Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024698.01.T01 | AAB99754.1 | 100 | 97 | 0 | 0 | 12 | 108 | 262 | 358 | 9.53E-60 | 197 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024698.01.T01 | P37228 | 86.598 | 97 | 13 | 0 | 12 | 108 | 257 | 353 | 1.96E-52 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180004108.01 | MsG0580024698.01 | 0.809179 | 2.150673e-50 | 1.254035e-47 |
| MsG0180005169.01 | MsG0580024698.01 | 0.812314 | 4.511251e-51 | 2.858888e-48 |
| MsG0180005193.01 | MsG0580024698.01 | 0.855235 | 7.225975e-62 | 1.656857e-58 |
| MsG0180005990.01 | MsG0580024698.01 | 0.822984 | 1.768328e-53 | 1.503241e-50 |
| MsG0180006144.01 | MsG0580024698.01 | 0.825962 | 3.521106e-54 | 3.257797e-51 |
| MsG0280010595.01 | MsG0580024698.01 | 0.801891 | 7.268800e-49 | 3.511535e-46 |
| MsG0280011307.01 | MsG0580024698.01 | 0.800809 | 1.210605e-48 | 5.690046e-46 |
| MsG0480018779.01 | MsG0580024698.01 | 0.817529 | 3.146167e-52 | 2.296871e-49 |
| MsG0480021750.01 | MsG0580024698.01 | 0.847078 | 1.451726e-59 | 2.550967e-56 |
| MsG0480021959.01 | MsG0580024698.01 | 0.826996 | 1.996281e-54 | 1.902467e-51 |
| MsG0480022707.01 | MsG0580024698.01 | 0.837468 | 5.107469e-57 | 6.640779e-54 |
| MsG0480023636.01 | MsG0580024698.01 | 0.816651 | 4.955241e-52 | 3.531756e-49 |
| MsG0480023738.01 | MsG0580024698.01 | 0.800337 | 1.511085e-48 | 7.018135e-46 |
| MsG0580024468.01 | MsG0580024698.01 | 0.836719 | 7.935946e-57 | 1.008565e-53 |
| MsG0580024698.01 | MsG0680030415.01 | 0.829731 | 4.367474e-55 | 4.508935e-52 |
| MsG0580024698.01 | MsG0680035877.01 | 0.807188 | 5.709201e-50 | 3.159356e-47 |
| MsG0580024698.01 | MsG0780035957.01 | 0.819199 | 1.316777e-52 | 1.006540e-49 |
| MsG0580024698.01 | MsG0780036183.01 | 0.831293 | 1.811932e-55 | 1.957685e-52 |
| MsG0580024698.01 | MsG0780036288.01 | 0.845145 | 4.875187e-59 | 8.047705e-56 |
| MsG0580024698.01 | MsG0780036870.01 | 0.810445 | 1.148401e-50 | 6.923617e-48 |
| MsG0580024698.01 | MsG0780038911.01 | 0.843563 | 1.297605e-58 | 2.038266e-55 |
| MsG0580024698.01 | MsG0780040858.01 | 0.818607 | 1.794880e-52 | 1.349729e-49 |
| MsG0580024698.01 | MsG0780041435.01 | 0.809015 | 2.331838e-50 | 1.353642e-47 |
| MsG0580024698.01 | MsG0880042134.01 | 0.804769 | 1.842628e-49 | 9.582477e-47 |
| MsG0580024698.01 | MsG0880043144.01 | 0.802941 | 4.417051e-49 | 2.191530e-46 |
| MsG0580024698.01 | MsG0880044145.01 | 0.817505 | 3.185471e-52 | 2.324120e-49 |
