Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014579.01.T01 | XP_039687193.1 | 97.268 | 549 | 15 | 0 | 1 | 549 | 86 | 634 | 0 | 1081 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014579.01.T01 | A0A396IRW3 | 97.268 | 549 | 15 | 0 | 1 | 549 | 86 | 634 | 0.0 | 1081 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048058.01 | MsG0380014579.01 | 0.801532 | 8.612261e-49 | 4.122698e-46 |
| MsG0180003181.01 | MsG0380014579.01 | 0.835807 | 1.353233e-56 | 1.673141e-53 |
| MsG0180003303.01 | MsG0380014579.01 | 0.820587 | 6.341010e-53 | 5.037633e-50 |
| MsG0180004139.01 | MsG0380014579.01 | 0.805034 | 1.622322e-49 | 8.494056e-47 |
| MsG0180005451.01 | MsG0380014579.01 | 0.807990 | 3.859351e-50 | 2.180784e-47 |
| MsG0280010735.01 | MsG0380014579.01 | 0.824221 | 9.075840e-54 | 7.989213e-51 |
| MsG0380014579.01 | MsG0380017719.01 | 0.801569 | 8.464039e-49 | 4.055458e-46 |
| MsG0380014579.01 | MsG0380017797.01 | 0.833043 | 6.690542e-56 | 7.614882e-53 |
| MsG0380014579.01 | MsG0480019170.01 | 0.813579 | 2.383251e-51 | 1.562346e-48 |
| MsG0380014579.01 | MsG0480020917.01 | 0.816714 | 4.796757e-52 | 3.424627e-49 |
| MsG0380014579.01 | MsG0480022719.01 | 0.810190 | 1.303927e-50 | 7.808309e-48 |
| MsG0380014579.01 | MsG0480023240.01 | 0.816576 | 5.148917e-52 | 3.662262e-49 |
| MsG0380014579.01 | MsG0580029658.01 | 0.800460 | 1.426104e-48 | 6.643932e-46 |
| MsG0380014579.01 | MsG0680030684.01 | 0.820629 | 6.199027e-53 | 4.930544e-50 |
| MsG0380014579.01 | MsG0780039587.01 | 0.803758 | 2.992306e-49 | 1.516128e-46 |
| MsG0380014579.01 | MsG0780041310.01 | 0.819803 | 9.585568e-53 | 7.452287e-50 |
| MsG0380014579.01 | MsG0780041423.01 | 0.833861 | 4.180742e-56 | 4.876464e-53 |
| MsG0380014579.01 | MsG0880042206.01 | 0.824406 | 8.213027e-54 | 7.267485e-51 |
| MsG0380014579.01 | MsG0880042329.01 | 0.808037 | 3.769934e-50 | 2.132867e-47 |
| MsG0380014579.01 | MsG0880044546.01 | 0.809137 | 2.195443e-50 | 1.278744e-47 |
| MsG0380014579.01 | MsG0880045165.01 | 0.808670 | 2.763779e-50 | 1.589788e-47 |
| MsG0380014579.01 | MsG0880045914.01 | 0.811117 | 8.219890e-51 | 5.045153e-48 |
| MsG0380014579.01 | MsG0880046404.01 | 0.805885 | 1.075521e-49 | 5.755890e-47 |
| MsG0380014579.01 | MsG0880046684.01 | 0.816462 | 5.462398e-52 | 3.872852e-49 |
| MsG0280006519.01 | MsG0380014579.01 | 0.808118 | 3.623384e-50 | 2.054430e-47 |
| MsG0280006728.01 | MsG0380014579.01 | 0.822645 | 2.120625e-53 | 1.785589e-50 |
| MsG0280007790.01 | MsG0380014579.01 | 0.809085 | 2.252142e-50 | 1.309910e-47 |
| MsG0280008614.01 | MsG0380014579.01 | 0.801895 | 7.255821e-49 | 3.505579e-46 |
| MsG0280010022.01 | MsG0380014579.01 | 0.811168 | 8.012453e-51 | 4.924409e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014579.01.T01 | AT5G55960 | 72.810 | 548 | 148 | 1 | 2 | 549 | 77 | 623 | 0.0 | 840 |
