Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017540.01.T01 | XP_003603529.1 | 91.429 | 140 | 7 | 2 | 1 | 136 | 4 | 142 | 4.95E-85 | 255 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017540.01.T01 | Q9FE62 | 88.571 | 140 | 11 | 2 | 1 | 136 | 4 | 142 | 4.80E-86 | 250 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017540.01.T01 | A0A2K3NA50 | 91.429 | 140 | 7 | 2 | 1 | 136 | 4 | 142 | 2.37e-85 | 255 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047791.01 | MsG0380017540.01 | 0.805269 | 1.448106e-49 | 7.627968e-47 |
| MsG0080048137.01 | MsG0380017540.01 | 0.800942 | 1.137278e-48 | 5.363868e-46 |
| MsG0080048152.01 | MsG0380017540.01 | 0.809866 | 1.530784e-50 | 9.090266e-48 |
| MsG0180000114.01 | MsG0380017540.01 | 0.809381 | 1.946262e-50 | 1.141014e-47 |
| MsG0180000611.01 | MsG0380017540.01 | 0.804968 | 1.674297e-49 | 8.751864e-47 |
| MsG0180000806.01 | MsG0380017540.01 | 0.825692 | 4.079928e-54 | 3.745910e-51 |
| MsG0180000982.01 | MsG0380017540.01 | 0.838277 | 3.164274e-57 | 4.216912e-54 |
| MsG0180001887.01 | MsG0380017540.01 | 0.805440 | 1.333366e-49 | 7.054527e-47 |
| MsG0180002547.01 | MsG0380017540.01 | 0.852567 | 4.242353e-61 | 8.900897e-58 |
| MsG0180002794.01 | MsG0380017540.01 | 0.808700 | 2.722374e-50 | 1.567222e-47 |
| MsG0180004861.01 | MsG0380017540.01 | 0.889454 | 2.388391e-73 | 1.928034e-69 |
| MsG0180005169.01 | MsG0380017540.01 | 0.853972 | 1.677505e-61 | 3.689740e-58 |
| MsG0180005990.01 | MsG0380017540.01 | 0.808252 | 3.393719e-50 | 1.931065e-47 |
| MsG0280010595.01 | MsG0380017540.01 | 0.809589 | 1.756047e-50 | 1.035221e-47 |
| MsG0280011371.01 | MsG0380017540.01 | 0.811943 | 5.436571e-51 | 3.410568e-48 |
| MsG0380011581.01 | MsG0380017540.01 | 0.826860 | 2.151472e-54 | 2.042128e-51 |
| MsG0380011747.01 | MsG0380017540.01 | 0.834045 | 3.760327e-56 | 4.410164e-53 |
| MsG0380013085.01 | MsG0380017540.01 | 0.836779 | 7.659176e-57 | 9.752117e-54 |
| MsG0380015027.01 | MsG0380017540.01 | 0.810366 | 1.194596e-50 | 7.187131e-48 |
| MsG0380015435.01 | MsG0380017540.01 | 0.850953 | 1.216157e-60 | 2.422945e-57 |
| MsG0380016133.01 | MsG0380017540.01 | 0.877067 | 8.457862e-69 | 4.196140e-65 |
| MsG0380016290.01 | MsG0380017540.01 | 0.823653 | 1.233387e-53 | 1.068577e-50 |
| MsG0380016559.01 | MsG0380017540.01 | 0.869137 | 3.877305e-66 | 1.439249e-62 |
| MsG0380016560.01 | MsG0380017540.01 | 0.873765 | 1.141238e-67 | 5.011046e-64 |
| MsG0380016604.01 | MsG0380017540.01 | 0.825072 | 5.722855e-54 | 5.162337e-51 |
| MsG0380016701.01 | MsG0380017540.01 | 0.824890 | 6.315805e-54 | 5.668075e-51 |
| MsG0380016775.01 | MsG0380017540.01 | 0.809792 | 1.588168e-50 | 9.412947e-48 |
| MsG0380017085.01 | MsG0380017540.01 | 0.835837 | 1.329573e-56 | 1.645441e-53 |
