AlfalfaGEDB | MsG0480019170.01

M. sativa cultivar ZhongmuNo.1 / MsG0480019170.01

KEGG: K00800
GO: GO:0003824 GO:0003866 GO:0009073 GO:0016765
PFAM: PF00275

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480019170.01.T01	XP_003605139.1	95.977	522	6	2	1	507	1	522	0	1010

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480019170.01.T01	P11043	74.952	523	105	5	4	507	1	516	0	762

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480019170.01.T01	G7JEN4	95.977	522	6	2	1	507	1	522	0.0	1010

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047814.01	MsG0480019170.01	0.834192	3.453918e-56	4.068272e-53
MsG0080048058.01	MsG0480019170.01	0.891641	3.298695e-74	2.917054e-70
MsG0080048765.01	MsG0480019170.01	0.800356	1.497761e-48	6.959588e-46
MsG0180000001.01	MsG0480019170.01	0.838218	3.276845e-57	4.359257e-54
MsG0180000024.01	MsG0480019170.01	0.826609	2.469247e-54	2.326970e-51
MsG0180000197.01	MsG0480019170.01	0.830179	3.397498e-55	3.552942e-52
MsG0180000295.01	MsG0480019170.01	0.823001	1.751914e-53	1.490017e-50
MsG0180000555.01	MsG0480019170.01	0.824895	6.298542e-54	5.653382e-51
MsG0180000585.01	MsG0480019170.01	0.808648	2.793042e-50	1.605708e-47
MsG0180000741.01	MsG0480019170.01	0.827636	1.402499e-54	1.361647e-51

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PPI

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Gene1	Gene2	Type
MsG0180001235.01	MsG0480019170.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480019170.01.T01	MTR_4g024620	95.977	522	6	2	1	507	1	522	0.0	1010

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0480019170.01.T01	AT2G45300	73.282	524	119	4	1	507	1	520	759
MsG0480019170.01.T01	AT2G45300	73.282	524	119	4	1	507	1	520	759
MsG0480019170.01.T01	AT2G45300	73.282	524	119	4	1	507	1	520	759
MsG0480019170.01.T01	AT2G45300	72.832	519	120	4	1	502	1	515	746
MsG0480019170.01.T01	AT1G48860	76.778	478	94	4	43	507	48	521	711
MsG0480019170.01.T01	AT1G48860	75.417	480	80	3	66	507	10	489	694

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Find 141 sgRNAs with CRISPR-Local

