AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880042329.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042329.01.T01 MTR_8g013720 88.446 727 18 5 1 679 1 709 0.0 1259
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042329.01.T01 AT3G16270 54.658 730 238 19 1 678 1 689 0.0 699
MsG0880042329.01.T01 AT3G16270 54.658 730 238 19 1 678 1 689 0.0 699
MsG0880042329.01.T01 AT3G16270 54.658 730 238 19 1 678 1 689 0.0 699

Find 169 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATACGTTTCTTTAAATT+AGG 0.165643 8:+7157413 MsG0880042329.01.T01:five_prime_UTR
GGACAGGTTCTTGGCCTTCT+AGG 0.220244 8:+7160227 MsG0880042329.01.T01:intron
GTCAACGACCTTTGAAGATT+TGG 0.266142 8:-7159166 None:intergenic
GAATTGAATCGAATGAGATT+TGG 0.280539 8:-7157352 None:intergenic
GGAGTTTGAGATGTCAAATT+TGG 0.282418 8:-7161105 None:intergenic
TAAAGCTCCAATCTCCTATT+TGG 0.284700 8:+7159500 MsG0880042329.01.T01:CDS
AATTGAATCGAATGAGATTT+GGG 0.296937 8:-7157351 None:intergenic
GAAAGGTGATGCACTAAATA+AGG 0.303152 8:+7158868 MsG0880042329.01.T01:CDS
GAATACGTTTCTTTAAATTA+GGG 0.304126 8:+7157414 MsG0880042329.01.T01:five_prime_UTR
CCTACTCAACCTCTTAATTA+TGG 0.311908 8:+7160937 MsG0880042329.01.T01:CDS
AGTGAAAACCAAAGTAGTTT+TGG 0.317657 8:+7159238 MsG0880042329.01.T01:CDS
TGGAGACAAATACAAATAAA+AGG 0.321382 8:-7161981 None:intergenic
TCCAAGCAAGGAAATCATAA+TGG 0.329858 8:+7160661 MsG0880042329.01.T01:CDS
CTTGAGAGAAAAGGCTATAA+AGG 0.331125 8:+7160095 MsG0880042329.01.T01:CDS
GTCTAGTGGTTCTTGGAATC+AGG 0.337483 8:+7159276 MsG0880042329.01.T01:CDS
ATGATTTCCTTGCTTGGAAC+TGG 0.339090 8:-7160656 None:intergenic
TGGGTCTGTTAGTGATTTAA+TGG 0.356437 8:+7160681 MsG0880042329.01.T01:CDS
CCCATTGCACCATAATTAAG+AGG 0.358920 8:-7160946 None:intergenic
CACCTTCTCAAGATCTTAAC+AGG 0.361359 8:+7158972 MsG0880042329.01.T01:CDS
TTAAGAGGTTGAGTAGGATA+TGG 0.362319 8:-7160931 None:intergenic
ACTCTTGTAGCTTCCACTTC+CGG 0.364144 8:-7159143 None:intergenic
AATTTCTTCTAATTTGTAAA+CGG 0.364963 8:-7157555 None:intergenic
ATTTCTTCTAATTTGTAAAC+GGG 0.365218 8:-7157554 None:intergenic
AGAATCAGTCTAGTGGTTCT+TGG 0.365985 8:+7159269 MsG0880042329.01.T01:CDS
GGATCACAGGCTCAGCCAAT+TGG 0.371980 8:+7160835 MsG0880042329.01.T01:CDS
GGCTGCAAAGTTGGATGCTC+TGG 0.375821 8:+7159456 MsG0880042329.01.T01:CDS
TTCGCATGTTTCTATTGTTA+AGG 0.377831 8:+7157595 MsG0880042329.01.T01:CDS
AGCAGACATGCCTGCCAAAT+AGG 0.378424 8:-7159514 None:intergenic
GACAGTTGGTGATGATAAAC+AGG 0.380827 8:+7160570 MsG0880042329.01.T01:CDS
TCTCAAATGGTTGGACCTAA+TGG 0.387463 8:+7161054 MsG0880042329.01.T01:CDS
TTCAAATGATAACAACATAA+TGG 0.387934 8:+7160349 MsG0880042329.01.T01:CDS
AATACTCTTGGCGGCATGTT+GGG 0.388870 8:+7160814 MsG0880042329.01.T01:CDS
AACAGGCGGATACAAGGGTT+TGG 0.393082 8:+7158989 MsG0880042329.01.T01:CDS
TGGTGCAATGGGAACTATAT+TGG 0.395615 8:+7160957 MsG0880042329.01.T01:CDS
AAATATGCAGTTGGAAAGTC+TGG 0.396685 8:+7158764 MsG0880042329.01.T01:CDS
ATTAGTGAGGTAGTTGGTAT+TGG 0.403145 8:+7159055 MsG0880042329.01.T01:CDS
ATAAAAGACTTGATATCTTC+AGG 0.404076 8:-7159034 None:intergenic
TAGAAAGTCCAAAACTACTT+TGG 0.405688 8:-7159246 None:intergenic
TAAACCTGAAAATAAAGATT+CGG 0.406954 8:-7160770 None:intergenic
GGATTTACATTGAACCCAAT+TGG 0.409176 8:-7160850 None:intergenic
GATCGATTTGCAAGAAAGAA+TGG 0.411962 8:+7157451 MsG0880042329.01.T01:exon
CCCATTATGATTTCCTTGCT+TGG 0.418127 8:-7160662 None:intergenic
TATTTAAGGTGTTGCAGTGT+TGG 0.422973 8:+7161677 MsG0880042329.01.T01:three_prime_UTR
ACAGGCGGATACAAGGGTTT+GGG 0.427876 8:+7158990 MsG0880042329.01.T01:CDS
CCTCTTAATTATGGTGCAAT+GGG 0.428642 8:+7160946 MsG0880042329.01.T01:CDS
TTGCATCGGCTCGCGATTCA+AGG 0.435794 8:+7161614 MsG0880042329.01.T01:CDS
AAGGTCGTTGACCGTTGAAT+CGG 0.436617 8:+7159177 MsG0880042329.01.T01:CDS
ATCATCCTTCTTTCTGAGGA+TGG 0.445895 8:-7159992 None:intergenic
CCAAGCAAGGAAATCATAAT+GGG 0.448142 8:+7160662 MsG0880042329.01.T01:CDS
TCTAACAGAGGCTGCAAAGT+TGG 0.449187 8:+7159447 MsG0880042329.01.T01:CDS
GAGAGGAACGATTTCGTGGC+AGG 0.449373 8:-7157289 None:intergenic
GGCTGTGCGGGAAACTGCTC+AGG 0.452434 8:+7158889 MsG0880042329.01.T01:CDS
CTCGAGACAATTGTAACTTC+AGG 0.454370 8:+7159382 MsG0880042329.01.T01:CDS
CTGCATTTCTCTTCTGAACT+CGG 0.455673 8:-7158789 None:intergenic
TGGCGGCATGTTGGGATCAC+AGG 0.456152 8:+7160822 MsG0880042329.01.T01:CDS
ACCTCTTAATTATGGTGCAA+TGG 0.458838 8:+7160945 MsG0880042329.01.T01:CDS
GAATTAATAGAAGAACTGTT+TGG 0.459583 8:-7160260 None:intergenic
GATTCAATTCAATCTTGAAT+CGG 0.466505 8:+7157365 MsG0880042329.01.T01:five_prime_UTR
AAAAGCTTGAATGGCATCTC+GGG 0.469453 8:-7159425 None:intergenic
GATCACAGGCTCAGCCAATT+GGG 0.469890 8:+7160836 MsG0880042329.01.T01:CDS
TTGGCTGGTCTCCACCTAGA+AGG 0.471651 8:-7160241 None:intergenic
CCAAGCCTCCTTGAGAGAAA+AGG 0.473982 8:+7160086 MsG0880042329.01.T01:CDS
CTTGACAATAATACTCTTGG+CGG 0.475734 8:+7160805 MsG0880042329.01.T01:CDS
CTCTGTTAGAAAAGCTTGAA+TGG 0.476972 8:-7159434 None:intergenic
AACTGCTCAGGAGGCTGTCT+CGG 0.479913 8:+7158901 MsG0880042329.01.T01:CDS
TAATACTCTTGGCGGCATGT+TGG 0.483188 8:+7160813 MsG0880042329.01.T01:CDS
TGAATTGTTGATGATTGAGC+TGG 0.484461 8:-7161127 None:intergenic
GGGTCTGTTAGTGATTTAAT+GGG 0.486835 8:+7160682 MsG0880042329.01.T01:CDS
ATACCAGGCGGCATATTGTA+TGG 0.491713 8:-7160895 None:intergenic
GATCTTAACAGGCGGATACA+AGG 0.491995 8:+7158983 MsG0880042329.01.T01:CDS
AGATTAAGACTAGAGAAGAT+AGG 0.492419 8:+7159356 MsG0880042329.01.T01:CDS
TGGCATCTCGGGAGGGCTGT+AGG 0.496073 8:-7159414 None:intergenic