| MsG0380017540.01 | MsG0380017947.01 | 0.839973 | 1.149709e-57 | 1.614413e-54 |
| MsG0380017540.01 | MsG0380017979.01 | 0.825934 | 3.574366e-54 | 3.304606e-51 |
| MsG0380017540.01 | MsG0380018033.01 | 0.848177 | 7.235273e-60 | 1.316522e-56 |
| MsG0380017540.01 | MsG0380018044.01 | 0.875391 | 3.198596e-68 | 1.490594e-64 |
| MsG0380017540.01 | MsG0480018110.01 | 0.812851 | 3.443247e-51 | 2.213083e-48 |
| MsG0380017540.01 | MsG0480018319.01 | 0.819298 | 1.249835e-52 | 9.579719e-50 |
| MsG0380017540.01 | MsG0480021041.01 | 0.811357 | 7.289243e-51 | 4.502200e-48 |
| MsG0380017540.01 | MsG0480021706.01 | 0.811051 | 8.492980e-51 | 5.203987e-48 |
| MsG0380017540.01 | MsG0480021750.01 | 0.805434 | 1.337425e-49 | 7.074948e-47 |
| MsG0380017540.01 | MsG0480021768.01 | 0.811489 | 6.824744e-51 | 4.230384e-48 |
| MsG0380017540.01 | MsG0480021838.01 | 0.828215 | 1.017476e-54 | 1.004804e-51 |
| MsG0380017540.01 | MsG0480022223.01 | 0.837680 | 4.505975e-57 | 5.897648e-54 |
| MsG0380017540.01 | MsG0480022960.01 | 0.861686 | 8.614759e-64 | 2.457493e-60 |
| MsG0380017540.01 | MsG0480023162.01 | 0.805204 | 1.494049e-49 | 7.857043e-47 |
| MsG0380017540.01 | MsG0480023221.01 | 0.848467 | 6.017595e-60 | 1.105504e-56 |
| MsG0380017540.01 | MsG0480023738.01 | 0.858210 | 9.630111e-63 | 2.438892e-59 |
| MsG0380017540.01 | MsG0480023771.01 | 0.807433 | 5.067428e-50 | 2.822056e-47 |
| MsG0380017540.01 | MsG0480023909.01 | 0.835976 | 1.226260e-56 | 1.523945e-53 |
| MsG0380017540.01 | MsG0580024084.01 | 0.834286 | 3.272969e-56 | 3.866579e-53 |
| MsG0380017540.01 | MsG0580024619.01 | 0.827573 | 1.452182e-54 | 1.407294e-51 |
| MsG0380017540.01 | MsG0580024698.01 | 0.846223 | 2.485990e-59 | 4.248766e-56 |
| MsG0380017540.01 | MsG0580024725.01 | 0.808342 | 3.246373e-50 | 1.851612e-47 |
| MsG0380017540.01 | MsG0580024727.01 | 0.874834 | 4.954025e-68 | 2.263620e-64 |
| MsG0380017540.01 | MsG0580025268.01 | 0.863801 | 1.921018e-64 | 5.898303e-61 |
| MsG0380017540.01 | MsG0580025756.01 | 0.840238 | 9.807934e-58 | 1.388471e-54 |
| MsG0380017540.01 | MsG0580026301.01 | 0.837492 | 5.034043e-57 | 6.550396e-54 |
| MsG0380017540.01 | MsG0580026485.01 | 0.829879 | 4.021777e-55 | 4.169822e-52 |
| MsG0380017540.01 | MsG0580028021.01 | 0.804137 | 2.495808e-49 | 1.276916e-46 |
| MsG0380017540.01 | MsG0580028582.01 | 0.812254 | 4.650712e-51 | 2.942506e-48 |
| MsG0380017540.01 | MsG0580028597.01 | 0.808654 | 2.785253e-50 | 1.601452e-47 |
| MsG0380017540.01 | MsG0580029879.01 | 0.842887 | 1.965516e-58 | 3.021969e-55 |
| MsG0380017540.01 | MsG0580030249.01 | 0.840504 | 8.356814e-58 | 1.192851e-54 |
| MsG0380017540.01 | MsG0680030415.01 | 0.818099 | 2.338790e-52 | 1.734291e-49 |
| MsG0380017540.01 | MsG0680030555.01 | 0.818282 | 2.126243e-52 | 1.584698e-49 |
| MsG0380017540.01 | MsG0680031828.01 | 0.803916 | 2.773595e-49 | 1.411130e-46 |
