AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016067.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016067.01.T01 MTR_3g082760 87.912 182 5 2 85 264 34 200 1.18e-110 317
MsG0380016067.01.T01 MTR_5g024920 46.667 120 57 3 2 120 14 127 1.36e-21 94.4
MsG0380016067.01.T01 MTR_5g037350 59.722 72 28 1 5 75 485 556 2.76e-21 93.2
MsG0380016067.01.T01 MTR_1g090220 69.492 59 17 1 8 65 119 177 2.85e-18 80.5
MsG0380016067.01.T01 MTR_1g021865 60.870 69 20 2 9 76 133 195 3.77e-17 78.2
MsG0380016067.01.T01 MTR_2g013980 64.865 74 25 1 3 75 1111 1184 1.89e-16 79.3
MsG0380016067.01.T01 MTR_3g467660 57.576 66 27 1 1 65 1 66 1.92e-14 72.4
MsG0380016067.01.T01 MTR_8g054450 33.871 124 65 2 85 206 112 220 2.88e-13 67.8
MsG0380016067.01.T01 MTR_6g086840 56.897 58 21 2 33 86 14 71 6.86e-12 62.0
MsG0380016067.01.T01 MTR_7g025530 46.875 96 50 1 3 98 251 345 1.15e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016067.01.T01 AT3G01790 67.665 167 37 2 85 249 40 191 1.99e-77 233
MsG0380016067.01.T01 AT3G01790 67.665 167 37 2 85 249 40 191 1.99e-77 233
MsG0380016067.01.T01 AT3G01790 65.094 106 22 1 85 190 40 130 8.37e-44 146
MsG0380016067.01.T01 AT1G78630 34.091 132 69 5 85 213 113 229 2.55e-12 65.5

Find 79 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAAAATATTAGAGAGATT+TGG 0.250476 3:+78627823 MsG0380016067.01.T01:CDS
TGAAAATATTAGAGAGATTT+GGG 0.252594 3:+78627824 MsG0380016067.01.T01:CDS
CCTTCAGAGTTCTTTGCTTA+AGG 0.300702 3:-78628992 None:intergenic
CAGGGAAGATCCTTAATTTC+CGG 0.312788 3:-78631255 None:intergenic
ATCTTGATGGGCTCCGGTGG+CGG 0.315099 3:+78627392 MsG0380016067.01.T01:five_prime_UTR
ATTAAACGCATTAATCTTGA+TGG 0.336783 3:+78627379 MsG0380016067.01.T01:five_prime_UTR
TCAAATAGCTACTGTAGTTA+TGG 0.345393 3:+78628611 MsG0380016067.01.T01:CDS
AATAACATCTGTAGGGTCTT+TGG 0.350210 3:-78629024 None:intergenic
AGGACAGGGACCGGAAATTA+AGG 0.354593 3:+78631245 MsG0380016067.01.T01:intron
TCTTGATGGGCTCCGGTGGC+GGG 0.385945 3:+78627393 MsG0380016067.01.T01:five_prime_UTR
AATGATTCGAGCACAGAAAA+AGG 0.392832 3:+78631369 MsG0380016067.01.T01:CDS
CAAATAGCTACTGTAGTTAT+GGG 0.396768 3:+78628612 MsG0380016067.01.T01:CDS
GTCATGTGGATGTGGTAGTA+AGG 0.404742 3:+78627911 MsG0380016067.01.T01:CDS
CAATGAGATGGAGAAAGATA+TGG 0.426330 3:+78628023 MsG0380016067.01.T01:CDS
CCTGGTAGTGAGCACCCCTT+TGG 0.427762 3:+78631274 MsG0380016067.01.T01:CDS
ATATCTCCATCGTCACGATT+AGG 0.431994 3:-78628657 None:intergenic
AAGGTCTACTACTGGCATAC+AGG 0.442819 3:+78628735 MsG0380016067.01.T01:CDS
AATCCTTACCTTGAGGTTGA+AGG 0.443780 3:-78627194 None:intergenic
AGGAGAGTAGATCAGATGGA+AGG 0.449525 3:+78627931 MsG0380016067.01.T01:CDS