Find 93 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAAACAATGGTGTTTATT+TGG | 0.106753 | 3:+56701631 | MsG0380014579.01.T01:CDS |
| CTTCGTTTGTTGGTTTCTTT+TGG | 0.173993 | 3:+56700796 | MsG0380014579.01.T01:CDS |
| CTTTGAGGACGAATAGTTTC+AGG | 0.233253 | 3:+56700932 | MsG0380014579.01.T01:CDS |
| AACAGACCATTGTTTCGTTT+TGG | 0.246889 | 3:+56700596 | MsG0380014579.01.T01:CDS |
| CTTATTGTTGTTATGATTGT+AGG | 0.255579 | 3:+56701024 | MsG0380014579.01.T01:CDS |
| TATGAGAAGCTTGGTGGTTT+TGG | 0.266094 | 3:+56700835 | MsG0380014579.01.T01:CDS |
| ACTCTAGTGGAGATTGAAAT+TGG | 0.286523 | 3:-56701717 | None:intergenic |
| TTATGGTGCGTCAGAAATTC+TGG | 0.289834 | 3:+56702010 | MsG0380014579.01.T01:CDS |
| GGAAATAGTGCTTATCTTAC+TGG | 0.290003 | 3:+56702044 | MsG0380014579.01.T01:CDS |
| TCAAACAATGGTGTTTATTT+GGG | 0.301219 | 3:+56701632 | MsG0380014579.01.T01:CDS |
| TTGAATACTATTGTTGCAAT+TGG | 0.302560 | 3:+56701000 | MsG0380014579.01.T01:CDS |
| AGCTATTTCAGGTGTTCTTT+TGG | 0.305598 | 3:+56701764 | MsG0380014579.01.T01:CDS |
| TTCAAAGTTGCTTCGTTTGT+TGG | 0.310158 | 3:+56700786 | MsG0380014579.01.T01:CDS |
| TGCTGCCAATATTTCCATCT+TGG | 0.311629 | 3:+56701895 | MsG0380014579.01.T01:CDS |
| TGTGATCACGCGCGAAGATT+TGG | 0.325974 | 3:+56701455 | MsG0380014579.01.T01:CDS |
| AGTTAGATGTGTTGATGTTT+TGG | 0.328459 | 3:+56701737 | MsG0380014579.01.T01:CDS |
| CTTACTGGACTCAGCATCAT+TGG | 0.330133 | 3:+56702059 | MsG0380014579.01.T01:CDS |
| CTTTGTTCGATTCCTCTTAG+AGG | 0.338810 | 3:+56700568 | MsG0380014579.01.T01:CDS |
| CTCTGCAGCACCAGAGACTA+TGG | 0.343815 | 3:-56701592 | None:intergenic |
| AACAGTGTAGAGAATGAAAA+TGG | 0.356033 | 3:-56700500 | None:intergenic |
| CGTAAATTTGACTCCATTCA+CGG | 0.367809 | 3:-56701404 | None:intergenic |
| TTCAACACCTTCAAGAGCTT+TGG | 0.368310 | 3:+56701326 | MsG0380014579.01.T01:CDS |
| GGATGAGGATTAGGAGGCTT+TGG | 0.370227 | 3:-56700742 | None:intergenic |
| AGTAATTATTCTGAGAGAAT+TGG | 0.380073 | 3:+56701135 | MsG0380014579.01.T01:CDS |
| CTACACTGTTTCCAAGCTCT+TGG | 0.380228 | 3:+56700513 | MsG0380014579.01.T01:CDS |
| TGCACACTTTGTCTTCTTTG+AGG | 0.391178 | 3:+56700917 | MsG0380014579.01.T01:CDS |
| GCAAGCCAAGATGGAAATAT+TGG | 0.391390 | 3:-56701900 | None:intergenic |
| TTACTGGACTCAGCATCATT+GGG | 0.394651 | 3:+56702060 | MsG0380014579.01.T01:CDS |
| TGGGCTGAGCCTCTCACGTT+GGG | 0.395094 | 3:+56700616 | MsG0380014579.01.T01:CDS |
| GAAATTCTGGAAGATGTTCC+TGG | 0.395224 | 3:+56702023 | MsG0380014579.01.T01:CDS |
| GTAAGATAAGCACTATTTCC+AGG | 0.400716 | 3:-56702041 | None:intergenic |
| AAAACCCTGAAAACCGCAAC+AGG | 0.401224 | 3:-56700664 | None:intergenic |
| CTCCTACTTGGATGAGGATT+AGG | 0.404149 | 3:-56700751 | None:intergenic |
| GATGGAAGGCAGATACATAC+TGG | 0.414717 | 3:+56701950 | MsG0380014579.01.T01:CDS |
| TGAATACTATTGTTGCAATT+GGG | 0.432228 | 3:+56701001 | MsG0380014579.01.T01:CDS |
