AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023738.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023738.01.T01 MTR_8g101230 88.125 320 1 2 1 287 1 316 0.0 541
MsG0480023738.01.T01 MTR_8g101230 86.250 320 1 2 1 287 1 310 0.0 526
MsG0480023738.01.T01 MTR_8g101230 86.380 279 1 2 1 246 1 275 1.16e-165 461
MsG0480023738.01.T02 MTR_8g101230 88.125 320 1 2 1 287 1 316 0.0 541
MsG0480023738.01.T02 MTR_8g101230 86.250 320 1 2 1 287 1 310 0.0 526
MsG0480023738.01.T02 MTR_8g101230 86.380 279 1 2 1 246 1 275 1.16e-165 461
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023738.01.T01 AT2G26590 59.306 317 77 5 4 286 2 300 3.79e-116 336
MsG0480023738.01.T01 AT2G26590 59.306 317 77 5 4 286 2 300 3.79e-116 336
MsG0480023738.01.T01 AT2G26590 59.306 317 77 5 4 286 2 300 3.79e-116 336
MsG0480023738.01.T01 AT2G26590 57.729 317 78 6 4 286 2 296 4.80e-110 320
MsG0480023738.01.T02 AT2G26590 59.306 317 77 5 4 286 2 300 3.79e-116 336
MsG0480023738.01.T02 AT2G26590 59.306 317 77 5 4 286 2 300 3.79e-116 336
MsG0480023738.01.T02 AT2G26590 59.306 317 77 5 4 286 2 300 3.79e-116 336
MsG0480023738.01.T02 AT2G26590 57.729 317 78 6 4 286 2 296 4.80e-110 320

Find 22 sgRNAs with CRISPR-Local

Find 437 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGTGGTTATATGGAATAGA+AGG 0.324248 4:-89249037 MsG0480023738.01.T01:five_prime_UTR
ATGAGAATTCCGTGGTTATA+TGG 0.326216 4:-89249046 None:intergenic
GAGATTATTACCTGGATTGC+AGG 0.356564 4:+89248703 None:intergenic
AAATATTAGTAACAAAATAA+AGG 0.400748 4:+89248785 None:intergenic
CGATGGAAGATGAACTCATC+TGG 0.449705 4:+89248734 None:intergenic
AGTAACAAAATAAAGGAGAA+AGG 0.455972 4:+89248792 None:intergenic
TACTCAACTCAATTCGATGA+TGG 0.475185 4:+89248869 None:intergenic
TGGTTTCAGTAAACTGCAAA+AGG 0.485844 4:+89248754 None:intergenic
AACTTCATATTTCGCACTCT+AGG 0.493516 4:-89248827 MsG0480023738.01.T01:intron
GTAACAAAATAAAGGAGAAA+GGG 0.500680 4:+89248793 None:intergenic
ACTTCATATTTCGCACTCTA+GGG 0.503796 4:-89248826 MsG0480023738.01.T01:intron
CGTGGTTATATGGAATAGAA+GGG 0.525007 4:-89249036 MsG0480023738.01.T01:five_prime_UTR
GATTGCAGGAAAAGCGTCGA+TGG 0.560072 4:+89248717 None:intergenic
AATCTGAGTGAATAAACAAA+CGG 0.561314 4:-89248924 MsG0480023738.01.T01:five_prime_UTR
TAGAGTGCGAAATATGAAGT+TGG 0.576440 4:+89248829 None:intergenic
GCGAAATATGAAGTTGGAGT+CGG 0.590326 4:+89248835 None:intergenic
AGTAAACTGCAAAAGGAGCA+AGG 0.600409 4:+89248761 None:intergenic
GCGAAGCGAAAGTGAAAGTG+AGG 0.602045 4:+89248898 None:intergenic
AAATATGAAGTTGGAGTCGG+AGG 0.626384 4:+89248838 None:intergenic
GTGGTTATATGGAATAGAAG+GGG 0.648433 4:-89249035 MsG0480023738.01.T01:five_prime_UTR
CCTTCTATTCCATATAACCA+CGG 0.673307 4:+89249037 None:intergenic
CGAAGCGAAAGTGAAAGTGA+GGG 0.703199 4:+89248899 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAGAAG+GGG - Chr4:89242382-89242401 MsG0480023738.01.T01:three_prime_UTR 10.0%
!! AAATATTAGTAACAAAATAA+AGG + Chr4:89242592-89242611 None:intergenic 10.0%
!! ATTAGTAAATGAAATTTATA+GGG - Chr4:89244251-89244270 MsG0480023738.01.T01:intron 10.0%
!! TAAAAATAAACAAAAAATGA+AGG - Chr4:89248492-89248511 MsG0480023738.01.T01:intron 10.0%
!! TATTAGTAAATGAAATTTAT+AGG - Chr4:89244250-89244269 MsG0480023738.01.T01:intron 10.0%
!! TATTTACAAGATTATAAATA+AGG - Chr4:89246010-89246029 MsG0480023738.01.T01:intron 10.0%
!! TTAATAAAATTCAAATCTAT+CGG - Chr4:89248877-89248896 MsG0480023738.01.T01:five_prime_UTR 10.0%
!! TTATAAAAAATATTAGCAAA+AGG - Chr4:89247726-89247745 MsG0480023738.01.T01:intron 10.0%
!! TTGTGAAAAAAAATAAAAAT+TGG + Chr4:89243874-89243893 None:intergenic 10.0%
!!! TATTTAATTAAGATTTTTCA+AGG - Chr4:89248836-89248855 MsG0480023738.01.T01:intron 10.0%
!!! TTGTAAATAATTTATTTTCA+TGG - Chr4:89246543-89246562 MsG0480023738.01.T01:intron 10.0%
!! AAAAAAAAAACTTAAACTTC+AGG + Chr4:89243782-89243801 None:intergenic 15.0%
!! AACAGCAATTATATATATTT+GGG + Chr4:89243243-89243262 None:intergenic 15.0%
!! ATCAAAATCAATAACAATTA+AGG + Chr4:89248214-89248233 None:intergenic 15.0%
!! ATGAAATGTAAAAAAGAAAA+AGG + Chr4:89248060-89248079 None:intergenic 15.0%
!! TATAACTAGTAAAAACAAAA+GGG - Chr4:89243742-89243761 MsG0480023738.01.T01:intron 15.0%
!! TGAAATGTAAAAAAGAAAAA+GGG + Chr4:89248059-89248078 None:intergenic 15.0%
!! TTAGTAAATGAAATTTATAG+GGG - Chr4:89244252-89244271 MsG0480023738.01.T01:intron 15.0%
!! TTATAACTAGTAAAAACAAA+AGG - Chr4:89243741-89243760 MsG0480023738.01.T01:intron 15.0%
!!! ATTTTGCACAAAAAATTAAT+CGG + Chr4:89243384-89243403 None:intergenic 15.0%
!!! TGAACAATTTTGTTATTTAT+CGG - Chr4:89243628-89243647 MsG0480023738.01.T01:intron 15.0%
!!! TTTATTTTTTTTCACAAAGT+GGG - Chr4:89243877-89243896 MsG0480023738.01.T01:intron 15.0%
!!! TTTTATTTTTTTTCACAAAG+TGG - Chr4:89243876-89243895 MsG0480023738.01.T01:intron 15.0%
!!! TTTTTTTTTTTTTTTGACGT+TGG + Chr4:89242372-89242391 None:intergenic 15.0%
!! AAAATCAATAACAATTAAGG+TGG + Chr4:89248211-89248230 None:intergenic 20.0%
!! AATAAGAATAAGAATAAGAC+AGG - Chr4:89242409-89242428 MsG0480023738.01.T01:three_prime_UTR 20.0%
!! AGAATCAAAGAAATATATAC+AGG - Chr4:89243456-89243475 MsG0480023738.01.T01:intron 20.0%
!! AGATCTAAAGATTTATAAGT+TGG - Chr4:89245199-89245218 MsG0480023738.01.T01:intron 20.0%
!! ATAAGAATAAGAATAAGACA+GGG - Chr4:89242410-89242429 MsG0480023738.01.T01:three_prime_UTR 20.0%
!! ATAGGGAAATAATATTTGAA+TGG - Chr4:89243513-89243532 MsG0480023738.01.T01:CDS 20.0%
!! ATCTTTATATAGCAGAAAAT+AGG - Chr4:89243495-89243514 MsG0480023738.01.T01:intron 20.0%
!! ATGAATCAAAACCAAATAAA+AGG + Chr4:89246872-89246891 None:intergenic 20.0%