| MsG0380017540.01 | MsG0680035577.01 | 0.809919 | 1.491360e-50 | 8.868375e-48 |
| MsG0380017540.01 | MsG0680035877.01 | 0.847562 | 1.069380e-59 | 1.908347e-56 |
| MsG0380017540.01 | MsG0680035888.01 | 0.833720 | 4.534391e-56 | 5.265861e-53 |
| MsG0380017540.01 | MsG0780036288.01 | 0.811177 | 7.975517e-51 | 4.902972e-48 |
| MsG0380017540.01 | MsG0780037124.01 | 0.803201 | 3.903662e-49 | 1.949740e-46 |
| MsG0380017540.01 | MsG0780038948.01 | 0.809453 | 1.877939e-50 | 1.103021e-47 |
| MsG0380017540.01 | MsG0780039442.01 | 0.826326 | 2.884761e-54 | 2.696737e-51 |
| MsG0380017540.01 | MsG0780039848.01 | 0.809503 | 1.832015e-50 | 1.077489e-47 |
| MsG0380017540.01 | MsG0780040545.01 | 0.813171 | 2.929756e-51 | 1.899274e-48 |
| MsG0380017540.01 | MsG0780040569.01 | 0.806733 | 7.128733e-50 | 3.898577e-47 |
| MsG0380017540.01 | MsG0780041223.01 | 0.825810 | 3.827053e-54 | 3.525583e-51 |
| MsG0380017540.01 | MsG0780041391.01 | 0.803929 | 2.756930e-49 | 1.403118e-46 |
| MsG0380017540.01 | MsG0780041392.01 | 0.820247 | 7.588679e-53 | 5.972708e-50 |
| MsG0380017540.01 | MsG0780041435.01 | 0.828407 | 9.148579e-55 | 9.085413e-52 |
| MsG0380017540.01 | MsG0880042033.01 | 0.864257 | 1.384909e-64 | 4.320566e-61 |
| MsG0380017540.01 | MsG0880043477.01 | 0.821685 | 3.540707e-53 | 2.900664e-50 |
| MsG0380017540.01 | MsG0880044975.01 | 0.824173 | 9.315073e-54 | 8.188967e-51 |
| MsG0380017540.01 | MsG0880045017.01 | 0.823982 | 1.032870e-53 | 9.031146e-51 |
| MsG0380017540.01 | MsG0880045119.01 | 0.807379 | 5.203226e-50 | 2.893676e-47 |
| MsG0380017540.01 | MsG0880045656.01 | 0.806711 | 7.203207e-50 | 3.937101e-47 |
| MsG0380017540.01 | MsG0880045951.01 | 0.800267 | 1.561873e-48 | 7.241037e-46 |
| MsG0380017540.01 | MsG0880045965.01 | 0.800578 | 1.349831e-48 | 6.307452e-46 |
| MsG0380017540.01 | MsG0880046089.01 | 0.832249 | 1.052756e-55 | 1.170000e-52 |
| MsG0380017540.01 | MsG0880047763.01 | 0.807229 | 5.597943e-50 | 3.101095e-47 |
| MsG0280006483.01 | MsG0380017540.01 | 0.844927 | 5.582561e-59 | 9.152771e-56 |
| MsG0280006593.01 | MsG0380017540.01 | 0.846180 | 2.553641e-59 | 4.358460e-56 |
| MsG0280007787.01 | MsG0380017540.01 | 0.820815 | 5.620460e-53 | 4.493964e-50 |
| MsG0280007847.01 | MsG0380017540.01 | 0.879451 | 1.232726e-69 | 6.687104e-66 |
| MsG0280008429.01 | MsG0380017540.01 | 0.801586 | 8.397349e-49 | 4.025104e-46 |
| MsG0280009575.01 | MsG0380017540.01 | 0.825155 | 5.469810e-54 | 4.945968e-51 |
| MsG0280010434.01 | MsG0380017540.01 | 0.802017 | 6.848306e-49 | 3.318836e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017540.01.T01 | MTR_3g108770 | 91.429 | 140 | 7 | 2 | 1 | 136 | 4 | 142 | 6.00e-89 | 255 |
| MsG0380017540.01.T01 | MTR_1g045900 | 90.714 | 140 | 8 | 2 | 1 | 136 | 4 | 142 | 1.98e-88 | 253 |
