Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006483.01.T01 | XP_003593250.1 | 98.214 | 112 | 2 | 0 | 1 | 112 | 1 | 112 | 1.21E-74 | 226 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006483.01.T01 | O04287 | 88.393 | 112 | 13 | 0 | 1 | 112 | 1 | 112 | 2.43E-71 | 211 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006483.01.T01 | B7FFD7 | 98.214 | 112 | 2 | 0 | 1 | 112 | 1 | 112 | 5.78e-75 | 226 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048687.01 | MsG0280006483.01 | 0.816162 | 6.374244e-52 | 4.482733e-49 |
| MsG0180000205.01 | MsG0280006483.01 | 0.810780 | 9.721808e-51 | 5.914061e-48 |
| MsG0180000575.01 | MsG0280006483.01 | 0.876423 | 1.412688e-68 | 6.845852e-65 |
| MsG0180000614.01 | MsG0280006483.01 | 0.850664 | 1.467366e-60 | 2.895521e-57 |
| MsG0180000615.01 | MsG0280006483.01 | 0.860146 | 2.530982e-63 | 6.849864e-60 |
| MsG0180000743.01 | MsG0280006483.01 | 0.895407 | 9.868844e-76 | 1.022606e-71 |
| MsG0180000806.01 | MsG0280006483.01 | 0.805659 | 1.199431e-49 | 6.381874e-47 |
| MsG0180000982.01 | MsG0280006483.01 | 0.860401 | 2.120165e-63 | 5.787704e-60 |
| MsG0180001886.01 | MsG0280006483.01 | 0.803683 | 3.100444e-49 | 1.567874e-46 |
| MsG0180002489.01 | MsG0280006483.01 | 0.814623 | 1.402008e-51 | 9.454447e-49 |
| MsG0180002547.01 | MsG0280006483.01 | 0.853441 | 2.385209e-61 | 5.154540e-58 |
| MsG0180003548.01 | MsG0280006483.01 | 0.823769 | 1.158680e-53 | 1.007180e-50 |
| MsG0180003793.01 | MsG0280006483.01 | 0.839851 | 1.237148e-57 | 1.730354e-54 |
| MsG0180004050.01 | MsG0280006483.01 | 0.828145 | 1.058083e-54 | 1.042756e-51 |
| MsG0180004259.01 | MsG0280006483.01 | 0.802046 | 6.755045e-49 | 3.276036e-46 |
| MsG0180004481.01 | MsG0280006483.01 | 0.835652 | 1.481178e-56 | 1.822859e-53 |
| MsG0180004482.01 | MsG0280006483.01 | 0.817981 | 2.487443e-52 | 1.838550e-49 |
| MsG0180004509.01 | MsG0280006483.01 | 0.864205 | 1.437233e-64 | 4.475509e-61 |
| MsG0180004779.01 | MsG0280006483.01 | 0.804875 | 1.750897e-49 | 9.131074e-47 |
| MsG0180004854.01 | MsG0280006483.01 | 0.841551 | 4.435605e-58 | 6.540757e-55 |
| MsG0180004861.01 | MsG0280006483.01 | 0.877815 | 4.642057e-69 | 2.366979e-65 |
| MsG0180005334.01 | MsG0280006483.01 | 0.816317 | 5.885651e-52 | 4.156899e-49 |
| MsG0180005954.01 | MsG0280006483.01 | 0.806163 | 9.398648e-50 | 5.065881e-47 |
| MsG0180005993.01 | MsG0280006483.01 | 0.836092 | 1.145978e-56 | 1.429292e-53 |
| MsG0180006013.01 | MsG0280006483.01 | 0.830944 | 2.207623e-55 | 2.360837e-52 |
| MsG0280006422.01 | MsG0280006483.01 | 0.861691 | 8.584264e-64 | 2.449123e-60 |
| MsG0280006424.01 | MsG0280006483.01 | 0.817001 | 4.135282e-52 | 2.975874e-49 |
| MsG0280006483.01 | MsG0280006593.01 | 0.856097 | 4.050052e-62 | 9.557575e-59 |
| MsG0280006483.01 | MsG0280006993.01 | 0.822757 | 1.996912e-53 | 1.686779e-50 |
| MsG0280006483.01 | MsG0280007101.01 | 0.803837 | 2.880901e-49 | 1.462690e-46 |
| MsG0280006483.01 | MsG0280007787.01 | 0.862927 | 3.582226e-64 | 1.067134e-60 |
| MsG0280006483.01 | MsG0280007847.01 | 0.851224 | 1.020369e-60 | 2.051060e-57 |
| MsG0280006483.01 | MsG0280008417.01 | 0.818729 | 1.683885e-52 | 1.270579e-49 |
| MsG0280006483.01 | MsG0280009575.01 | 0.831151 | 1.963917e-55 | 2.113065e-52 |
| MsG0280006483.01 | MsG0280010177.01 | 0.814346 | 1.614711e-51 | 1.080767e-48 |
| MsG0280006483.01 | MsG0280010383.01 | 0.803285 | 3.749141e-49 | 1.876594e-46 |
| MsG0280006483.01 | MsG0280010434.01 | 0.809455 | 1.875872e-50 | 1.101875e-47 |
| MsG0280006483.01 | MsG0280010776.01 | 0.815878 | 7.375683e-52 | 5.146646e-49 |
| MsG0280006483.01 | MsG0280011388.01 | 0.869752 | 2.446488e-66 | 9.282386e-63 |