AGATGGCGGTGTTTCTCAAA+TGG 0.499065 8:+7161041 MsG0880042329.01.T01:CDS
ACCCTTGACAATAATACTCT+TGG 0.499310 8:+7160802 MsG0880042329.01.T01:CDS
TCTCTAATGAAGAATGAAAC+CGG 0.500352 8:+7159124 MsG0880042329.01.T01:CDS
ATGCCTGCCAAATAGGAGAT+TGG 0.502337 8:-7159507 None:intergenic
AATCTCTGAAGAATTTCCAC+TGG 0.505372 8:-7159338 None:intergenic
AATAAGATGGAAATTTCAAA+TGG 0.506237 8:+7159310 MsG0880042329.01.T01:CDS
TAATAGAAGAACTGTTTGGC+TGG 0.507822 8:-7160256 None:intergenic
GCTGAAATATGTCTGGCAAA+GGG 0.507941 8:-7161083 None:intergenic
GGCGGTGTTTCTCAAATGGT+TGG 0.508431 8:+7161045 MsG0880042329.01.T01:CDS
ACTGTGGATGATGTTCCCTT+CGG 0.509917 8:-7160742 None:intergenic
TCCCTTCGGCTTCGTACTTG+AGG 0.511023 8:-7160728 None:intergenic
GGCAAAGGGGAAGCACCATT+AGG 0.514137 8:-7161069 None:intergenic
GAAGAGCGGTGGAATCGTAC+TGG 0.517955 8:+7157483 MsG0880042329.01.T01:CDS
TGCACTAAATAAGGCTGTGC+GGG 0.518038 8:+7158877 MsG0880042329.01.T01:CDS
TAGCCAGTGTCTATCAAGTC+GGG 0.525018 8:-7160326 None:intergenic
GAAAAGCTTGAATGGCATCT+CGG 0.525926 8:-7159426 None:intergenic
CGCCAAGAGTATTATTGTCA+AGG 0.526766 8:-7160804 None:intergenic
AAATTTGGCTGAAATATGTC+TGG 0.528584 8:-7161090 None:intergenic
GATCATCATCCTTCTTTCTG+AGG 0.528830 8:-7159996 None:intergenic
GGCTGAAATATGTCTGGCAA+AGG 0.530719 8:-7161084 None:intergenic
TTGCTCTTCCACACATGCAA+TGG 0.530928 8:-7162001 None:intergenic
ATGAAGAATGAAACCGGAAG+TGG 0.532405 8:+7159130 MsG0880042329.01.T01:CDS
GCTCCAATCTCCTATTTGGC+AGG 0.535438 8:+7159504 MsG0880042329.01.T01:CDS
TGAGTCCATCCTCAGAAAGA+AGG 0.535906 8:+7159987 MsG0880042329.01.T01:CDS
GGCAGGGAAAATTATGATGA+AGG 0.540448 8:-7157272 None:intergenic
AGATTGATAAAATATGCAGT+TGG 0.544306 8:+7158755 MsG0880042329.01.T01:CDS
TTTAGTGCATCACCTTTCAA+AGG 0.546509 8:-7158863 None:intergenic
ATTGCACCACAAGGGACAGT+TGG 0.548112 8:+7158838 MsG0880042329.01.T01:CDS
TGTTGACATTACTAATGTGT+TGG 0.550466 8:-7161014 None:intergenic
AAGTGAGAGGAACGATTTCG+TGG 0.551867 8:-7157293 None:intergenic
GACTTGATATCTTCAGGTGG+CGG 0.554154 8:-7159028 None:intergenic
GATCATGAGAGTCGCAAGCA+AGG 0.554809 8:+7160595 MsG0880042329.01.T01:CDS
ATGCCATACAATATGCCGCC+TGG 0.556414 8:+7160892 MsG0880042329.01.T01:CDS
CAGGTTCTTGGCCTTCTAGG+TGG 0.559644 8:+7160230 MsG0880042329.01.T01:intron
AGCATGAAGCAACTACACTA+AGG 0.560172 8:-7162030 None:intergenic
TGGAAGAGAGAGAAAGTGAG+AGG 0.561178 8:-7157306 None:intergenic
AACGAGAAACACTTCGGACA+TGG 0.563147 8:+7161758 MsG0880042329.01.T01:three_prime_UTR
ACCACCACGTTCCGATTCAA+CGG 0.563348 8:-7159188 None:intergenic
ATCTTAACAGGCGGATACAA+GGG 0.564539 8:+7158984 MsG0880042329.01.T01:CDS
GGATTCAAGAGTAAATAAGA+TGG 0.564585 8:+7159297 MsG0880042329.01.T01:CDS
TTTGGTTCCAGTTCCAAGCA+AGG 0.564848 8:+7160649 MsG0880042329.01.T01:CDS
AGCTTGAATGGCATCTCGGG+AGG 0.567375 8:-7159422 None:intergenic
GGACAGTTGGATCCTTTGAA+AGG 0.570751 8:+7158851 MsG0880042329.01.T01:CDS
ATTTGTCTCCATTGCATGTG+TGG 0.572786 8:+7161993 MsG0880042329.01.T01:three_prime_UTR
ATATGACCGGTGGGAAACAT+TGG 0.575655 8:-7160871 None:intergenic
TGTGCGGGAAACTGCTCAGG+AGG 0.579718 8:+7158892 MsG0880042329.01.T01:CDS
CAGTGTCTATCAAGTCGGGC+AGG 0.585797 8:-7160322 None:intergenic
AATCGCGAGCCGATGCAAGA+TGG 0.590029 8:-7161609 None:intergenic
GAATTGTTGATGATTGAGCT+GGG 0.590504 8:-7161126 None:intergenic
ACAAGAGTCCAAATCTTCAA+AGG 0.595366 8:+7159158 MsG0880042329.01.T01:CDS
TACCTCAAGTACGAAGCCGA+AGG 0.597564 8:+7160726 MsG0880042329.01.T01:CDS
TCTGTTAGTGATTTAATGGG+TGG 0.600236 8:+7160685 MsG0880042329.01.T01:CDS
CTGAAATATGTCTGGCAAAG+GGG 0.601936 8:-7161082 None:intergenic
ATCATGAGAGTCGCAAGCAA+GGG 0.602452 8:+7160596 MsG0880042329.01.T01:CDS
GCCAAGAGTATTATTGTCAA+GGG 0.604765 8:-7160803 None:intergenic
CTTGTAGGACCATCTTGCAT+CGG 0.605334 8:+7161600 MsG0880042329.01.T01:intron
AGAGGAACGATTTCGTGGCA+GGG 0.606290 8:-7157288 None:intergenic
AGTAATGTCAACATGCGAGA+TGG 0.606843 8:+7161024 MsG0880042329.01.T01:CDS
ATTTCAAATGGTGAATCCAG+TGG 0.608307 8:+7159322 MsG0880042329.01.T01:CDS
CATATTGTATGGCATATGAC+CGG 0.609384 8:-7160884 None:intergenic
GGTTGATTCAACATAATACC+AGG 0.609636 8:-7160910 None:intergenic
CCATAATTAAGAGGTTGAGT+AGG 0.613287 8:-7160937 None:intergenic
GAGTCCCATTGTAAAACAGA+AGG 0.613897 8:+7157655 MsG0880042329.01.T01:CDS
GCTTGAATGGCATCTCGGGA+GGG 0.617072 8:-7159421 None:intergenic
ATAGCCAGTGTCTATCAAGT+CGG 0.617941 8:-7160327 None:intergenic
ACCTCAAGTACGAAGCCGAA+GGG 0.618757 8:+7160727 MsG0880042329.01.T01:CDS
TGAGAGCAAAGAACATGCAG+AGG 0.619584 8:+7160531 MsG0880042329.01.T01:CDS
ATTGTATGGCATATGACCGG+TGG 0.620133 8:-7160881 None:intergenic
ATCTTGAGAAGGTGCAGCAG+CGG 0.624293 8:-7158963 None:intergenic
GGAAGTGCATCAATTAAGCA+AGG 0.624631 8:+7159076 MsG0880042329.01.T01:CDS
TAATAAAACGAGAAACACTT+CGG 0.625318 8:+7161752 MsG0880042329.01.T01:three_prime_UTR
TTGTATGGCATATGACCGGT+GGG 0.627046 8:-7160880 None:intergenic
GCAGCAGTTACTTGCTACAA+TGG 0.629849 8:+7160984 MsG0880042329.01.T01:CDS
TGGAATCGTACTGGAGATCA+CGG 0.634918 8:+7157492 MsG0880042329.01.T01:CDS
CTTTCTAAGAATCAGTCTAG+TGG 0.635112 8:+7159262 MsG0880042329.01.T01:CDS
TCGTCAATTATTGCACCACA+AGG 0.644502 8:+7158829 MsG0880042329.01.T01:CDS
AATGTCAACATGCGAGATGG+CGG 0.648206 8:+7161027 MsG0880042329.01.T01:CDS
CTTCATTGAAAACAAAGACG+TGG 0.650139 8:+7160041 MsG0880042329.01.T01:CDS
GTAAATCCAATGTTTCCCAC+CGG 0.653975 8:+7160865 MsG0880042329.01.T01:CDS
CTGCCCGACTTGATAGACAC+TGG 0.657103 8:+7160323 MsG0880042329.01.T01:CDS