| CTTTGTTTAGACTCATTATG+AGG | 0.444386 | 3:+56700716 | MsG0380014579.01.T01:CDS |
| TAGATACTGTTCCAAGAGCT+TGG | 0.444817 | 3:-56700524 | None:intergenic |
| TTATTGTTGTTATGATTGTA+GGG | 0.447645 | 3:+56701025 | MsG0380014579.01.T01:CDS |
| ATGGAAGAGAATGATGTTGC+TGG | 0.456312 | 3:+56701171 | MsG0380014579.01.T01:CDS |
| ACTGTTTCTGAACAAATTGA+TGG | 0.457633 | 3:+56701228 | MsG0380014579.01.T01:CDS |
| AGTATCTAAGACCTCTTCAA+TGG | 0.469448 | 3:+56700539 | MsG0380014579.01.T01:CDS |
| TTCTGAACAAATTGATGGGT+TGG | 0.469475 | 3:+56701233 | MsG0380014579.01.T01:CDS |
| GCTAGTAGTACAACCGTGCT+TGG | 0.476894 | 3:+56701534 | MsG0380014579.01.T01:CDS |
| GATTTGGTTGAGAAGGCAAA+AGG | 0.479139 | 3:+56701471 | MsG0380014579.01.T01:CDS |
| AACAGTCTCATAGAACTTAG+TGG | 0.482735 | 3:-56701211 | None:intergenic |
| GTCTGTTGAATTCCTCTAAG+AGG | 0.484116 | 3:-56700580 | None:intergenic |
| ATCATTGCTTATGAGAAGCT+TGG | 0.485268 | 3:+56700826 | MsG0380014579.01.T01:CDS |
| TTCTCTTAAGTTACATGTTG+AGG | 0.486310 | 3:+56701110 | MsG0380014579.01.T01:CDS |
| AATCCACTACGTCTCCTACT+TGG | 0.487388 | 3:-56700763 | None:intergenic |
| CACCATAATCCATAAGGAAA+AGG | 0.490822 | 3:-56701995 | None:intergenic |
| ATTCTCATTACATCAGAGTC+TGG | 0.492852 | 3:+56701663 | MsG0380014579.01.T01:CDS |
| TGTTCTTGCTGTTCCTGTTG+CGG | 0.498335 | 3:+56700651 | MsG0380014579.01.T01:CDS |
| CTGACGCACCATAATCCATA+AGG | 0.499912 | 3:-56702001 | None:intergenic |
| GGTTTGACCAAAGCTCTTGA+AGG | 0.501378 | 3:-56701333 | None:intergenic |
| ATCTTGGCTTGCGACGATTC+CGG | 0.503967 | 3:+56701911 | MsG0380014579.01.T01:CDS |
| GGCAGCTTTGCAACTAGTGA+TGG | 0.505441 | 3:+56701932 | MsG0380014579.01.T01:CDS |
| GAAGGTGTTGAAGAGTTAGC+AGG | 0.516616 | 3:-56701315 | None:intergenic |
| CATAGTCTCTGGTGCTGCAG+AGG | 0.517303 | 3:+56701593 | MsG0380014579.01.T01:CDS |
| ATTGCTAATTCCATAGTCTC+TGG | 0.519489 | 3:+56701582 | MsG0380014579.01.T01:CDS |
| GCGCGAAGATTTGGTTGAGA+AGG | 0.522026 | 3:+56701464 | MsG0380014579.01.T01:CDS |
| GTATCTAAGACCTCTTCAAT+GGG | 0.529771 | 3:+56700540 | MsG0380014579.01.T01:CDS |
| TTGGGCTGAGCCTCTCACGT+TGG | 0.529847 | 3:+56700615 | MsG0380014579.01.T01:CDS |
| CTACTTGGATGAGGATTAGG+AGG | 0.531081 | 3:-56700748 | None:intergenic |
| ATTGCTTATGAGAAGCTTGG+TGG | 0.533709 | 3:+56700829 | MsG0380014579.01.T01:CDS |
| AACATGACTGAAATTGTGAC+TGG | 0.534198 | 3:+56701267 | MsG0380014579.01.T01:CDS |
| ATCACTAGTTGCAAAGCTGC+CGG | 0.535131 | 3:-56701930 | None:intergenic |
| GATGGAAATATTGGCAGCAA+AGG | 0.535841 | 3:-56701891 | None:intergenic |
| GTCGGGTTAAGAACCGTGAA+TGG | 0.536715 | 3:+56701391 | MsG0380014579.01.T01:CDS |
| CTGTTTCTGAACAAATTGAT+GGG | 0.541196 | 3:+56701229 | MsG0380014579.01.T01:CDS |
| GGAATCGTCGCAAGCCAAGA+TGG | 0.545863 | 3:-56701909 | None:intergenic |
| ATTTGGTTGAGAAGGCAAAA+GGG | 0.546043 | 3:+56701472 | MsG0380014579.01.T01:CDS |