| MsG0280006483.01 | MsG0380011641.01 | 0.841266 | 5.275023e-58 | 7.708922e-55 |
| MsG0280006483.01 | MsG0380012073.01 | 0.832041 | 1.184999e-55 | 1.309123e-52 |
| MsG0280006483.01 | MsG0380014647.01 | 0.835875 | 1.300373e-56 | 1.611175e-53 |
| MsG0280006483.01 | MsG0380014797.01 | 0.834296 | 3.253977e-56 | 3.845326e-53 |
| MsG0280006483.01 | MsG0380015027.01 | 0.869440 | 3.092450e-66 | 1.160785e-62 |
| MsG0280006483.01 | MsG0380015435.01 | 0.855331 | 6.777035e-62 | 1.559209e-58 |
| MsG0280006483.01 | MsG0380016067.01 | 0.860707 | 1.712522e-63 | 4.724784e-60 |
| MsG0280006483.01 | MsG0380016133.01 | 0.849670 | 2.785990e-60 | 5.321714e-57 |
| MsG0280006483.01 | MsG0380016290.01 | 0.831898 | 1.285828e-55 | 1.414667e-52 |
| MsG0280006483.01 | MsG0380016389.01 | 0.824218 | 9.094410e-54 | 8.004803e-51 |
| MsG0280006483.01 | MsG0380016559.01 | 0.888109 | 7.903003e-73 | 6.038821e-69 |
| MsG0280006483.01 | MsG0380016560.01 | 0.878602 | 2.458719e-69 | 1.291855e-65 |
| MsG0280006483.01 | MsG0380016604.01 | 0.834743 | 2.512412e-56 | 3.008463e-53 |
| MsG0280006483.01 | MsG0380016701.01 | 0.803619 | 3.197117e-49 | 1.614119e-46 |
| MsG0280006483.01 | MsG0380016775.01 | 0.850964 | 1.207527e-60 | 2.406585e-57 |
| MsG0280006483.01 | MsG0380016860.01 | 0.879503 | 1.181955e-69 | 6.423376e-66 |
| MsG0280006483.01 | MsG0380016970.01 | 0.805651 | 1.204553e-49 | 6.407672e-47 |
| MsG0280006483.01 | MsG0380017039.01 | 0.818904 | 1.536559e-52 | 1.165160e-49 |
| MsG0280006483.01 | MsG0380017382.01 | 0.874617 | 5.870149e-68 | 2.660016e-64 |
| MsG0280006483.01 | MsG0380017540.01 | 0.844927 | 5.582561e-59 | 9.152771e-56 |
| MsG0280006483.01 | MsG0380017947.01 | 0.823551 | 1.303088e-53 | 1.125554e-50 |
| MsG0280006483.01 | MsG0380018033.01 | 0.826441 | 2.707934e-54 | 2.539852e-51 |
| MsG0280006483.01 | MsG0380018044.01 | 0.812094 | 5.039486e-51 | 3.174524e-48 |
| MsG0280006483.01 | MsG0480018110.01 | 0.854738 | 1.007757e-61 | 2.273055e-58 |
| MsG0280006483.01 | MsG0480018477.01 | 0.823492 | 1.345302e-53 | 1.160153e-50 |
| MsG0280006483.01 | MsG0480021448.01 | 0.849623 | 2.870698e-60 | 5.475014e-57 |
| MsG0280006483.01 | MsG0480021451.01 | 0.847358 | 1.216333e-59 | 2.156369e-56 |
| MsG0280006483.01 | MsG0480021453.01 | 0.881457 | 2.361872e-70 | 1.384899e-66 |
| MsG0280006483.01 | MsG0480021464.01 | 0.822535 | 2.249037e-53 | 1.887759e-50 |
| MsG0280006483.01 | MsG0480021465.01 | 0.808979 | 2.372725e-50 | 1.376089e-47 |
| MsG0280006483.01 | MsG0480021706.01 | 0.800886 | 1.167657e-48 | 5.499370e-46 |
| MsG0280006483.01 | MsG0480021750.01 | 0.826815 | 2.205807e-54 | 2.091043e-51 |
| MsG0280006483.01 | MsG0480021832.01 | 0.838035 | 3.652014e-57 | 4.832047e-54 |
| MsG0280006483.01 | MsG0480021994.01 | 0.814808 | 1.275675e-51 | 8.645700e-49 |
| MsG0280006483.01 | MsG0480022164.01 | 0.833859 | 4.186812e-56 | 4.883225e-53 |
| MsG0280006483.01 | MsG0480022223.01 | 0.873388 | 1.528365e-67 | 6.620775e-64 |
| MsG0280006483.01 | MsG0480022481.01 | 0.819427 | 1.168356e-52 | 8.988024e-50 |
| MsG0280006483.01 | MsG0480022614.01 | 0.818134 | 2.296506e-52 | 1.704662e-49 |
| MsG0280006483.01 | MsG0480022696.01 | 0.859333 | 4.449004e-63 | 1.170797e-59 |
| MsG0280006483.01 | MsG0480022711.01 | 0.804171 | 2.455439e-49 | 1.257362e-46 |
| MsG0280006483.01 | MsG0480022790.01 | 0.826830 | 2.187546e-54 | 2.074597e-51 |
| MsG0280006483.01 | MsG0480022795.01 | 0.819330 | 1.229360e-52 | 9.430968e-50 |
| MsG0280006483.01 | MsG0480022913.01 | 0.810149 | 1.330273e-50 | 7.958006e-48 |
| MsG0280006483.01 | MsG0480022960.01 | 0.886382 | 3.591260e-72 | 2.559454e-68 |