| MsG0580024698.01 | MsG0880046089.01 | 0.802166 | 6.382948e-49 | 3.105069e-46 |
| MsG0580024698.01 | MsG0880047763.01 | 0.842923 | 1.921710e-58 | 2.957924e-55 |
| MsG0380015027.01 | MsG0580024698.01 | 0.805069 | 1.594998e-49 | 8.358826e-47 |
| MsG0380015435.01 | MsG0580024698.01 | 0.807386 | 5.184064e-50 | 2.883567e-47 |
| MsG0380016133.01 | MsG0580024698.01 | 0.817078 | 3.974154e-52 | 2.865730e-49 |
| MsG0380016559.01 | MsG0580024698.01 | 0.852438 | 4.615575e-61 | 9.644723e-58 |
| MsG0380016560.01 | MsG0580024698.01 | 0.848990 | 4.309135e-60 | 8.051249e-57 |
| MsG0380016701.01 | MsG0580024698.01 | 0.850093 | 2.121537e-60 | 4.109280e-57 |
| MsG0380017461.01 | MsG0580024698.01 | 0.803037 | 4.219212e-49 | 2.098537e-46 |
| MsG0380017540.01 | MsG0580024698.01 | 0.846223 | 2.485990e-59 | 4.248766e-56 |
| MsG0380017947.01 | MsG0580024698.01 | 0.825430 | 4.706813e-54 | 4.289023e-51 |
| MsG0380017979.01 | MsG0580024698.01 | 0.800100 | 1.688652e-48 | 7.795534e-46 |
| MsG0480018110.01 | MsG0580024698.01 | 0.810422 | 1.162144e-50 | 7.001857e-48 |
| MsG0480018214.01 | MsG0580024698.01 | 0.807977 | 3.883288e-50 | 2.193552e-47 |
| MsG0480018319.01 | MsG0580024698.01 | 0.826237 | 3.029677e-54 | 2.825033e-51 |
| MsG0280006593.01 | MsG0580024698.01 | 0.812055 | 5.139232e-51 | 3.233800e-48 |
| MsG0280007787.01 | MsG0580024698.01 | 0.804051 | 2.600322e-49 | 1.327504e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024698.01.T01 | MTR_5g014710 | 98.969 | 97 | 1 | 0 | 12 | 108 | 262 | 358 | 2.12e-63 | 196 |
| MsG0580024698.01.T01 | MTR_4g092690 | 76.289 | 97 | 23 | 0 | 12 | 108 | 260 | 356 | 2.89e-48 | 157 |
| MsG0580024698.01.T01 | MTR_8g463760 | 61.616 | 99 | 37 | 1 | 8 | 105 | 242 | 340 | 1.32e-36 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024698.01.T01 | AT2G22780 | 73.196 | 97 | 26 | 0 | 12 | 108 | 258 | 354 | 1.19e-45 | 150 |
| MsG0580024698.01.T01 | AT1G53240 | 69.149 | 94 | 29 | 0 | 12 | 105 | 245 | 338 | 8.83e-41 | 137 |
| MsG0580024698.01.T01 | AT3G15020 | 64.894 | 94 | 33 | 0 | 12 | 105 | 245 | 338 | 6.12e-39 | 133 |
| MsG0580024698.01.T01 | AT5G09660 | 72.165 | 97 | 27 | 0 | 12 | 108 | 237 | 333 | 1.22e-36 | 127 |
| MsG0580024698.01.T01 | AT5G09660 | 72.165 | 97 | 27 | 0 | 12 | 108 | 257 | 353 | 1.89e-36 | 127 |
| MsG0580024698.01.T01 | AT5G09660 | 72.165 | 97 | 27 | 0 | 12 | 108 | 258 | 354 | 2.05e-36 | 126 |
| MsG0580024698.01.T01 | AT3G47520 | 54.255 | 94 | 41 | 1 | 12 | 103 | 298 | 391 | 1.97e-28 | 106 |