GAGACAATTGTAACTTCAGG+AGG 0.657326 8:+7159385 MsG0880042329.01.T01:CDS
GGAAACGAGTAGAAGAGCGG+TGG 0.663822 8:+7157472 MsG0880042329.01.T01:CDS
CGCCTGTTAAGATCTTGAGA+AGG 0.663870 8:-7158974 None:intergenic
TTGACCGTTGAATCGGAACG+TGG 0.670789 8:+7159184 MsG0880042329.01.T01:CDS
TCAACTCTTAACTACTGACG+TGG 0.671498 8:+7157239 MsG0880042329.01.T01:five_prime_UTR
AAGGATCCAACTGTCCCTTG+TGG 0.677764 8:-7158844 None:intergenic
CGTCAATTATTGCACCACAA+GGG 0.678468 8:+7158830 MsG0880042329.01.T01:CDS
AGAAATGCAGAGACATTCAG+TGG 0.683795 8:+7158802 MsG0880042329.01.T01:CDS
CTTCTCAAGATCTTAACAGG+CGG 0.687520 8:+7158975 MsG0880042329.01.T01:CDS
AAAGACTTGATATCTTCAGG+TGG 0.688757 8:-7159031 None:intergenic
ATGCACTAAATAAGGCTGTG+CGG 0.693818 8:+7158876 MsG0880042329.01.T01:CDS
TAAAGATTCGGATTGCACTG+TGG 0.702259 8:-7160758 None:intergenic
GGACTTCATAGCTTAACACA+AGG 0.714787 8:+7159097 MsG0880042329.01.T01:CDS
ACCGTTGAATCGGAACGTGG+TGG 0.725678 8:+7159187 MsG0880042329.01.T01:CDS
AATGGAAACGAGTAGAAGAG+CGG 0.735214 8:+7157469 MsG0880042329.01.T01:exon
TGATTCAACATAATACCAGG+CGG 0.751300 8:-7160907 None:intergenic
ACAGTTGGTGATGATAAACA+GGG 0.818749 8:+7160571 MsG0880042329.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTAATTCAAACTTTAAA+CGG - Chr8:7158457-7158476 None:intergenic 10.0%
!!! ATGTATTATACTTTATTTTT+TGG + Chr8:7157901-7157920 MsG0880042329.01.T01:intron 10.0%
!! AATTTATATCAAACTTCAAA+AGG - Chr8:7158519-7158538 None:intergenic 15.0%
!! ATTAATAAGTTGCAAATATT+AGG - Chr8:7161314-7161333 None:intergenic 15.0%
!! ATTTAATTCAAACTTTAAAC+GGG - Chr8:7158456-7158475 None:intergenic 15.0%
!! ATTTATATCAAACTTCAAAA+GGG - Chr8:7158518-7158537 None:intergenic 15.0%
!! GAAAAAGAACAAAAAAAAAA+CGG - Chr8:7157694-7157713 None:intergenic 15.0%
!! TGATATGATTTATGAATAAA+GGG + Chr8:7158631-7158650 MsG0880042329.01.T01:intron 15.0%
!! TTAATAAGTTGCAAATATTA+GGG - Chr8:7161313-7161332 None:intergenic 15.0%
!! TTGATATGATTTATGAATAA+AGG + Chr8:7158630-7158649 MsG0880042329.01.T01:intron 15.0%
!!! AATTTCTTCTAATTTGTAAA+CGG - Chr8:7157558-7157577 None:intergenic 15.0%
!!! ATTATACTTTATTTTTTGGT+GGG + Chr8:7157905-7157924 MsG0880042329.01.T01:intron 15.0%
!!! TATTATACTTTATTTTTTGG+TGG + Chr8:7157904-7157923 MsG0880042329.01.T01:intron 15.0%
!!! TTTGAGAAAATTATTTTCAT+GGG + Chr8:7161874-7161893 MsG0880042329.01.T01:three_prime_UTR 15.0%
!!! TTTTGAGAAAATTATTTTCA+TGG + Chr8:7161873-7161892 MsG0880042329.01.T01:three_prime_UTR 15.0%
!!! TTTTTTTTTTGTTCTTTTTC+TGG + Chr8:7157694-7157713 MsG0880042329.01.T01:intron 15.0%
!! AATAAGATGGAAATTTCAAA+TGG + Chr8:7159310-7159329 MsG0880042329.01.T01:CDS 20.0%
!! ATATAGATCTTATTCTTATC+TGG + Chr8:7157748-7157767 MsG0880042329.01.T01:intron 20.0%
!! GAATACGTTTCTTTAAATTA+GGG + Chr8:7157414-7157433 MsG0880042329.01.T01:five_prime_UTR 20.0%
!! GATACTCGATAAAATAATAA+AGG + Chr8:7161397-7161416 MsG0880042329.01.T01:intron 20.0%
!! GTGAAATTATTAGTAGTATT+GGG + Chr8:7157794-7157813 MsG0880042329.01.T01:intron 20.0%
!! TAAACCTGAAAATAAAGATT+CGG - Chr8:7160773-7160792 None:intergenic 20.0%
!! TATAGATCTTATTCTTATCT+GGG + Chr8:7157749-7157768 MsG0880042329.01.T01:intron 20.0%
!! TGAATACGTTTCTTTAAATT+AGG + Chr8:7157413-7157432 MsG0880042329.01.T01:five_prime_UTR 20.0%
!! TGTGAAATTATTAGTAGTAT+TGG + Chr8:7157793-7157812 MsG0880042329.01.T01:intron 20.0%
!! TTCAAATGATAACAACATAA+TGG + Chr8:7160349-7160368 MsG0880042329.01.T01:CDS 20.0%
!!! AAGTATTCTGGAATATAATA+TGG + Chr8:7159651-7159670 MsG0880042329.01.T01:intron 20.0%
!!! AATAACCAAATTTACGTTTT+GGG + Chr8:7159897-7159916 MsG0880042329.01.T01:intron 20.0%
!!! AATTAGGGTTTTTAATTTGT+TGG + Chr8:7157429-7157448 MsG0880042329.01.T01:five_prime_UTR 20.0%
!!! ATTTCTTCTAATTTGTAAAC+GGG - Chr8:7157557-7157576 None:intergenic 20.0%
!!! ATTTCTTTTTTCAAGTATTC+TGG + Chr8:7159639-7159658 MsG0880042329.01.T01:intron 20.0%
!!! CTTGATAACAAATATAAGTA+TGG - Chr8:7158592-7158611 None:intergenic 20.0%
!!! TAAAGCATTTGATTTTATCT+CGG + Chr8:7161167-7161186 MsG0880042329.01.T01:CDS 20.0%
!!! TTTTTTGGTGAAAATATTGT+TGG + Chr8:7158723-7158742 MsG0880042329.01.T01:intron 20.0%
! AATTGAATCGAATGAGATTT+GGG - Chr8:7157354-7157373 None:intergenic 25.0%
! AGATTGATAAAATATGCAGT+TGG + Chr8:7158755-7158774 MsG0880042329.01.T01:CDS 25.0%
! ATAAAAGACTTGATATCTTC+AGG - Chr8:7159037-7159056 None:intergenic 25.0%
! CAGGTAAATACTATGTATAT+TGG + Chr8:7159820-7159839 MsG0880042329.01.T01:intron 25.0%
! CCAAATTATTAAGAAGAATG+TGG + Chr8:7161351-7161370 MsG0880042329.01.T01:intron 25.0%
! CCACATTCTTCTTAATAATT+TGG - Chr8:7161354-7161373 None:intergenic 25.0%
! GAATTAATAGAAGAACTGTT+TGG - Chr8:7160263-7160282 None:intergenic 25.0%
! GATTCAATTCAATCTTGAAT+CGG + Chr8:7157365-7157384 MsG0880042329.01.T01:five_prime_UTR 25.0%
! GATTTATTTGGAGATATAAG+TGG + Chr8:7160439-7160458 MsG0880042329.01.T01:intron 25.0%
! TAAAACCCAAAACGTAAATT+TGG - Chr8:7159905-7159924 None:intergenic 25.0%
! TAATAAAACGAGAAACACTT+CGG + Chr8:7161752-7161771 MsG0880042329.01.T01:three_prime_UTR 25.0%
! TGGAGACAAATACAAATAAA+AGG - Chr8:7161984-7162003 None:intergenic 25.0%
! TTATGAATAAAGGGTCTTAA+TGG + Chr8:7158640-7158659 MsG0880042329.01.T01:intron 25.0%
! TTCAAGATATCATCAAATTG+AGG - Chr8:7158403-7158422 None:intergenic 25.0%
!! AATGAGATTTGGGAATTTTT+GGG - Chr8:7157344-7157363 None:intergenic 25.0%
!! AGAGATGAATGAAATGTTTT+AGG + Chr8:7161461-7161480 MsG0880042329.01.T01:intron 25.0%
!! CAATAACCAAATTTACGTTT+TGG + Chr8:7159896-7159915 MsG0880042329.01.T01:intron 25.0%