| MsG0280006483.01 | MsG0480023221.01 | 0.835870 | 1.304682e-56 | 1.616221e-53 |
| MsG0280006483.01 | MsG0480023356.01 | 0.818340 | 2.063257e-52 | 1.540320e-49 |
| MsG0280006483.01 | MsG0480023357.01 | 0.805729 | 1.159786e-49 | 6.182409e-47 |
| MsG0280006483.01 | MsG0480023399.01 | 0.848777 | 4.937157e-60 | 9.161022e-57 |
| MsG0280006483.01 | MsG0480023738.01 | 0.862185 | 6.060107e-64 | 1.759234e-60 |
| MsG0280006483.01 | MsG0480023771.01 | 0.878630 | 2.404135e-69 | 1.264602e-65 |
| MsG0280006483.01 | MsG0480023844.01 | 0.804132 | 2.501839e-49 | 1.279827e-46 |
| MsG0280006483.01 | MsG0580024051.01 | 0.850889 | 1.267704e-60 | 2.520171e-57 |
| MsG0280006483.01 | MsG0580024727.01 | 0.818481 | 1.916876e-52 | 1.436583e-49 |
| MsG0280006483.01 | MsG0580024754.01 | 0.823284 | 1.504482e-53 | 1.289766e-50 |
| MsG0280006483.01 | MsG0580025268.01 | 0.837295 | 5.656304e-57 | 7.314622e-54 |
| MsG0280006483.01 | MsG0580025409.01 | 0.807493 | 4.919973e-50 | 2.744329e-47 |
| MsG0280006483.01 | MsG0580025587.01 | 0.802575 | 5.256199e-49 | 2.583726e-46 |
| MsG0280006483.01 | MsG0580025756.01 | 0.841359 | 4.985433e-58 | 7.307235e-55 |
| MsG0280006483.01 | MsG0580026301.01 | 0.825080 | 5.695478e-54 | 5.138998e-51 |
| MsG0280006483.01 | MsG0580026485.01 | 0.837592 | 4.745704e-57 | 6.194174e-54 |
| MsG0280006483.01 | MsG0580027361.01 | 0.806806 | 6.879841e-50 | 3.769591e-47 |
| MsG0280006483.01 | MsG0680031507.01 | 0.850170 | 2.018966e-60 | 3.920336e-57 |
| MsG0280006483.01 | MsG0680031628.01 | 0.853315 | 2.591252e-61 | 5.575967e-58 |
| MsG0280006483.01 | MsG0680034671.01 | 0.829055 | 6.375217e-55 | 6.451175e-52 |
| MsG0280006483.01 | MsG0680035577.01 | 0.809940 | 1.475617e-50 | 8.779647e-48 |
| MsG0280006483.01 | MsG0680035888.01 | 0.835868 | 1.306322e-56 | 1.618143e-53 |
| MsG0280006483.01 | MsG0780036546.01 | 0.828330 | 9.547494e-55 | 9.459437e-52 |
| MsG0280006483.01 | MsG0780037240.01 | 0.818286 | 2.121692e-52 | 1.581486e-49 |
| MsG0280006483.01 | MsG0780038400.01 | 0.847856 | 8.871763e-60 | 1.598017e-56 |
| MsG0280006483.01 | MsG0780038909.01 | 0.828099 | 1.085029e-54 | 1.067917e-51 |
| MsG0280006483.01 | MsG0780039844.01 | 0.822786 | 1.966479e-53 | 1.662344e-50 |
| MsG0280006483.01 | MsG0780039848.01 | 0.848814 | 4.823300e-60 | 8.960347e-57 |
| MsG0280006483.01 | MsG0780040162.01 | 0.886439 | 3.418510e-72 | 2.442097e-68 |
| MsG0280006483.01 | MsG0780040511.01 | 0.819218 | 1.303800e-52 | 9.971561e-50 |
| MsG0280006483.01 | MsG0780040545.01 | 0.844635 | 6.692693e-59 | 1.087166e-55 |
| MsG0280006483.01 | MsG0780040845.01 | 0.803205 | 3.895991e-49 | 1.946103e-46 |
| MsG0280006483.01 | MsG0780041223.01 | 0.844075 | 9.460047e-59 | 1.510036e-55 |
| MsG0280006483.01 | MsG0780041224.01 | 0.808986 | 2.365372e-50 | 1.372049e-47 |
| MsG0280006483.01 | MsG0780041295.01 | 0.838580 | 2.642296e-57 | 3.554613e-54 |
| MsG0280006483.01 | MsG0780041392.01 | 0.887563 | 1.278192e-72 | 9.553314e-69 |
| MsG0280006483.01 | MsG0780041462.01 | 0.840859 | 6.745323e-58 | 9.735069e-55 |
| MsG0280006483.01 | MsG0780041796.01 | 0.824316 | 8.623578e-54 | 7.611095e-51 |
| MsG0280006483.01 | MsG0880042131.01 | 0.849661 | 2.801824e-60 | 5.350321e-57 |
| MsG0280006483.01 | MsG0880042519.01 | 0.818039 | 2.413567e-52 | 1.786794e-49 |
| MsG0280006483.01 | MsG0880042779.01 | 0.863438 | 2.488773e-64 | 7.543991e-61 |
| MsG0280006483.01 | MsG0880043477.01 | 0.847769 | 9.374508e-60 | 1.683787e-56 |
| MsG0280006483.01 | MsG0880044394.01 | 0.822293 | 2.559562e-53 | 2.133599e-50 |
| MsG0280006483.01 | MsG0880044975.01 | 0.832914 | 7.201222e-56 | 8.163859e-53 |