| AGAGAATGATGTTGCTGGAA+TGG | 0.549959 | 3:+56701176 | MsG0380014579.01.T01:CDS |
| TCTTATAAGATTGGTGTCGA+AGG | 0.551265 | 3:+56701072 | MsG0380014579.01.T01:CDS |
| TGTGTTTAGCTCTAAGAATG+TGG | 0.556510 | 3:+56700885 | MsG0380014579.01.T01:CDS |
| AATTGGTGTTAAGAAGTGGA+TGG | 0.563893 | 3:+56701152 | MsG0380014579.01.T01:CDS |
| ATCAACACATCTAACTCTAG+TGG | 0.580499 | 3:-56701730 | None:intergenic |
| AGAGACTATGGAATTAGCAA+TGG | 0.587230 | 3:-56701580 | None:intergenic |
| CTCCTAATCCTCATCCAAGT+AGG | 0.589388 | 3:+56700749 | MsG0380014579.01.T01:CDS |
| CAAAGCACAGCCCATTGAAG+AGG | 0.592676 | 3:-56700550 | None:intergenic |
| ATTGTTCCCATCAGCTCTTG+AGG | 0.594306 | 3:+56702091 | MsG0380014579.01.T01:CDS |
| CTACGTCTCCTACTTGGATG+AGG | 0.594938 | 3:-56700757 | None:intergenic |
| TACTGGACTCAGCATCATTG+GGG | 0.603881 | 3:+56702061 | MsG0380014579.01.T01:CDS |
| AGAGAATTGGTGTTAAGAAG+TGG | 0.621812 | 3:+56701148 | MsG0380014579.01.T01:CDS |
| CTCATTACATCAGAGTCTGG+TGG | 0.626963 | 3:+56701666 | MsG0380014579.01.T01:CDS |
| TCTGTGAGTCCCAACGTGAG+AGG | 0.628078 | 3:-56700625 | None:intergenic |
| GCTTTGCAACTAGTGATGGA+AGG | 0.631735 | 3:+56701936 | MsG0380014579.01.T01:CDS |
| CATCCAAGTAGGAGACGTAG+TGG | 0.636201 | 3:+56700760 | MsG0380014579.01.T01:CDS |
| CTCAGCCCAAAACGAAACAA+TGG | 0.647811 | 3:-56700602 | None:intergenic |
| ATGGAAGGCAGATACATACT+GGG | 0.661149 | 3:+56701951 | MsG0380014579.01.T01:CDS |
| ATGTAACTTAAGAGAAACAA+CGG | 0.662458 | 3:-56701103 | None:intergenic |
| ACATGACTGAAATTGTGACT+GGG | 0.689782 | 3:+56701268 | MsG0380014579.01.T01:CDS |
| ACTGGACTCAGCATCATTGG+GGG | 0.699783 | 3:+56702062 | MsG0380014579.01.T01:CDS |
| TGAATGGAGTCAAATTTACG+AGG | 0.761966 | 3:+56701407 | MsG0380014579.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTCTTTTCTTATAAGAT+TGG | + | Chr3:56701063-56701082 | MsG0380014579.01.T01:CDS | 15.0% |
| !!! | TTATTGTTGTTATGATTGTA+GGG | + | Chr3:56701025-56701044 | MsG0380014579.01.T01:CDS | 20.0% |
| ! | ATGTAACTTAAGAGAAACAA+CGG | - | Chr3:56701106-56701125 | None:intergenic | 25.0% |
| ! | TCAAACAATGGTGTTTATTT+GGG | + | Chr3:56701632-56701651 | MsG0380014579.01.T01:CDS | 25.0% |
| ! | TGAATACTATTGTTGCAATT+GGG | + | Chr3:56701001-56701020 | MsG0380014579.01.T01:CDS | 25.0% |
| ! | TTGAATACTATTGTTGCAAT+TGG | + | Chr3:56701000-56701019 | MsG0380014579.01.T01:CDS | 25.0% |
| !! | AGTAATTATTCTGAGAGAAT+TGG | + | Chr3:56701135-56701154 | MsG0380014579.01.T01:CDS | 25.0% |
| !! | CAATTTTGTATCTCAAACAA+TGG | + | Chr3:56701620-56701639 | MsG0380014579.01.T01:CDS | 25.0% |
| !! | CTTATTGTTGTTATGATTGT+AGG | + | Chr3:56701024-56701043 | MsG0380014579.01.T01:CDS | 25.0% |
| !!! | AGTTTTTGAGTTTGAAAAGT+CGG | + | Chr3:56701373-56701392 | MsG0380014579.01.T01:CDS | 25.0% |
| !!! | TAGTGCTTTTTTTACAAGAA+GGG | + | Chr3:56700966-56700985 | MsG0380014579.01.T01:CDS | 25.0% |