!! ATTTCATTTCAGAAGATATT+CGG - Chr4:89248073-89248092 MsG0480023738.01.T01:intron 20.0%
!! CATATCATCAAAAAAGTAAT+AGG + Chr4:89247447-89247466 None:intergenic 20.0%
!! CCTAAAAAAAAAAATTGACA+TGG + Chr4:89246186-89246205 None:intergenic 20.0%
!! CTATGAAAAATAAACACTAA+AGG + Chr4:89244286-89244305 None:intergenic 20.0%
!! CTTATTTATAAAGATAACGT+GGG - Chr4:89244378-89244397 MsG0480023738.01.T01:intron 20.0%
!! CTTGAAAAAGGAAAATTTAA+AGG - Chr4:89248806-89248825 MsG0480023738.01.T01:intron 20.0%
!! GAACAGCAATTATATATATT+TGG + Chr4:89243244-89243263 None:intergenic 20.0%
!! GAATCAAAGAAATATATACA+GGG - Chr4:89243457-89243476 MsG0480023738.01.T01:intron 20.0%
!! GATCAATATAATTCTTTAAC+TGG + Chr4:89248999-89249018 None:intergenic 20.0%
!! TATATATTTGGGAAGAAAAA+AGG + Chr4:89243232-89243251 None:intergenic 20.0%
!! TCTTTATATAGCAGAAAATA+GGG - Chr4:89243496-89243515 MsG0480023738.01.T01:intron 20.0%
!! TTCGTTAAAAAATGCATATT+AGG - Chr4:89246773-89246792 MsG0480023738.01.T01:intron 20.0%
!!! AAAGTATTTCCATTTGATTA+TGG - Chr4:89246658-89246677 MsG0480023738.01.T01:intron 20.0%
!!! ACTAAAAGTTTGTTTTTTGT+TGG - Chr4:89247238-89247257 MsG0480023738.01.T01:intron 20.0%
!!! AGATTCTTTTACTTATGTAA+AGG - Chr4:89248022-89248041 MsG0480023738.01.T01:intron 20.0%
!!! CAAAATAGATTTGAGATAAA+TGG + Chr4:89243961-89243980 None:intergenic 20.0%
!!! CCATGTCAATTTTTTTTTTT+AGG - Chr4:89246183-89246202 MsG0480023738.01.T01:intron 20.0%
!!! GAACAATTTTGTTATTTATC+GGG - Chr4:89243629-89243648 MsG0480023738.01.T01:intron 20.0%
!!! TAAAAAGTATTGTCAAATAG+TGG - Chr4:89246433-89246452 MsG0480023738.01.T01:intron 20.0%
!!! TTATAAGTTGGATAGAAATA+TGG - Chr4:89245211-89245230 MsG0480023738.01.T01:intron 20.0%
!!! TTATTTTTTTTCACAAAGTG+GGG - Chr4:89243878-89243897 MsG0480023738.01.T01:intron 20.0%
!!! TTTGGATATTCAAATGTTTT+CGG - Chr4:89247102-89247121 MsG0480023738.01.T01:intron 20.0%
!!! TTTTACTAGTTATAAACCAA+GGG + Chr4:89243736-89243755 None:intergenic 20.0%
!!! TTTTTACTAGTTATAAACCA+AGG + Chr4:89243737-89243756 None:intergenic 20.0%
!!! TTTTTTATGCTATGATTGAT+CGG - Chr4:89242868-89242887 MsG0480023738.01.T01:intron 20.0%
! AAGATAAAGAGATTATTACC+TGG + Chr4:89242682-89242701 None:intergenic 25.0%
! AATCTGAGTGAATAAACAAA+CGG - Chr4:89242450-89242469 MsG0480023738.01.T01:three_prime_UTR 25.0%
! AATGTAAAAAAGAAAAAGGG+AGG + Chr4:89248056-89248075 None:intergenic 25.0%
! ACCAAAGAAAACTACTATAT+GGG + Chr4:89243991-89244010 None:intergenic 25.0%
! ACCTATAGTAGAAAATATTG+TGG - Chr4:89245131-89245150 MsG0480023738.01.T01:intron 25.0%
! ACTAGAAACTTACATTTACT+TGG + Chr4:89248169-89248188 None:intergenic 25.0%
! ACTATAAAACTATGAACCAT+GGG + Chr4:89243713-89243732 None:intergenic 25.0%
! AGCATCAAAATAAATACAGA+AGG + Chr4:89245423-89245442 None:intergenic 25.0%
! AGCTTAATAGCTAACAAATA+TGG - Chr4:89244597-89244616 MsG0480023738.01.T01:intron 25.0%
! AGGATTATAAATGACAACAT+TGG - Chr4:89245092-89245111 MsG0480023738.01.T01:intron 25.0%
! AGTAACAAAATAAAGGAGAA+AGG + Chr4:89242585-89242604 None:intergenic 25.0%
! ATCATCAAGTCAAAATACTT+AGG + Chr4:89245696-89245715 None:intergenic 25.0%
! ATGTAAAAAAGAAAAAGGGA+GGG + Chr4:89248055-89248074 None:intergenic 25.0%
! ATGTAGTATTCTATGATGTA+GGG - Chr4:89247939-89247958 MsG0480023738.01.T01:intron 25.0%
! CAAATGGAAAATGTGAATAA+AGG + Chr4:89248315-89248334 None:intergenic 25.0%
! CCACGTTATCTTTATAAATA+AGG + Chr4:89244380-89244399 None:intergenic 25.0%
! CGTAACCATACTAATATATT+TGG + Chr4:89246805-89246824 None:intergenic 25.0%
! GAAAGCCAAATATATTAGTA+TGG - Chr4:89246797-89246816 MsG0480023738.01.T01:intron 25.0%
! GAAATATATACAGGGAAATT+AGG - Chr4:89243465-89243484 MsG0480023738.01.T01:intron 25.0%
! GGAAATAATATTTGAATGGT+AGG - Chr4:89243517-89243536 MsG0480023738.01.T01:CDS 25.0%
! GGAACAACTAATATTTCAAT+TGG + Chr4:89245402-89245421 None:intergenic 25.0%
! GTAACAAAATAAAGGAGAAA+GGG + Chr4:89242584-89242603 None:intergenic 25.0%
! TAACCAAACAACTTAGTATT+GGG - Chr4:89246256-89246275 MsG0480023738.01.T01:intron 25.0%
! TAAGAATAAGAATAAGACAG+GGG - Chr4:89242411-89242430 MsG0480023738.01.T01:three_prime_UTR 25.0%
! TAGAAAATATTGTGGAAACT+AGG - Chr4:89245139-89245158 MsG0480023738.01.T01:intron 25.0%
! TAGAATTTGTATAGAATAGC+TGG - Chr4:89243357-89243376 MsG0480023738.01.T01:CDS 25.0%
! TAGATTCCTATACACAATAA+AGG + Chr4:89245749-89245768 None:intergenic 25.0%
! TATCTATTTATTTACCTGAC+TGG - Chr4:89247213-89247232 MsG0480023738.01.T01:intron 25.0%
! TCATCAAGTCAAAATACTTA+GGG + Chr4:89245695-89245714 None:intergenic 25.0%
! TGCTTTACTCTTAATATCTT+GGG - Chr4:89245509-89245528 MsG0480023738.01.T01:intron 25.0%
! TTAATTAATGCAAAGAAGCT+AGG - Chr4:89246158-89246177 MsG0480023738.01.T01:intron 25.0%
! TTACACGGTTTAAATATCTT+GGG - Chr4:89244811-89244830 MsG0480023738.01.T01:intron 25.0%
! TTATCATTGTGACATACTAA+AGG + Chr4:89244468-89244487 None:intergenic 25.0%
! TTCAACAATGCAAATTCAAA+GGG + Chr4:89243065-89243084 None:intergenic 25.0%
! TTCTATAGATACAAGAAACT+TGG - Chr4:89248757-89248776 MsG0480023738.01.T01:intron 25.0%
! TTTCAAAAAAGACAAACTTC+AGG + Chr4:89243815-89243834 None:intergenic 25.0%
!! ATAATTGCTGTTCATTTGAA+TGG - Chr4:89243251-89243270 MsG0480023738.01.T01:CDS 25.0%
!! CAGTTTTCTTGCATTTAATT+AGG - Chr4:89247767-89247786 MsG0480023738.01.T01:intron 25.0%
!! CATATATTTCTGCTTGAAAA+AGG - Chr4:89248794-89248813 MsG0480023738.01.T01:intron 25.0%
!! CCTTATTTATAAAGATAACG+TGG - Chr4:89244377-89244396 MsG0480023738.01.T01:intron 25.0%
!! CTTTATTCACATTTTCCATT+TGG - Chr4:89248313-89248332 MsG0480023738.01.T01:intron 25.0%
!! TCCACAATATTTTCTACTAT+AGG + Chr4:89245135-89245154 None:intergenic 25.0%