| MsG0280006483.01 | MsG0880044990.01 | 0.813525 | 2.449526e-51 | 1.603472e-48 |
| MsG0280006483.01 | MsG0880045042.01 | 0.801188 | 1.012812e-48 | 4.806515e-46 |
| MsG0280006483.01 | MsG0880045145.01 | 0.845307 | 4.405653e-59 | 7.311343e-56 |
| MsG0280006483.01 | MsG0880045656.01 | 0.803245 | 3.821832e-49 | 1.911045e-46 |
| MsG0280006483.01 | MsG0880045965.01 | 0.846189 | 2.539566e-59 | 4.335580e-56 |
| MsG0280006483.01 | MsG0880046126.01 | 0.821343 | 4.246295e-53 | 3.445522e-50 |
| MsG0280006483.01 | MsG0880047212.01 | 0.801032 | 1.090291e-48 | 5.154076e-46 |
| MsG0280006483.01 | MsG0880047427.01 | 0.807745 | 4.349756e-50 | 2.442254e-47 |
| MsG0280006483.01 | MsG0880047574.01 | 0.840229 | 9.860068e-58 | 1.395523e-54 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006483.01.T01 | MTR_2g009390 | 98.214 | 112 | 2 | 0 | 1 | 112 | 1 | 112 | 1.47e-78 | 226 |
| MsG0280006483.01.T01 | MTR_8g080980 | 45.455 | 110 | 54 | 4 | 2 | 110 | 38 | 142 | 1.17e-19 | 83.2 |
| MsG0280006483.01.T01 | MTR_8g080980 | 36.036 | 111 | 65 | 3 | 3 | 110 | 272 | 379 | 8.41e-14 | 66.2 |
| MsG0280006483.01.T01 | MTR_5g080300 | 40.000 | 110 | 63 | 3 | 2 | 110 | 12 | 119 | 1.53e-19 | 79.3 |
| MsG0280006483.01.T01 | MTR_8g038785 | 42.308 | 104 | 49 | 3 | 11 | 110 | 180 | 276 | 9.22e-18 | 77.8 |
| MsG0280006483.01.T01 | MTR_7g053470 | 45.263 | 95 | 47 | 3 | 16 | 110 | 49 | 138 | 3.80e-17 | 75.9 |
| MsG0280006483.01.T01 | MTR_8g012340 | 46.316 | 95 | 46 | 3 | 16 | 110 | 55 | 144 | 6.47e-17 | 75.1 |
| MsG0280006483.01.T01 | MTR_4g094785 | 36.364 | 110 | 56 | 4 | 11 | 110 | 133 | 238 | 3.92e-12 | 60.8 |
| MsG0280006483.01.T01 | MTR_4g032680 | 35.644 | 101 | 58 | 3 | 12 | 111 | 775 | 869 | 6.85e-11 | 58.2 |
| MsG0280006483.01.T01 | MTR_4g032680 | 35.644 | 101 | 58 | 3 | 12 | 111 | 775 | 869 | 6.85e-11 | 58.2 |
| MsG0280006483.01.T01 | MTR_4g032680 | 35.644 | 101 | 58 | 3 | 12 | 111 | 666 | 760 | 7.62e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006483.01.T01 | AT5G64350 | 86.607 | 112 | 15 | 0 | 1 | 112 | 1 | 112 | 3.52e-71 | 208 |
| MsG0280006483.01.T01 | AT3G55520 | 35.780 | 109 | 69 | 1 | 2 | 110 | 12 | 119 | 1.85e-17 | 73.9 |
| MsG0280006483.01.T01 | AT3G55520 | 35.780 | 109 | 69 | 1 | 2 | 110 | 12 | 119 | 1.85e-17 | 73.9 |
| MsG0280006483.01.T01 | AT3G55520 | 35.780 | 109 | 69 | 1 | 2 | 110 | 12 | 119 | 1.85e-17 | 73.9 |
| MsG0280006483.01.T01 | AT5G48570 | 40.000 | 110 | 60 | 4 | 2 | 110 | 47 | 151 | 9.72e-16 | 72.0 |
| MsG0280006483.01.T01 | AT3G25230 | 40.367 | 109 | 59 | 4 | 2 | 109 | 39 | 142 | 4.68e-15 | 70.1 |
| MsG0280006483.01.T01 | AT3G25230 | 40.367 | 109 | 59 | 4 | 2 | 109 | 39 | 142 | 6.01e-15 | 69.7 |
| MsG0280006483.01.T01 | AT4G25340 | 42.157 | 102 | 52 | 4 | 12 | 112 | 382 | 477 | 1.61e-14 | 68.6 |
| MsG0280006483.01.T01 | AT5G05420 | 41.176 | 102 | 52 | 4 | 12 | 112 | 49 | 143 | 2.40e-13 | 62.4 |
| MsG0280006483.01.T01 | AT5G45680 | 40.367 | 109 | 51 | 4 | 11 | 109 | 101 | 205 | 4.61e-13 | 62.8 |
Find 53 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCTCCAATATTAATATT+TGG | 0.175040 | 2:-2588681 | MsG0280006483.01.T01:three_prime_UTR |
| ATTTGTTAATCAATATTATT+TGG | 0.178121 | 2:-2588622 | MsG0280006483.01.T01:three_prime_UTR |
| CGCTAGTGGCTTTCCTGCTT+GGG | 0.208113 | 2:-2588914 | MsG0280006483.01.T01:CDS |
| GTGACCTTTCTCAGAAATTC+TGG | 0.269473 | 2:-2590068 | MsG0280006483.01.T01:CDS |
| GAAATAAAAGAACAATCTTT+AGG | 0.287880 | 2:+2588536 | None:intergenic |
| TGCTCTCCTGATTATGCTTA+TGG | 0.301017 | 2:-2588937 | MsG0280006483.01.T01:CDS |
| TACCGAAGGACAAACTAAAA+AGG | 0.302215 | 2:+2588832 | None:intergenic |
| TCGGAGAAGTTGCTCGTCTT+CGG | 0.329775 | 2:-2589518 | MsG0280006483.01.T01:CDS |