| !!! | TTAGTGCTTTTTTTACAAGA+AGG | + | Chr3:56700965-56700984 | MsG0380014579.01.T01:CDS | 25.0% |
| AACAGTGTAGAGAATGAAAA+TGG | - | Chr3:56700503-56700522 | None:intergenic | 30.0% | |
| CTCAAACAATGGTGTTTATT+TGG | + | Chr3:56701631-56701650 | MsG0380014579.01.T01:CDS | 30.0% | |
| TTCTCTTAAGTTACATGTTG+AGG | + | Chr3:56701110-56701129 | MsG0380014579.01.T01:CDS | 30.0% | |
| TTGAAAAAATGCAATCTCAG+CGG | - | Chr3:56701793-56701812 | None:intergenic | 30.0% | |
| ! | CTCAAAAACTTTTCTGTGTA+TGG | - | Chr3:56701363-56701382 | None:intergenic | 30.0% |
| ! | CTTTGTTTAGACTCATTATG+AGG | + | Chr3:56700716-56700735 | MsG0380014579.01.T01:CDS | 30.0% |
| !! | ACTGTTTCTGAACAAATTGA+TGG | + | Chr3:56701228-56701247 | MsG0380014579.01.T01:CDS | 30.0% |
| !! | AGTTAGATGTGTTGATGTTT+TGG | + | Chr3:56701737-56701756 | MsG0380014579.01.T01:CDS | 30.0% |
| !! | CTGTTTCTGAACAAATTGAT+GGG | + | Chr3:56701229-56701248 | MsG0380014579.01.T01:CDS | 30.0% |
| !! | GTTTTGGATAAAGCTATTTC+AGG | + | Chr3:56701753-56701772 | MsG0380014579.01.T01:CDS | 30.0% |
| !!! | GTTTTTGAGTTTGAAAAGTC+GGG | + | Chr3:56701374-56701393 | MsG0380014579.01.T01:CDS | 30.0% |
| !!! | TTTTTCAAGGATGTCTTACT+TGG | + | Chr3:56701805-56701824 | MsG0380014579.01.T01:CDS | 30.0% |
| AACAGTCTCATAGAACTTAG+TGG | - | Chr3:56701214-56701233 | None:intergenic | 35.0% | |
| AACATGACTGAAATTGTGAC+TGG | + | Chr3:56701267-56701286 | MsG0380014579.01.T01:CDS | 35.0% | |
| ACATGACTGAAATTGTGACT+GGG | + | Chr3:56701268-56701287 | MsG0380014579.01.T01:CDS | 35.0% | |
| ACTCTAGTGGAGATTGAAAT+TGG | - | Chr3:56701720-56701739 | None:intergenic | 35.0% | |
| AGAGACTATGGAATTAGCAA+TGG | - | Chr3:56701583-56701602 | None:intergenic | 35.0% | |
| ATCAACACATCTAACTCTAG+TGG | - | Chr3:56701733-56701752 | None:intergenic | 35.0% | |
| ATCATTGCTTATGAGAAGCT+TGG | + | Chr3:56700826-56700845 | MsG0380014579.01.T01:CDS | 35.0% | |
| ATTCTCATTACATCAGAGTC+TGG | + | Chr3:56701663-56701682 | MsG0380014579.01.T01:CDS | 35.0% | |
| ATTGCTAATTCCATAGTCTC+TGG | + | Chr3:56701582-56701601 | MsG0380014579.01.T01:CDS | 35.0% | |
| ATTTGGTTGAGAAGGCAAAA+GGG | + | Chr3:56701472-56701491 | MsG0380014579.01.T01:CDS | 35.0% | |
| CACCATAATCCATAAGGAAA+AGG | - | Chr3:56701998-56702017 | None:intergenic | 35.0% | |
| CGTAAATTTGACTCCATTCA+CGG | - | Chr3:56701407-56701426 | None:intergenic | 35.0% | |
| GGAAATAGTGCTTATCTTAC+TGG | + | Chr3:56702044-56702063 | MsG0380014579.01.T01:CDS | 35.0% | |
| GTAAGATAAGCACTATTTCC+AGG | - | Chr3:56702044-56702063 | None:intergenic | 35.0% | |
| TGAATGGAGTCAAATTTACG+AGG | + | Chr3:56701407-56701426 | MsG0380014579.01.T01:CDS | 35.0% | |
| TTCAAAGTTGCTTCGTTTGT+TGG | + | Chr3:56700786-56700805 | MsG0380014579.01.T01:CDS | 35.0% | |
| ! | AACAGACCATTGTTTCGTTT+TGG | + | Chr3:56700596-56700615 | MsG0380014579.01.T01:CDS | 35.0% |
| ! | AACTTTTCTGTGTATGGTGA+AGG | - | Chr3:56701357-56701376 | None:intergenic | 35.0% |