!! TATCAAGTCTTTTATTAGTG+AGG + Chr8:7159042-7159061 MsG0880042329.01.T01:CDS 25.0%
!! TTATTGAGAGTTAAGTTTTC+AGG + Chr8:7159939-7159958 MsG0880042329.01.T01:intron 25.0%
!!! AAACTTGTTTTGCTCTTTTT+TGG + Chr8:7158708-7158727 MsG0880042329.01.T01:intron 25.0%
!!! AGTACTGATGAACAAATATA+GGG + Chr8:7160386-7160405 MsG0880042329.01.T01:intron 25.0%
!!! ATCTCGAATGATTTTTTCTT+TGG + Chr8:7157995-7158014 MsG0880042329.01.T01:intron 25.0%
!!! GTTTTATTACGTTGTTAACA+TGG - Chr8:7161741-7161760 None:intergenic 25.0%
!!! TAGTACTGATGAACAAATAT+AGG + Chr8:7160385-7160404 MsG0880042329.01.T01:intron 25.0%
!!! TATTCTGGAATATAATATGG+TGG + Chr8:7159654-7159673 MsG0880042329.01.T01:intron 25.0%
!!! TGATTTTGTTTTGAAACGTT+TGG + Chr8:7157625-7157644 MsG0880042329.01.T01:CDS 25.0%
!!! TTTTTGGAATCAACTTTATG+AGG + Chr8:7157877-7157896 MsG0880042329.01.T01:intron 25.0%
AAATTTGGCTGAAATATGTC+TGG - Chr8:7161093-7161112 None:intergenic 30.0%
AATTAGATGATAGCATGCAT+AGG + Chr8:7157825-7157844 MsG0880042329.01.T01:intron 30.0%
ACATTGTCAATATGCATTTG+AGG - Chr8:7159719-7159738 None:intergenic 30.0%
AGATTAAGACTAGAGAAGAT+AGG + Chr8:7159356-7159375 MsG0880042329.01.T01:CDS 30.0%
ATCATATCACATTTGATCCA+AGG + Chr8:7158319-7158338 MsG0880042329.01.T01:intron 30.0%
ATTCATCCAGATTGACTATA+AGG - Chr8:7160124-7160143 None:intergenic 30.0%
ATTTGCATAGTTCATTGCAA+TGG + Chr8:7158485-7158504 MsG0880042329.01.T01:intron 30.0%
ATTTGCATAGTTCATTGCAT+TGG + Chr8:7158547-7158566 MsG0880042329.01.T01:intron 30.0%
CCAAATAGATCAAAAAGTTG+AGG - Chr8:7160634-7160653 None:intergenic 30.0%
GAAATGATACATCAGCAAAT+GGG - Chr8:7160504-7160523 None:intergenic 30.0%
GAATTGAATCGAATGAGATT+TGG - Chr8:7157355-7157374 None:intergenic 30.0%
GGATTCAAGAGTAAATAAGA+TGG + Chr8:7159297-7159316 MsG0880042329.01.T01:CDS 30.0%
TAGAAAGTCCAAAACTACTT+TGG - Chr8:7159249-7159268 None:intergenic 30.0%
TCAGAGACTATTATATTCAG+AGG + Chr8:7158208-7158227 MsG0880042329.01.T01:intron 30.0%
TCATATCACATTTGATCCAA+GGG + Chr8:7158320-7158339 MsG0880042329.01.T01:intron 30.0%
TCTCTAATGAAGAATGAAAC+CGG + Chr8:7159124-7159143 MsG0880042329.01.T01:CDS 30.0%
TGAAATGATACATCAGCAAA+TGG - Chr8:7160505-7160524 None:intergenic 30.0%
TGTTATCAAGCAGTAATGTT+TGG + Chr8:7158602-7158621 MsG0880042329.01.T01:intron 30.0%
TGTTGACATTACTAATGTGT+TGG - Chr8:7161017-7161036 None:intergenic 30.0%
! AACTGTTTTCATACCAGAAA+AGG - Chr8:7159693-7159712 None:intergenic 30.0%
! ACTGTTTTCATACCAGAAAA+GGG - Chr8:7159692-7159711 None:intergenic 30.0%
! AGTGAAAACCAAAGTAGTTT+TGG + Chr8:7159238-7159257 MsG0880042329.01.T01:CDS 30.0%
! ATAAAGGGTCTTAATGGTTT+TGG + Chr8:7158646-7158665 MsG0880042329.01.T01:intron 30.0%
! ATGAGATTTGGGAATTTTTG+GGG - Chr8:7157343-7157362 None:intergenic 30.0%
! CCTCAACTTTTTGATCTATT+TGG + Chr8:7160631-7160650 MsG0880042329.01.T01:CDS 30.0%
! CTGATTGGTACAATTTTTGT+CGG - Chr8:7157960-7157979 None:intergenic 30.0%
! GAATGAGATTTGGGAATTTT+TGG - Chr8:7157345-7157364 None:intergenic 30.0%
! GCTTTTGTTGAGGATATTTA+AGG + Chr8:7161663-7161682 MsG0880042329.01.T01:three_prime_UTR 30.0%
! TAGATTTTGTGCTTTTGTTG+AGG + Chr8:7161653-7161672 MsG0880042329.01.T01:three_prime_UTR 30.0%
! TCACTTTGTTTCATACTTGT+AGG + Chr8:7161585-7161604 MsG0880042329.01.T01:intron 30.0%
! TCTTTTATTAGTGAGGTAGT+TGG + Chr8:7159049-7159068 MsG0880042329.01.T01:CDS 30.0%
! TGTACCTTCTGTTTTACAAT+GGG - Chr8:7157662-7157681 None:intergenic 30.0%
! TTCGCATGTTTCTATTGTTA+AGG + Chr8:7157595-7157614 MsG0880042329.01.T01:CDS 30.0%
! TTGTACCTTCTGTTTTACAA+TGG - Chr8:7157663-7157682 None:intergenic 30.0%
!! ACAAGTTTGTTTTCTACGAT+TGG + Chr8:7158283-7158302 MsG0880042329.01.T01:intron 30.0%
!! ATATAATAGTCTCTGAAGCA+CGG - Chr8:7158204-7158223 None:intergenic 30.0%
!! GATGAATGAAATGTTTTAGG+TGG + Chr8:7161464-7161483 MsG0880042329.01.T01:intron 30.0%
!! GCTATTTTCTTCTGAGAAAA+TGG - Chr8:7158927-7158946 None:intergenic 30.0%
!! TGATGATCATTTTTCACATG+TGG + Chr8:7160011-7160030 MsG0880042329.01.T01:CDS 30.0%
!!! ATGCAGTGGTTTTGAATTTT+TGG + Chr8:7157861-7157880 MsG0880042329.01.T01:intron 30.0%
!!! CAATCCGAATCTTTATTTTC+AGG + Chr8:7160766-7160785 MsG0880042329.01.T01:CDS 30.0%
!!! TCGAATGATTTTTTCTTTGG+TGG + Chr8:7157998-7158017 MsG0880042329.01.T01:intron 30.0%
AAAGACTTGATATCTTCAGG+TGG - Chr8:7159034-7159053 None:intergenic 35.0%
AAATATGCAGTTGGAAAGTC+TGG + Chr8:7158764-7158783 MsG0880042329.01.T01:CDS 35.0%
AAATGTCTCTGTGAACATAC+AGG + Chr8:7159801-7159820 MsG0880042329.01.T01:intron 35.0%
ACAAGAGTCCAAATCTTCAA+AGG + Chr8:7159158-7159177 MsG0880042329.01.T01:CDS 35.0%
ACCCTTGACAATAATACTCT+TGG + Chr8:7160802-7160821 MsG0880042329.01.T01:CDS 35.0%
ACCTCTTAATTATGGTGCAA+TGG + Chr8:7160945-7160964 MsG0880042329.01.T01:CDS 35.0%
AGAAAGTAAAAGAACCAGCA+AGG - Chr8:7158111-7158130 None:intergenic 35.0%
AGGTAACCTTATAGTCAATC+TGG + Chr8:7160115-7160134 MsG0880042329.01.T01:intron 35.0%
ATTTCAAATGGTGAATCCAG+TGG + Chr8:7159322-7159341 MsG0880042329.01.T01:CDS 35.0%
CATATTGTATGGCATATGAC+CGG - Chr8:7160887-7160906 None:intergenic 35.0%
CCAAGCAAGGAAATCATAAT+GGG + Chr8:7160662-7160681 MsG0880042329.01.T01:CDS 35.0%
CCATAATTAAGAGGTTGAGT+AGG - Chr8:7160940-7160959 None:intergenic 35.0%
CCCCTTAAATTATTAGACCT+CGG + Chr8:7159772-7159791 MsG0880042329.01.T01:intron 35.0%
CCGAGGTCTAATAATTTAAG+GGG - Chr8:7159775-7159794 None:intergenic 35.0%
CCTACTCAACCTCTTAATTA+TGG + Chr8:7160937-7160956 MsG0880042329.01.T01:CDS 35.0%
CCTCTTAATTATGGTGCAAT+GGG + Chr8:7160946-7160965 MsG0880042329.01.T01:CDS 35.0%