!!! ATTTAATTAGGCTTTGAACT+CGG - Chr4:89247779-89247798 MsG0480023738.01.T01:intron 25.0%
!!! CGCTTAATTTATTTTCTTGT+TGG + Chr4:89245022-89245041 None:intergenic 25.0%
!!! TACTGAAACAATAGCTTTAT+AGG + Chr4:89244512-89244531 None:intergenic 25.0%
!!! TCTTGGGTATGATTATTTTA+TGG - Chr4:89245525-89245544 MsG0480023738.01.T01:intron 25.0%
!!! TGCATTTTTTAACGAAATCT+AGG + Chr4:89246769-89246788 None:intergenic 25.0%
AACAACTCCAATATATCTTC+TGG + Chr4:89247975-89247994 None:intergenic 30.0%
AAGTCAAAATAATAGAGGTC+AGG + Chr4:89245341-89245360 None:intergenic 30.0%
AATATTATCTGATCCTGTGT+TGG + Chr4:89245458-89245477 None:intergenic 30.0%
AATGAAGGAAAAAAGATACG+AGG - Chr4:89248507-89248526 MsG0480023738.01.T01:intron 30.0%
ACAAGCAATGTTGTCAATAA+CGG + Chr4:89246527-89246546 None:intergenic 30.0%
ACAGTCTTAATAGATAGCAA+GGG + Chr4:89247522-89247541 None:intergenic 30.0%
ACATACCCAAACAACATATT+TGG - Chr4:89243670-89243689 MsG0480023738.01.T01:intron 30.0%
AGATATTAAGAGTAAAGCAG+TGG + Chr4:89245508-89245527 None:intergenic 30.0%
AGATCTCAACACAGTTAAAA+GGG + Chr4:89247422-89247441 None:intergenic 30.0%
AGCACTTTAATGACAGAATA+TGG + Chr4:89246689-89246708 None:intergenic 30.0%
AGCTTACAATTCAAAGCAAA+AGG + Chr4:89245844-89245863 None:intergenic 30.0%
ATATACAGGGAAATTAGGAA+AGG - Chr4:89243470-89243489 MsG0480023738.01.T01:intron 30.0%
ATATTCTGACTTCTGATTCT+TGG - Chr4:89245554-89245573 MsG0480023738.01.T01:intron 30.0%
ATCTTACTCTTACACATATG+TGG - Chr4:89246733-89246752 MsG0480023738.01.T01:intron 30.0%
ATGGAAAATGTGAATAAAGG+TGG + Chr4:89248312-89248331 None:intergenic 30.0%
CAATTCTGCTTACTTAAGAA+TGG - Chr4:89245908-89245927 MsG0480023738.01.T01:intron 30.0%
CACTTTAATGACAGAATATG+GGG + Chr4:89246687-89246706 None:intergenic 30.0%
CATGTAGTATTCTATGATGT+AGG - Chr4:89247938-89247957 MsG0480023738.01.T01:intron 30.0%
CTAACCAAACAACTTAGTAT+TGG - Chr4:89246255-89246274 MsG0480023738.01.T01:intron 30.0%
CTACATGAATCACTAAACAA+AGG + Chr4:89247925-89247944 None:intergenic 30.0%
CTATATGGGTCAAATAGAAT+TGG - Chr4:89244179-89244198 MsG0480023738.01.T01:intron 30.0%
CTGCTTTACTCTTAATATCT+TGG - Chr4:89245508-89245527 MsG0480023738.01.T01:intron 30.0%
CTTCAACAATGCAAATTCAA+AGG + Chr4:89243066-89243085 None:intergenic 30.0%
GACCAAAGAAAACTACTATA+TGG + Chr4:89243992-89244011 None:intergenic 30.0%
GACTATAAAACTATGAACCA+TGG + Chr4:89243714-89243733 None:intergenic 30.0%
GATTAGGTTAATCAAACATC+TGG - Chr4:89245580-89245599 MsG0480023738.01.T01:CDS 30.0%
GATTATATATTTATCGCTGC+AGG - Chr4:89248099-89248118 MsG0480023738.01.T01:intron 30.0%
GCACTTTAATGACAGAATAT+GGG + Chr4:89246688-89246707 None:intergenic 30.0%
GCTAATAGTGAAAAGATCAA+CGG - Chr4:89243561-89243580 MsG0480023738.01.T01:CDS 30.0%
GTATTTCCATTTGATTATGG+TGG - Chr4:89246661-89246680 MsG0480023738.01.T01:intron 30.0%
GTGGTAAAATTAGACAAGAT+AGG - Chr4:89245072-89245091 MsG0480023738.01.T01:intron 30.0%
GTTACACGGTTTAAATATCT+TGG - Chr4:89244810-89244829 MsG0480023738.01.T01:intron 30.0%
TAAACCAAGTTAACCTTTGT+AGG - Chr4:89244710-89244729 MsG0480023738.01.T01:intron 30.0%
TAAACCATGGAATTTAAGCT+GGG - Chr4:89244876-89244895 MsG0480023738.01.T01:intron 30.0%
TAACATTACCTCTGGTAAAT+AGG + Chr4:89247873-89247892 None:intergenic 30.0%
TACGAACCAAATATGTTGTT+TGG + Chr4:89243679-89243698 None:intergenic 30.0%
TAGGCAAATAGCTAAATGTA+TGG - Chr4:89246921-89246940 MsG0480023738.01.T01:intron 30.0%
TATACAGGGAAATTAGGAAA+GGG - Chr4:89243471-89243490 MsG0480023738.01.T01:intron 30.0%
TATCTATTAAGACTGTGTGA+TGG - Chr4:89247526-89247545 MsG0480023738.01.T01:intron 30.0%
TATTTAAACCGTGTAACTTG+TGG + Chr4:89244807-89244826 None:intergenic 30.0%
TATTTGAATGGTAGGAAATG+CGG - Chr4:89243525-89243544 MsG0480023738.01.T01:CDS 30.0%
TGCACATTGTTGTCAAATAA+CGG - Chr4:89246356-89246375 MsG0480023738.01.T01:intron 30.0%
TGGAAAATGTGAATAAAGGT+GGG + Chr4:89248311-89248330 None:intergenic 30.0%
TGGTATTTGATAGAACACTA+TGG - Chr4:89245231-89245250 MsG0480023738.01.T01:intron 30.0%
TGTGTAAGAGTAAGATCATA+TGG + Chr4:89246729-89246748 None:intergenic 30.0%
TGTGTGTCTATTATGGATAT+TGG - Chr4:89244348-89244367 MsG0480023738.01.T01:CDS 30.0%
TGTTTCAGTATATTACTTGC+AGG - Chr4:89244522-89244541 MsG0480023738.01.T01:intron 30.0%
TTCAAAGTTTCATGTCTTGT+AGG - Chr4:89248429-89248448 MsG0480023738.01.T01:CDS 30.0%
TTCTTTAACTGGTATAACTC+CGG + Chr4:89248988-89249007 None:intergenic 30.0%
TTGCCAAGTCAAAATAATAG+AGG + Chr4:89245346-89245365 None:intergenic 30.0%
TTGCTAATGAGTACAATACT+TGG - Chr4:89248401-89248420 MsG0480023738.01.T01:CDS 30.0%
! ACAAATTTGCTTTCTAGTAC+TGG - Chr4:89248359-89248378 MsG0480023738.01.T01:intron 30.0%
! ACGAACCAAATATGTTGTTT+GGG + Chr4:89243678-89243697 None:intergenic 30.0%
! CAACATATTTGGTTCGTATT+TGG - Chr4:89243681-89243700 MsG0480023738.01.T01:intron 30.0%
! CACATTTTCCATTTGGTATA+CGG - Chr4:89248320-89248339 MsG0480023738.01.T01:intron 30.0%
! TAAAAGAATCTACTTGCTGA+CGG + Chr4:89248013-89248032 None:intergenic 30.0%
! TCCCATATAGTAGTTTTCTT+TGG - Chr4:89243987-89244006 MsG0480023738.01.T01:intron 30.0%
! TCTACTATGGTGTTTCTAAT+GGG - Chr4:89244065-89244084 MsG0480023738.01.T01:CDS 30.0%
! TCTGTTCTGATTTGTAATGT+AGG + Chr4:89243439-89243458 None:intergenic 30.0%
! TTCAAGTCAAATTTTAAGCC+AGG - Chr4:89242813-89242832 MsG0480023738.01.T01:intron 30.0%
! TTCTGATTCTTGGTTTGATT+AGG - Chr4:89245564-89245583 MsG0480023738.01.T01:intron 30.0%
!! AGAACTTGATTTGCAAAAAC+AGG - Chr4:89243330-89243349 MsG0480023738.01.T01:intron 30.0%
!! ATGACAGAAAATTTTGATGC+TGG - Chr4:89246843-89246862 MsG0480023738.01.T01:intron 30.0%
!! ATTTTCTGAGAATTCCTACT+TGG - Chr4:89248533-89248552 MsG0480023738.01.T01:intron 30.0%