| MsG0580024698.01.T01 | AT3G15020 | 64.912 | 57 | 20 | 0 | 12 | 68 | 245 | 301 | 1.81e-20 | 84.0 |
| MsG0580024698.01.T01 | AT3G53910 | 32.558 | 86 | 56 | 1 | 25 | 108 | 9 | 94 | 6.88e-14 | 62.8 |
Find 32 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTGTTGCTAACTCTTTCT+TGG | 0.221091 | 5:+8385365 | None:intergenic |
| ATATTTCAACAGGGCAAGTT+TGG | 0.323504 | 5:-8385394 | MsG0580024698.01.T01:intron |
| TGCAGATCCAGCTCCAGCTT+TGG | 0.369553 | 5:+8386135 | None:intergenic |
| AATACAGGTTCGCTATTTGA+TGG | 0.372876 | 5:+8385210 | None:intergenic |
| GTGAGAGACAGCAGAGAGGC+TGG | 0.394122 | 5:-8386510 | MsG0580024698.01.T01:CDS |
| CTCTAGGCCAAAGCTGGAGC+TGG | 0.397270 | 5:-8386142 | MsG0580024698.01.T01:intron |
| GTTGAGGAATTTCTTCCTCT+TGG | 0.402166 | 5:-8385525 | MsG0580024698.01.T01:CDS |
| TTATTACACTTATCTAATAC+AGG | 0.411176 | 5:+8385195 | None:intergenic |
| CAACAGGGCAAGTTTGGAAA+AGG | 0.416141 | 5:-8385388 | MsG0580024698.01.T01:intron |
| CATACCTCTCATAATCACTT+AGG | 0.429482 | 5:+8385499 | None:intergenic |
| GTTAGCAACAAGCGTGGAGA+AGG | 0.441857 | 5:-8385355 | MsG0580024698.01.T01:CDS |
| ATACCTCTCATAATCACTTA+GGG | 0.455021 | 5:+8385500 | None:intergenic |
| ATTTCGATCTCACAGCTGAC+AGG | 0.485786 | 5:+8385268 | None:intergenic |
| ATGTGCATATGTTGATTCAC+AGG | 0.490249 | 5:-8385756 | MsG0580024698.01.T01:intron |
| AATTAAAGATCTATATTGCC+AGG | 0.499516 | 5:+8385099 | None:intergenic |
| TGGATCTGCAACACTATCAA+TGG | 0.512103 | 5:-8386122 | MsG0580024698.01.T01:intron |
| GAAATTCCTCAACTCCGTTA+CGG | 0.539768 | 5:+8385535 | None:intergenic |
| GCATGTCTTCGTGCGTTGAA+AGG | 0.542596 | 5:-8385797 | MsG0580024698.01.T01:CDS |
| AAAGTACGACTTGGCCGTAA+CGG | 0.543008 | 5:-8385549 | MsG0580024698.01.T01:CDS |
| TATCACATCCTGAAAATAAG+TGG | 0.549427 | 5:-8385303 | MsG0580024698.01.T01:three_prime_UTR |
| CACATCCTGAAAATAAGTGG+TGG | 0.574757 | 5:-8385300 | MsG0580024698.01.T01:three_prime_UTR |
| TTTGCATCAAAAGTACGACT+TGG | 0.583080 | 5:-8385558 | MsG0580024698.01.T01:CDS |
| TTAGCAACAAGCGTGGAGAA+GGG | 0.591626 | 5:-8385354 | MsG0580024698.01.T01:CDS |
| ACTTGGCCGTAACGGAGTTG+AGG | 0.606364 | 5:-8385541 | MsG0580024698.01.T01:CDS |
| ACATCCTGAAAATAAGTGGT+GGG | 0.611234 | 5:-8385299 | MsG0580024698.01.T01:three_prime_UTR |
| TTTCGATCTCACAGCTGACA+GGG | 0.612593 | 5:+8385269 | None:intergenic |
| GAAAGAGTTAGCAACAAGCG+TGG | 0.628742 | 5:-8385361 | MsG0580024698.01.T01:CDS |