CGACAAAAATTGTACCAATC+AGG + Chr8:7157958-7157977 MsG0880042329.01.T01:intron 35.0%
CTCTGTTAGAAAAGCTTGAA+TGG - Chr8:7159437-7159456 None:intergenic 35.0%
CTTCATTGAAAACAAAGACG+TGG + Chr8:7160041-7160060 MsG0880042329.01.T01:CDS 35.0%
CTTGACAATAATACTCTTGG+CGG + Chr8:7160805-7160824 MsG0880042329.01.T01:CDS 35.0%
CTTGAGAGAAAAGGCTATAA+AGG + Chr8:7160095-7160114 MsG0880042329.01.T01:CDS 35.0%
GAAAGGTGATGCACTAAATA+AGG + Chr8:7158868-7158887 MsG0880042329.01.T01:CDS 35.0%
GCCGAGGTCTAATAATTTAA+GGG - Chr8:7159776-7159795 None:intergenic 35.0%
GGAGATATAAGTGGATCTAT+TGG + Chr8:7160448-7160467 MsG0880042329.01.T01:intron 35.0%
GGATTTACATTGAACCCAAT+TGG - Chr8:7160853-7160872 None:intergenic 35.0%
GGGTCTGTTAGTGATTTAAT+GGG + Chr8:7160682-7160701 MsG0880042329.01.T01:CDS 35.0%
GTAGAAAACAAACTTGTGCA+TGG - Chr8:7158280-7158299 None:intergenic 35.0%
GTTGAATGAAAGATATGCAG+TGG + Chr8:7157847-7157866 MsG0880042329.01.T01:intron 35.0%
TAAAGCTCCAATCTCCTATT+TGG + Chr8:7159500-7159519 MsG0880042329.01.T01:CDS 35.0%
TAATAGAAGAACTGTTTGGC+TGG - Chr8:7160259-7160278 None:intergenic 35.0%
TATCAAGCAGTAATGTTTGG+AGG + Chr8:7158605-7158624 MsG0880042329.01.T01:intron 35.0%
TCAAATTGAGGCCAATTCTA+TGG - Chr8:7158391-7158410 None:intergenic 35.0%
TCCAAGCAAGGAAATCATAA+TGG + Chr8:7160661-7160680 MsG0880042329.01.T01:CDS 35.0%
TCTGTTAGTGATTTAATGGG+TGG + Chr8:7160685-7160704 MsG0880042329.01.T01:CDS 35.0%
TGATTCAACATAATACCAGG+CGG - Chr8:7160910-7160929 None:intergenic 35.0%
TGGGTCTGTTAGTGATTTAA+TGG + Chr8:7160681-7160700 MsG0880042329.01.T01:CDS 35.0%
TTAAGAGGTTGAGTAGGATA+TGG - Chr8:7160934-7160953 None:intergenic 35.0%
TTACTATTATCTGCGTTGCA+CGG + Chr8:7158131-7158150 MsG0880042329.01.T01:intron 35.0%
TTGGTGAAAATATTGTTGGC+AGG + Chr8:7158727-7158746 MsG0880042329.01.T01:intron 35.0%
TTTAGTGCATCACCTTTCAA+AGG - Chr8:7158866-7158885 None:intergenic 35.0%
! AACTTTACATGACCCTTTTC+TGG + Chr8:7159677-7159696 MsG0880042329.01.T01:intron 35.0%
! AATCTCTGAAGAATTTCCAC+TGG - Chr8:7159341-7159360 None:intergenic 35.0%
! ATGCAGAGGATCTATTTTCA+GGG + Chr8:7160545-7160564 MsG0880042329.01.T01:CDS 35.0%
! ATTAGTGAGGTAGTTGGTAT+TGG + Chr8:7159055-7159074 MsG0880042329.01.T01:CDS 35.0%
! CATTCAAGCTTTTCTAACAG+AGG + Chr8:7159435-7159454 MsG0880042329.01.T01:CDS 35.0%
! CTTTATAGCCTTTTCTCTCA+AGG - Chr8:7160097-7160116 None:intergenic 35.0%
! CTTTCTAAGAATCAGTCTAG+TGG + Chr8:7159262-7159281 MsG0880042329.01.T01:CDS 35.0%
! GGAGTTTGAGATGTCAAATT+TGG - Chr8:7161108-7161127 None:intergenic 35.0%
! GGTTGATTCAACATAATACC+AGG - Chr8:7160913-7160932 None:intergenic 35.0%
! TTTTCACTACGATATGCAAC+TGG - Chr8:7159226-7159245 None:intergenic 35.0%
!! ACAGTTGGTGATGATAAACA+GGG + Chr8:7160571-7160590 MsG0880042329.01.T01:CDS 35.0%
!! GAATTGTTGATGATTGAGCT+GGG - Chr8:7161129-7161148 None:intergenic 35.0%
!! GATCGATTTGCAAGAAAGAA+TGG + Chr8:7157451-7157470 MsG0880042329.01.T01:exon 35.0%
!! GCCAAGAGTATTATTGTCAA+GGG - Chr8:7160806-7160825 None:intergenic 35.0%
!! TATAATAGTCTCTGAAGCAC+GGG - Chr8:7158203-7158222 None:intergenic 35.0%
!! TATTTAAGGTGTTGCAGTGT+TGG + Chr8:7161677-7161696 MsG0880042329.01.T01:three_prime_UTR 35.0%
!! TGAATTGTTGATGATTGAGC+TGG - Chr8:7161130-7161149 None:intergenic 35.0%
!! TGAGATTTGGGAATTTTTGG+GGG - Chr8:7157342-7157361 None:intergenic 35.0%
!! TGCAGTTCTCATTGTTTTTC+TGG + Chr8:7161794-7161813 MsG0880042329.01.T01:three_prime_UTR 35.0%
!! TTTTTGGGGGAAGAAAGAAT+TGG - Chr8:7157329-7157348 None:intergenic 35.0%
!!! TTTTTTGGTGGGAAAGTGTT+TGG + Chr8:7157916-7157935 MsG0880042329.01.T01:intron 35.0%
AAAAGCTTGAATGGCATCTC+GGG - Chr8:7159428-7159447 None:intergenic 40.0%
AATGGAAACGAGTAGAAGAG+CGG + Chr8:7157469-7157488 MsG0880042329.01.T01:exon 40.0%
AGAAATGCAGAGACATTCAG+TGG + Chr8:7158802-7158821 MsG0880042329.01.T01:CDS 40.0%
AGAATCAGTCTAGTGGTTCT+TGG + Chr8:7159269-7159288 MsG0880042329.01.T01:CDS 40.0%
AGTAATGTCAACATGCGAGA+TGG + Chr8:7161024-7161043 MsG0880042329.01.T01:CDS 40.0%
ATAGCCAGTGTCTATCAAGT+CGG - Chr8:7160330-7160349 None:intergenic 40.0%
ATCTTAACAGGCGGATACAA+GGG + Chr8:7158984-7159003 MsG0880042329.01.T01:CDS 40.0%
ATGAAGAATGAAACCGGAAG+TGG + Chr8:7159130-7159149 MsG0880042329.01.T01:CDS 40.0%
ATGATTTCCTTGCTTGGAAC+TGG - Chr8:7160659-7160678 None:intergenic 40.0%
ATGCACTAAATAAGGCTGTG+CGG + Chr8:7158876-7158895 MsG0880042329.01.T01:CDS 40.0%
ATTTGTCTCCATTGCATGTG+TGG + Chr8:7161993-7162012 MsG0880042329.01.T01:three_prime_UTR 40.0%
CACCTTCTCAAGATCTTAAC+AGG + Chr8:7158972-7158991 MsG0880042329.01.T01:CDS 40.0%
CATGTGTGGAAGAGCAAAAA+AGG + Chr8:7162007-7162026 MsG0880042329.01.T01:three_prime_UTR 40.0%
CCAAATAAATCGTCAACCAG+AGG - Chr8:7160430-7160449 None:intergenic 40.0%
CCCATTATGATTTCCTTGCT+TGG - Chr8:7160665-7160684 None:intergenic 40.0%
CCCATTGCACCATAATTAAG+AGG - Chr8:7160949-7160968 None:intergenic 40.0%
CCTCTGGTTGACGATTTATT+TGG + Chr8:7160427-7160446 MsG0880042329.01.T01:intron 40.0%
CGCCGAGGTCTAATAATTTA+AGG - Chr8:7159777-7159796 None:intergenic 40.0%
CGTCAATTATTGCACCACAA+GGG + Chr8:7158830-7158849 MsG0880042329.01.T01:CDS 40.0%
CTCGAGACAATTGTAACTTC+AGG + Chr8:7159382-7159401 MsG0880042329.01.T01:CDS 40.0%
CTGAAATATGTCTGGCAAAG+GGG - Chr8:7161085-7161104 None:intergenic 40.0%
CTGCATTTCTCTTCTGAACT+CGG - Chr8:7158792-7158811 None:intergenic 40.0%
CTTCTCAAGATCTTAACAGG+CGG + Chr8:7158975-7158994 MsG0880042329.01.T01:CDS 40.0%
GAAAAGCTTGAATGGCATCT+CGG - Chr8:7159429-7159448 None:intergenic 40.0%