| MsG0380017540.01.T01 | MTR_4g075190 | 84.286 | 140 | 17 | 2 | 1 | 136 | 4 | 142 | 5.24e-84 | 242 |
| MsG0380017540.01.T01 | MTR_5g075850 | 74.074 | 54 | 12 | 1 | 85 | 136 | 1 | 54 | 1.24e-22 | 84.3 |
| MsG0380017540.01.T01 | MTR_5g075820 | 71.111 | 45 | 13 | 0 | 92 | 136 | 110 | 154 | 2.17e-17 | 73.9 |
| MsG0380017540.01.T01 | MTR_1g054195 | 68.889 | 45 | 13 | 1 | 92 | 135 | 175 | 219 | 6.59e-16 | 71.6 |
| MsG0380017540.01.T01 | MTR_1g080840 | 31.667 | 120 | 73 | 4 | 1 | 113 | 4 | 121 | 7.77e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017540.01.T01 | AT5G08290 | 88.571 | 140 | 11 | 2 | 1 | 136 | 4 | 142 | 4.90e-87 | 250 |
| MsG0380017540.01.T01 | AT5G08290 | 97.059 | 102 | 3 | 0 | 35 | 136 | 1 | 102 | 3.79e-71 | 208 |
| MsG0380017540.01.T01 | AT3G24730 | 36.458 | 96 | 55 | 3 | 36 | 127 | 50 | 143 | 8.29e-14 | 64.7 |
Find 54 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACAGTTATGTTCTTCTTT+AGG | 0.229575 | 3:-97640101 | MsG0380017540.01.T01:CDS |
| GTACCAAATGAGGTAGATTT+TGG | 0.235671 | 3:+97639845 | None:intergenic |
| CATAAAACATAAATCTTTGT+TGG | 0.327339 | 3:+97639704 | None:intergenic |
| GTACTTGGTGGAGTAATCTT+TGG | 0.329915 | 3:+97639939 | None:intergenic |
| GACAGTTACACACTTGATAA+AGG | 0.331693 | 3:+97639820 | None:intergenic |
| GAAACAACAACAAGATCAAT+TGG | 0.342414 | 3:-97640047 | MsG0380017540.01.T01:CDS |
| TGTCCAAAATCTACCTCATT+TGG | 0.347328 | 3:-97639848 | MsG0380017540.01.T01:three_prime_UTR |
| GCCTCACTTGCATTCGGGAT+GGG | 0.362710 | 3:-97641015 | MsG0380017540.01.T01:CDS |
| CATGCTGCCTCACTTGCATT+CGG | 0.374586 | 3:-97641021 | MsG0380017540.01.T01:CDS |
| TTCGGGATGGGCTGTTGATC+AGG | 0.384531 | 3:-97641003 | MsG0380017540.01.T01:CDS |
| GTCATCCGTTTGGTCACGAT+TGG | 0.401871 | 3:-97640951 | MsG0380017540.01.T01:CDS |
| TACTTGGTGGAGTAATCTTT+GGG | 0.403435 | 3:+97639940 | None:intergenic |
| TTGGGCTATGAAGGACAAAC+AGG | 0.451623 | 3:-97640028 | MsG0380017540.01.T01:CDS |
| CAAGATCAATTGGGCTATGA+AGG | 0.451707 | 3:-97640037 | MsG0380017540.01.T01:CDS |
| TACATTCTAGTAACGGTACT+TGG | 0.457670 | 3:+97639924 | None:intergenic |
| TGCCTCACTTGCATTCGGGA+TGG | 0.468994 | 3:-97641016 | MsG0380017540.01.T01:CDS |
| TGTTGTTGTTTCCAGTTCCA+AGG | 0.469561 | 3:+97640058 | None:intergenic |
| TCATCCGTTTGGTCACGATT+GGG | 0.473676 | 3:-97640950 | MsG0380017540.01.T01:CDS |
| ACAGTTACACACTTGATAAA+GGG | 0.481529 | 3:+97639821 | None:intergenic |
| TCTACAGAGGTGCAAGGGAG+GGG | 0.484596 | 3:-97639981 | MsG0380017540.01.T01:CDS |
| GTGTATGCCCAACATGTACT+TGG | 0.485312 | 3:-97639736 | MsG0380017540.01.T01:three_prime_UTR |
| ATCATGATAGACCTTGGAAC+TGG | 0.486256 | 3:-97640069 | MsG0380017540.01.T01:CDS |
| ATGCTGCCTCACTTGCATTC+GGG | 0.490375 | 3:-97641020 | MsG0380017540.01.T01:CDS |
| CACATAATCCAAGTACATGT+TGG | 0.495823 | 3:+97639728 | None:intergenic |