!! TGGCTTAAAATTTGACTTGA+AGG + Chr4:89242814-89242833 None:intergenic 30.0%
!! TTTGTTATTTATCGGGATGT+TGG - Chr4:89243636-89243655 MsG0480023738.01.T01:intron 30.0%
!!! ACAAGAAACTTGGTTTTTTG+TGG - Chr4:89248767-89248786 MsG0480023738.01.T01:intron 30.0%
!!! TGACCTCTATTATTTTGACT+TGG - Chr4:89245340-89245359 MsG0480023738.01.T01:intron 30.0%
!!! TTCATAGTTTTATAGTCCCT+TGG - Chr4:89243717-89243736 MsG0480023738.01.T01:intron 30.0%
!!! TTGTCTTTTCTAGAACAAAC+TGG + Chr4:89244404-89244423 None:intergenic 30.0%
AAAACTGTATCCCATGATGA+GGG - Chr4:89247660-89247679 MsG0480023738.01.T01:intron 35.0%
AAAATACTTAGGGAGACAAG+TGG + Chr4:89245685-89245704 None:intergenic 35.0%
AAAATGTGAATAAAGGTGGG+AGG + Chr4:89248308-89248327 None:intergenic 35.0%
AAATGTCACTAGAGGGAAAA+AGG - Chr4:89242939-89242958 MsG0480023738.01.T01:intron 35.0%
AACTTCATATTTCGCACTCT+AGG - Chr4:89242547-89242566 MsG0480023738.01.T01:three_prime_UTR 35.0%
AAGGAGAGATACTTACCTAA+TGG + Chr4:89245825-89245844 None:intergenic 35.0%
AATAAGAATAAGACAGGGGT+CGG - Chr4:89242415-89242434 MsG0480023738.01.T01:three_prime_UTR 35.0%
AATGTCACTAGAGGGAAAAA+GGG - Chr4:89242940-89242959 MsG0480023738.01.T01:intron 35.0%
ACTGTCTCGTACAACATTAT+CGG + Chr4:89244981-89245000 None:intergenic 35.0%
ACTTCATATTTCGCACTCTA+GGG - Chr4:89242548-89242567 MsG0480023738.01.T01:three_prime_UTR 35.0%
ACTTGGATCAATTCCAAACT+GGG + Chr4:89248152-89248171 None:intergenic 35.0%
AGAGAGAGAGAGAGTTAATA+AGG + Chr4:89244323-89244342 None:intergenic 35.0%
AGATATGCAATGCACTAGTA+AGG + Chr4:89247198-89247217 None:intergenic 35.0%
AGATCAACGGTATAGACAAA+AGG - Chr4:89243574-89243593 MsG0480023738.01.T01:CDS 35.0%
AGCTGCTATGACATAAAAGA+TGG + Chr4:89244128-89244147 None:intergenic 35.0%
AGGCTTACACGTTAATAGAA+AGG + Chr4:89245868-89245887 None:intergenic 35.0%
AGGTTAATCAAACATCTGGA+AGG - Chr4:89245584-89245603 MsG0480023738.01.T01:CDS 35.0%
ATACAGGGAAATTAGGAAAG+GGG - Chr4:89243472-89243491 MsG0480023738.01.T01:intron 35.0%
ATAGAAGGAGATGTAAACCA+TGG - Chr4:89244863-89244882 MsG0480023738.01.T01:intron 35.0%
ATAGAGTGAGTGTGTTTCAA+AGG + Chr4:89244163-89244182 None:intergenic 35.0%
ATATTGTGGAAACTAGGCTT+AGG - Chr4:89245145-89245164 MsG0480023738.01.T01:intron 35.0%
ATCAATGGCAATATCAGATC+AGG + Chr4:89247818-89247837 None:intergenic 35.0%
ATCAGATAATATTCCGAACG+AGG - Chr4:89245465-89245484 MsG0480023738.01.T01:intron 35.0%
ATCATGTCAATAAGCCAAGT+AGG + Chr4:89248550-89248569 None:intergenic 35.0%
ATCTTCTGGTCCAGTTAAAT+TGG - Chr4:89247319-89247338 MsG0480023738.01.T01:intron 35.0%
ATGACAGAAAGTTCTTCTTC+TGG - Chr4:89245632-89245651 MsG0480023738.01.T01:intron 35.0%
ATTAGTATGGTTACGTACAC+AGG - Chr4:89246810-89246829 MsG0480023738.01.T01:intron 35.0%
CAAAGATGAAGATGTTGAGT+TGG - Chr4:89245045-89245064 MsG0480023738.01.T01:intron 35.0%
CAATGTTGCTCAATATTCTC+TGG + Chr4:89247352-89247371 None:intergenic 35.0%
CACAGTCTTAATAGATAGCA+AGG + Chr4:89247523-89247542 None:intergenic 35.0%
CAGAGAATATTGAGCAACAT+TGG - Chr4:89247350-89247369 MsG0480023738.01.T01:intron 35.0%
CAGATCTCAACACAGTTAAA+AGG + Chr4:89247423-89247442 None:intergenic 35.0%
CATTCCATAGTGCTAAACAA+CGG - Chr4:89244836-89244855 MsG0480023738.01.T01:intron 35.0%
CATTGGTATAACATTACCTC+TGG + Chr4:89247881-89247900 None:intergenic 35.0%
CCTATACACAATAAAGGTTC+AGG + Chr4:89245743-89245762 None:intergenic 35.0%
CCTGAACCTTTATTGTGTAT+AGG - Chr4:89245740-89245759 MsG0480023738.01.T01:CDS 35.0%
CTAAACAACGGAGAAATAGA+AGG - Chr4:89244848-89244867 MsG0480023738.01.T01:intron 35.0%
GAAACACACTCACTCTATAT+GGG - Chr4:89244165-89244184 MsG0480023738.01.T01:intron 35.0%
GAATATCCAAACTAAGTACC+TGG + Chr4:89247093-89247112 None:intergenic 35.0%
GATATGCAATGCACTAGTAA+GGG + Chr4:89247197-89247216 None:intergenic 35.0%
GGTTAATCAAACATCTGGAA+GGG - Chr4:89245585-89245604 MsG0480023738.01.T01:CDS 35.0%
GTAAACCATGGAATTTAAGC+TGG - Chr4:89244875-89244894 MsG0480023738.01.T01:intron 35.0%
GTACCCAATACTAAGTTGTT+TGG + Chr4:89246262-89246281 None:intergenic 35.0%
GTATCCTACAAAGGTTAACT+TGG + Chr4:89244717-89244736 None:intergenic 35.0%
GTATCTTCAGAAACTTCAAG+CGG + Chr4:89247050-89247069 None:intergenic 35.0%
GTCATATACCACAAGTTACA+CGG - Chr4:89244796-89244815 MsG0480023738.01.T01:intron 35.0%
GTTAGAAGTGAACAAGTGTT+GGG - Chr4:89244622-89244641 MsG0480023738.01.T01:intron 35.0%
TAAAAGATGGTACTCGTCTT+AGG + Chr4:89244115-89244134 None:intergenic 35.0%
TACTCAACTCAATTCGATGA+TGG + Chr4:89242508-89242527 None:intergenic 35.0%
TACTTGGATCAATTCCAAAC+TGG + Chr4:89248153-89248172 None:intergenic 35.0%
TAGAGTGAGTGTGTTTCAAA+GGG + Chr4:89244162-89244181 None:intergenic 35.0%
TAGAGTGCGAAATATGAAGT+TGG + Chr4:89242548-89242567 None:intergenic 35.0%
TATATTACTTGCAGGACCTA+TGG - Chr4:89244530-89244549 MsG0480023738.01.T01:intron 35.0%
TATGCCTTCTGTGTGAATTT+AGG + Chr4:89244690-89244709 None:intergenic 35.0%
TATTTATCGGGATGTTGGTA+CGG - Chr4:89243641-89243660 MsG0480023738.01.T01:intron 35.0%
TCAAAGGGATGTTAAAAGCA+AGG + Chr4:89243050-89243069 None:intergenic 35.0%
TCATTGTGACATACTAAAGG+AGG + Chr4:89244465-89244484 None:intergenic 35.0%
TCTTAAGTAAGCAGAATTGC+AGG + Chr4:89245907-89245926 None:intergenic 35.0%
TGAAACACACTCACTCTATA+TGG - Chr4:89244164-89244183 MsG0480023738.01.T01:intron 35.0%
TGACTCATCGTAGAATTGAT+AGG - Chr4:89243303-89243322 MsG0480023738.01.T01:intron 35.0%
TGATCTGATATTGCCATTGA+TGG - Chr4:89247817-89247836 MsG0480023738.01.T01:intron 35.0%
TGGTTTCAGTAAACTGCAAA+AGG + Chr4:89242623-89242642 None:intergenic 35.0%
TGTAATGTAGGAGTGGTTAT+AGG + Chr4:89243427-89243446 None:intergenic 35.0%
