCGGGTTGAAA+AGG | 0.457441 | 5:-20966220 | None:intergenic |
| CTACCTGAATGGGTTAGAGT+TGG | 0.465600 | 5:+20966530 | MsG0580025591.01.T01:CDS |
| AAGGAGTGTTCTACCTGAAT+GGG | 0.471833 | 5:+20966520 | MsG0580025591.01.T01:CDS |
| GGAGATGCCTCAATCTCTAA+TGG | 0.477534 | 5:+20965951 | MsG0580025591.01.T01:CDS |
| CCTCACATTGGAATTGATGT+TGG | 0.490680 | 5:+20966329 | MsG0580025591.01.T01:CDS |
| GTACTTCCTAGACTTGGCTG+TGG | 0.498461 | 5:-20965873 | None:intergenic |
| TCCGTGGAGTCTTGAACCGT+TGG | 0.503789 | 5:-20966126 | None:intergenic |
| AGTGTGTTTGTGGCTTATCC+TGG | 0.504941 | 5:+20966455 | MsG0580025591.01.T01:CDS |
| TGGATTACCGGAATATTTGT+CGG | 0.513008 | 5:-20965994 | None:intergenic |
| AACTCAATAGCTGCTACTAC+AGG | 0.515473 | 5:-20966260 | None:intergenic |
| TCCTTTATCGTGAACACCAA+CGG | 0.525186 | 5:+20966110 | MsG0580025591.01.T01:CDS |
| GAAATTGTACTTCCTAGACT+TGG | 0.532599 | 5:-20965879 | None:intergenic |
| GTTTCATCCCAAATGTGAAT+CGG | 0.543859 | 5:-20966053 | None:intergenic |
| GGATATTGAGATGGTGAAGC+TGG | 0.545088 | 5:-20966308 | None:intergenic |
| ATCTCCCTTGACAAATATGT+CGG | 0.546473 | 5:-20965934 | None:intergenic |
| TCAAAACCACAGCCAAGTCT+AGG | 0.550894 | 5:+20965867 | MsG0580025591.01.T01:CDS |
| TTTGGTAAGTCAAAATGAAG+TGG | 0.552598 | 5:-20966173 | None:intergenic |
| AAATCCCGACATATTTGTCA+AGG | 0.555952 | 5:+20965929 | MsG0580025591.01.T01:CDS |
| TCTCCCTTGACAAATATGTC+GGG | 0.556438 | 5:-20965933 | None:intergenic |
| GGTAGTGGTAAGAATGCTAC+TGG | 0.559048 | 5:+20966476 | MsG0580025591.01.T01:CDS |
| TTTGTGGCTTATCCTGGTAG+TGG | 0.559729 | 5:+20966461 | MsG0580025591.01.T01:CDS |
| AAGAACACCATTAGAGATTG+AGG | 0.561779 | 5:-20965958 | None:intergenic |
| GGTTCAAGACTCCACGGAGA+CGG | 0.577507 | 5:+20966131 | MsG0580025591.01.T01:CDS |
| CACATTTGGGATGAAACTAG+TGG | 0.586810 | 5:+20966059 | MsG0580025591.01.T01:CDS |
| CCATCTCAATATCCTCACAT+TGG | 0.593308 | 5:+20966317 | MsG0580025591.01.T01:CDS |
| CACGATAAAGGAGAAACTAG+TGG | 0.616598 | 5:-20966099 | None:intergenic |
| TTTGGTTGCACAAAATCAAG+AGG | 0.621172 | 5:-20966383 | None:intergenic |
| GTAGCATTCTTACCACTACC+AGG | 0.625989 | 5:-20966473 | None:intergenic |
| AATCCCGACATATTTGTCAA+GGG | 0.634189 | 5:+20965930 | MsG0580025591.01.T01:CDS |
| AGAAAGTAAATCCGTCTCCG+TGG | 0.655944 | 5:-20966142 | None:intergenic |
| ACCAACGGTTCAAGACTCCA+CGG | 0.663695 | 5:+20966125 | MsG0580025591.01.T01:CDS |
| CCAACATCAATTCCAATGTG+AGG | 0.664958 | 5:-20966329 | None:intergenic |