| GTCCCCTAAGTGATTATGAG+AGG | 0.633118 | 5:-8385503 | MsG0580024698.01.T01:intron |
| TCTTCGTGCGTTGAAAGGAG+AGG | 0.666069 | 5:-8385792 | MsG0580024698.01.T01:CDS |
| TAATCACTTAGGGGACCAAG+AGG | 0.668806 | 5:+8385510 | None:intergenic |
| TACCTCTCATAATCACTTAG+GGG | 0.681098 | 5:+8385501 | None:intergenic |
| GGTGGTGAGAGACAGCAGAG+AGG | 0.742962 | 5:-8386514 | MsG0580024698.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTGAATATAAATAGAT+GGG | - | Chr5:8385516-8385535 | MsG0580024698.01.T01:CDS | 10.0% |
| !!! | TTATTTTGAATATAAATAGA+TGG | - | Chr5:8385515-8385534 | MsG0580024698.01.T01:CDS | 10.0% |
| !! | TTAATTCCATTAATAAGTAT+AGG | + | Chr5:8385552-8385571 | None:intergenic | 15.0% |
| !!! | ATTAGAATCTTTTAAAACTA+TGG | + | Chr5:8385930-8385949 | None:intergenic | 15.0% |
| !!! | GAAATAAACACTTTTATTAT+TGG | + | Chr5:8386453-8386472 | None:intergenic | 15.0% |
| !! | ACATATAAGAAAAACAATTG+TGG | - | Chr5:8385608-8385627 | MsG0580024698.01.T01:intron | 20.0% |
| !! | ACCAAAAAGTAATAAATGAA+TGG | - | Chr5:8385577-8385596 | MsG0580024698.01.T01:CDS | 20.0% |
| !! | ATATCTACTTATATTTCAAC+AGG | - | Chr5:8386203-8386222 | MsG0580024698.01.T01:intron | 20.0% |
| !! | TATCTACTTATATTTCAACA+GGG | - | Chr5:8386204-8386223 | MsG0580024698.01.T01:intron | 20.0% |
| !! | TTATTACACTTATCTAATAC+AGG | + | Chr5:8386415-8386434 | None:intergenic | 20.0% |
| !!! | ACCATTCATTTATTACTTTT+TGG | + | Chr5:8385581-8385600 | None:intergenic | 20.0% |
| !!! | CTTTAATTTTTCTATATGCA+GGG | - | Chr5:8385254-8385273 | MsG0580024698.01.T01:three_prime_UTR | 20.0% |
| !!! | TATATCTTCATTTTTTTTCC+TGG | - | Chr5:8386490-8386509 | MsG0580024698.01.T01:intron | 20.0% |
| !!! | TCATTTTTACATGTATCAAT+AGG | + | Chr5:8386169-8386188 | None:intergenic | 20.0% |
| !!! | TGAATAAGTACTTTTTCTTA+AGG | - | Chr5:8385988-8386007 | MsG0580024698.01.T01:intron | 20.0% |
| ! | AATTAAAGATCTATATTGCC+AGG | + | Chr5:8386511-8386530 | None:intergenic | 25.0% |
| ! | CATATATACTTGTATAGCAT+AGG | + | Chr5:8385362-8385381 | None:intergenic | 25.0% |
| ! | TTGAAAATACTAATCTGTCT+TGG | - | Chr5:8385302-8385321 | MsG0580024698.01.T01:three_prime_UTR | 25.0% |
| !! | AAAACTTTTCCTACAAACAA+AGG | + | Chr5:8385147-8385166 | None:intergenic | 25.0% |
| !! | ACAATGTTGTAATTTTCTCT+AGG | - | Chr5:8385449-8385468 | MsG0580024698.01.T01:intron | 25.0% |
| !!! | AAATGCTTTGAATTTTGTAG+AGG | - | Chr5:8385209-8385228 | MsG0580024698.01.T01:three_prime_UTR | 25.0% |
| !!! | AATCTTTTAAAACTATGGCA+GGG | + | Chr5:8385925-8385944 | None:intergenic | 25.0% |
