AlfalfaGEDB | MsG0380014579.01

M. sativa cultivar ZhongmuNo.1 / MsG0380014579.01

KEGG: -
GO: -
PFAM: PF01594

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014579.01.T01	XP_039687193.1	97.268	549	15	0	1	549	86	634	0	1081

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014579.01.T01	A0A396IRW3	97.268	549	15	0	1	549	86	634	0.0	1081

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048058.01	MsG0380014579.01	0.801532	8.612261e-49	4.122698e-46
MsG0180003181.01	MsG0380014579.01	0.835807	1.353233e-56	1.673141e-53
MsG0180003303.01	MsG0380014579.01	0.820587	6.341010e-53	5.037633e-50
MsG0180004139.01	MsG0380014579.01	0.805034	1.622322e-49	8.494056e-47
MsG0180005451.01	MsG0380014579.01	0.807990	3.859351e-50	2.180784e-47
MsG0280006519.01	MsG0380014579.01	0.808118	3.623384e-50	2.054430e-47
MsG0280006728.01	MsG0380014579.01	0.822645	2.120625e-53	1.785589e-50
MsG0280007790.01	MsG0380014579.01	0.809085	2.252142e-50	1.309910e-47
MsG0280008614.01	MsG0380014579.01	0.801895	7.255821e-49	3.505579e-46
MsG0280010022.01	MsG0380014579.01	0.811168	8.012453e-51	4.924409e-48

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014579.01.T01	AT5G55960	72.810	548	148	1	2	549	77	623	0.0	840

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Find 93 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCTGAAAACCGCAAC+AGG	0.401224	3:-56700664	None:intergenic
AACAGACCATTGTTTCGTTT+TGG	0.246889	3:+56700596	MsG0380014579.01.T01:CDS
AACAGTCTCATAGAACTTAG+TGG	0.482735	3:-56701211	None:intergenic
AACAGTGTAGAGAATGAAAA+TGG	0.356033	3:-56700500	None:intergenic
AACATGACTGAAATTGTGAC+TGG	0.534198	3:+56701267	MsG0380014579.01.T01:CDS
AATCCACTACGTCTCCTACT+TGG	0.487388	3:-56700763	None:intergenic
AATTGGTGTTAAGAAGTGGA+TGG	0.563893	3:+56701152	MsG0380014579.01.T01:CDS
ACATGACTGAAATTGTGACT+GGG	0.689782	3:+56701268	MsG0380014579.01.T01:CDS
ACTCTAGTGGAGATTGAAAT+TGG	0.286523	3:-56701717	None:intergenic
ACTGGACTCAGCATCATTGG+GGG	0.699783	3:+56702062	MsG0380014579.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAGTGTAGAGAATGAAAA+TGG	-	Chr3:56700503-56700522	None:intergenic	30.0%
CTCAAACAATGGTGTTTATT+TGG	+	Chr3:56701631-56701650	MsG0380014579.01.T01:CDS	30.0%
TTCTCTTAAGTTACATGTTG+AGG	+	Chr3:56701110-56701129	MsG0380014579.01.T01:CDS	30.0%
TTGAAAAAATGCAATCTCAG+CGG	-	Chr3:56701793-56701812	None:intergenic	30.0%
AACAGTCTCATAGAACTTAG+TGG	-	Chr3:56701214-56701233	None:intergenic	35.0%
AACATGACTGAAATTGTGAC+TGG	+	Chr3:56701267-56701286	MsG0380014579.01.T01:CDS	35.0%
ACATGACTGAAATTGTGACT+GGG	+	Chr3:56701268-56701287	MsG0380014579.01.T01:CDS	35.0%
ACTCTAGTGGAGATTGAAAT+TGG	-	Chr3:56701720-56701739	None:intergenic	35.0%
AGAGACTATGGAATTAGCAA+TGG	-	Chr3:56701583-56701602	None:intergenic	35.0%
ATCAACACATCTAACTCTAG+TGG	-	Chr3:56701733-56701752	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	56700484	56702133	56700484	ID=MsG0380014579.01;Name=MsG0380014579.01
Chr3	mRNA	56700484	56702133	56700484	ID=MsG0380014579.01.T01;Parent=MsG0380014579.01;Name=MsG0380014579.01.T01;_AED=0.40;_eAED=0.40;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|549
Chr3	exon	56700484	56702133	56700484	ID=MsG0380014579.01.T01:exon:23888;Parent=MsG0380014579.01.T01
Chr3	CDS	56700484	56702133	56700484	ID=MsG0380014579.01.T01:cds;Parent=MsG0380014579.01.T01