ATGATCCTCATGCAGATTCT+CGG 0.453718 3:+78628576 MsG0380016067.01.T01:CDS
CCAAAGGGGTGCTCACTACC+AGG 0.457830 3:-78631274 None:intergenic
AGAAGAAGAAGAAAGGATCT+TGG 0.462326 3:+78626966 MsG0380016067.01.T01:five_prime_UTR
AGTAAGGAGAGTAGATCAGA+TGG 0.468839 3:+78627927 MsG0380016067.01.T01:CDS
CATACTATAAATTAAATTTG+AGG 0.475654 3:-78627001 None:intergenic
ACATTCAGTCACCTGGCCCT+TGG 0.487414 3:-78627425 None:intergenic
GCCAAGGATATTGCTGTGAC+TGG 0.487743 3:+78628696 MsG0380016067.01.T01:CDS
CTCATCTCTCGTACTGTCCT+AGG 0.490690 3:-78631328 None:intergenic
TCAGAGTTCTTTGCTTAAGG+TGG 0.492268 3:-78628989 None:intergenic
GTCCTAGGAGGCATCACATA+AGG 0.492669 3:-78631313 None:intergenic
AACCTTATGTGATGCCTCCT+AGG 0.498050 3:+78631311 MsG0380016067.01.T01:CDS
TGATAGAAACTAGACTTAAG+TGG 0.498343 3:+78627869 MsG0380016067.01.T01:CDS
GGAGAGTAGATCAGATGGAA+GGG 0.504200 3:+78627932 MsG0380016067.01.T01:CDS
GCTTTGCGAATAACATCTGT+AGG 0.508354 3:-78629032 None:intergenic
CATGGTCACATTCAGTCACC+TGG 0.512957 3:-78627432 None:intergenic
TGATCCTCATGCAGATTCTC+GGG 0.514435 3:+78628577 MsG0380016067.01.T01:CDS
GCATTAATCTTGATGGGCTC+CGG 0.515892 3:+78627386 MsG0380016067.01.T01:five_prime_UTR
GTGAGCACCCCTTTGGTGAT+CGG 0.517843 3:+78631281 MsG0380016067.01.T01:CDS
CCCAGTCACAGCAATATCCT+TGG 0.518223 3:-78628697 None:intergenic
TTCTAGTGGCCGATCACCAA+AGG 0.519844 3:-78631290 None:intergenic
AGTAGTGGCATGTAGGTATG+TGG 0.527622 3:+78628965 MsG0380016067.01.T01:intron
ACTTAAGTGGTTTAAGAATG+TGG 0.534213 3:+78627882 MsG0380016067.01.T01:CDS
AGGCAAATCACTAGAGGTAG+GGG 0.546840 3:+78627955 MsG0380016067.01.T01:CDS
TCTAGTGGCCGATCACCAAA+GGG 0.547147 3:-78631289 None:intergenic
AGCTACTGTAGTTATGGGAA+AGG 0.547157 3:+78628617 MsG0380016067.01.T01:CDS
TTAAACGCATTAATCTTGAT+GGG 0.548352 3:+78627380 MsG0380016067.01.T01:five_prime_UTR
GAGGCAAATCACTAGAGGTA+GGG 0.551366 3:+78627954 MsG0380016067.01.T01:CDS
ATCATTGCACGCCTTGCTCG+TGG 0.552038 3:-78631352 None:intergenic
GGATAGAAGTCATGTGGATG+TGG 0.553501 3:+78627903 MsG0380016067.01.T01:CDS
TGGCATCGAAAACCCGCCAC+CGG 0.554361 3:-78627405 None:intergenic
GGAGGCAAATCACTAGAGGT+AGG 0.571192 3:+78627953 MsG0380016067.01.T01:CDS
GACATAAAGTAGTGGCATGT+AGG 0.571894 3:+78628958 MsG0380016067.01.T01:intron
TCACGATTAGGAGTATAAGT+TGG 0.572405 3:-78628645 None:intergenic
AGATCTAGAGATCAATGAGA+TGG 0.573469 3:+78628011 MsG0380016067.01.T01:CDS
TGACAGACAAGGTCTACTAC+TGG 0.574265 3:+78628727 MsG0380016067.01.T01:CDS
AGGTCTACTACTGGCATACA+GGG 0.576841 3:+78628736 MsG0380016067.01.T01:CDS
GGTAAACTCCTTCAACCTCA+AGG 0.594941 3:+78627186 MsG0380016067.01.T01:five_prime_UTR