| ACTAGAATGTATCAATCTAC+AGG | 0.497165 | 3:-97639912 | MsG0380017540.01.T01:exon |
| ACATAATCCAAGTACATGTT+GGG | 0.503365 | 3:+97639729 | None:intergenic |
| AGAGGTGCAAGGGAGGGGCG+TGG | 0.504679 | 3:-97639976 | MsG0380017540.01.T01:CDS |
| ACGTCTCGTTGTCATCCGTT+TGG | 0.505472 | 3:-97640961 | MsG0380017540.01.T01:CDS |
| AAACAACAACAAGATCAATT+GGG | 0.514098 | 3:-97640046 | MsG0380017540.01.T01:CDS |
| TCATACATAGTGTTAAAGTC+AGG | 0.525607 | 3:+97640138 | None:intergenic |
| AAGAAGAACATAACTGTGGA+AGG | 0.528366 | 3:+97640105 | None:intergenic |
| TCATCCCAATCGTGACCAAA+CGG | 0.546375 | 3:+97640946 | None:intergenic |
| GATAAAGGGTGTACCAAATG+AGG | 0.558599 | 3:+97639835 | None:intergenic |
| GTCTACAGAGGTGCAAGGGA+GGG | 0.559541 | 3:-97639982 | MsG0380017540.01.T01:CDS |
| AAGCACATCATGATAGACCT+TGG | 0.567283 | 3:-97640075 | MsG0380017540.01.T01:CDS |
| GACTGTCTACAGAGGTGCAA+GGG | 0.580642 | 3:-97639986 | MsG0380017540.01.T01:CDS |
| ATTCTAGTAACGGTACTTGG+TGG | 0.586412 | 3:+97639927 | None:intergenic |
| TCAGGCAATCCTCGCTGAGG+AGG | 0.599877 | 3:-97640985 | MsG0380017540.01.T01:CDS |
| GTTTAAGATGACATACAAGT+AGG | 0.612858 | 3:+97639776 | None:intergenic |
| GCCCATCCCGAATGCAAGTG+AGG | 0.615016 | 3:+97641014 | None:intergenic |
| TGTCTACAGAGGTGCAAGGG+AGG | 0.615983 | 3:-97639983 | MsG0380017540.01.T01:CDS |
| GATGGATGAGGTGCTGTCAT+CGG | 0.623483 | 3:-97640217 | MsG0380017540.01.T01:CDS |
| GGTGTGTGTCAAGATGGATG+AGG | 0.631234 | 3:-97640229 | MsG0380017540.01.T01:intron |
| AGAAGAACATAACTGTGGAA+GGG | 0.633856 | 3:+97640106 | None:intergenic |
| GCACCTCTGTGATGTCCACA+AGG | 0.642857 | 3:+97640160 | None:intergenic |
| AGACTGTCTACAGAGGTGCA+AGG | 0.646760 | 3:-97639987 | MsG0380017540.01.T01:CDS |
| GAATGTATCAATCTACAGGA+AGG | 0.651779 | 3:-97639908 | MsG0380017540.01.T01:three_prime_UTR |
| CTTTGCTGTGATATACCTTG+TGG | 0.662344 | 3:-97640175 | MsG0380017540.01.T01:CDS |
| AGATTGATACATTCTAGTAA+CGG | 0.666479 | 3:+97639917 | None:intergenic |
| CCTAAAGAAGAACATAACTG+TGG | 0.685302 | 3:+97640101 | None:intergenic |
| TGATCAGGCAATCCTCGCTG+AGG | 0.692917 | 3:-97640988 | MsG0380017540.01.T01:CDS |
| ATCATTGAGACTGTCTACAG+AGG | 0.717834 | 3:-97639994 | MsG0380017540.01.T01:CDS |
| CGAGACGTTCCTCCTCAGCG+AGG | 0.755149 | 3:+97640976 | None:intergenic |
| ATACCTTGTGGACATCACAG+AGG | 0.789529 | 3:-97640163 | MsG0380017540.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGCTTTTTTTTTTTTTTTTT+TGG | - | Chr3:97640461-97640480 | MsG0380017540.01.T01:intron | 10.0% |
| !! | AAAACAGCCAAATAATATAT+AGG | - | Chr3:97640014-97640033 | MsG0380017540.01.T01:CDS | 20.0% |
| !! | AGAGATAAAGTAATGAATTT+AGG | - | Chr3:97640044-97640063 | MsG0380017540.01.T01:CDS | 20.0% |
| !! | ATCAACCTAAAATTAAGAAT+TGG | + | Chr3:97640387-97640406 | None:intergenic | 20.0% |