TGTACCTAAATTCACACAGA+AGG - Chr4:89244683-89244702 MsG0480023738.01.T01:intron 35.0%
TGTGTTTCAAAGGGTAAGTT+GGG + Chr4:89244153-89244172 None:intergenic 35.0%
TGTTAGAAGTGAACAAGTGT+TGG - Chr4:89244621-89244640 MsG0480023738.01.T01:intron 35.0%
TGTTTGAACGTATCCTACAA+AGG + Chr4:89244726-89244745 None:intergenic 35.0%
TTGGTCTCCAGAAGATATAT+TGG - Chr4:89247965-89247984 MsG0480023738.01.T01:intron 35.0%
TTTCATGTCTTGTAGGTTTC+AGG - Chr4:89248436-89248455 MsG0480023738.01.T01:CDS 35.0%
! AATTTTAAGCCAGGAAGATC+TGG - Chr4:89242822-89242841 MsG0480023738.01.T01:intron 35.0%
! ATTCTATGATGTAGGGTACT+TGG - Chr4:89247946-89247965 MsG0480023738.01.T01:intron 35.0%
! ATTTTAAGCCAGGAAGATCT+GGG - Chr4:89242823-89242842 MsG0480023738.01.T01:intron 35.0%
! CTCTACTATGGTGTTTCTAA+TGG - Chr4:89244064-89244083 MsG0480023738.01.T01:CDS 35.0%
! GATGCTGGTAACCTTTTATT+TGG - Chr4:89246858-89246877 MsG0480023738.01.T01:intron 35.0%
! GCTTGAAGTTTCTGAAGATA+CGG - Chr4:89247049-89247068 MsG0480023738.01.T01:intron 35.0%
! TAACATGCAACAGAGCATTA+TGG + Chr4:89243924-89243943 None:intergenic 35.0%
! TCTGATTTGTAATGTAGGAG+TGG + Chr4:89243434-89243453 None:intergenic 35.0%
!! ATTTGACTTGAAGGTTACAG+TGG + Chr4:89242805-89242824 None:intergenic 35.0%
!! GGTTTGTTATGTCTATTGAC+AGG - Chr4:89242889-89242908 MsG0480023738.01.T01:intron 35.0%
!! GTTCACAGTTTTGTCTTTTC+TGG - Chr4:89248612-89248631 MsG0480023738.01.T01:intron 35.0%
!! TTTGCCTATGTCACTTTGAA+AGG + Chr4:89246909-89246928 None:intergenic 35.0%
!!! AAGTGGTTGTTTTTGTCTCA+GGG - Chr4:89243144-89243163 MsG0480023738.01.T01:intron 35.0%
!!! TTTTTTTCACAAAGTGGGGT+TGG - Chr4:89243882-89243901 MsG0480023738.01.T01:intron 35.0%
AAACTGTATCCCATGATGAG+GGG - Chr4:89247661-89247680 MsG0480023738.01.T01:intron 40.0%
AAAGTTCTTCTTCTGGATGC+AGG - Chr4:89245639-89245658 MsG0480023738.01.T01:intron 40.0%
AAATATGAAGTTGGAGTCGG+AGG + Chr4:89242539-89242558 None:intergenic 40.0%
AAGCTGGGTGGTTAAAATAG+AGG - Chr4:89244891-89244910 MsG0480023738.01.T01:intron 40.0%
AATATCCGATGTCTCTCAGA+AGG - Chr4:89248918-89248937 MsG0480023738.01.T01:five_prime_UTR 40.0%
AATGTTGTCAATAACGGTCG+TGG + Chr4:89246521-89246540 None:intergenic 40.0%
ACTAGCGATGTAACATCTTC+TGG - Chr4:89247305-89247324 MsG0480023738.01.T01:intron 40.0%
ACTTACCTAATGGTCTGTTG+AGG + Chr4:89245815-89245834 None:intergenic 40.0%
AGATGGAGGAAATGTTGGAT+CGG + Chr4:89244038-89244057 None:intergenic 40.0%
AGTAAACTGCAAAAGGAGCA+AGG + Chr4:89242616-89242635 None:intergenic 40.0%
ATACTAAAGGAGGAAAGTGG+AGG + Chr4:89244455-89244474 None:intergenic 40.0%
ATACTAATGCCCCTCATCAT+GGG + Chr4:89247673-89247692 None:intergenic 40.0%
ATCTCAATCTTGTACCCCAA+TGG - Chr4:89248696-89248715 MsG0480023738.01.T01:intron 40.0%
ATGACAACATTGGAGAGAGT+TGG - Chr4:89245102-89245121 MsG0480023738.01.T01:intron 40.0%
ATGTTGTCAATAACGGTCGT+GGG + Chr4:89246520-89246539 None:intergenic 40.0%
ATTGATGGAGACGTTACCAT+TGG - Chr4:89247832-89247851 MsG0480023738.01.T01:intron 40.0%
ATTTATCGGGATGTTGGTAC+GGG - Chr4:89243642-89243661 MsG0480023738.01.T01:intron 40.0%
CAAAACTGTATCCCATGATG+AGG - Chr4:89247659-89247678 MsG0480023738.01.T01:intron 40.0%
CAATGCACTAGTAAGGGATT+TGG + Chr4:89247191-89247210 None:intergenic 40.0%
CAGATAGATTTGTCCCAGTT+TGG - Chr4:89248136-89248155 MsG0480023738.01.T01:intron 40.0%
CCACTTCAACTAAAAACCAG+CGG + Chr4:89243130-89243149 None:intergenic 40.0%
CGAAAAGTCAATCGCTACAT+TGG + Chr4:89247898-89247917 None:intergenic 40.0%
CGTTGTTTAGCACTATGGAA+TGG + Chr4:89244838-89244857 None:intergenic 40.0%
CTACTTGGATTCATCCATTG+GGG + Chr4:89248713-89248732 None:intergenic 40.0%
CTCCAATCTAGTGTGTTGTA+GGG - Chr4:89248270-89248289 MsG0480023738.01.T01:intron 40.0%
CTCTCGTTGTGTGTCTATTA+TGG - Chr4:89244341-89244360 MsG0480023738.01.T01:CDS 40.0%
CTGTGTGAATTTAGGTACAG+TGG + Chr4:89244682-89244701 None:intergenic 40.0%
GACATACTAAAGGAGGAAAG+TGG + Chr4:89244458-89244477 None:intergenic 40.0%
GAGATTATTACCTGGATTGC+AGG + Chr4:89242674-89242693 None:intergenic 40.0%
GATGTCTCTCAGAAGGTTAT+GGG - Chr4:89248925-89248944 MsG0480023738.01.T01:five_prime_UTR 40.0%
GATTACCTCAACAGACCATT+AGG - Chr4:89245807-89245826 MsG0480023738.01.T01:intron 40.0%
GCAACCTTTCAAAGTGACAT+AGG - Chr4:89246902-89246921 MsG0480023738.01.T01:intron 40.0%
GCATTAGTATGCAGTTTGAC+GGG - Chr4:89247683-89247702 MsG0480023738.01.T01:intron 40.0%
GCGAAATATGAAGTTGGAGT+CGG + Chr4:89242542-89242561 None:intergenic 40.0%
GCTACTTGGATTCATCCATT+GGG + Chr4:89248714-89248733 None:intergenic 40.0%
GCTGGTAAAATGTCACTAGA+GGG - Chr4:89242932-89242951 MsG0480023738.01.T01:intron 40.0%
GGCATTAGTATGCAGTTTGA+CGG - Chr4:89247682-89247701 MsG0480023738.01.T01:intron 40.0%
GTGTGTTTCAAAGGGTAAGT+TGG + Chr4:89244154-89244173 None:intergenic 40.0%
GTGTTTCAAAGGGTAAGTTG+GGG + Chr4:89244152-89244171 None:intergenic 40.0%
TATCCAGTGCAAGTACATAC+CGG + Chr4:89246295-89246314 None:intergenic 40.0%
TCTCATCCAGGTACTTAGTT+TGG - Chr4:89247084-89247103 MsG0480023738.01.T01:intron 40.0%
TCTCCAATCTAGTGTGTTGT+AGG - Chr4:89248269-89248288 MsG0480023738.01.T01:intron 40.0%
TGACAACATTGGAGAGAGTT+GGG - Chr4:89245103-89245122 MsG0480023738.01.T01:intron 40.0%
TGCTCAAAAATAGCCTCGTT+CGG + Chr4:89245481-89245500 None:intergenic 40.0%
TGCTGGTAAAATGTCACTAG+AGG - Chr4:89242931-89242950 MsG0480023738.01.T01:intron 40.0%
TGGAGATCTGCCAATTTAAC+TGG + Chr4:89247332-89247351 None:intergenic 40.0%
TGTAACTTATTACCTGCAGC+AGG + Chr4:89247377-89247396 None:intergenic 40.0%
TGTTGGATCGGTCAAATAGT+TGG + Chr4:89244026-89244045 None:intergenic 40.0%
TTAACTGGTATAACTCCGGA+TGG + Chr4:89248984-89249003 None:intergenic 40.0%