Gene Sequence

>MsG0380014579.01.T01

ATGGGTCTTCTTTTCGCCATTTTCATTCTCTACACTGTTTCCAAGCTCTTGGAACAGTATCTAAGACCTCTTCAATGGGCTGTGCTTTGTTCGATTCCTCTTAGAGGAATTCAACAGACCATTGTTTCGTTTTGGGCTGAGCCTCTCACGTTGGGACTCACAGAAACTGTTCTTGCTGTTCCTGTTGCGGTTTTCAGGGTTTTTGTTGGGACTCTTGTTGAGATTAGAGAAACTTTGTTTAGACTCATTATGAGGAAACCAAAGCCTCCTAATCCTCATCCAAGTAGGAGACGTAGTGGATTTTCAAAGTTGCTTCGTTTGTTGGTTTCTTTTGGAATATTTATCATTGCTTATGAGAAGCTTGGTGGTTTTGGTGCTTCATCACTTTTAGGGTTAGGCTTTGTGTTTAGCTCTAAGAATGTGGATTCAACTATGCACACTTTGTCTTCTTTGAGGACGAATAGTTTCAGGAGAAGTGCAATTAGTGCTTTTTTTACAAGAAGGGTGGTGAGGAAGTTGAATACTATTGTTGCAATTGGGCTTATTGTTGTTATGATTGTAGGGTTTTTGACTGGGGTGATTTTCTTTTCTTATAAGATTGGTGTCGAAGGAAAAGATGCCGTTGTTTCTCTTAAGTTACATGTTGAGGAGAGTAATTATTCTGAGAGAATTGGTGTTAAGAAGTGGATGGAAGAGAATGATGTTGCTGGAATGGTTGATAGTTACACCACTAAGTTCTATGAGACTGTTTCTGAACAAATTGATGGGTTGGCTGTGCAATATAACATGACTGAAATTGTGACTGGGATTAAGCATTTTGTGACATCAACTCCTGCTAACTCTTCAACACCTTCAAGAGCTTTGGTCAAACCTTCACCATACACAGAAAAGTTTTTGAGTTTGAAAAGTCGGGTTAAGAACCGTGAATGGAGTCAAATTTACGAGGAACTTGATTTACTTTTTCGAGAGCTTGTGATCACGCGCGAAGATTTGGTTGAGAAGGCAAAAGGGTTTGCTTTTAAAGGCGTCGATGTAGCTCAACGTATTTTCGCTAGTAGTACAACCGTGCTTGGAAGCAGTACAAAATTTATGTTATCCATTGCTAATTCCATAGTCTCTGGTGCTGCAGAGGTTTTCAATTTTGTATCTCAAACAATGGTGTTTATTTGGGTTTTGTATATTCTCATTACATCAGAGTCTGGTGGAGTAACTGAACAAGTGATGCATATGCTTCCAATTTCAATCTCCACTAGAGTTAGATGTGTTGATGTTTTGGATAAAGCTATTTCAGGTGTTCTTTTGGCTACCGCTGAGATTGCATTTTTTCAAGGATGTCTTACTTGGCTTTTGTTTAGGTTATGCAAAATTCATTTCTTGTATATGTCAACTGTACTTGCATTCATTAGTCCTTTGCTGCCAATATTTCCATCTTGGCTTGCGACGATTCCGGCAGCTTTGCAACTAGTGATGGAAGGCAGATACATACTGGGCGTTTTCTTGGCTGTTACTCACCTTTTCCTTATGGATTATGGTGCGTCAGAAATTCTGGAAGATGTTCCTGGAAATAGTGCTTATCTTACTGGACTCAGCATCATTGGGGGAATGACATTGTTCCCATCAGCTCTTGAGGTAAAAATTTTAACTCCTTGA

Protein sequence

>MsG0380014579.01.T01

MGLLFAIFILYTVSKLLEQYLRPLQWAVLCSIPLRGIQQTIVSFWAEPLTLGLTETVLAVPVAVFRVFVGTLVEIRETLFRLIMRKPKPPNPHPSRRRSGFSKLLRLLVSFGIFIIAYEKLGGFGASSLLGLGFVFSSKNVDSTMHTLSSLRTNSFRRSAISAFFTRRVVRKLNTIVAIGLIVVMIVGFLTGVIFFSYKIGVEGKDAVVSLKLHVEESNYSERIGVKKWMEENDVAGMVDSYTTKFYETVSEQIDGLAVQYNMTEIVTGIKHFVTSTPANSSTPSRALVKPSPYTEKFLSLKSRVKNREWSQIYEELDLLFRELVITREDLVEKAKGFAFKGVDVAQRIFASSTTVLGSSTKFMLSIANSIVSGAAEVFNFVSQTMVFIWVLYILITSESGGVTEQVMHMLPISISTRVRCVDVLDKAISGVLLATAEIAFFQGCLTWLLFRLCKIHFLYMSTVLAFISPLLPIFPSWLATIPAALQLVMEGRYILGVFLAVTHLFLMDYGASEILEDVPGNSAYLTGLSIIGGMTLFPSALEVKILTP*