Find 447 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGTGTAACTGTTACC+GGG	0.672809	4:-15386803	MsG0480019170.01.T01:CDS
AAAGACCCTTGGACTTCGTG+TGG	0.599980	4:-15389679	MsG0480019170.01.T01:CDS
AACAACCAAACAAGCTGTTG+TGG	0.587688	4:-15389646	MsG0480019170.01.T01:CDS
AACACAGTGCTAATTGGGAC+AGG	0.576861	4:-15387928	MsG0480019170.01.T01:intron
AACTGTTACCGGGCCTCCAC+GGG	0.469893	4:-15386793	MsG0480019170.01.T01:CDS
AACTTTAAGCAAAATTGAAA+TGG	0.394967	4:-15391669	MsG0480019170.01.T01:exon
AATCTGCACAGAACTCAGAA+AGG	0.627914	4:-15385559	MsG0480019170.01.T01:intron
AATGCTTTGTAAATCTCTCA+AGG	0.535419	4:+15385115	None:intergenic
AATGTATTGGTCTTTGTATT+GGG	0.289337	4:+15391735	None:intergenic
AATTGGTCTCTCTCTCATTC+GGG	0.412106	4:+15388960	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTACAAGTAGGTTTCTA+CGG	-	Chr4:15388996-15389015	MsG0480019170.01.T01:intron	30.0%
AATGCTTTGTAAATCTCTCA+AGG	+	Chr4:15391769-15391788	None:intergenic	30.0%
AATTTATTCCTTGGAAATGC+CGG	-	Chr4:15387299-15387318	MsG0480019170.01.T01:intron	30.0%
ACTTTGTTGATATTTCAGCT+AGG	-	Chr4:15391554-15391573	MsG0480019170.01.T01:CDS	30.0%
AGTACACTTTCATAAACATG+GGG	-	Chr4:15386766-15386785	MsG0480019170.01.T01:CDS	30.0%
ATCAATGAGAATTGAGAAGT+TGG	+	Chr4:15389907-15389926	None:intergenic	30.0%
ATCCATAATAGGCATATGAA+TGG	+	Chr4:15388624-15388643	None:intergenic	30.0%
ATGTATTTGAGCTTATCTAC+TGG	+	Chr4:15388541-15388560	None:intergenic	30.0%
ATTTCAGATACATACTTGAC+GGG	-	Chr4:15387894-15387913	MsG0480019170.01.T01:intron	30.0%
CAATATCATCATGTGAACAA+TGG	-	Chr4:15389274-15389293	MsG0480019170.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	15384926	15391977	15384926	ID=MsG0480019170.01;Name=MsG0480019170.01
Chr4	mRNA	15384926	15391977	15384926	ID=MsG0480019170.01.T01;Parent=MsG0480019170.01;Name=MsG0480019170.01.T01;_AED=0.42;_eAED=0.42;_QI=305\|0.85\|0.87\|1\|1\|1\|8\|187\|507
Chr4	exon	15384926	15385331	15384926	ID=MsG0480019170.01.T01:exon:4135;Parent=MsG0480019170.01.T01
Chr4	exon	15385560	15385621	15385560	ID=MsG0480019170.01.T01:exon:4134;Parent=MsG0480019170.01.T01
Chr4	exon	15386673	15386883	15386673	ID=MsG0480019170.01.T01:exon:4133;Parent=MsG0480019170.01.T01
Chr4	exon	15387700	15387817	15387700	ID=MsG0480019170.01.T01:exon:4132;Parent=MsG0480019170.01.T01
Chr4	exon	15387929	15388113	15387929	ID=MsG0480019170.01.T01:exon:4131;Parent=MsG0480019170.01.T01
Chr4	exon	15388849	15389002	15388849	ID=MsG0480019170.01.T01:exon:4130;Parent=MsG0480019170.01.T01
Chr4	exon	15389528	15389763	15389528	ID=MsG0480019170.01.T01:exon:4129;Parent=MsG0480019170.01.T01
Chr4	exon	15391334	15391977	15391334	ID=MsG0480019170.01.T01:exon:4128;Parent=MsG0480019170.01.T01
Chr4	five_prime_UTR	15391673	15391977	15391673	ID=MsG0480019170.01.T01:five_prime_utr;Parent=MsG0480019170.01.T01
Chr4	CDS	15391334	15391672	15391334	ID=MsG0480019170.01.T01:cds;Parent=MsG0480019170.01.T01
Chr4	CDS	15389528	15389763	15389528	ID=MsG0480019170.01.T01:cds;Parent=MsG0480019170.01.T01
Chr4	CDS	15388849	15389002	15388849	ID=MsG0480019170.01.T01:cds;Parent=MsG0480019170.01.T01
Chr4	CDS	15387929	15388113	15387929	ID=MsG0480019170.01.T01:cds;Parent=MsG0480019170.01.T01
Chr4	CDS	15387700	15387817	15387700	ID=MsG0480019170.01.T01:cds;Parent=MsG0480019170.01.T01
Chr4	CDS	15386673	15386883	15386673	ID=MsG0480019170.01.T01:cds;Parent=MsG0480019170.01.T01
Chr4	CDS	15385560	15385621	15385560	ID=MsG0480019170.01.T01:cds;Parent=MsG0480019170.01.T01
Chr4	CDS	15385113	15385331	15385113	ID=MsG0480019170.01.T01:cds;Parent=MsG0480019170.01.T01
Chr4	three_prime_UTR	15384926	15385112	15384926	ID=MsG0480019170.01.T01:three_prime_utr;Parent=MsG0480019170.01.T01