GAGACAATTGTAACTTCAGG+AGG + Chr8:7159385-7159404 MsG0880042329.01.T01:CDS 40.0%
GAGTCCCATTGTAAAACAGA+AGG + Chr8:7157655-7157674 MsG0880042329.01.T01:CDS 40.0%
GATCATCATCCTTCTTTCTG+AGG - Chr8:7159999-7160018 None:intergenic 40.0%
GCTGAAATATGTCTGGCAAA+GGG - Chr8:7161086-7161105 None:intergenic 40.0%
GCTGATGTATCATTTCACAC+AGG + Chr8:7160508-7160527 MsG0880042329.01.T01:intron 40.0%
GGACTTCATAGCTTAACACA+AGG + Chr8:7159097-7159116 MsG0880042329.01.T01:CDS 40.0%
GGCAGGGAAAATTATGATGA+AGG - Chr8:7157275-7157294 None:intergenic 40.0%
GTAAATCCAATGTTTCCCAC+CGG + Chr8:7160865-7160884 MsG0880042329.01.T01:CDS 40.0%
GTACCAATCAGGAATGAACT+CGG + Chr8:7157969-7157988 MsG0880042329.01.T01:intron 40.0%
GTCATCAACACATCAGTTTC+AGG - Chr8:7161491-7161510 None:intergenic 40.0%
TAAAGATTCGGATTGCACTG+TGG - Chr8:7160761-7160780 None:intergenic 40.0%
TACCAATCAGGAATGAACTC+GGG + Chr8:7157970-7157989 MsG0880042329.01.T01:intron 40.0%
TACGGGTACGTTTAGCAAAA+TGG + Chr8:7158173-7158192 MsG0880042329.01.T01:intron 40.0%
TACTATTATCTGCGTTGCAC+GGG + Chr8:7158132-7158151 MsG0880042329.01.T01:intron 40.0%
TATCACATTTGATCCAAGGG+TGG + Chr8:7158323-7158342 MsG0880042329.01.T01:intron 40.0%
TCAACTCTTAACTACTGACG+TGG + Chr8:7157239-7157258 MsG0880042329.01.T01:five_prime_UTR 40.0%
TCACTTGTGGACCATAGAAT+TGG + Chr8:7158377-7158396 MsG0880042329.01.T01:intron 40.0%
TCGTCAATTATTGCACCACA+AGG + Chr8:7158829-7158848 MsG0880042329.01.T01:CDS 40.0%
TCTCAAATGGTTGGACCTAA+TGG + Chr8:7161054-7161073 MsG0880042329.01.T01:CDS 40.0%
TGGTGCAATGGGAACTATAT+TGG + Chr8:7160957-7160976 MsG0880042329.01.T01:CDS 40.0%
! ATATTCAGAGGTGCACAAGA+TGG + Chr8:7158220-7158239 MsG0880042329.01.T01:intron 40.0%
! ATCATCCTTCTTTCTGAGGA+TGG - Chr8:7159995-7160014 None:intergenic 40.0%
! CATGCAGAGGATCTATTTTC+AGG + Chr8:7160544-7160563 MsG0880042329.01.T01:CDS 40.0%
! GGAAGTGCATCAATTAAGCA+AGG + Chr8:7159076-7159095 MsG0880042329.01.T01:CDS 40.0%
! GTCAACGACCTTTGAAGATT+TGG - Chr8:7159169-7159188 None:intergenic 40.0%
! TATAGCCTTTTCTCTCAAGG+AGG - Chr8:7160094-7160113 None:intergenic 40.0%
! TATTCAGAGGTGCACAAGAT+GGG + Chr8:7158221-7158240 MsG0880042329.01.T01:intron 40.0%
! TTTTCTGGATAGCATGTAGC+AGG + Chr8:7161809-7161828 MsG0880042329.01.T01:three_prime_UTR 40.0%
!! AAGCCTTATTCCACTAAGTG+GGG + Chr8:7161265-7161284 MsG0880042329.01.T01:intron 40.0%
!! CAAGCCTTATTCCACTAAGT+GGG + Chr8:7161264-7161283 MsG0880042329.01.T01:intron 40.0%
!! CGCCAAGAGTATTATTGTCA+AGG - Chr8:7160807-7160826 None:intergenic 40.0%
!! CTATTTTCAGGGATGACAGT+TGG + Chr8:7160556-7160575 MsG0880042329.01.T01:CDS 40.0%
!! CTGATGTGTTGATGACACAT+TGG + Chr8:7161495-7161514 MsG0880042329.01.T01:intron 40.0%
!! GACAGTTGGTGATGATAAAC+AGG + Chr8:7160570-7160589 MsG0880042329.01.T01:CDS 40.0%
!!! TTTTAGCTTAACTAGTGCCC+CGG - Chr8:7161441-7161460 None:intergenic 40.0%
AACCCGAGTTCATTCCTGAT+TGG - Chr8:7157975-7157994 None:intergenic 45.0%
AACGAGAAACACTTCGGACA+TGG + Chr8:7161758-7161777 MsG0880042329.01.T01:three_prime_UTR 45.0%
AAGGTCGTTGACCGTTGAAT+CGG + Chr8:7159177-7159196 MsG0880042329.01.T01:CDS 45.0%
AAGTGAGAGGAACGATTTCG+TGG - Chr8:7157296-7157315 None:intergenic 45.0%
AATACTCTTGGCGGCATGTT+GGG + Chr8:7160814-7160833 MsG0880042329.01.T01:CDS 45.0%
AATGTCAACATGCGAGATGG+CGG + Chr8:7161027-7161046 MsG0880042329.01.T01:CDS 45.0%
ACTCTTGTAGCTTCCACTTC+CGG - Chr8:7159146-7159165 None:intergenic 45.0%
ACTGTGGATGATGTTCCCTT+CGG - Chr8:7160745-7160764 None:intergenic 45.0%
ATACCAGGCGGCATATTGTA+TGG - Chr8:7160898-7160917 None:intergenic 45.0%
ATATGACCGGTGGGAAACAT+TGG - Chr8:7160874-7160893 None:intergenic 45.0%
ATCATGAGAGTCGCAAGCAA+GGG + Chr8:7160596-7160615 MsG0880042329.01.T01:CDS 45.0%
ATGCCTGCCAAATAGGAGAT+TGG - Chr8:7159510-7159529 None:intergenic 45.0%
ATTGTATGGCATATGACCGG+TGG - Chr8:7160884-7160903 None:intergenic 45.0%
CCACTTAGTGGAATAAGGCT+TGG - Chr8:7161266-7161285 None:intergenic 45.0%
CGCCTGTTAAGATCTTGAGA+AGG - Chr8:7158977-7158996 None:intergenic 45.0%
CTTATTCCACTAAGTGGGGT+CGG + Chr8:7161269-7161288 MsG0880042329.01.T01:intron 45.0%
CTTGTAGGACCATCTTGCAT+CGG + Chr8:7161600-7161619 MsG0880042329.01.T01:intron 45.0%
GACTTGATATCTTCAGGTGG+CGG - Chr8:7159031-7159050 None:intergenic 45.0%
GATCTTAACAGGCGGATACA+AGG + Chr8:7158983-7159002 MsG0880042329.01.T01:CDS 45.0%
GGAACTCGTTAACAAGTCGA+GGG + Chr8:7158019-7158038 MsG0880042329.01.T01:intron 45.0%
GGACAGTTGGATCCTTTGAA+AGG + Chr8:7158851-7158870 MsG0880042329.01.T01:CDS 45.0%
GGCTGAAATATGTCTGGCAA+AGG - Chr8:7161087-7161106 None:intergenic 45.0%
GGTGGAAAAAAGCTTGTGCA+TGG + Chr8:7158341-7158360 MsG0880042329.01.T01:intron 45.0%
GTCTAGTGGTTCTTGGAATC+AGG + Chr8:7159276-7159295 MsG0880042329.01.T01:CDS 45.0%
TAAATCGTCAACCAGAGGTG+TGG - Chr8:7160425-7160444 None:intergenic 45.0%
TAATACTCTTGGCGGCATGT+TGG + Chr8:7160813-7160832 MsG0880042329.01.T01:CDS 45.0%
TAGCCAGTGTCTATCAAGTC+GGG - Chr8:7160329-7160348 None:intergenic 45.0%
TATGCAACTGTCTAGCTGTC+AGG + Chr8:7161543-7161562 MsG0880042329.01.T01:intron 45.0%
TCTAACAGAGGCTGCAAAGT+TGG + Chr8:7159447-7159466 MsG0880042329.01.T01:CDS 45.0%
TGAGAGCAAAGAACATGCAG+AGG + Chr8:7160531-7160550 MsG0880042329.01.T01:CDS 45.0%
TGAGTCCATCCTCAGAAAGA+AGG + Chr8:7159987-7160006 MsG0880042329.01.T01:CDS 45.0%
TGCAAGACTTGTCTCACTTG+TGG + Chr8:7158364-7158383 MsG0880042329.01.T01:intron 45.0%
TGCACTAAATAAGGCTGTGC+GGG + Chr8:7158877-7158896 MsG0880042329.01.T01:CDS 45.0%