| CCAATGTGAGGATATTGAGA+TGG | 0.671042 | 5:-20966317 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACACATGATATCATTAAT+TGG | + | Chr5:20966582-20966601 | MsG0580025591.01.T01:CDS | 20.0% |
| !!! | AGTTTGATAGTTTTACAAAT+GGG | + | Chr5:20966279-20966298 | MsG0580025591.01.T01:CDS | 20.0% |
| ! | TAAAAGATTAAGTGTGTTTG+TGG | + | Chr5:20966445-20966464 | MsG0580025591.01.T01:CDS | 25.0% |
| !! | TTCTTCATCGAATTTTGTTA+TGG | - | Chr5:20965910-20965929 | None:intergenic | 25.0% |
| !!! | AATATTTGTCGGTTTTTGTT+AGG | - | Chr5:20965986-20966005 | None:intergenic | 25.0% |
| !!! | GAGTTTGATAGTTTTACAAA+TGG | + | Chr5:20966278-20966297 | MsG0580025591.01.T01:CDS | 25.0% |
| ACAAAAACCGACAAATATTC+CGG | + | Chr5:20965987-20966006 | MsG0580025591.01.T01:CDS | 30.0% | |
| GACTTACCAAAAAATTCAAG+CGG | + | Chr5:20966185-20966204 | MsG0580025591.01.T01:CDS | 30.0% | |
| TTTGGTAAGTCAAAATGAAG+TGG | - | Chr5:20966176-20966195 | None:intergenic | 30.0% | |
| !! | TGATAGTTTTACAAATGGGT+GGG | + | Chr5:20966283-20966302 | MsG0580025591.01.T01:CDS | 30.0% |
| !! | TTGATAGTTTTACAAATGGG+TGG | + | Chr5:20966282-20966301 | MsG0580025591.01.T01:CDS | 30.0% |
| !!! | GTGAATTGACATAGTTTTGT+AGG | - | Chr5:20965830-20965849 | None:intergenic | 30.0% |
| !!! | TCTCTTTTGTTGTTGATCTA+AGG | + | Chr5:20966501-20966520 | MsG0580025591.01.T01:CDS | 30.0% |
| AAATCCCGACATATTTGTCA+AGG | + | Chr5:20965929-20965948 | MsG0580025591.01.T01:CDS | 35.0% | |
| AAGAACACCATTAGAGATTG+AGG | - | Chr5:20965961-20965980 | None:intergenic | 35.0% | |
| AATCCCGACATATTTGTCAA+GGG | + | Chr5:20965930-20965949 | MsG0580025591.01.T01:CDS | 35.0% | |
| ATCTCCCTTGACAAATATGT+CGG | - | Chr5:20965937-20965956 | None:intergenic | 35.0% | |
| GAAATTGTACTTCCTAGACT+TGG | - | Chr5:20965882-20965901 | None:intergenic | 35.0% | |
| GTTTCATCCCAAATGTGAAT+CGG | - | Chr5:20966056-20966075 | None:intergenic | 35.0% | |
| TGGATTACCGGAATATTTGT+CGG | - | Chr5:20965997-20966016 | None:intergenic | 35.0% | |
| TTACCAAAAAATTCAAGCGG+AGG | + | Chr5:20966188-20966207 | MsG0580025591.01.T01:CDS | 35.0% | |
| TTTGGTTGCACAAAATCAAG+AGG | - | Chr5:20966386-20966405 | None:intergenic | 35.0% | |
| TTTGTGCAACCAAATGCTTT+AGG | + | Chr5:20966392-20966411 | MsG0580025591.01.T01:CDS | 35.0% | |
| ! | GACGGATTTACTTTCTTTCT+TGG | + | Chr5:20966149-20966168 | MsG0580025591.01.T01:CDS | 35.0% |
| !!! | TATCCTCCGCTTGAATTTTT+TGG | - | Chr5:20966194-20966213 | None:intergenic | 35.0% |