| AATACAACCCAACTCTGTTT+TGG | 0.332199 | 2:-2588890 | MsG0280006483.01.T01:CDS |
| TAACAAATTGATAAAGAAAC+AGG | 0.335116 | 2:+2588637 | None:intergenic |
| GCGCTAGTGGCTTTCCTGCT+TGG | 0.337892 | 2:-2588915 | MsG0280006483.01.T01:CDS |
| CGGAGAAGTTGCTCGTCTTC+GGG | 0.345948 | 2:-2589517 | MsG0280006483.01.T01:intron |
| ACACTACCAAATATTAATAT+TGG | 0.352985 | 2:+2588675 | None:intergenic |
| AATCCATTCACTTTCAAAAT+CGG | 0.376739 | 2:-2589938 | MsG0280006483.01.T01:CDS |
| TATAAATCCATTAACAAATA+CGG | 0.383450 | 2:+2588480 | None:intergenic |
| GAAAGAAGGAAGAAGAAAGA+TGG | 0.415250 | 2:-2590345 | MsG0280006483.01.T01:exon |
| AAAGAAGGAAGAAGAAAGAT+GGG | 0.430314 | 2:-2590344 | MsG0280006483.01.T01:exon |
| GTTGGCTTAGGACCGTTTCC+AGG | 0.435084 | 2:+2590299 | None:intergenic |
| TATTTGGCAATGCATGGTCT+TGG | 0.437640 | 2:-2588606 | MsG0280006483.01.T01:three_prime_UTR |
| GAGAGAGTGCTCACCGTATC+CGG | 0.441515 | 2:+2590247 | None:intergenic |
| ATAAATCCATTAACAAATAC+GGG | 0.444663 | 2:+2588481 | None:intergenic |
| CTAGCGCCATAAGCATAATC+AGG | 0.449393 | 2:+2588931 | None:intergenic |
| TCAAACTCCAAAACAGAGTT+GGG | 0.461799 | 2:+2588883 | None:intergenic |
| CTCAAACTCCAAAACAGAGT+TGG | 0.473985 | 2:+2588882 | None:intergenic |
| GGTGTCATTGGCATGCAAAT+CGG | 0.478078 | 2:-2589537 | MsG0280006483.01.T01:CDS |
| CAAATCGTTCGTCCTGGAAA+CGG | 0.494067 | 2:-2590311 | MsG0280006483.01.T01:CDS |
| AAAGTGAATGGATTCTGGCC+AGG | 0.495829 | 2:+2589947 | None:intergenic |
| GCAGATATCACTCAAAGTGC+AGG | 0.504337 | 2:+2588754 | None:intergenic |
| ACCTCCAGAATTTCTGAGAA+AGG | 0.516160 | 2:+2590064 | None:intergenic |
| ACTGTCCACTGCACCGGATA+CGG | 0.518197 | 2:-2590260 | MsG0280006483.01.T01:intron |
| TTCACTTTCAAAATCGGCAA+AGG | 0.528436 | 2:-2589932 | MsG0280006483.01.T01:CDS |
| GGATGGGATGAAGGTGTCAT+TGG | 0.529844 | 2:-2589549 | MsG0280006483.01.T01:CDS |
| CAATATTATTTGGCAATGCA+TGG | 0.531070 | 2:-2588612 | MsG0280006483.01.T01:three_prime_UTR |
| GCATAAGATCGAGTGAAAGA+AGG | 0.537335 | 2:-2590359 | MsG0280006483.01.T01:five_prime_UTR |
| ATACATGTCCACAGAGATGT+AGG | 0.540488 | 2:+2588786 | None:intergenic |
| TATTACAGTACAAAAGATCC+TGG | 0.543772 | 2:-2589965 | MsG0280006483.01.T01:intron |
| ATTGGAGAGTTTGAGATCAG+TGG | 0.545467 | 2:+2588693 | None:intergenic |
| GATTATGCTTATGGCGCTAG+TGG | 0.545830 | 2:-2588928 | MsG0280006483.01.T01:CDS |
| AACGGTCCTAAGCCAACTCC+TGG | 0.550713 | 2:-2590293 | MsG0280006483.01.T01:CDS |
| AACGTCACTGTCCACTGCAC+CGG | 0.551030 | 2:-2590266 | MsG0280006483.01.T01:CDS |
| TTGTGTGTAGGATGGGATGA+AGG | 0.556041 | 2:-2589558 | MsG0280006483.01.T01:intron |
| TTGGGTTGTATTCCCCAAGC+AGG | 0.558631 | 2:+2588901 | None:intergenic |
| GAGAAGCAAATCGTTCGTCC+TGG | 0.559322 | 2:-2590317 | MsG0280006483.01.T01:CDS |
| CAGATATCACTCAAAGTGCA+GGG | 0.569024 | 2:+2588755 | None:intergenic |
| GCTAGTGGCTTTCCTGCTTG+GGG | 0.575669 | 2:-2588913 | MsG0280006483.01.T01:CDS |
| ACCTTTCTCAGAAATTCTGG+AGG | 0.582702 | 2:-2590065 | MsG0280006483.01.T01:intron |
| GGCAAAGGTTCTGTCATCAA+AGG | 0.586910 | 2:-2589917 | MsG0280006483.01.T01:intron |
| GCTCACCGTATCCGGTGCAG+TGG | 0.596990 | 2:+2590255 | None:intergenic |
| TCATAATAATAATTTACCGA+AGG | 0.631893 | 2:+2588818 | None:intergenic |
| TTGAGTATCCTACATCTCTG+TGG | 0.668816 | 2:-2588794 | MsG0280006483.01.T01:three_prime_UTR |
| AACAAATTGATAAAGAAACA+GGG | 0.676496 | 2:+2588638 | None:intergenic |
| AGATATCACTCAAAGTGCAG+GGG | 0.704961 | 2:+2588756 | None:intergenic |
| TAAATCCATTAACAAATACG+GGG | 0.738816 | 2:+2588482 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATATTAAAAACAAAAAA+TGG | + | Chr2:2588884-2588903 | None:intergenic | 10.0% |