| ! | ACAGACCATTGTTTCGTTTT+GGG | + | Chr3:56700597-56700616 | MsG0380014579.01.T01:CDS | 35.0% |
| ! | AGTATCTAAGACCTCTTCAA+TGG | + | Chr3:56700539-56700558 | MsG0380014579.01.T01:CDS | 35.0% |
| ! | ATGATTGTAGGGTTTTTGAC+TGG | + | Chr3:56701036-56701055 | MsG0380014579.01.T01:CDS | 35.0% |
| ! | ATTTTTACCTCAAGAGCTGA+TGG | - | Chr3:56702101-56702120 | None:intergenic | 35.0% |
| ! | GTATCTAAGACCTCTTCAAT+GGG | + | Chr3:56700540-56700559 | MsG0380014579.01.T01:CDS | 35.0% |
| ! | TGTTACTCACCTTTTCCTTA+TGG | + | Chr3:56701986-56702005 | MsG0380014579.01.T01:CDS | 35.0% |
| ! | TTCTGAACAAATTGATGGGT+TGG | + | Chr3:56701233-56701252 | MsG0380014579.01.T01:CDS | 35.0% |
| ! | TTTTTACCTCAAGAGCTGAT+GGG | - | Chr3:56702100-56702119 | None:intergenic | 35.0% |
| !! | AATTGGTGTTAAGAAGTGGA+TGG | + | Chr3:56701152-56701171 | MsG0380014579.01.T01:CDS | 35.0% |
| !! | AGAGAATTGGTGTTAAGAAG+TGG | + | Chr3:56701148-56701167 | MsG0380014579.01.T01:CDS | 35.0% |
| !! | AGCTATTTCAGGTGTTCTTT+TGG | + | Chr3:56701764-56701783 | MsG0380014579.01.T01:CDS | 35.0% |
| !! | CACCTTTTCCTTATGGATTA+TGG | + | Chr3:56701993-56702012 | MsG0380014579.01.T01:CDS | 35.0% |
| !! | GCAAAAGGGTTTGCTTTTAA+AGG | + | Chr3:56701486-56701505 | MsG0380014579.01.T01:CDS | 35.0% |
| !! | GTCTTACTTGGCTTTTGTTT+AGG | + | Chr3:56701817-56701836 | MsG0380014579.01.T01:CDS | 35.0% |
| !! | TCTTATAAGATTGGTGTCGA+AGG | + | Chr3:56701072-56701091 | MsG0380014579.01.T01:CDS | 35.0% |
| !! | TGATTGTAGGGTTTTTGACT+GGG | + | Chr3:56701037-56701056 | MsG0380014579.01.T01:CDS | 35.0% |
| !! | TGTGTTTAGCTCTAAGAATG+TGG | + | Chr3:56700885-56700904 | MsG0380014579.01.T01:CDS | 35.0% |
| !! | TTGGTGCTTCATCACTTTTA+GGG | + | Chr3:56700854-56700873 | MsG0380014579.01.T01:CDS | 35.0% |
| !!! | CTTCGTTTGTTGGTTTCTTT+TGG | + | Chr3:56700796-56700815 | MsG0380014579.01.T01:CDS | 35.0% |
| !!! | GCTGAGATTGCATTTTTTCA+AGG | + | Chr3:56701792-56701811 | MsG0380014579.01.T01:CDS | 35.0% |
| !!! | TGCTTTTTTTACAAGAAGGG+TGG | + | Chr3:56700969-56700988 | MsG0380014579.01.T01:CDS | 35.0% |
| !!! | TTTGGTGCTTCATCACTTTT+AGG | + | Chr3:56700853-56700872 | MsG0380014579.01.T01:CDS | 35.0% |
| AGAGAATGATGTTGCTGGAA+TGG | + | Chr3:56701176-56701195 | MsG0380014579.01.T01:CDS | 40.0% | |
| ATGGAAGAGAATGATGTTGC+TGG | + | Chr3:56701171-56701190 | MsG0380014579.01.T01:CDS | 40.0% | |
| ATGGAAGGCAGATACATACT+GGG | + | Chr3:56701951-56701970 | MsG0380014579.01.T01:CDS | 40.0% | |
| ATTGCTTATGAGAAGCTTGG+TGG | + | Chr3:56700829-56700848 | MsG0380014579.01.T01:CDS | 40.0% | |
| CTTTGTTCGATTCCTCTTAG+AGG | + | Chr3:56700568-56700587 | MsG0380014579.01.T01:CDS | 40.0% | |
| GATGGAAATATTGGCAGCAA+AGG | - | Chr3:56701894-56701913 | None:intergenic | 40.0% | |
| GCAAGCCAAGATGGAAATAT+TGG | - | Chr3:56701903-56701922 | None:intergenic | 40.0% | |