CCTTAAGCAAAGAACTCTGA+AGG 0.596688 3:+78628992 MsG0380016067.01.T01:CDS
CGGAAATTAAGGATCTTCCC+TGG 0.598071 3:+78631256 MsG0380016067.01.T01:CDS
GAGTAGATCAGATGGAAGGG+AGG 0.601389 3:+78627935 MsG0380016067.01.T01:CDS
AAGAACTCTGAAGGATCAGA+TGG 0.606577 3:+78629001 MsG0380016067.01.T01:CDS
TTAATCTTGATGGGCTCCGG+TGG 0.608778 3:+78627389 MsG0380016067.01.T01:five_prime_UTR
GTAGTGGCATGTAGGTATGT+GGG 0.612253 3:+78628966 MsG0380016067.01.T01:intron
GGCATCACATAAGGTTCTAG+TGG 0.614175 3:-78631304 None:intergenic
CTTTGCGAATAACATCTGTA+GGG 0.616003 3:-78629031 None:intergenic
TATACTCCTAATCGTGACGA+TGG 0.626802 3:+78628651 MsG0380016067.01.T01:CDS
CCAAGGATATTGCTGTGACT+GGG 0.629076 3:+78628697 MsG0380016067.01.T01:CDS
GAGAGATGAGACCACGAGCA+AGG 0.633625 3:+78631341 MsG0380016067.01.T01:CDS
AAATTAAATTTGAGGTACAA+CGG 0.637186 3:-78626993 None:intergenic
GTGCATTGTGCTTAATGCCA+AGG 0.638542 3:+78628680 MsG0380016067.01.T01:CDS
AGGATATTGCTGTGACTGGG+AGG 0.647448 3:+78628700 MsG0380016067.01.T01:CDS
TGGGAGGAAGCTGACAGACA+AGG 0.650353 3:+78628716 MsG0380016067.01.T01:CDS
GAATGTGGATAGAAGTCATG+TGG 0.656491 3:+78627897 MsG0380016067.01.T01:CDS
ACCTCCCGAGAATCTGCATG+AGG 0.660891 3:-78628581 None:intergenic
GAAGGGAGGCAAATCACTAG+AGG 0.665611 3:+78627949 MsG0380016067.01.T01:CDS
ATCTCTCGTACTGTCCTAGG+AGG 0.665987 3:-78631325 None:intergenic
CAAAGGGGTGCTCACTACCA+GGG 0.686267 3:-78631273 None:intergenic
TCCTCATGCAGATTCTCGGG+AGG 0.688885 3:+78628580 MsG0380016067.01.T01:CDS
TGAGCAGCGACAGAATGCTG+AGG 0.718134 3:+78631414 MsG0380016067.01.T01:CDS
CTAGTGGCCGATCACCAAAG+GGG 0.770452 3:-78631288 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTAAAATTTAATATT+TGG + Chr3:78631026-78631045 MsG0380016067.01.T01:intron 0.0%
!! ATAACTAATTAAAAAGAATA+AGG - Chr3:78631166-78631185 None:intergenic 10.0%
!! ATATTTGCATATTAAAAAAA+TGG - Chr3:78630607-78630626 None:intergenic 10.0%
!! TAAAATTATAAATACTACTT+TGG - Chr3:78628803-78628822 None:intergenic 10.0%
!!! AAAAGTTTTTTAAGAAATTA+AGG - Chr3:78629863-78629882 None:intergenic 10.0%
!!! AAAATACAAATTTTTAAATC+AGG + Chr3:78629479-78629498 MsG0380016067.01.T01:intron 10.0%
!!! AAAGTAGTATTTATAATTTT+AGG + Chr3:78628802-78628821 MsG0380016067.01.T01:intron 10.0%
!!! CTTTAAGTTTATTTTATTTT+AGG + Chr3:78628137-78628156 MsG0380016067.01.T01:intron 10.0%
!! AAGAATAAAAGAAAATAATG+AGG + Chr3:78629578-78629597 MsG0380016067.01.T01:intron 15.0%
!! ACATTAAAATCATAATTTCA+TGG - Chr3:78627453-78627472 None:intergenic 15.0%
!! ATGAAAAAAAATAATCATTC+TGG - Chr3:78629162-78629181 None:intergenic 15.0%
!! CAAAATAATATAAAAAACAC+AGG + Chr3:78630953-78630972 MsG0380016067.01.T01:intron 15.0%