| !!! | CTTTTTTGAAATTTCGTTCT+TGG | - | Chr5:8385677-8385696 | MsG0580024698.01.T01:intron | 25.0% |
| !!! | GCTTTAATTTTTCTATATGC+AGG | - | Chr5:8385253-8385272 | MsG0580024698.01.T01:three_prime_UTR | 25.0% |
| AAAATACTAATCTGTCTTGG+TGG | - | Chr5:8385305-8385324 | MsG0580024698.01.T01:three_prime_UTR | 30.0% | |
| ATACCTCTCATAATCACTTA+GGG | + | Chr5:8386110-8386129 | None:intergenic | 30.0% | |
| ATATGATTCCTTCATTGCTA+TGG | - | Chr5:8385398-8385417 | MsG0580024698.01.T01:intron | 30.0% | |
| TAGATAATCCATAGCAATGA+AGG | + | Chr5:8385409-8385428 | None:intergenic | 30.0% | |
| TATCACATCCTGAAAATAAG+TGG | - | Chr5:8386304-8386323 | MsG0580024698.01.T01:intron | 30.0% | |
| TCATGACTTCTTAACAATGT+TGG | - | Chr5:8385721-8385740 | MsG0580024698.01.T01:intron | 30.0% | |
| TGAGAGCCTATACTTATTAA+TGG | - | Chr5:8385543-8385562 | MsG0580024698.01.T01:CDS | 30.0% | |
| ! | GCTATGGATTATCTATACAT+TGG | - | Chr5:8385414-8385433 | MsG0580024698.01.T01:intron | 30.0% |
| !!! | GAATCTTTTAAAACTATGGC+AGG | + | Chr5:8385926-8385945 | None:intergenic | 30.0% |
| AATACAGGTTCGCTATTTGA+TGG | + | Chr5:8386400-8386419 | None:intergenic | 35.0% | |
| ACATCCTGAAAATAAGTGGT+GGG | - | Chr5:8386308-8386327 | MsG0580024698.01.T01:intron | 35.0% | |
| ATATTTCAACAGGGCAAGTT+TGG | - | Chr5:8386213-8386232 | MsG0580024698.01.T01:intron | 35.0% | |
| CATACCTCTCATAATCACTT+AGG | + | Chr5:8386111-8386130 | None:intergenic | 35.0% | |
| GCTTGCATGGGAAAAAATTT+AGG | - | Chr5:8385231-8385250 | MsG0580024698.01.T01:three_prime_UTR | 35.0% | |
| TACCTCTCATAATCACTTAG+GGG | + | Chr5:8386109-8386128 | None:intergenic | 35.0% | |
| TCAACTGTTTCATAAAGTGC+AGG | - | Chr5:8385761-8385780 | MsG0580024698.01.T01:CDS | 35.0% | |
| TTAAAACTATGGCAGGGAAT+AGG | + | Chr5:8385919-8385938 | None:intergenic | 35.0% | |
| ! | AATTTTGTAGAGGCTTGCAT+GGG | - | Chr5:8385219-8385238 | MsG0580024698.01.T01:three_prime_UTR | 35.0% |
| ! | ACTTTTCCTACAAACAAAGG+AGG | + | Chr5:8385144-8385163 | None:intergenic | 35.0% |
| ! | AGGATCTAAGACATCCTTTA+TGG | + | Chr5:8385899-8385918 | None:intergenic | 35.0% |
| ! | CGTACTTTTGATGCAAAGAA+TGG | + | Chr5:8386046-8386065 | None:intergenic | 35.0% |
| ! | TTTGCATCAAAAGTACGACT+TGG | - | Chr5:8386049-8386068 | MsG0580024698.01.T01:intron | 35.0% |
| !! | AAATCCCACCACTTATTTTC+AGG | + | Chr5:8386315-8386334 | None:intergenic | 35.0% |
| !! | ATGTGCATATGTTGATTCAC+AGG | - | Chr5:8385851-8385870 | MsG0580024698.01.T01:intron | 35.0% |