| !! | CTAATTTAATTCAAATATAA+AGG | + | Chr2:2588718-2588737 | None:intergenic | 10.0% |
| !!! | ATTTGTTAATCAATATTATT+TGG | - | Chr2:2590269-2590288 | MsG0280006483.01.T01:CDS | 10.0% |
| !! | ATATAAGCTAAAATAGTTTA+TGG | + | Chr2:2589541-2589560 | None:intergenic | 15.0% |
| !! | TAAAATGAAAGATAAGAAAT+GGG | + | Chr2:2588690-2588709 | None:intergenic | 15.0% |
| !! | TTAAAATGAAAGATAAGAAA+TGG | + | Chr2:2588691-2588710 | None:intergenic | 15.0% |
| !! | AAAATGAAAGATAAGAAATG+GGG | + | Chr2:2588689-2588708 | None:intergenic | 20.0% |
| !! | AACAAATTGATAAAGAAACA+GGG | + | Chr2:2590256-2590275 | None:intergenic | 20.0% |
| !! | AACTCTCCAATATTAATATT+TGG | - | Chr2:2590210-2590229 | MsG0280006483.01.T01:intron | 20.0% |
| !! | AATGGAAATTCAACATATTA+AGG | + | Chr2:2589719-2589738 | None:intergenic | 20.0% |
| !! | ACACTACCAAATATTAATAT+TGG | + | Chr2:2590219-2590238 | None:intergenic | 20.0% |
| !! | ATTTCTATGATAAGTGTTTA+TGG | - | Chr2:2589657-2589676 | MsG0280006483.01.T01:intron | 20.0% |
| !! | GAAATAAAAGAACAATCTTT+AGG | + | Chr2:2590358-2590377 | None:intergenic | 20.0% |
| !! | GTTGATACTTTGTTAAATAA+TGG | - | Chr2:2589885-2589904 | MsG0280006483.01.T01:intron | 20.0% |
| !! | TAACAAATTGATAAAGAAAC+AGG | + | Chr2:2590257-2590276 | None:intergenic | 20.0% |
| !! | TCATAATAATAATTTACCGA+AGG | + | Chr2:2590076-2590095 | None:intergenic | 20.0% |
| !!! | TACTACTTTTACTTTATTTC+TGG | - | Chr2:2589228-2589247 | MsG0280006483.01.T01:intron | 20.0% |
| ! | AAACAAAAAATGGAATGACA+AGG | + | Chr2:2588874-2588893 | None:intergenic | 25.0% |
| ! | AACAAAAAATGGAATGACAA+GGG | + | Chr2:2588873-2588892 | None:intergenic | 25.0% |
| ! | AATCCATTCACTTTCAAAAT+CGG | - | Chr2:2588953-2588972 | MsG0280006483.01.T01:intron | 25.0% |
| !!! | AAATGGGGTTTTTAGTTTTA+GGG | + | Chr2:2588674-2588693 | None:intergenic | 25.0% |
| !!! | TTCAGTTTATATCGTTTTTG+TGG | - | Chr2:2590330-2590349 | MsG0280006483.01.T01:exon | 25.0% |
| AAAGAAGGAAGAAGAAAGAT+GGG | - | Chr2:2588547-2588566 | MsG0280006483.01.T01:three_prime_UTR | 30.0% | |
| CAACATATTAAGGTCATGTT+TGG | + | Chr2:2589709-2589728 | None:intergenic | 30.0% | |
| CAATATTATTTGGCAATGCA+TGG | - | Chr2:2590279-2590298 | MsG0280006483.01.T01:CDS | 30.0% | |
| TATTACAGTACAAAAGATCC+TGG | - | Chr2:2588926-2588945 | MsG0280006483.01.T01:CDS | 30.0% | |
| TGAGTAAAAACAAACAGCAA+TGG | + | Chr2:2589737-2589756 | None:intergenic | 30.0% | |
| ! | GTGTAGAGTTTTTACACTAT+CGG | - | Chr2:2589046-2589065 | MsG0280006483.01.T01:intron | 30.0% |
| ! | TTTTTACTCACACACATACA+AGG | - | Chr2:2589747-2589766 | MsG0280006483.01.T01:intron | 30.0% |
| !! | TTATAACTTGTTGCCACTTT+GGG | - | Chr2:2589425-2589444 | MsG0280006483.01.T01:intron | 30.0% |
| !! | TTTATAACTTGTTGCCACTT+TGG | - | Chr2:2589424-2589443 | MsG0280006483.01.T01:intron | 30.0% |
| !! | TTTTGAAAGTGAATGGATTC+TGG | + | Chr2:2588952-2588971 | None:intergenic | 30.0% |
| !!! | AACCTTTTTAGTTTGTCCTT+CGG | - | Chr2:2590057-2590076 | MsG0280006483.01.T01:intron | 30.0% |
| !!! | GAAATGGGGTTTTTAGTTTT+AGG | + | Chr2:2588675-2588694 | None:intergenic | 30.0% |
| AATTATCTTGTCCCCGTATT+TGG | - | Chr2:2590398-2590417 | MsG0280006483.01.T01:five_prime_UTR | 35.0% | |
| CAATGTACATTCAGATGTGT+TGG | - | Chr2:2589274-2589293 | MsG0280006483.01.T01:intron | 35.0% | |
| CAATTCAATAAAGCCCAAAG+TGG | + | Chr2:2589441-2589460 | None:intergenic | 35.0% | |
| GAAAGAAGGAAGAAGAAAGA+TGG | - | Chr2:2588546-2588565 | MsG0280006483.01.T01:three_prime_UTR | 35.0% | |
| TACCGAAGGACAAACTAAAA+AGG | + | Chr2:2590062-2590081 | None:intergenic | 35.0% | |
| TATCAACAAGGTCAATGACA+GGG | + | Chr2:2589925-2589944 | None:intergenic | 35.0% | |