!! CATACTATAAATTAAATTTG+AGG - Chr3:78627004-78627023 None:intergenic 15.0%
!! TATATAAAATAAAATTCACC+AGG + Chr3:78630329-78630348 MsG0380016067.01.T01:intron 15.0%
!! TATATCATAAATAATGACAA+GGG - Chr3:78627229-78627248 None:intergenic 15.0%
!!! AAAGTATTGAATTAAATTAC+TGG + Chr3:78629133-78629152 MsG0380016067.01.T01:intron 15.0%
!!! AAATTTTTCACAATTGTAAA+CGG + Chr3:78629632-78629651 MsG0380016067.01.T01:intron 15.0%
!!! ACATTTTGAAACAATTTATT+GGG + Chr3:78628397-78628416 MsG0380016067.01.T01:intron 15.0%
!!! TATAATTGTTGTTTTGTATA+TGG + Chr3:78628894-78628913 MsG0380016067.01.T01:intron 15.0%
!!! TATTCTTTTGAATTGTAATT+TGG - Chr3:78629565-78629584 None:intergenic 15.0%
!!! TGATTATTTTTTTTCATTGT+TGG + Chr3:78629165-78629184 MsG0380016067.01.T01:intron 15.0%
!! ATATCATAAATAATGACAAG+GGG - Chr3:78627228-78627247 None:intergenic 20.0%
!! ATGAAAATATTAGAGAGATT+TGG + Chr3:78627823-78627842 MsG0380016067.01.T01:CDS 20.0%
!! CAAAACAACAATTATAAAAC+TGG - Chr3:78628890-78628909 None:intergenic 20.0%
!! CTATATCATAAATAATGACA+AGG - Chr3:78627230-78627249 None:intergenic 20.0%
!! TGAAAATATTAGAGAGATTT+GGG + Chr3:78627824-78627843 MsG0380016067.01.T01:CDS 20.0%
!!! AAATTAAATTTGAGGTACAA+CGG - Chr3:78626996-78627015 None:intergenic 20.0%
!!! GACATTTTGAAACAATTTAT+TGG + Chr3:78628396-78628415 MsG0380016067.01.T01:intron 20.0%
!!! TATTTTTTTGAATAGGAAGA+AGG + Chr3:78627131-78627150 MsG0380016067.01.T01:intron 20.0%
!!! TTGCCCAATTTTTTAAAATT+CGG + Chr3:78630030-78630049 MsG0380016067.01.T01:intron 20.0%
!!! TTGTTTCTTCTTTTTATCAT+AGG + Chr3:78630222-78630241 MsG0380016067.01.T01:intron 20.0%
!!! TTTTTCTATGGATTCTAAAA+TGG + Chr3:78629726-78629745 MsG0380016067.01.T01:intron 20.0%
!!! TTTTTTTTCTTTGAAGTATG+TGG + Chr3:78627479-78627498 MsG0380016067.01.T01:intron 20.0%
! AAACCCTAATTTCTTAGAAA+GGG + Chr3:78630801-78630820 MsG0380016067.01.T01:intron 25.0%
! AACAACAATTATAAAACTGG+AGG - Chr3:78628887-78628906 None:intergenic 25.0%
! AAGTAATTAGTTACTTCTCT+TGG + Chr3:78628343-78628362 MsG0380016067.01.T01:intron 25.0%
! AGAATAAAATGCGAGATAAT+AGG + Chr3:78627568-78627587 MsG0380016067.01.T01:intron 25.0%
! ATACTACTCAAGTAAAACAT+TGG - Chr3:78630250-78630269 None:intergenic 25.0%
! ATCCATTCTAAACTGTAAAT+TGG + Chr3:78629785-78629804 MsG0380016067.01.T01:intron 25.0%
! ATGCAATATTGAAGAATTGA+TGG + Chr3:78631184-78631203 MsG0380016067.01.T01:intron 25.0%
! ATTAAACGCATTAATCTTGA+TGG + Chr3:78627379-78627398 MsG0380016067.01.T01:five_prime_UTR 25.0%
! GAGATAATAGGTTTATGAAA+TGG + Chr3:78627580-78627599 MsG0380016067.01.T01:intron 25.0%
! GTATTGAATTAAATTACTGG+TGG + Chr3:78629136-78629155 MsG0380016067.01.T01:intron 25.0%