Gene Sequence

>MsG0480019170.01.T01

ATGGCCCAGTTAAGCAAAATCAACAATCTAGTTCAAACTACTCAAAATTTTCACAATTCAACAAATTCCAACAAACCCAATTCAGCAAAATCAGTTTCATTGAGGTCAAGCATTTGGGGCTCTTCAAAATCATGGAGTTTGAAGCATAAAAATGGAGTCTTTATTGGAAATTGTGATGTGGGTAGGAGGAATTCTGTTGTGTTGAAGGCTTCTGCTTCTGTTGCTGCTGCGGCGCCGGAGATTGTGTTGGAACCTATTAGGGAGATTTCTGGAAGTATTACATTGCCTGGGTCTAAGTCTTTGTCCAATCGGATTTTGCTTCTTGCTGCTCTCTCTGAGGGAACAACTGTTGTAGAGAACTTGTTAGATAGTGAGGATATTCATTACATGCTTGAGGCATTAAAGACCCTTGGACTTCGTGTGGAAGATGACAAAACAACCAAACAAGCTGTTGTGGAAGGCAGTGGTGGGTTATTTCCTGAATCTAAAGATGAAGTTAATTTATTCCTTGGAAATGCCGGTACTGCAATGCGTCCTTTGACGGCAGCCTTGGTTGCTGCAGGTGGAAATACAAGATACATACTTGACGGGGTGCCCCGAATGAGAGAGAGACCAATTGGAGATTTAGTGTCTGGTCTTAAGCAACTTGGTGCAGATGTTGATTGTTTTCTTGGCACAAACTGTCCACCTGTTCGTATAATTGGGAAGGGAGGGCTTCCAGGGGGAAAGGTGAAACTGTCTGGATCTATTAGTAGTCAGTACTTGACTGCTTTGCTTATGGCAGCTCCGTTGGCCCTTGGTGATGTTGAGATTGAGATTGTTGATAAACTGATTTCTGTTCCGTATGTCGAAATGACTTTGAAGTTGATGGAGCGCTTTGGAGTCTTCGTAGAACACAGTGCTAATTGGGACAGGTCTCCCGGCAATGCTTTTGTTGAAGGTGATGCTTCAAGTGCTAGTTACTTTCTAGCTGGTGCAGCAGTTACTGGCGGAACTATCACGGTTATAGGCTGTGGGACAAGCAGTTTACAGGGAGATGTAAAATTTGCTGAAGTTCTTGAAAAGATGGGAGCTAAAGTTACATGGACAGAAAACAGTGTAACTGTTACCGGGCCTCCACGGGATTCTTCCGGTCGGAAAGTCTTGCAAGGCATTGATGTCAATATGAACAAGATGCCAGATGTTGCCATGACACTTGCTGTTGTTGCACTATATGCTAATGGTCCCACTGCTATTAGAGATGTGGCAAGTTGGAGAGTTAAAGAAACTGAAAGAATGATAGCAATCTGCACAGAACTCAGAAAGCTAGGAGCAATAGTTGAAGAAGGTCCTGATTACTGTGTGATAACACCACCTGAGAAATTGAATGTCACATCAATTGATACATATGATGATCATAGAATGGCCATGGCATTTTCACTTGCTGCTTGTGGTGATGTTCCAGTTACCATCAAGGATCCTGGTTGCACAAGGAAAACATTCCCTGACTACTTTCAAGTCCTTGAGAGATTTACAAAGCATTAA

Protein sequence

>MsG0480019170.01.T01

MAQLSKINNLVQTTQNFHNSTNSNKPNSAKSVSLRSSIWGSSKSWSLKHKNGVFIGNCDVGRRNSVVLKASASVAAAAPEIVLEPIREISGSITLPGSKSLSNRILLLAALSEGTTVVENLLDSEDIHYMLEALKTLGLRVEDDKTTKQAVVEGSGGLFPESKDEVNLFLGNAGTAMRPLTAALVAAGGNTRYILDGVPRMRERPIGDLVSGLKQLGADVDCFLGTNCPPVRIIGKGGLPGGKVKLSGSISSQYLTALLMAAPLALGDVEIEIVDKLISVPYVEMTLKLMERFGVFVEHSANWDRSPGNAFVEGDASSASYFLAGAAVTGGTITVIGCGTSSLQGDVKFAEVLEKMGAKVTWTENSVTVTGPPRDSSGRKVLQGIDVNMNKMPDVAMTLAVVALYANGPTAIRDVASWRVKETERMIAICTELRKLGAIVEEGPDYCVITPPEKLNVTSIDTYDDHRMAMAFSLAACGDVPVTIKDPGCTRKTFPDYFQVLERFTKH*