| !!! | TGACATAGTTTTGTAGGAAG+AGG | - | Chr5:20965824-20965843 | None:intergenic | 35.0% |
| AAACCAACTCTAACCCATTC+AGG | - | Chr5:20966536-20966555 | None:intergenic | 40.0% | |
| AACTCAATAGCTGCTACTAC+AGG | - | Chr5:20966263-20966282 | None:intergenic | 40.0% | |
| AATTCAAGCGGAGGATATCT+TGG | + | Chr5:20966197-20966216 | MsG0580025591.01.T01:CDS | 40.0% | |
| ATGGAATAAGTGCAGTTTCC+GGG | - | Chr5:20966232-20966251 | None:intergenic | 40.0% | |
| CACGATAAAGGAGAAACTAG+TGG | - | Chr5:20966102-20966121 | None:intergenic | 40.0% | |
| CCAACATCAATTCCAATGTG+AGG | - | Chr5:20966332-20966351 | None:intergenic | 40.0% | |
| CCAATGTGAGGATATTGAGA+TGG | - | Chr5:20966320-20966339 | None:intergenic | 40.0% | |
| CCATCTCAATATCCTCACAT+TGG | + | Chr5:20966317-20966336 | MsG0580025591.01.T01:CDS | 40.0% | |
| CCTCACATTGGAATTGATGT+TGG | + | Chr5:20966329-20966348 | MsG0580025591.01.T01:CDS | 40.0% | |
| GATGGAATAAGTGCAGTTTC+CGG | - | Chr5:20966233-20966252 | None:intergenic | 40.0% | |
| TCCTTTATCGTGAACACCAA+CGG | + | Chr5:20966110-20966129 | MsG0580025591.01.T01:CDS | 40.0% | |
| TCTCCCTTGACAAATATGTC+GGG | - | Chr5:20965936-20965955 | None:intergenic | 40.0% | |
| ! | AATCCACTCCAAAAAAGCGT+TGG | + | Chr5:20966011-20966030 | MsG0580025591.01.T01:CDS | 40.0% |
| ! | CACATTTGGGATGAAACTAG+TGG | + | Chr5:20966059-20966078 | MsG0580025591.01.T01:CDS | 40.0% |
| ! | CTAGCTTCTCCTAAAGCATT+TGG | - | Chr5:20966404-20966423 | None:intergenic | 40.0% |
| ! | GCTACTACAGGATTTTCAGA+TGG | - | Chr5:20966251-20966270 | None:intergenic | 40.0% |
| !! | AAGGAGTGTTCTACCTGAAT+GGG | + | Chr5:20966520-20966539 | MsG0580025591.01.T01:CDS | 40.0% |
| !! | ATATCTTGGCCTTTTCAACC+CGG | + | Chr5:20966211-20966230 | MsG0580025591.01.T01:CDS | 40.0% |
| !! | ATCTCACACCGATTCACATT+TGG | + | Chr5:20966045-20966064 | MsG0580025591.01.T01:CDS | 40.0% |
| !! | TAAGGAGTGTTCTACCTGAA+TGG | + | Chr5:20966519-20966538 | MsG0580025591.01.T01:CDS | 40.0% |
| !! | TCTCACACCGATTCACATTT+GGG | + | Chr5:20966046-20966065 | MsG0580025591.01.T01:CDS | 40.0% |
| !!! | GCTTTTTTGGAGTGGATTAC+CGG | - | Chr5:20966009-20966028 | None:intergenic | 40.0% |
| AGAAAGTAAATCCGTCTCCG+TGG | - | Chr5:20966145-20966164 | None:intergenic | 45.0% | |
| AGTGTGTTTGTGGCTTATCC+TGG | + | Chr5:20966455-20966474 | MsG0580025591.01.T01:CDS | 45.0% | |
| GGAGATGCCTCAATCTCTAA+TGG | + | Chr5:20965951-20965970 | MsG0580025591.01.T01:CDS | 45.0% | |