| GTCTGTTGAATTCCTCTAAG+AGG | - | Chr3:56700583-56700602 | None:intergenic | 40.0% | |
| TAGATACTGTTCCAAGAGCT+TGG | - | Chr3:56700527-56700546 | None:intergenic | 40.0% | |
| TGCACACTTTGTCTTCTTTG+AGG | + | Chr3:56700917-56700936 | MsG0380014579.01.T01:CDS | 40.0% | |
| TGCTGCCAATATTTCCATCT+TGG | + | Chr3:56701895-56701914 | MsG0380014579.01.T01:CDS | 40.0% | |
| TTACTGGACTCAGCATCATT+GGG | + | Chr3:56702060-56702079 | MsG0380014579.01.T01:CDS | 40.0% | |
| TTATGGTGCGTCAGAAATTC+TGG | + | Chr3:56702010-56702029 | MsG0380014579.01.T01:CDS | 40.0% | |
| TTCAACACCTTCAAGAGCTT+TGG | + | Chr3:56701326-56701345 | MsG0380014579.01.T01:CDS | 40.0% | |
| ! | ATACATACTGGGCGTTTTCT+TGG | + | Chr3:56701962-56701981 | MsG0380014579.01.T01:CDS | 40.0% |
| ! | CTTTGAGGACGAATAGTTTC+AGG | + | Chr3:56700932-56700951 | MsG0380014579.01.T01:CDS | 40.0% |
| ! | GAAATTCTGGAAGATGTTCC+TGG | + | Chr3:56702023-56702042 | MsG0380014579.01.T01:CDS | 40.0% |
| ! | GATTTGGTTGAGAAGGCAAA+AGG | + | Chr3:56701471-56701490 | MsG0380014579.01.T01:CDS | 40.0% |
| ! | TTTTGTACTGCTTCCAAGCA+CGG | - | Chr3:56701550-56701569 | None:intergenic | 40.0% |
| ! | TTTTTACAAGAAGGGTGGTG+AGG | + | Chr3:56700974-56700993 | MsG0380014579.01.T01:CDS | 40.0% |
| !! | CGGTTTTCAGGGTTTTTGTT+GGG | + | Chr3:56700671-56700690 | MsG0380014579.01.T01:CDS | 40.0% |
| !! | GATTGTAGGGTTTTTGACTG+GGG | + | Chr3:56701038-56701057 | MsG0380014579.01.T01:CDS | 40.0% |
| !! | TATGAGAAGCTTGGTGGTTT+TGG | + | Chr3:56700835-56700854 | MsG0380014579.01.T01:CDS | 40.0% |
| !!! | GCTTCATCACTTTTAGGGTT+AGG | + | Chr3:56700859-56700878 | MsG0380014579.01.T01:CDS | 40.0% |
| AAAACCCTGAAAACCGCAAC+AGG | - | Chr3:56700667-56700686 | None:intergenic | 45.0% | |
| AATCCACTACGTCTCCTACT+TGG | - | Chr3:56700766-56700785 | None:intergenic | 45.0% | |
| ATCACTAGTTGCAAAGCTGC+CGG | - | Chr3:56701933-56701952 | None:intergenic | 45.0% | |
| ATTGTTCCCATCAGCTCTTG+AGG | + | Chr3:56702091-56702110 | MsG0380014579.01.T01:CDS | 45.0% | |
| CTACACTGTTTCCAAGCTCT+TGG | + | Chr3:56700513-56700532 | MsG0380014579.01.T01:CDS | 45.0% | |
| CTACTTGGATGAGGATTAGG+AGG | - | Chr3:56700751-56700770 | None:intergenic | 45.0% | |
| CTCAGCCCAAAACGAAACAA+TGG | - | Chr3:56700605-56700624 | None:intergenic | 45.0% | |
| CTCATTACATCAGAGTCTGG+TGG | + | Chr3:56701666-56701685 | MsG0380014579.01.T01:CDS | 45.0% | |
| CTCCTAATCCTCATCCAAGT+AGG | + | Chr3:56700749-56700768 | MsG0380014579.01.T01:CDS | 45.0% | |
| CTCCTACTTGGATGAGGATT+AGG | - | Chr3:56700754-56700773 | None:intergenic | 45.0% | |
| CTGACGCACCATAATCCATA+AGG | - | Chr3:56702004-56702023 | None:intergenic | 45.0% | |
| CTTACTGGACTCAGCATCAT+TGG | + | Chr3:56702059-56702078 | MsG0380014579.01.T01:CDS | 45.0% | |
| GATGGAAGGCAGATACATAC+TGG | + | Chr3:56701950-56701969 | MsG0380014579.01.T01:CDS | 45.0% | |
| GGTTTGACCAAAGCTCTTGA+AGG | - | Chr3:56701336-56701355 | None:intergenic | 45.0% | |