| !! | CATAAAACATAAATCTTTGT+TGG | + | Chr3:97641010-97641029 | None:intergenic | 20.0% |
| !! | CTTATGTCCTATATATTATT+TGG | + | Chr3:97640024-97640043 | None:intergenic | 20.0% |
| !! | GAGATAAAGTAATGAATTTA+GGG | - | Chr3:97640045-97640064 | MsG0380017540.01.T01:CDS | 20.0% |
| !! | TAAAATATCAAGAATGCTTA+TGG | - | Chr3:97639865-97639884 | MsG0380017540.01.T01:three_prime_UTR | 20.0% |
| !! | TCAACCTAAAATTAAGAATT+GGG | + | Chr3:97640386-97640405 | None:intergenic | 20.0% |
| !!! | TCTTAATTTTAGGTTGATAA+GGG | - | Chr3:97640389-97640408 | MsG0380017540.01.T01:intron | 20.0% |
| !!! | TTCTTAATTTTAGGTTGATA+AGG | - | Chr3:97640388-97640407 | MsG0380017540.01.T01:intron | 20.0% |
| ! | AAACAACAACAAGATCAATT+GGG | - | Chr3:97640665-97640684 | MsG0380017540.01.T01:intron | 25.0% |
| ! | AGATTGATACATTCTAGTAA+CGG | + | Chr3:97640797-97640816 | None:intergenic | 25.0% |
| ! | ATAAAGTAATGAATTTAGGG+AGG | - | Chr3:97640048-97640067 | MsG0380017540.01.T01:CDS | 25.0% |
| ! | CAACCTAAAATTAAGAATTG+GGG | + | Chr3:97640385-97640404 | None:intergenic | 25.0% |
| ! | CAGCATAAACAATTTGAATT+TGG | + | Chr3:97640093-97640112 | None:intergenic | 25.0% |
| !! | ACAAAACTGCTTAATTTGAA+TGG | - | Chr3:97639898-97639917 | MsG0380017540.01.T01:three_prime_UTR | 25.0% |
| AATATCAAGAATGCTTATGG+AGG | - | Chr3:97639868-97639887 | MsG0380017540.01.T01:three_prime_UTR | 30.0% | |
| ACAGTTACACACTTGATAAA+GGG | + | Chr3:97640893-97640912 | None:intergenic | 30.0% | |
| ACATAATCCAAGTACATGTT+GGG | + | Chr3:97640985-97641004 | None:intergenic | 30.0% | |
| ACCATCACAATAACAATTTC+AGG | - | Chr3:97640285-97640304 | MsG0380017540.01.T01:intron | 30.0% | |
| ACTAGAATGTATCAATCTAC+AGG | - | Chr3:97640799-97640818 | MsG0380017540.01.T01:intron | 30.0% | |
| ATTGAGCGAAACTGATAATT+AGG | - | Chr3:97640416-97640435 | MsG0380017540.01.T01:intron | 30.0% | |
| GAAACAACAACAAGATCAAT+TGG | - | Chr3:97640664-97640683 | MsG0380017540.01.T01:intron | 30.0% | |
| TCATACATAGTGTTAAAGTC+AGG | + | Chr3:97640576-97640595 | None:intergenic | 30.0% | |
| TGATGTATTTACAGAGAAAC+AGG | + | Chr3:97640183-97640202 | None:intergenic | 30.0% | |
| ! | ATGCCCCAATTCTTAATTTT+AGG | - | Chr3:97640379-97640398 | MsG0380017540.01.T01:intron | 30.0% |
| ! | GTTTAAGATGACATACAAGT+AGG | + | Chr3:97640938-97640957 | None:intergenic | 30.0% |
| ! | TCCTGAAATTGTTATTGTGA+TGG | + | Chr3:97640289-97640308 | None:intergenic | 30.0% |
| AAGAAGAACATAACTGTGGA+AGG | + | Chr3:97640609-97640628 | None:intergenic | 35.0% | |
| AAGTAATGAATTTAGGGAGG+TGG | - | Chr3:97640051-97640070 | MsG0380017540.01.T01:CDS | 35.0% | |
| AGAAGAACATAACTGTGGAA+GGG | + | Chr3:97640608-97640627 | None:intergenic | 35.0% | |
| AGGACTATATTGGGAAATAC+TGG | + | Chr3:97640139-97640158 | None:intergenic | 35.0% | |
| CACATAATCCAAGTACATGT+TGG | + | Chr3:97640986-97641005 | None:intergenic | 35.0% | |