| AAGCATTCAAGCTTCGACTT+GGG | + | Chr5:8385969-8385988 | None:intergenic | 40.0% | |
| AGACATCCTTTATGGAAAGC+AGG | + | Chr5:8385891-8385910 | None:intergenic | 40.0% | |
| CAAAGTCCTGCTTTCCATAA+AGG | - | Chr5:8385882-8385901 | MsG0580024698.01.T01:intron | 40.0% | |
| CACATCCTGAAAATAAGTGG+TGG | - | Chr5:8386307-8386326 | MsG0580024698.01.T01:intron | 40.0% | |
| GAAATTCCTCAACTCCGTTA+CGG | + | Chr5:8386075-8386094 | None:intergenic | 40.0% | |
| GAGGCTAATTGAATGTGAGT+TGG | - | Chr5:8385176-8385195 | MsG0580024698.01.T01:three_prime_UTR | 40.0% | |
| GTTGAGGAATTTCTTCCTCT+TGG | - | Chr5:8386082-8386101 | MsG0580024698.01.T01:intron | 40.0% | |
| TCTGTCTTGGTGGAATGTAT+CGG | - | Chr5:8385315-8385334 | MsG0580024698.01.T01:exon | 40.0% | |
| TGGATCTGCAACACTATCAA+TGG | - | Chr5:8385485-8385504 | MsG0580024698.01.T01:intron | 40.0% | |
| TGTTCAACGACAACTGTTAG+TGG | + | Chr5:8386137-8386156 | None:intergenic | 40.0% | |
| ! | AATTTTCTCTAGGCCAAAGC+TGG | - | Chr5:8385459-8385478 | MsG0580024698.01.T01:intron | 40.0% |
| ! | GAATTTTGTAGAGGCTTGCA+TGG | - | Chr5:8385218-8385237 | MsG0580024698.01.T01:three_prime_UTR | 40.0% |
| ! | GCTTGTTGCTAACTCTTTCT+TGG | + | Chr5:8386245-8386264 | None:intergenic | 40.0% |
| !! | GCATATGTTGATTCACAGGT+AGG | - | Chr5:8385855-8385874 | MsG0580024698.01.T01:intron | 40.0% |
| !!! | GAAAAGTTTTGAGACTCGAG+AGG | - | Chr5:8385157-8385176 | MsG0580024698.01.T01:three_prime_UTR | 40.0% |
| ATTTCGATCTCACAGCTGAC+AGG | + | Chr5:8386342-8386361 | None:intergenic | 45.0% | |
| CAACAGGGCAAGTTTGGAAA+AGG | - | Chr5:8386219-8386238 | MsG0580024698.01.T01:intron | 45.0% | |
| CAAGCATTCAAGCTTCGACT+TGG | + | Chr5:8385970-8385989 | None:intergenic | 45.0% | |
| GAAAGAGTTAGCAACAAGCG+TGG | - | Chr5:8386246-8386265 | MsG0580024698.01.T01:intron | 45.0% | |
| GGACTAACAAAGTCTGTCGT+AGG | - | Chr5:8386009-8386028 | MsG0580024698.01.T01:intron | 45.0% | |
| GTCCCCTAAGTGATTATGAG+AGG | - | Chr5:8386104-8386123 | MsG0580024698.01.T01:intron | 45.0% | |
| TAATCACTTAGGGGACCAAG+AGG | + | Chr5:8386100-8386119 | None:intergenic | 45.0% | |
| TTAGCAACAAGCGTGGAGAA+GGG | - | Chr5:8386253-8386272 | MsG0580024698.01.T01:intron | 45.0% | |
| TTTCGATCTCACAGCTGACA+GGG | + | Chr5:8386341-8386360 | None:intergenic | 45.0% | |
| ! | AAAGTACGACTTGGCCGTAA+CGG | - | Chr5:8386058-8386077 | MsG0580024698.01.T01:intron | 45.0% |
| ! | TGCACTCCTCCTTTGTTTGT+AGG | - | Chr5:8385135-8385154 | MsG0580024698.01.T01:three_prime_UTR | 45.0% |