| TACTGGACTCAGCATCATTG+GGG | + | Chr3:56702061-56702080 | MsG0380014579.01.T01:CDS | 45.0% | |
| ! | GCTTTGCAACTAGTGATGGA+AGG | + | Chr3:56701936-56701955 | MsG0380014579.01.T01:CDS | 45.0% |
| ! | TGTTCCTGTTGCGGTTTTCA+GGG | + | Chr3:56700660-56700679 | MsG0380014579.01.T01:CDS | 45.0% |
| !! | GAAGGTGTTGAAGAGTTAGC+AGG | - | Chr3:56701318-56701337 | None:intergenic | 45.0% |
| !! | GCGGTTTTCAGGGTTTTTGT+TGG | + | Chr3:56700670-56700689 | MsG0380014579.01.T01:CDS | 45.0% |
| !! | TGTTCTTGCTGTTCCTGTTG+CGG | + | Chr3:56700651-56700670 | MsG0380014579.01.T01:CDS | 45.0% |
| ACTGGACTCAGCATCATTGG+GGG | + | Chr3:56702062-56702081 | MsG0380014579.01.T01:CDS | 50.0% | |
| CAAAGCACAGCCCATTGAAG+AGG | - | Chr3:56700553-56700572 | None:intergenic | 50.0% | |
| CATCCAAGTAGGAGACGTAG+TGG | + | Chr3:56700760-56700779 | MsG0380014579.01.T01:CDS | 50.0% | |
| CTACGTCTCCTACTTGGATG+AGG | - | Chr3:56700760-56700779 | None:intergenic | 50.0% | |
| GCTAGTAGTACAACCGTGCT+TGG | + | Chr3:56701534-56701553 | MsG0380014579.01.T01:CDS | 50.0% | |
| GGATGAGGATTAGGAGGCTT+TGG | - | Chr3:56700745-56700764 | None:intergenic | 50.0% | |
| GGCAGCTTTGCAACTAGTGA+TGG | + | Chr3:56701932-56701951 | MsG0380014579.01.T01:CDS | 50.0% | |
| GTCGGGTTAAGAACCGTGAA+TGG | + | Chr3:56701391-56701410 | MsG0380014579.01.T01:CDS | 50.0% | |
| TGTGATCACGCGCGAAGATT+TGG | + | Chr3:56701455-56701474 | MsG0380014579.01.T01:CDS | 50.0% | |
| ! | CTGTTCCTGTTGCGGTTTTC+AGG | + | Chr3:56700659-56700678 | MsG0380014579.01.T01:CDS | 50.0% |
| ! | GCGCGAAGATTTGGTTGAGA+AGG | + | Chr3:56701464-56701483 | MsG0380014579.01.T01:CDS | 50.0% |
| !! | ATCTTGGCTTGCGACGATTC+CGG | + | Chr3:56701911-56701930 | MsG0380014579.01.T01:CDS | 50.0% |
| CTCTGCAGCACCAGAGACTA+TGG | - | Chr3:56701595-56701614 | None:intergenic | 55.0% | |
| GGAATCGTCGCAAGCCAAGA+TGG | - | Chr3:56701912-56701931 | None:intergenic | 55.0% | |
| TCTGTGAGTCCCAACGTGAG+AGG | - | Chr3:56700628-56700647 | None:intergenic | 55.0% | |
| !! | CATAGTCTCTGGTGCTGCAG+AGG | + | Chr3:56701593-56701612 | MsG0380014579.01.T01:CDS | 55.0% |
| TGGGCTGAGCCTCTCACGTT+GGG | + | Chr3:56700616-56700635 | MsG0380014579.01.T01:CDS | 60.0% | |
| TTGGGCTGAGCCTCTCACGT+TGG | + | Chr3:56700615-56700634 | MsG0380014579.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 56700484 | 56702133 | 56700484 | ID=MsG0380014579.01;Name=MsG0380014579.01 |
| Chr3 | mRNA | 56700484 | 56702133 | 56700484 | ID=MsG0380014579.01.T01;Parent=MsG0380014579.01;Name=MsG0380014579.01.T01;_AED=0.40;_eAED=0.40;_QI=0|-1|0|1|-1|1|1|0|549 |
| Chr3 | exon | 56700484 | 56702133 | 56700484 | ID=MsG0380014579.01.T01:exon:23888;Parent=MsG0380014579.01.T01 |
| Chr3 | CDS | 56700484 | 56702133 | 56700484 | ID=MsG0380014579.01.T01:cds;Parent=MsG0380014579.01.T01 |
| Gene Sequence |
| Protein sequence |