TGGAACTCGTTAACAAGTCG+AGG + Chr8:7158018-7158037 MsG0880042329.01.T01:intron 45.0%
TGGAAGAGAGAGAAAGTGAG+AGG - Chr8:7157309-7157328 None:intergenic 45.0%
TGGAATCGTACTGGAGATCA+CGG + Chr8:7157492-7157511 MsG0880042329.01.T01:CDS 45.0%
TTGCTCTTCCACACATGCAA+TGG - Chr8:7162004-7162023 None:intergenic 45.0%
TTGTATGGCATATGACCGGT+GGG - Chr8:7160883-7160902 None:intergenic 45.0%
TTTAACACTTGACCCCCTGA+TGG + Chr8:7160206-7160225 MsG0880042329.01.T01:intron 45.0%
TTTGACATCATCCACACCTC+TGG + Chr8:7160411-7160430 MsG0880042329.01.T01:intron 45.0%
TTTGCTAAACGTACCCGTAC+CGG - Chr8:7158172-7158191 None:intergenic 45.0%
! AGATGGCGGTGTTTCTCAAA+TGG + Chr8:7161041-7161060 MsG0880042329.01.T01:CDS 45.0%
! CTTTTCTCTCAAGGAGGCTT+GGG - Chr8:7160088-7160107 None:intergenic 45.0%
! GCAGCAGTTACTTGCTACAA+TGG + Chr8:7160984-7161003 MsG0880042329.01.T01:CDS 45.0%
! TTTAGCTTAACTAGTGCCCC+GGG - Chr8:7161440-7161459 None:intergenic 45.0%
! TTTGGTTCCAGTTCCAAGCA+AGG + Chr8:7160649-7160668 MsG0880042329.01.T01:CDS 45.0%
! TTTTCTCTCAAGGAGGCTTG+GGG - Chr8:7160087-7160106 None:intergenic 45.0%
!! CCAAGCCTTATTCCACTAAG+TGG + Chr8:7161263-7161282 MsG0880042329.01.T01:intron 45.0%
!! GCATGCTTTTGTTTCCTTGC+TGG + Chr8:7158094-7158113 MsG0880042329.01.T01:intron 45.0%
!!! CACAAGCTTTTTTCCACCCT+TGG - Chr8:7158339-7158358 None:intergenic 45.0%
AAATGCTACTAGTTCCCCCC+GGG + Chr8:7161420-7161439 MsG0880042329.01.T01:intron 50.0%
AACAGGCGGATACAAGGGTT+TGG + Chr8:7158989-7159008 MsG0880042329.01.T01:CDS 50.0%
AAGGATCCAACTGTCCCTTG+TGG - Chr8:7158847-7158866 None:intergenic 50.0%
ACAAGTCGAGGGCAATCACT+TGG + Chr8:7158030-7158049 MsG0880042329.01.T01:intron 50.0%
ACAGGCGGATACAAGGGTTT+GGG + Chr8:7158990-7159009 MsG0880042329.01.T01:CDS 50.0%
ACCACCACGTTCCGATTCAA+CGG - Chr8:7159191-7159210 None:intergenic 50.0%
ACCTCAAGTACGAAGCCGAA+GGG + Chr8:7160727-7160746 MsG0880042329.01.T01:CDS 50.0%
AGAGGAACGATTTCGTGGCA+GGG - Chr8:7157291-7157310 None:intergenic 50.0%
AGCAGACATGCCTGCCAAAT+AGG - Chr8:7159517-7159536 None:intergenic 50.0%
ATGCCATACAATATGCCGCC+TGG + Chr8:7160892-7160911 MsG0880042329.01.T01:CDS 50.0%
ATTGCACCACAAGGGACAGT+TGG + Chr8:7158838-7158857 MsG0880042329.01.T01:CDS 50.0%
CCAAGCCTCCTTGAGAGAAA+AGG + Chr8:7160086-7160105 MsG0880042329.01.T01:CDS 50.0%
CGACCCCACTTAGTGGAATA+AGG - Chr8:7161271-7161290 None:intergenic 50.0%
GAAATGCTACTAGTTCCCCC+CGG + Chr8:7161419-7161438 MsG0880042329.01.T01:intron 50.0%
GATCACAGGCTCAGCCAATT+GGG + Chr8:7160836-7160855 MsG0880042329.01.T01:CDS 50.0%
GATCATGAGAGTCGCAAGCA+AGG + Chr8:7160595-7160614 MsG0880042329.01.T01:CDS 50.0%
GCTCCAATCTCCTATTTGGC+AGG + Chr8:7159504-7159523 MsG0880042329.01.T01:CDS 50.0%
GGCGGTGTTTCTCAAATGGT+TGG + Chr8:7161045-7161064 MsG0880042329.01.T01:CDS 50.0%
TACCTCAAGTACGAAGCCGA+AGG + Chr8:7160726-7160745 MsG0880042329.01.T01:CDS 50.0%
TTAGCTTAACTAGTGCCCCG+GGG - Chr8:7161439-7161458 None:intergenic 50.0%
TTGACCGTTGAATCGGAACG+TGG + Chr8:7159184-7159203 MsG0880042329.01.T01:CDS 50.0%
TTGCTAAACGTACCCGTACC+GGG - Chr8:7158171-7158190 None:intergenic 50.0%
! ATCTTGAGAAGGTGCAGCAG+CGG - Chr8:7158966-7158985 None:intergenic 50.0%
! CAGAGACATTTAAGACGCCG+AGG - Chr8:7159792-7159811 None:intergenic 50.0%
! CCTTTTCTCTCAAGGAGGCT+TGG - Chr8:7160089-7160108 None:intergenic 50.0%
AACTGCTCAGGAGGCTGTCT+CGG + Chr8:7158901-7158920 MsG0880042329.01.T01:CDS 55.0%
AATCGCGAGCCGATGCAAGA+TGG - Chr8:7161612-7161631 None:intergenic 55.0%
AATGCTACTAGTTCCCCCCG+GGG + Chr8:7161421-7161440 MsG0880042329.01.T01:intron 55.0%
ACCGTTGAATCGGAACGTGG+TGG + Chr8:7159187-7159206 MsG0880042329.01.T01:CDS 55.0%
AGCTTGAATGGCATCTCGGG+AGG - Chr8:7159425-7159444 None:intergenic 55.0%
AGGCCAAGAACCTGTCCATC+AGG - Chr8:7160224-7160243 None:intergenic 55.0%
CAGTGTCTATCAAGTCGGGC+AGG - Chr8:7160325-7160344 None:intergenic 55.0%
CCAAGAACCTGTCCATCAGG+GGG - Chr8:7160221-7160240 None:intergenic 55.0%
GAAGAGCGGTGGAATCGTAC+TGG + Chr8:7157483-7157502 MsG0880042329.01.T01:CDS 55.0%
GAGAGGAACGATTTCGTGGC+AGG - Chr8:7157292-7157311 None:intergenic 55.0%
GCCAAGAACCTGTCCATCAG+GGG - Chr8:7160222-7160241 None:intergenic 55.0%
GCTTGAATGGCATCTCGGGA+GGG - Chr8:7159424-7159443 None:intergenic 55.0%
GGAAACGAGTAGAAGAGCGG+TGG + Chr8:7157472-7157491 MsG0880042329.01.T01:CDS 55.0%
GGATCACAGGCTCAGCCAAT+TGG + Chr8:7160835-7160854 MsG0880042329.01.T01:CDS 55.0%
GGCCAAGAACCTGTCCATCA+GGG - Chr8:7160223-7160242 None:intergenic 55.0%
GGCTGCAAAGTTGGATGCTC+TGG + Chr8:7159456-7159475 MsG0880042329.01.T01:CDS 55.0%
TAGCTTAACTAGTGCCCCGG+GGG - Chr8:7161438-7161457 None:intergenic 55.0%
TCCCTTCGGCTTCGTACTTG+AGG - Chr8:7160731-7160750 None:intergenic 55.0%
TTATCTGCGTTGCACGGGTG+CGG + Chr8:7158137-7158156 MsG0880042329.01.T01:intron 55.0%
! CAGGTTCTTGGCCTTCTAGG+TGG + Chr8:7160230-7160249 MsG0880042329.01.T01:intron 55.0%
! CTGCCCGACTTGATAGACAC+TGG + Chr8:7160323-7160342 MsG0880042329.01.T01:CDS 55.0%
! GGACAGGTTCTTGGCCTTCT+AGG + Chr8:7160227-7160246 MsG0880042329.01.T01:intron 55.0%
! TCAGAGGTGCACAAGATGGG+TGG + Chr8:7158224-7158243 MsG0880042329.01.T01:intron 55.0%
!! GGCAAAGGGGAAGCACCATT+AGG - Chr8:7161072-7161091 None:intergenic 55.0%
!! TTGCATCGGCTCGCGATTCA+AGG + Chr8:7161614-7161633 MsG0880042329.01.T01:CDS 55.0%
!! TTGGCTGGTCTCCACCTAGA+AGG - Chr8:7160244-7160263 None:intergenic 55.0%
AAGCAGCCGACCCCACTTAG+TGG - Chr8:7161278-7161297 None:intergenic 60.0%
ACTAAGTGGGGTCGGCTGCT+TGG + Chr8:7161277-7161296 MsG0880042329.01.T01:intron 60.0%
AGCTTAACTAGTGCCCCGGG+GGG - Chr8:7161437-7161456 None:intergenic 60.0%