| TCAAACTCCAAAACAGAGTT+GGG | + | Chr2:2590011-2590030 | None:intergenic | 35.0% | |
| TTACACACTTGCGAAACTTT+AGG | + | Chr2:2589138-2589157 | None:intergenic | 35.0% | |
| TTATCAACAAGGTCAATGAC+AGG | + | Chr2:2589926-2589945 | None:intergenic | 35.0% | |
| TTCACTTTCAAAATCGGCAA+AGG | - | Chr2:2588959-2588978 | MsG0280006483.01.T01:intron | 35.0% | |
| ! | AATACAACCCAACTCTGTTT+TGG | - | Chr2:2590001-2590020 | MsG0280006483.01.T01:intron | 35.0% |
| ! | TGATGATGATCAGGCAAAAA+CGG | - | Chr2:2588801-2588820 | MsG0280006483.01.T01:three_prime_UTR | 35.0% |
| !! | CACTTTGGGCTTTATTGAAT+TGG | - | Chr2:2589439-2589458 | MsG0280006483.01.T01:intron | 35.0% |
| !! | TGATTGTGTTGATGATGATC+AGG | - | Chr2:2588792-2588811 | MsG0280006483.01.T01:three_prime_UTR | 35.0% |
| !!! | TGTTTTGGAGTTTGAGATTG+AGG | - | Chr2:2590016-2590035 | MsG0280006483.01.T01:intron | 35.0% |
| !!! | TTGCCGATTTTGAAAGTGAA+TGG | + | Chr2:2588959-2588978 | None:intergenic | 35.0% |
| ACCTTTCTCAGAAATTCTGG+AGG | - | Chr2:2588826-2588845 | MsG0280006483.01.T01:three_prime_UTR | 40.0% | |
| ACTATCTGTTGTGTGTAGGA+TGG | - | Chr2:2589325-2589344 | MsG0280006483.01.T01:intron | 40.0% | |
| AGATATCACTCAAAGTGCAG+GGG | + | Chr2:2590138-2590157 | None:intergenic | 40.0% | |
| ATACATGTCCACAGAGATGT+AGG | + | Chr2:2590108-2590127 | None:intergenic | 40.0% | |
| CAGATATCACTCAAAGTGCA+GGG | + | Chr2:2590139-2590158 | None:intergenic | 40.0% | |
| CTATCTGTTGTGTGTAGGAT+GGG | - | Chr2:2589326-2589345 | MsG0280006483.01.T01:intron | 40.0% | |
| CTCAAACTCCAAAACAGAGT+TGG | + | Chr2:2590012-2590031 | None:intergenic | 40.0% | |
| GCACTGCAAGATTATCAACA+AGG | + | Chr2:2589937-2589956 | None:intergenic | 40.0% | |
| GCATAAGATCGAGTGAAAGA+AGG | - | Chr2:2588532-2588551 | MsG0280006483.01.T01:three_prime_UTR | 40.0% | |
| GTGACCTTTCTCAGAAATTC+TGG | - | Chr2:2588823-2588842 | MsG0280006483.01.T01:three_prime_UTR | 40.0% | |
| TATTTGGCAATGCATGGTCT+TGG | - | Chr2:2590285-2590304 | MsG0280006483.01.T01:CDS | 40.0% | |
| TCCAACTATCTGTTGTGTGT+AGG | - | Chr2:2589321-2589340 | MsG0280006483.01.T01:intron | 40.0% | |
| TCCTACACACAACAGATAGT+TGG | + | Chr2:2589325-2589344 | None:intergenic | 40.0% | |
| TGCTCTCCTGATTATGCTTA+TGG | - | Chr2:2589954-2589973 | MsG0280006483.01.T01:CDS | 40.0% | |
| TTGAGTATCCTACATCTCTG+TGG | - | Chr2:2590097-2590116 | MsG0280006483.01.T01:intron | 40.0% | |
| ! | ACCTCCAGAATTTCTGAGAA+AGG | + | Chr2:2588830-2588849 | None:intergenic | 40.0% |
| ! | ATTGGAGAGTTTGAGATCAG+TGG | + | Chr2:2590201-2590220 | None:intergenic | 40.0% |
| ! | TTCTCAGAAATTCTGGAGGT+TGG | - | Chr2:2588830-2588849 | MsG0280006483.01.T01:three_prime_UTR | 40.0% |
| !! | CTTGCGAAACTTTAGGACTT+AGG | + | Chr2:2589131-2589150 | None:intergenic | 40.0% |
| !! | GAAACTTTAGGACTTAGGAG+TGG | + | Chr2:2589126-2589145 | None:intergenic | 40.0% |
| ATACACGCGACTCGATTAAG+TGG | + | Chr2:2589780-2589799 | None:intergenic | 45.0% | |
| CAAATCGTTCGTCCTGGAAA+CGG | - | Chr2:2588580-2588599 | MsG0280006483.01.T01:three_prime_UTR | 45.0% | |
| CTAGCGCCATAAGCATAATC+AGG | + | Chr2:2589963-2589982 | None:intergenic | 45.0% | |
| GATTATGCTTATGGCGCTAG+TGG | - | Chr2:2589963-2589982 | MsG0280006483.01.T01:intron | 45.0% | |
| GCAGATATCACTCAAAGTGC+AGG | + | Chr2:2590140-2590159 | None:intergenic | 45.0% | |
| GGCAAAGGTTCTGTCATCAA+AGG | - | Chr2:2588974-2588993 | MsG0280006483.01.T01:intron | 45.0% | |
| TGGATGCGCAGGTCAATTAA+GGG | + | Chr2:2589689-2589708 | None:intergenic | 45.0% | |
| TTGGATGCGCAGGTCAATTA+AGG | + | Chr2:2589690-2589709 | None:intergenic | 45.0% | |
| TTGTGTGTAGGATGGGATGA+AGG | - | Chr2:2589333-2589352 | MsG0280006483.01.T01:intron | 45.0% | |