| GGATATTGAGATGGTGAAGC+TGG | - | Chr5:20966311-20966330 | None:intergenic | 45.0% | |
| GTAGCATTCTTACCACTACC+AGG | - | Chr5:20966476-20966495 | None:intergenic | 45.0% | |
| TCAAAACCACAGCCAAGTCT+AGG | + | Chr5:20965867-20965886 | MsG0580025591.01.T01:CDS | 45.0% | |
| TTTGTGGCTTATCCTGGTAG+TGG | + | Chr5:20966461-20966480 | MsG0580025591.01.T01:CDS | 45.0% | |
| ! | ACCGTTGGTGTTCACGATAA+AGG | - | Chr5:20966114-20966133 | None:intergenic | 45.0% |
| ! | GGTAGTGGTAAGAATGCTAC+TGG | + | Chr5:20966476-20966495 | MsG0580025591.01.T01:CDS | 45.0% |
| !! | CTACCTGAATGGGTTAGAGT+TGG | + | Chr5:20966530-20966549 | MsG0580025591.01.T01:CDS | 45.0% |
| !!! | AGACTTGGCTGTGGTTTTGA+TGG | - | Chr5:20965867-20965886 | None:intergenic | 45.0% |
| !!! | TGTGGTTTTGATGGTGTTGG+TGG | - | Chr5:20965858-20965877 | None:intergenic | 45.0% |
| ACCAACGGTTCAAGACTCCA+CGG | + | Chr5:20966125-20966144 | MsG0580025591.01.T01:CDS | 50.0% | |
| ATTCGCGCGCAACTGTGAAT+TGG | + | Chr5:20966360-20966379 | MsG0580025591.01.T01:CDS | 50.0% | |
| CTCTGCTGCTACTGGAGAAT+TGG | + | Chr5:20966556-20966575 | MsG0580025591.01.T01:CDS | 50.0% | |
| GTACTTCCTAGACTTGGCTG+TGG | - | Chr5:20965876-20965895 | None:intergenic | 50.0% | |
| ! | GTGCAGTTTCCGGGTTGAAA+AGG | - | Chr5:20966223-20966242 | None:intergenic | 50.0% |
| ! | GTTGGTTTCTCTGCTGCTAC+TGG | + | Chr5:20966548-20966567 | MsG0580025591.01.T01:CDS | 50.0% |
| !!! | CGTCCAACGCTTTTTTGGAG+TGG | - | Chr5:20966017-20966036 | None:intergenic | 50.0% |
| !!! | GGCTGTGGTTTTGATGGTGT+TGG | - | Chr5:20965861-20965880 | None:intergenic | 50.0% |
| !!! | TTGCGCGTCCAACGCTTTTT+TGG | - | Chr5:20966022-20966041 | None:intergenic | 50.0% |
| CACAGTTGCGCGCGAATCAA+TGG | - | Chr5:20966357-20966376 | None:intergenic | 55.0% | |
| GGTTCAAGACTCCACGGAGA+CGG | + | Chr5:20966131-20966150 | MsG0580025591.01.T01:CDS | 55.0% | |
| TCCGTGGAGTCTTGAACCGT+TGG | - | Chr5:20966129-20966148 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 20965780 | 20966625 | 20965780 | ID=MsG0580025591.01;Name=MsG0580025591.01 |
| Chr5 | mRNA | 20965780 | 20966625 | 20965780 | ID=MsG0580025591.01.T01;Parent=MsG0580025591.01;Name=MsG0580025591.01.T01;_AED=0.42;_eAED=0.42;_QI=0|-1|0|1|-1|1|1|0|281 |
| Chr5 | exon | 20965780 | 20966625 | 20965780 | ID=MsG0580025591.01.T01:exon:23439;Parent=MsG0580025591.01.T01 |
| Chr5 | CDS | 20965780 | 20966625 | 20965780 | ID=MsG0580025591.01.T01:cds;Parent=MsG0580025591.01.T01 |
| Gene Sequence |
| Protein sequence |