TATCTGCGTTGCACGGGTGC+GGG + Chr8:7158138-7158157 MsG0880042329.01.T01:intron 60.0%
TGGCGGCATGTTGGGATCAC+AGG + Chr8:7160822-7160841 MsG0880042329.01.T01:CDS 60.0%
TGTGCGGGAAACTGCTCAGG+AGG + Chr8:7158892-7158911 MsG0880042329.01.T01:CDS 60.0%
! CACTTGACCCCCTGATGGAC+AGG + Chr8:7160211-7160230 MsG0880042329.01.T01:intron 60.0%
! CCCCCTGATGGACAGGTTCT+TGG + Chr8:7160218-7160237 MsG0880042329.01.T01:intron 60.0%
GGCTGTGCGGGAAACTGCTC+AGG + Chr8:7158889-7158908 MsG0880042329.01.T01:CDS 65.0%
TGCGGGTACGGTACCCGGTA+CGG + Chr8:7158155-7158174 MsG0880042329.01.T01:intron 65.0%
TGGCATCTCGGGAGGGCTGT+AGG - Chr8:7159417-7159436 None:intergenic 65.0%
ACGGGTGCGGGTACGGTACC+CGG + Chr8:7158150-7158169 MsG0880042329.01.T01:intron 70.0%
GCGGGTACGGTACCCGGTAC+GGG + Chr8:7158156-7158175 MsG0880042329.01.T01:intron 70.0%
GCGTTGCACGGGTGCGGGTA+CGG + Chr8:7158143-7158162 MsG0880042329.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr8 gene 7157200 7162045 7157200 ID=MsG0880042329.01;Name=MsG0880042329.01
Chr8 mRNA 7157200 7162045 7157200 ID=MsG0880042329.01.T01;Parent=MsG0880042329.01;Name=MsG0880042329.01.T01;_AED=0.47;_eAED=0.47;_QI=270|0.6|0.33|1|0.6|0.66|6|397|679
Chr8 exon 7157200 7157676 7157200 ID=MsG0880042329.01.T01:exon:1238;Parent=MsG0880042329.01.T01
Chr8 exon 7158749 7159556 7158749 ID=MsG0880042329.01.T01:exon:1239;Parent=MsG0880042329.01.T01
Chr8 exon 7159947 7160116 7159947 ID=MsG0880042329.01.T01:exon:1240;Parent=MsG0880042329.01.T01
Chr8 exon 7160233 7160386 7160233 ID=MsG0880042329.01.T01:exon:1241;Parent=MsG0880042329.01.T01
Chr8 exon 7160530 7161188 7160530 ID=MsG0880042329.01.T01:exon:1242;Parent=MsG0880042329.01.T01
Chr8 exon 7161607 7162045 7161607 ID=MsG0880042329.01.T01:exon:1243;Parent=MsG0880042329.01.T01
Chr8 five_prime_UTR 7157200 7157469 7157200 ID=MsG0880042329.01.T01:five_prime_utr;Parent=MsG0880042329.01.T01
Chr8 CDS 7157470 7157676 7157470 ID=MsG0880042329.01.T01:cds;Parent=MsG0880042329.01.T01
Chr8 CDS 7158749 7159556 7158749 ID=MsG0880042329.01.T01:cds;Parent=MsG0880042329.01.T01
Chr8 CDS 7159947 7160116 7159947 ID=MsG0880042329.01.T01:cds;Parent=MsG0880042329.01.T01
Chr8 CDS 7160233 7160386 7160233 ID=MsG0880042329.01.T01:cds;Parent=MsG0880042329.01.T01
Chr8 CDS 7160530 7161188 7160530 ID=MsG0880042329.01.T01:cds;Parent=MsG0880042329.01.T01
Chr8 CDS 7161607 7161648 7161607 ID=MsG0880042329.01.T01:cds;Parent=MsG0880042329.01.T01
Chr8 three_prime_UTR 7161649 7162045 7161649 ID=MsG0880042329.01.T01:three_prime_utr;Parent=MsG0880042329.01.T01
Gene Sequence

>MsG0880042329.01.T01

ATGGAAACGAGTAGAAGAGCGGTGGAATCGTACTGGAGATCACGGTTAATCGATTCAGCTACATCAGATGAAGATAAAGTCGCACCCGTTTACAAATTAGAAGAAATTTGCGAGCTTTTGCGTTCTTCGCATGTTTCTATTGTTAAGGAAGTTTCTGATTTTGTTTTGAAACGTTTGGATCATAAGAGTCCCATTGTAAAACAGAAGGCTTTAAGATTGATAAAATATGCAGTTGGAAAGTCTGGTGCCGAGTTCAGAAGAGAAATGCAGAGACATTCAGTGGCAATTCGTCAATTATTGCACCACAAGGGACAGTTGGATCCTTTGAAAGGTGATGCACTAAATAAGGCTGTGCGGGAAACTGCTCAGGAGGCTGTCTCGGCCATTTTCTCAGAAGAAAATAGCAATAATAATTATAAAGCCGCTGCTGCACCTTCTCAAGATCTTAACAGGCGGATACAAGGGTTTGGGAATACAAACTATGAACCGCCACCTGAAGATATCAAGTCTTTTATTAGTGAGGTAGTTGGTATTGGAAGTGCATCAATTAAGCAAGGACTTCATAGCTTAACACAAGGACATTCTCTAATGAAGAATGAAACCGGAAGTGGAAGCTACAAGAGTCCAAATCTTCAAAGGTCGTTGACCGTTGAATCGGAACGTGGTGGTGACAGATATGAACCAGTTGCATATCGTAGTGAAAACCAAAGTAGTTTTGGACTTTCTAAGAATCAGTCTAGTGGTTCTTGGAATCAGGATTCAAGAGTAAATAAGATGGAAATTTCAAATGGTGAATCCAGTGGAAATTCTTCAGAGATTAAGACTAGAGAAGATAGGTTGCTCGAGACAATTGTAACTTCAGGAGGTGTTCGCCTACAGCCCTCCCGAGATGCCATTCAAGCTTTTCTAACAGAGGCTGCAAAGTTGGATGCTCTGGCTTTAAGTCATGCTCTTGAACTAAAGCTCCAATCTCCTATTTGGCAGGCATGTCTGCTATGTTTATATTTCTACAAAAAGTTAAGTTTTCAGGTACGCATGAAAGCTGTTTGTGTTCTTGAGTCCATCCTCAGAAAGAAGGATGATGATCATTTTTCACATGTGGCATCTTACTTCATTGAAAACAAAGACGTGGTGCTGAGATGTTCTGAATCTCCCCAAGCCTCCTTGAGAGAAAAGGCTATAAAGGTTCTTGGCCTTCTAGGTGGAGACCAGCCAAACAGTTCTTCTATTAATTCAGAGAAAGCTGTAAAGAAAGAGACTGCTGCTGTTGTTGACCTGCCCGACTTGATAGACACTGGCTATTCAAATGATAACAACATAATGGACAACTCAACACATAGTGAGAGCAAAGAACATGCAGAGGATCTATTTTCAGGGATGACAGTTGGTGATGATAAACAGGGTGATCATGAGAGTCGCAAGCAAGGGATTCAAAGTGATCCTCAACTTTTTGATCTATTTGGTTCCAGTTCCAAGCAAGGAAATCATAATGGGTCTGTTAGTGATTTAATGGGTGGTTTGTCAATAGATGAAAATACCTCAAGTACGAAGCCGAAGGGAACATCATCCACAGTGCAATCCGAATCTTTATTTTCAGGTTTAAACAATCATACCCTTGACAATAATACTCTTGGCGGCATGTTGGGATCACAGGCTCAGCCAATTGGGTTCAATGTAAATCCAATGTTTCCCACCGGTCATATGCCATACAATATGCCGCCTGGTATTATGTTGAATCAACCATATCCTACTCAACCTCTTAATTATGGTGCAATGGGAACTATATTGGCTCAGCAGCAGTTACTTGCTACAATGGCTAATTTCCAACACATTAGTAATGTCAACATGCGAGATGGCGGTGTTTCTCAAATGGTTGGACCTAATGGTGCTTCCCCTTTGCCAGACATATTTCAGCCAAATTTGACATCTCAAACTCCCAGCTCAATCATCAACAATTCAAAGAAAGAAGATAATACTAAAGCATTTGATTTTATCTCGGACCATCTTGCATCGGCTCGCGATTCAAGGAGAGTGATTTGA

Protein sequence

>MsG0880042329.01.T01

METSRRAVESYWRSRLIDSATSDEDKVAPVYKLEEICELLRSSHVSIVKEVSDFVLKRLDHKSPIVKQKALRLIKYAVGKSGAEFRREMQRHSVAIRQLLHHKGQLDPLKGDALNKAVRETAQEAVSAIFSEENSNNNYKAAAAPSQDLNRRIQGFGNTNYEPPPEDIKSFISEVVGIGSASIKQGLHSLTQGHSLMKNETGSGSYKSPNLQRSLTVESERGGDRYEPVAYRSENQSSFGLSKNQSSGSWNQDSRVNKMEISNGESSGNSSEIKTREDRLLETIVTSGGVRLQPSRDAIQAFLTEAAKLDALALSHALELKLQSPIWQACLLCLYFYKKLSFQVRMKAVCVLESILRKKDDDHFSHVASYFIENKDVVLRCSESPQASLREKAIKVLGLLGGDQPNSSSINSEKAVKKETAAVVDLPDLIDTGYSNDNNIMDNSTHSESKEHAEDLFSGMTVGDDKQGDHESRKQGIQSDPQLFDLFGSSSKQGNHNGSVSDLMGGLSIDENTSSTKPKGTSSTVQSESLFSGLNNHTLDNNTLGGMLGSQAQPIGFNVNPMFPTGHMPYNMPPGIMLNQPYPTQPLNYGAMGTILAQQQLLATMANFQHISNVNMRDGGVSQMVGPNGASPLPDIFQPNLTSQTPSSIINNSKKEDNTKAFDFISDHLASARDSRRVI*