TTCAGAAACTTCAAGCGGAA+GGG + Chr4:89247045-89247064 None:intergenic 40.0%
TTCCAACTTTCACAAAGTGC+AGG + Chr4:89244771-89244790 None:intergenic 40.0%
TTCCATTTGGTATACGGTAG+AGG - Chr4:89248326-89248345 MsG0480023738.01.T01:intron 40.0%
TTCCTGCACTTTGTGAAAGT+TGG - Chr4:89244766-89244785 MsG0480023738.01.T01:intron 40.0%
TTCTCCGTTGTTTAGCACTA+TGG + Chr4:89244843-89244862 None:intergenic 40.0%
TTGAAGATGACATCTCATCC+AGG - Chr4:89247072-89247091 MsG0480023738.01.T01:intron 40.0%
! AATGGTAACGTCTCCATCAA+TGG + Chr4:89247833-89247852 None:intergenic 40.0%
! AGCGTGTTACTCTTTACTTC+TGG + Chr4:89246969-89246988 None:intergenic 40.0%
! CAAACTTTTAGTGTCCAGTC+AGG + Chr4:89247230-89247249 None:intergenic 40.0%
! CAACAGAGCATTATGGCATA+TGG + Chr4:89243917-89243936 None:intergenic 40.0%
! CAGTACTTTTGTGTCACATG+AGG + Chr4:89244921-89244940 None:intergenic 40.0%
! CATAACCTTCTGAGAGACAT+CGG + Chr4:89248926-89248945 None:intergenic 40.0%
! TCTAGCTTCCTATTTACCAG+AGG - Chr4:89247862-89247881 MsG0480023738.01.T01:intron 40.0%
! TTAGGTGATTCGGAAATGTG+TGG + Chr4:89244097-89244116 None:intergenic 40.0%
! TTTGCTTTCTAGTACTGGAG+TGG - Chr4:89248364-89248383 MsG0480023738.01.T01:intron 40.0%
!! AAAGTACTGCTCAAGCTGAA+TGG - Chr4:89244932-89244951 MsG0480023738.01.T01:intron 40.0%
!! AAGATGTTGAGTTGGATGTG+TGG - Chr4:89245053-89245072 MsG0480023738.01.T01:intron 40.0%
!! CACAGTTTTGTCTTTTCTGG+AGG - Chr4:89248615-89248634 MsG0480023738.01.T01:intron 40.0%
!!! AGGGACTAGTTCATTTTCAG+TGG - Chr4:89243172-89243191 MsG0480023738.01.T01:intron 40.0%
!!! CTGATTCTTTGTTTTCCCCT+TGG - Chr4:89248582-89248601 MsG0480023738.01.T01:intron 40.0%
!!! GAAGTGGTTGTTTTTGTCTC+AGG - Chr4:89243143-89243162 MsG0480023738.01.T01:intron 40.0%
AAACAGACTCACGCATCTGT+AGG + Chr4:89246065-89246084 None:intergenic 45.0%
AAAGATGAAAGTAGCCTGCC+AGG + Chr4:89248736-89248755 None:intergenic 45.0%
AACTGTGAACTTGTCTGCCA+AGG + Chr4:89248602-89248621 None:intergenic 45.0%
AACTTGGTTGTCCCGAACTT+TGG - Chr4:89247272-89247291 MsG0480023738.01.T01:intron 45.0%
AATAGAGGTCAGGAAAGAGC+AGG + Chr4:89245331-89245350 None:intergenic 45.0%
ACCACCCAGCTTAAATTCCA+TGG + Chr4:89244883-89244902 None:intergenic 45.0%
ACCATGGAATTTAAGCTGGG+TGG - Chr4:89244879-89244898 MsG0480023738.01.T01:intron 45.0%
ACTGTGAACTTGTCTGCCAA+GGG + Chr4:89248601-89248620 None:intergenic 45.0%
AGCATTCTTGATCCTGACGA+AGG - Chr4:89247472-89247491 MsG0480023738.01.T01:intron 45.0%
AGCCTCTACCGTATACCAAA+TGG + Chr4:89248331-89248350 None:intergenic 45.0%
AGGACCTATGGAAACTGTTG+GGG - Chr4:89244542-89244561 MsG0480023738.01.T01:intron 45.0%
ATGGATGAATCCAAGTAGCC+TGG - Chr4:89248715-89248734 MsG0480023738.01.T01:CDS 45.0%
ATGGGGCCACCATAATCAAA+TGG + Chr4:89246670-89246689 None:intergenic 45.0%
CAGGACCTATGGAAACTGTT+GGG - Chr4:89244541-89244560 MsG0480023738.01.T01:intron 45.0%
CATACTAATGCCCCTCATCA+TGG + Chr4:89247674-89247693 None:intergenic 45.0%
CATCAGGTTCTTCTTCACCA+AGG + Chr4:89247019-89247038 None:intergenic 45.0%
CCATAGTAGAGTTGAGCAGA+TGG + Chr4:89244055-89244074 None:intergenic 45.0%
CCATCTGCTCAACTCTACTA+TGG - Chr4:89244052-89244071 MsG0480023738.01.T01:CDS 45.0%
CGAAGCGAAAGTGAAAGTGA+GGG + Chr4:89242478-89242497 None:intergenic 45.0%
CGATGGAAGATGAACTCATC+TGG + Chr4:89242643-89242662 None:intergenic 45.0%
CGATGTCTCTCAGAAGGTTA+TGG - Chr4:89248924-89248943 MsG0480023738.01.T01:five_prime_UTR 45.0%
CGGTCAAATAGTTGGAGGTA+GGG + Chr4:89244018-89244037 None:intergenic 45.0%
CTATTGACAGGAAACTCTCC+TGG - Chr4:89242901-89242920 MsG0480023738.01.T01:intron 45.0%
CTTCAGAAACTTCAAGCGGA+AGG + Chr4:89247046-89247065 None:intergenic 45.0%
GAAACTAGGCTTAGGTGGTT+TGG - Chr4:89245153-89245172 MsG0480023738.01.T01:intron 45.0%
GACAACATTGGAGAGAGTTG+GGG - Chr4:89245104-89245123 MsG0480023738.01.T01:intron 45.0%
GGAATCTAGGCAAGATGATC+AGG - Chr4:89248666-89248685 MsG0480023738.01.T01:intron 45.0%
GGAGAAGTAACAACTACAGC+TGG + Chr4:89248254-89248273 None:intergenic 45.0%
GGCTACTTGGATTCATCCAT+TGG + Chr4:89248715-89248734 None:intergenic 45.0%
GGTACTCGTCTTAGGTGATT+CGG + Chr4:89244107-89244126 None:intergenic 45.0%
GTCCCTACAACACACTAGAT+TGG + Chr4:89248275-89248294 None:intergenic 45.0%
GTTGCATCCACACCAAAGTT+CGG + Chr4:89247287-89247306 None:intergenic 45.0%
GTTGGAAAGAGCTGCAAACT+TGG - Chr4:89247256-89247275 MsG0480023738.01.T01:intron 45.0%
GTTGTACGAGACAGTGTTCT+AGG - Chr4:89244986-89245005 MsG0480023738.01.T01:intron 45.0%
TAGTAGAGTTGAGCAGATGG+AGG + Chr4:89244052-89244071 None:intergenic 45.0%
TCCTGACGAAGGTAATCACT+TGG - Chr4:89247483-89247502 MsG0480023738.01.T01:intron 45.0%
TCGGTCAAATAGTTGGAGGT+AGG + Chr4:89244019-89244038 None:intergenic 45.0%
TCTCCAAGTCTGAGGAATCT+AGG - Chr4:89248653-89248672 MsG0480023738.01.T01:intron 45.0%
TGAGCAGATGGAGGAAATGT+TGG + Chr4:89244043-89244062 None:intergenic 45.0%
TGGATCGGTCAAATAGTTGG+AGG + Chr4:89244023-89244042 None:intergenic 45.0%
TTCTCACTAACAGAGCTCCT+TGG - Chr4:89246999-89247018 MsG0480023738.01.T01:intron 45.0%
TTCTTCTTCTGGATGCAGGT+TGG - Chr4:89245643-89245662 MsG0480023738.01.T01:intron 45.0%
TTCTTGACCTAAGCCAACAC+AGG - Chr4:89245442-89245461 MsG0480023738.01.T01:intron 45.0%
TTGCATCCACACCAAAGTTC+GGG + Chr4:89247286-89247305 None:intergenic 45.0%
TTGCCTAGATTCCTCAGACT+TGG + Chr4:89248659-89248678 None:intergenic 45.0%
TTGTGGAAACTAGGCTTAGG+TGG - Chr4:89245148-89245167 MsG0480023738.01.T01:intron 45.0%
! AAGCCTTGTCCTACTAAGTG+GGG + Chr4:89245280-89245299 None:intergenic 45.0%
! CAAGCCTTGTCCTACTAAGT+GGG + Chr4:89245281-89245300 None:intergenic 45.0%
! CTATATGTCGAGTTGCCATC+CGG - Chr4:89248966-89248985 MsG0480023738.01.T01:intron 45.0%