| ! | AAAGTGAATGGATTCTGGCC+AGG | + | Chr2:2588947-2588966 | None:intergenic | 45.0% |
| !! | GGTGTCATTGGCATGCAAAT+CGG | - | Chr2:2589354-2589373 | MsG0280006483.01.T01:intron | 45.0% |
| !! | TTTTGACCAGGAGTTGGCTT+AGG | + | Chr2:2588607-2588626 | None:intergenic | 45.0% |
| !! | TAATTTAATTCAAATATAAA+GGG | + | Chr2:2588717-2588736 | None:intergenic | 5.0% |
| AAGGTCATGTTTGGATGCGC+AGG | + | Chr2:2589700-2589719 | None:intergenic | 50.0% | |
| GAGAAGCAAATCGTTCGTCC+TGG | - | Chr2:2588574-2588593 | MsG0280006483.01.T01:three_prime_UTR | 50.0% | |
| TCGGAGAAGTTGCTCGTCTT+CGG | - | Chr2:2589373-2589392 | MsG0280006483.01.T01:intron | 50.0% | |
| ! | TTGGGTTGTATTCCCCAAGC+AGG | + | Chr2:2589993-2590012 | None:intergenic | 50.0% |
| !! | GGATGGGATGAAGGTGTCAT+TGG | - | Chr2:2589342-2589361 | MsG0280006483.01.T01:intron | 50.0% |
| !! | GTGACGTTTTGACCAGGAGT+TGG | + | Chr2:2588613-2588632 | None:intergenic | 50.0% |
| !! | TGGACAGTGACGTTTTGACC+AGG | + | Chr2:2588619-2588638 | None:intergenic | 50.0% |
| AACGGTCCTAAGCCAACTCC+TGG | - | Chr2:2588598-2588617 | MsG0280006483.01.T01:three_prime_UTR | 55.0% | |
| AACGTCACTGTCCACTGCAC+CGG | - | Chr2:2588625-2588644 | MsG0280006483.01.T01:three_prime_UTR | 55.0% | |
| ACTGTCCACTGCACCGGATA+CGG | - | Chr2:2588631-2588650 | MsG0280006483.01.T01:three_prime_UTR | 55.0% | |
| CGCTAGTGGCTTTCCTGCTT+GGG | - | Chr2:2589977-2589996 | MsG0280006483.01.T01:intron | 55.0% | |
| CGGAGAAGTTGCTCGTCTTC+GGG | - | Chr2:2589374-2589393 | MsG0280006483.01.T01:intron | 55.0% | |
| GCTAGTGGCTTTCCTGCTTG+GGG | - | Chr2:2589978-2589997 | MsG0280006483.01.T01:intron | 55.0% | |
| ! | GTTGGCTTAGGACCGTTTCC+AGG | + | Chr2:2588595-2588614 | None:intergenic | 55.0% |
| !! | GAGAGAGTGCTCACCGTATC+CGG | + | Chr2:2588647-2588666 | None:intergenic | 55.0% |
| GCGCTAGTGGCTTTCCTGCT+TGG | - | Chr2:2589976-2589995 | MsG0280006483.01.T01:intron | 60.0% | |
| GCTCACCGTATCCGGTGCAG+TGG | + | Chr2:2588639-2588658 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 2588494 | 2590419 | 2588494 | ID=MsG0280006483.01;Name=MsG0280006483.01 |
| Chr2 | mRNA | 2588494 | 2590419 | 2588494 | ID=MsG0280006483.01.T01;Parent=MsG0280006483.01;Name=MsG0280006483.01.T01;_AED=0.35;_eAED=0.35;_QI=71|1|1|1|1|1|5|364|112 |
| Chr2 | exon | 2588494 | 2588959 | 2588494 | ID=MsG0280006483.01.T01:exon:494;Parent=MsG0280006483.01.T01 |
| Chr2 | exon | 2589518 | 2589570 | 2589518 | ID=MsG0280006483.01.T01:exon:493;Parent=MsG0280006483.01.T01 |
| Chr2 | exon | 2589918 | 2589979 | 2589918 | ID=MsG0280006483.01.T01:exon:492;Parent=MsG0280006483.01.T01 |
| Chr2 | exon | 2590066 | 2590099 | 2590066 | ID=MsG0280006483.01.T01:exon:491;Parent=MsG0280006483.01.T01 |
| Chr2 | exon | 2590261 | 2590419 | 2590261 | ID=MsG0280006483.01.T01:exon:490;Parent=MsG0280006483.01.T01 |
| Chr2 | five_prime_UTR | 2590349 | 2590419 | 2590349 | ID=MsG0280006483.01.T01:five_prime_utr;Parent=MsG0280006483.01.T01 |
| Chr2 | CDS | 2590261 | 2590348 | 2590261 | ID=MsG0280006483.01.T01:cds;Parent=MsG0280006483.01.T01 |
| Chr2 | CDS | 2590066 | 2590099 | 2590066 | ID=MsG0280006483.01.T01:cds;Parent=MsG0280006483.01.T01 |
| Chr2 | CDS | 2589918 | 2589979 | 2589918 | ID=MsG0280006483.01.T01:cds;Parent=MsG0280006483.01.T01 |
| Chr2 | CDS | 2589518 | 2589570 | 2589518 | ID=MsG0280006483.01.T01:cds;Parent=MsG0280006483.01.T01 |
| Chr2 | CDS | 2588858 | 2588959 | 2588858 | ID=MsG0280006483.01.T01:cds;Parent=MsG0280006483.01.T01 |
| Chr2 | three_prime_UTR | 2588494 | 2588857 | 2588494 | ID=MsG0280006483.01.T01:three_prime_utr;Parent=MsG0280006483.01.T01 |
| Gene Sequence |
| Protein sequence |