| GCATGTCTTCGTGCGTTGAA+AGG | - | Chr5:8385810-8385829 | MsG0580024698.01.T01:CDS | 50.0% | |
| GTTAGCAACAAGCGTGGAGA+AGG | - | Chr5:8386252-8386271 | MsG0580024698.01.T01:intron | 50.0% | |
| TCTTCGTGCGTTGAAAGGAG+AGG | - | Chr5:8385815-8385834 | MsG0580024698.01.T01:CDS | 50.0% | |
| AGCAGAGAGGCTGGAGTAGT+AGG | - | Chr5:8385106-8385125 | MsG0580024698.01.T01:three_prime_UTR | 55.0% | |
| TGCAGATCCAGCTCCAGCTT+TGG | + | Chr5:8385475-8385494 | None:intergenic | 55.0% | |
| ! | ACTTGGCCGTAACGGAGTTG+AGG | - | Chr5:8386066-8386085 | MsG0580024698.01.T01:intron | 55.0% |
| CTCTAGGCCAAAGCTGGAGC+TGG | - | Chr5:8385465-8385484 | MsG0580024698.01.T01:intron | 60.0% | |
| GGTGGTGAGAGACAGCAGAG+AGG | - | Chr5:8385093-8385112 | MsG0580024698.01.T01:three_prime_UTR | 60.0% | |
| GTGAGAGACAGCAGAGAGGC+TGG | - | Chr5:8385097-8385116 | MsG0580024698.01.T01:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 8385091 | 8386538 | 8385091 | ID=MsG0580024698.01;Name=MsG0580024698.01 |
| Chr5 | mRNA | 8385091 | 8386538 | 8385091 | ID=MsG0580024698.01.T01;Parent=MsG0580024698.01;Name=MsG0580024698.01.T01;_AED=0.44;_eAED=0.47;_QI=0|0.75|0.8|1|0.5|0.6|5|241|108 |
| Chr5 | exon | 8385091 | 8385404 | 8385091 | ID=MsG0580024698.01.T01:exon:2776;Parent=MsG0580024698.01.T01 |
| Chr5 | exon | 8385504 | 8385598 | 8385504 | ID=MsG0580024698.01.T01:exon:2775;Parent=MsG0580024698.01.T01 |
| Chr5 | exon | 8385757 | 8385846 | 8385757 | ID=MsG0580024698.01.T01:exon:2774;Parent=MsG0580024698.01.T01 |
| Chr5 | exon | 8386123 | 8386158 | 8386123 | ID=MsG0580024698.01.T01:exon:2773;Parent=MsG0580024698.01.T01 |
| Chr5 | exon | 8386506 | 8386538 | 8386506 | ID=MsG0580024698.01.T01:exon:2772;Parent=MsG0580024698.01.T01 |
| Chr5 | CDS | 8386506 | 8386538 | 8386506 | ID=MsG0580024698.01.T01:cds;Parent=MsG0580024698.01.T01 |
| Chr5 | CDS | 8386123 | 8386158 | 8386123 | ID=MsG0580024698.01.T01:cds;Parent=MsG0580024698.01.T01 |
| Chr5 | CDS | 8385757 | 8385846 | 8385757 | ID=MsG0580024698.01.T01:cds;Parent=MsG0580024698.01.T01 |
| Chr5 | CDS | 8385504 | 8385598 | 8385504 | ID=MsG0580024698.01.T01:cds;Parent=MsG0580024698.01.T01 |
| Chr5 | CDS | 8385332 | 8385404 | 8385332 | ID=MsG0580024698.01.T01:cds;Parent=MsG0580024698.01.T01 |
| Chr5 | three_prime_UTR | 8385091 | 8385331 | 8385091 | ID=MsG0580024698.01.T01:three_prime_utr;Parent=MsG0580024698.01.T01 |
| Gene Sequence |
| Protein sequence |