| CCACAGTTATGTTCTTCTTT+AGG | - | Chr3:97640610-97640629 | MsG0380017540.01.T01:intron | 35.0% | |
| CCTAAAGAAGAACATAACTG+TGG | + | Chr3:97640613-97640632 | None:intergenic | 35.0% | |
| GAATGTATCAATCTACAGGA+AGG | - | Chr3:97640803-97640822 | MsG0380017540.01.T01:intron | 35.0% | |
| GACAGTTACACACTTGATAA+AGG | + | Chr3:97640894-97640913 | None:intergenic | 35.0% | |
| TACATTCTAGTAACGGTACT+TGG | + | Chr3:97640790-97640809 | None:intergenic | 35.0% | |
| TGTCCAAAATCTACCTCATT+TGG | - | Chr3:97640863-97640882 | MsG0380017540.01.T01:intron | 35.0% | |
| TTCAGAAAAAGTTGAGAAGC+AGG | + | Chr3:97640159-97640178 | None:intergenic | 35.0% | |
| TTGAGAAGCAGGACTATATT+GGG | + | Chr3:97640148-97640167 | None:intergenic | 35.0% | |
| ! | GTACCAAATGAGGTAGATTT+TGG | + | Chr3:97640869-97640888 | None:intergenic | 35.0% |
| ! | TACTTGGTGGAGTAATCTTT+GGG | + | Chr3:97640774-97640793 | None:intergenic | 35.0% |
| !!! | TTTTTTGGTGTGTGTCAAGA+TGG | - | Chr3:97640476-97640495 | MsG0380017540.01.T01:intron | 35.0% |
| AAGCACATCATGATAGACCT+TGG | - | Chr3:97640636-97640655 | MsG0380017540.01.T01:intron | 40.0% | |
| ATCATGATAGACCTTGGAAC+TGG | - | Chr3:97640642-97640661 | MsG0380017540.01.T01:intron | 40.0% | |
| ATCATTGAGACTGTCTACAG+AGG | - | Chr3:97640717-97640736 | MsG0380017540.01.T01:intron | 40.0% | |
| ATTCTAGTAACGGTACTTGG+TGG | + | Chr3:97640787-97640806 | None:intergenic | 40.0% | |
| CAAGATCAATTGGGCTATGA+AGG | - | Chr3:97640674-97640693 | MsG0380017540.01.T01:intron | 40.0% | |
| GTTGAGAAGCAGGACTATAT+TGG | + | Chr3:97640149-97640168 | None:intergenic | 40.0% | |
| ! | CTTTGCTGTGATATACCTTG+TGG | - | Chr3:97640536-97640555 | MsG0380017540.01.T01:intron | 40.0% |
| ! | GATAAAGGGTGTACCAAATG+AGG | + | Chr3:97640879-97640898 | None:intergenic | 40.0% |
| ! | GTACTTGGTGGAGTAATCTT+TGG | + | Chr3:97640775-97640794 | None:intergenic | 40.0% |
| !! | TGTTGTTGTTTCCAGTTCCA+AGG | + | Chr3:97640656-97640675 | None:intergenic | 40.0% |
| ATACCTTGTGGACATCACAG+AGG | - | Chr3:97640548-97640567 | MsG0380017540.01.T01:intron | 45.0% | |
| GTGTATGCCCAACATGTACT+TGG | - | Chr3:97640975-97640994 | MsG0380017540.01.T01:CDS | 45.0% | |
| TCATCCCAATCGTGACCAAA+CGG | + | Chr3:97639768-97639787 | None:intergenic | 45.0% | |
| TCATCCGTTTGGTCACGATT+GGG | - | Chr3:97639761-97639780 | MsG0380017540.01.T01:three_prime_UTR | 45.0% | |
| TTGGGATGAGACTTGTATGC+AGG | - | Chr3:97639779-97639798 | MsG0380017540.01.T01:three_prime_UTR | 45.0% | |
| TTGGGCTATGAAGGACAAAC+AGG | - | Chr3:97640683-97640702 | MsG0380017540.01.T01:intron | 45.0% | |
| ACGTCTCGTTGTCATCCGTT+TGG | - | Chr3:97639750-97639769 | MsG0380017540.01.T01:three_prime_UTR | 50.0% | |
| ATACCACGAACACACTGCGA+TGG | - | Chr3:97640321-97640340 | MsG0380017540.01.T01:intron | 50.0% | |