! GAATCTACTTGCTGACGGAA+AGG + Chr4:89248008-89248027 None:intergenic 45.0%
! TTTTACCAGCACGAAACTCC+AGG + Chr4:89242922-89242941 None:intergenic 45.0%
! TTTTTGTCTCAGGGTGAGGA+GGG - Chr4:89243153-89243172 MsG0480023738.01.T01:intron 45.0%
!! ATCTGATCCTGTGTTGGCTT+AGG + Chr4:89245452-89245471 None:intergenic 45.0%
!! TCGTATTTGGTGTGTTCCCA+TGG - Chr4:89243694-89243713 MsG0480023738.01.T01:intron 45.0%
!!! CCGCTGGTTTTTAGTTGAAG+TGG - Chr4:89243127-89243146 MsG0480023738.01.T01:intron 45.0%
!!! GAACGAGGCTATTTTTGAGC+AGG - Chr4:89245480-89245499 MsG0480023738.01.T01:intron 45.0%
!!! GTTGTTTTTGTCTCAGGGTG+AGG - Chr4:89243149-89243168 MsG0480023738.01.T01:intron 45.0%
!! AAAAAAAAAAAAAAAAAAGA+AGG - Chr4:89242380-89242399 MsG0480023738.01.T01:three_prime_UTR 5.0%
!! AAAAAAAAAAAAAAAAAGAA+GGG - Chr4:89242381-89242400 MsG0480023738.01.T01:three_prime_UTR 5.0%
AAGGACTCGTTCGCATTGCT+AGG - Chr4:89242981-89243000 MsG0480023738.01.T01:intron 50.0%
ACTTCCATCCCAGATCTTCC+TGG + Chr4:89242834-89242853 None:intergenic 50.0%
AGAATTGCAGGATCGTCCAC+TGG + Chr4:89245895-89245914 None:intergenic 50.0%
AGGACTCGTTCGCATTGCTA+GGG - Chr4:89242982-89243001 MsG0480023738.01.T01:intron 50.0%
ATGAATCCAAGTAGCCTGGC+AGG - Chr4:89248719-89248738 MsG0480023738.01.T01:CDS 50.0%
CAACCCCACTTAGTAGGACA+AGG - Chr4:89245274-89245293 MsG0480023738.01.T01:intron 50.0%
CACTGGATAAGCACCCTGTA+TGG - Chr4:89246306-89246325 MsG0480023738.01.T01:intron 50.0%
CCACTTAGTAGGACAAGGCT+TGG - Chr4:89245279-89245298 MsG0480023738.01.T01:intron 50.0%
CCTATGGAAACTGTTGGGGA+AGG - Chr4:89244546-89244565 MsG0480023738.01.T01:intron 50.0%
CCTTCCCCAACAGTTTCCAT+AGG + Chr4:89244549-89244568 None:intergenic 50.0%
CGCTCGCTCTTTGCGTTTAT+TGG - Chr4:89242723-89242742 MsG0480023738.01.T01:CDS 50.0%
CTAAAAACCAGCGGCAGTCA+TGG + Chr4:89243121-89243140 None:intergenic 50.0%
CTGTGAACTTGTCTGCCAAG+GGG + Chr4:89248600-89248619 None:intergenic 50.0%
CTTGTCCTACTAAGTGGGGT+TGG + Chr4:89245276-89245295 None:intergenic 50.0%
GCAGGACCTATGGAAACTGT+TGG - Chr4:89244540-89244559 MsG0480023738.01.T01:intron 50.0%
GCCAAGTGATTACCTTCGTC+AGG + Chr4:89247487-89247506 None:intergenic 50.0%
GCGAAGCGAAAGTGAAAGTG+AGG + Chr4:89242479-89242498 None:intergenic 50.0%
GGATTCTGTCTCCAAGTCTG+AGG - Chr4:89248645-89248664 MsG0480023738.01.T01:intron 50.0%
GTAGTTCCTGATGCACGCAA+AGG - Chr4:89242962-89242981 MsG0480023738.01.T01:intron 50.0%
TAAGCCAGGAAGATCTGGGA+TGG - Chr4:89242827-89242846 MsG0480023738.01.T01:intron 50.0%
TCAAGCGGAAGGGATACATC+AGG + Chr4:89247035-89247054 None:intergenic 50.0%
TGTAGCCAACCCCACTTAGT+AGG - Chr4:89245268-89245287 MsG0480023738.01.T01:intron 50.0%
TGTAGGTTTCAGGCGTGTGT+AGG - Chr4:89248446-89248465 MsG0480023738.01.T01:CDS 50.0%
! ACGTGTAAGCCTTATGCCAG+TGG - Chr4:89245876-89245895 MsG0480023738.01.T01:intron 50.0%
! CCAAGCCTTGTCCTACTAAG+TGG + Chr4:89245282-89245301 None:intergenic 50.0%
! CTACTTGCTGACGGAAAGGT+GGG + Chr4:89248004-89248023 None:intergenic 50.0%
! GTAGGACAAGGCTTGGTTGT+TGG - Chr4:89245286-89245305 MsG0480023738.01.T01:intron 50.0%
! GTTTTTGTCTCAGGGTGAGG+AGG - Chr4:89243152-89243171 MsG0480023738.01.T01:intron 50.0%
! TCTACTTGCTGACGGAAAGG+TGG + Chr4:89248005-89248024 None:intergenic 50.0%
!! AAGTACATACCGGCTCTACG+TGG + Chr4:89246285-89246304 None:intergenic 50.0%
!! AGTACATACCGGCTCTACGT+GGG + Chr4:89246284-89246303 None:intergenic 50.0%
!! AGTGGAGGAGTGTTGTTGCA+AGG + Chr4:89244440-89244459 None:intergenic 50.0%
!! GATTGCAGGAAAAGCGTCGA+TGG + Chr4:89242660-89242679 None:intergenic 50.0%
!! GTCTTTTCTGGAGGCTCTTG+AGG - Chr4:89248624-89248643 MsG0480023738.01.T01:intron 50.0%
!! GTGGAGGAGTGTTGTTGCAA+GGG + Chr4:89244439-89244458 None:intergenic 50.0%
!! TGGAGGAGTGTTGTTGCAAG+GGG + Chr4:89244438-89244457 None:intergenic 50.0%
AACTCAACCATGACTGCCGC+TGG - Chr4:89243111-89243130 MsG0480023738.01.T01:intron 55.0%
AAGTAGCCTGCCAGGCTACT+TGG + Chr4:89248728-89248747 None:intergenic 55.0%
ACGAGTCCTTTGCGTGCATC+AGG + Chr4:89242971-89242990 None:intergenic 55.0%
ACTCTCCTGGAGTTTCGTGC+TGG - Chr4:89242914-89242933 MsG0480023738.01.T01:intron 55.0%
AGCAACATTGGACCTGCTGC+AGG - Chr4:89247362-89247381 MsG0480023738.01.T01:intron 55.0%
ATTGGGTACCCACGTAGAGC+CGG - Chr4:89246273-89246292 MsG0480023738.01.T01:intron 55.0%
CAGGATCGTCCACTGGCATA+AGG + Chr4:89245888-89245907 None:intergenic 55.0%
GAAGCTAGACGCTGCTCCAA+TGG + Chr4:89247851-89247870 None:intergenic 55.0%
GAATAAGACAGGGGTCGGAG+CGG - Chr4:89242420-89242439 MsG0480023738.01.T01:three_prime_UTR 55.0%
GAGCCGGTATGTACTTGCAC+TGG - Chr4:89246289-89246308 MsG0480023738.01.T01:intron 55.0%
GGTTGTCCCGAACTTTGGTG+TGG - Chr4:89247277-89247296 MsG0480023738.01.T01:intron 55.0%
TCGCTGCAGGTACTTCGAAC+AGG - Chr4:89248112-89248131 MsG0480023738.01.T01:intron 55.0%
! CGACGCTTTTCCTGCAATCC+AGG - Chr4:89242661-89242680 MsG0480023738.01.T01:intron 55.0%
!! GGAGGAGTGTTGTTGCAAGG+GGG + Chr4:89244437-89244456 None:intergenic 55.0%
GAGCGAGCGAGCGAGCGAAA+AGG + Chr4:89242712-89242731 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 89242340 89249056 89242340 ID=MsG0480023738.01;Name=MsG0480023738.01
Chr4 mRNA 89242340 89249056 89242340 ID=MsG0480023738.01.T01;Parent=MsG0480023738.01;Name=MsG0480023738.01.T01;_AED=0.47;_eAED=0.48;_QI=111|0.83|0.84|1|0.83|0.76|13|324|287
Chr4 exon 89248714 89248766 89248714 ID=MsG0480023738.01.T01:exon:5020;Parent=MsG0480023738.01.T01
Chr4 exon 89248876 89248948 89248876 ID=MsG0480023738.01.T01:exon:5019;Parent=MsG0480023738.01.T01
Chr4 exon 89249033 89249056 89249033 ID=MsG0480023738.01.T01:exon:5018;Parent=MsG0480023738.01.T01
Chr4 five_prime_UTR 89249033 89249056 89249033 ID=MsG0480023738.01.T01:five_prime_utr;Parent=MsG0480023738.01.T01
Chr4 five_prime_UTR 89248876 89248948 89248876 ID=MsG0480023738.01.T01:five_prime_utr;Parent=MsG0480023738.01.T01
Chr4 five_prime_UTR 89248753 89248766 89248753 ID=MsG0480023738.01.T01:five_prime_utr;Parent=MsG0480023738.01.T01
Chr4 CDS 89248714 89248752 89248714 ID=MsG0480023738.01.T01:cds;Parent=MsG0480023738.01.T01
Chr4 CDS 89248393 89248485 89248393 ID=MsG0480023738.01.T01:cds;Parent=MsG0480023738.01.T01
Chr4 CDS 89245736 89245810 89245736 ID=MsG0480023738.01.T01:cds;Parent=MsG0480023738.01.T01
Chr4 CDS 89245568 89245634 89245568 ID=MsG0480023738.01.T01:cds;Parent=MsG0480023738.01.T01
Chr4 CDS 89244303 89244384 89244303 ID=MsG0480023738.01.T01:cds;Parent=MsG0480023738.01.T01
Chr4 CDS 89244013 89244131 89244013 ID=MsG0480023738.01.T01:cds;Parent=MsG0480023738.01.T01
Chr4 CDS 89243903 89243926 89243903 ID=MsG0480023738.01.T01:cds;Parent=MsG0480023738.01.T01
Chr4 CDS 89243513 89243607 89243513 ID=MsG0480023738.01.T01:cds;Parent=MsG0480023738.01.T01
Chr4 CDS 89243347 89243436 89243347 ID=MsG0480023738.01.T01:cds;Parent=MsG0480023738.01.T01
Chr4 CDS 89243221 89243275 89243221 ID=MsG0480023738.01.T01:cds;Parent=MsG0480023738.01.T01
Chr4 CDS 89242664 89242788 89242664 ID=MsG0480023738.01.T01:cds;Parent=MsG0480023738.01.T01
Chr4 three_prime_UTR 89242340 89242663 89242340 ID=MsG0480023738.01.T01:three_prime_utr;Parent=MsG0480023738.01.T01
Chr4 mRNA 89242340 89248862 89242340 ID=MsG0480023738.01.T02;Parent=MsG0480023738.01;Name=MsG0480023738.01.T02;_AED=0.47;_eAED=0.48;_QI=110|0.8|0.90|1|1|1|11|324|287
Chr4 exon 89248714 89248862 89248714 ID=MsG0480023738.01.T02:exon:5031;Parent=MsG0480023738.01.T02
Chr4 five_prime_UTR 89248753 89248862 89248753 ID=MsG0480023738.01.T02:five_prime_utr;Parent=MsG0480023738.01.T02
Chr4 CDS 89248714 89248752 89248714 ID=MsG0480023738.01.T02:cds;Parent=MsG0480023738.01.T02
Chr4 CDS 89248393 89248485 89248393 ID=MsG0480023738.01.T02:cds;Parent=MsG0480023738.01.T02
Chr4 CDS 89245736 89245810 89245736 ID=MsG0480023738.01.T02:cds;Parent=MsG0480023738.01.T02
Chr4 CDS 89245568 89245634 89245568 ID=MsG0480023738.01.T02:cds;Parent=MsG0480023738.01.T02
Chr4 CDS 89244303 89244384 89244303 ID=MsG0480023738.01.T02:cds;Parent=MsG0480023738.01.T02
Chr4 CDS 89244013 89244131 89244013 ID=MsG0480023738.01.T02:cds;Parent=MsG0480023738.01.T02
Chr4 CDS 89243903 89243926 89243903 ID=MsG0480023738.01.T02:cds;Parent=MsG0480023738.01.T02
Chr4 CDS 89243513 89243607 89243513 ID=MsG0480023738.01.T02:cds;Parent=MsG0480023738.01.T02
Chr4 CDS 89243347 89243436 89243347 ID=MsG0480023738.01.T02:cds;Parent=MsG0480023738.01.T02
Chr4 CDS 89243221 89243275 89243221 ID=MsG0480023738.01.T02:cds;Parent=MsG0480023738.01.T02
Chr4 CDS 89242664 89242788 89242664 ID=MsG0480023738.01.T02:cds;Parent=MsG0480023738.01.T02
Chr4 three_prime_UTR 89242340 89242663 89242340 ID=MsG0480023738.01.T02:three_prime_utr;Parent=MsG0480023738.01.T02
Gene Sequence

>MsG0480023738.01.T01

ATGAGTTCATCTTCCATCGACGCTTTTCCTGCAATCCAGGAAACTCTCCTGGAGTTTCGTGCTGGTAAAATGTCACTAGAGGGAAAAAGGGTAGTTCCTGATGCACGCAAAGGACTCGTTCGCATTGCTAGGGTTAATCAAACATCTGGAAGGGTTTACATATTGAAGTTTAATAGCGATGACAGAAAGTTCTTCTTCTGGATGCAGGAATCTAATGCTGATAATGACTCGCAACTGTGTAGCTCTGTGAATGATTACCTCAACAGACCATTAGAGCTCCTTGGTGAAGAAGAACCTGATGTATCCCTTCCGCTTGAAGTTTCTGAAGATACGGTTGAAGATGACATCTCATCCAGAGCTGCAAACTTGGTTGTCCCGAACTTTGGTGTGGATGCAACTAGCGATGTAACATCTTCTGGTCCAGTTAAATTGGCAGATCTCCAGAGAATATTGAGCAACATTGGACCTGCTGCAGATAGCATTCTTGATCCTGACGAAGGCTTTGAACTCGGTGACATTTTGAAGCCTGATCTGATATTGCCATTGATGGAGACGTTACCATTGGAGCAGCGTCTAGCTTCCTATTTACCAGAGGGTACTTGGTCTCCAGAAGATATATTGGAGTTGTTGCAGAGCCCACCTTTCCGTCAGCAAGTAGATTCTTTTACTTATGTAAAGGCTGCTGTACTTCGAACAGGACAGATAGATTTGTCCCAGTTTGGAATTGATCCAAGTAAATACAAGTTCACAGTTTTGTCTTTTCTGGAGGCTCTTGAGGATTCTGTCTCCAAGTCTGAGGAATCTAGGCAAGATGATCAGGAATTAATATCTCAATCTTGTACCCCAATGGATGAATCCAAGTAG

>MsG0480023738.01.T02

ATGAGTTCATCTTCCATCGACGCTTTTCCTGCAATCCAGGAAACTCTCCTGGAGTTTCGTGCTGGTAAAATGTCACTAGAGGGAAAAAGGGTAGTTCCTGATGCACGCAAAGGACTCGTTCGCATTGCTAGGGTTAATCAAACATCTGGAAGGGTTTACATATTGAAGTTTAATAGCGATGACAGAAAGTTCTTCTTCTGGATGCAGGAATCTAATGCTGATAATGACTCGCAACTGTGTAGCTCTGTGAATGATTACCTCAACAGACCATTAGAGCTCCTTGGTGAAGAAGAACCTGATGTATCCCTTCCGCTTGAAGTTTCTGAAGATACGGTTGAAGATGACATCTCATCCAGAGCTGCAAACTTGGTTGTCCCGAACTTTGGTGTGGATGCAACTAGCGATGTAACATCTTCTGGTCCAGTTAAATTGGCAGATCTCCAGAGAATATTGAGCAACATTGGACCTGCTGCAGATAGCATTCTTGATCCTGACGAAGGCTTTGAACTCGGTGACATTTTGAAGCCTGATCTGATATTGCCATTGATGGAGACGTTACCATTGGAGCAGCGTCTAGCTTCCTATTTACCAGAGGGTACTTGGTCTCCAGAAGATATATTGGAGTTGTTGCAGAGCCCACCTTTCCGTCAGCAAGTAGATTCTTTTACTTATGTAAAGGCTGCTGTACTTCGAACAGGACAGATAGATTTGTCCCAGTTTGGAATTGATCCAAGTAAATACAAGTTCACAGTTTTGTCTTTTCTGGAGGCTCTTGAGGATTCTGTCTCCAAGTCTGAGGAATCTAGGCAAGATGATCAGGAATTAATATCTCAATCTTGTACCCCAATGGATGAATCCAAGTAG
Protein sequence

>MsG0480023738.01.T01

MSSSSIDAFPAIQETLLEFRAGKMSLEGKRVVPDARKGLVRIARVNQTSGRVYILKFNSDDRKFFFWMQESNADNDSQLCSSVNDYLNRPLELLGEEEPDVSLPLEVSEDTVEDDISSRAANLVVPNFGVDATSDVTSSGPVKLADLQRILSNIGPAADSILDPDEGFELGDILKPDLILPLMETLPLEQRLASYLPEGTWSPEDILELLQSPPFRQQVDSFTYVKAAVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKSEESRQDDQELISQSCTPMDESK*

>MsG0480023738.01.T02

MSSSSIDAFPAIQETLLEFRAGKMSLEGKRVVPDARKGLVRIARVNQTSGRVYILKFNSDDRKFFFWMQESNADNDSQLCSSVNDYLNRPLELLGEEEPDVSLPLEVSEDTVEDDISSRAANLVVPNFGVDATSDVTSSGPVKLADLQRILSNIGPAADSILDPDEGFELGDILKPDLILPLMETLPLEQRLASYLPEGTWSPEDILELLQSPPFRQQVDSFTYVKAAVLRTGQIDLSQFGIDPSKYKFTVLSFLEALEDSVSKSEESRQDDQELISQSCTPMDESK*