| ATACCATCGCAGTGTGTTCG+TGG | + | Chr3:97640327-97640346 | None:intergenic | 50.0% | |
| ATGCTGCCTCACTTGCATTC+GGG | - | Chr3:97639691-97639710 | MsG0380017540.01.T01:three_prime_UTR | 50.0% | |
| GGTGTGTGTCAAGATGGATG+AGG | - | Chr3:97640482-97640501 | MsG0380017540.01.T01:intron | 50.0% | |
| GTCATCCGTTTGGTCACGAT+TGG | - | Chr3:97639760-97639779 | MsG0380017540.01.T01:three_prime_UTR | 50.0% | |
| ! | AGACTGTCTACAGAGGTGCA+AGG | - | Chr3:97640724-97640743 | MsG0380017540.01.T01:intron | 50.0% |
| ! | GACTGTCTACAGAGGTGCAA+GGG | - | Chr3:97640725-97640744 | MsG0380017540.01.T01:intron | 50.0% |
| !! | GATGGATGAGGTGCTGTCAT+CGG | - | Chr3:97640494-97640513 | MsG0380017540.01.T01:intron | 50.0% |
| GCACCTCTGTGATGTCCACA+AGG | + | Chr3:97640554-97640573 | None:intergenic | 55.0% | |
| GCCTCACTTGCATTCGGGAT+GGG | - | Chr3:97639696-97639715 | MsG0380017540.01.T01:three_prime_UTR | 55.0% | |
| TGATCAGGCAATCCTCGCTG+AGG | - | Chr3:97639723-97639742 | MsG0380017540.01.T01:three_prime_UTR | 55.0% | |
| TGCCTCACTTGCATTCGGGA+TGG | - | Chr3:97639695-97639714 | MsG0380017540.01.T01:three_prime_UTR | 55.0% | |
| ! | GTCTACAGAGGTGCAAGGGA+GGG | - | Chr3:97640729-97640748 | MsG0380017540.01.T01:intron | 55.0% |
| ! | TCTACAGAGGTGCAAGGGAG+GGG | - | Chr3:97640730-97640749 | MsG0380017540.01.T01:intron | 55.0% |
| ! | TGTCTACAGAGGTGCAAGGG+AGG | - | Chr3:97640728-97640747 | MsG0380017540.01.T01:intron | 55.0% |
| !! | TTCGGGATGGGCTGTTGATC+AGG | - | Chr3:97639708-97639727 | MsG0380017540.01.T01:three_prime_UTR | 55.0% |
| GCCCATCCCGAATGCAAGTG+AGG | + | Chr3:97639700-97639719 | None:intergenic | 60.0% | |
| TCAGGCAATCCTCGCTGAGG+AGG | - | Chr3:97639726-97639745 | MsG0380017540.01.T01:three_prime_UTR | 60.0% | |
| CGAGACGTTCCTCCTCAGCG+AGG | + | Chr3:97639738-97639757 | None:intergenic | 65.0% | |
| ! | AGAGGTGCAAGGGAGGGGCG+TGG | - | Chr3:97640735-97640754 | MsG0380017540.01.T01:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 97639691 | 97641042 | 97639691 | ID=MsG0380017540.01;Name=MsG0380017540.01 |
| Chr3 | mRNA | 97639691 | 97641042 | 97639691 | ID=MsG0380017540.01.T01;Parent=MsG0380017540.01;Name=MsG0380017540.01.T01;_AED=0.31;_eAED=0.35;_QI=0|0|0.5|1|1|1|2|239|136 |
| Chr3 | exon | 97639691 | 97640238 | 97639691 | ID=MsG0380017540.01.T01:exon:5288;Parent=MsG0380017540.01.T01 |
| Chr3 | exon | 97640941 | 97641042 | 97640941 | ID=MsG0380017540.01.T01:exon:5287;Parent=MsG0380017540.01.T01 |
| Chr3 | CDS | 97640941 | 97641042 | 97640941 | ID=MsG0380017540.01.T01:cds;Parent=MsG0380017540.01.T01 |
| Chr3 | CDS | 97639930 | 97640238 | 97639930 | ID=MsG0380017540.01.T01:cds;Parent=MsG0380017540.01.T01 |
| Chr3 | three_prime_UTR | 97639691 | 97639929 | 97639691 | ID=MsG0380017540.01.T01:three_prime_utr;Parent=MsG0380017540.01.T01 |
| Gene Sequence |
| Protein sequence |