! TAGACTTGTAGAATATCTTA+TGG + Chr3:78627521-78627540 MsG0380016067.01.T01:intron 25.0%
! TAGGAATGTTAATTATGCTA+TGG - Chr3:78629952-78629971 None:intergenic 25.0%
! TATAGTATTCACATCTGTAT+TGG - Chr3:78627732-78627751 None:intergenic 25.0%
! TCAAAAATCAAGATACGATA+CGG + Chr3:78630527-78630546 MsG0380016067.01.T01:intron 25.0%
! TCCATTCTAAACTGTAAATT+GGG + Chr3:78629786-78629805 MsG0380016067.01.T01:intron 25.0%
! TGAAAAGTTATCCTCATAAT+AGG + Chr3:78628217-78628236 MsG0380016067.01.T01:intron 25.0%
! TTAAACGCATTAATCTTGAT+GGG + Chr3:78627380-78627399 MsG0380016067.01.T01:five_prime_UTR 25.0%
! TTGAGCCATGAATTATTTAT+TGG + Chr3:78628370-78628389 MsG0380016067.01.T01:intron 25.0%
! TTTAATATTTGGATACTCTC+TGG + Chr3:78631037-78631056 MsG0380016067.01.T01:intron 25.0%
! TTTGTTACATTATTCAAGCA+AGG - Chr3:78629911-78629930 None:intergenic 25.0%
!! AATTCTTCAAGTTCATCATT+AGG - Chr3:78629971-78629990 None:intergenic 25.0%
!! ACTTTATAGACCAATGTTTT+TGG + Chr3:78629097-78629116 MsG0380016067.01.T01:intron 25.0%
!! CTTGAAGAATTACATTTTAG+AGG + Chr3:78629980-78629999 MsG0380016067.01.T01:intron 25.0%
!! GTTTTACATTTGTCCTTTTT+AGG + Chr3:78628194-78628213 MsG0380016067.01.T01:intron 25.0%
!! TGTTCGGAATTTTCTATTTT+TGG - Chr3:78629225-78629244 None:intergenic 25.0%
!! TTTCCCTTTCTAAGAAATTA+GGG - Chr3:78630807-78630826 None:intergenic 25.0%
!!! AAAAGCATTTCCAAAAACAT+TGG - Chr3:78629110-78629129 None:intergenic 25.0%
!!! ATAGTTTCTCTAGTTTTTCT+AGG - Chr3:78627985-78628004 None:intergenic 25.0%
!!! GGATACAACACATTTTAATT+AGG - Chr3:78628171-78628190 None:intergenic 25.0%
!!! GTTAAAAATGGAGTCTTTTT+TGG + Chr3:78627304-78627323 MsG0380016067.01.T01:intron 25.0%
!!! TATCTTATGGTTTTACGTTT+TGG + Chr3:78627534-78627553 MsG0380016067.01.T01:intron 25.0%
!!! TGCCCAATTTTTTAAAATTC+GGG + Chr3:78630031-78630050 MsG0380016067.01.T01:intron 25.0%
!!! TTAGGGTCTTTTGATTATTT+TGG - Chr3:78629459-78629478 None:intergenic 25.0%
!!! TTCTATTTTTGGTCTCAAAT+AGG - Chr3:78629214-78629233 None:intergenic 25.0%
AAAGAGAAGAAGAAGAAGAA+AGG + Chr3:78626959-78626978 MsG0380016067.01.T01:five_prime_UTR 30.0%
AAAGGACAAATGTAAAACAG+TGG - Chr3:78628192-78628211 None:intergenic 30.0%
AATTAGTTACTTCTCTTGGA+AGG + Chr3:78628347-78628366 MsG0380016067.01.T01:intron 30.0%
AATTGGCTATTCCTATTATG+AGG - Chr3:78628231-78628250 None:intergenic 30.0%
ACTATTCTGACATAAAGTAG+TGG + Chr3:78628950-78628969 MsG0380016067.01.T01:intron 30.0%
ACTTAAGTGGTTTAAGAATG+TGG + Chr3:78627882-78627901 MsG0380016067.01.T01:CDS 30.0%
AGCCATGAATTATTTATTGG+CGG + Chr3:78628373-78628392 MsG0380016067.01.T01:intron 30.0%
AGTAGCATTATAACAACTTG+TGG + Chr3:78629404-78629423 MsG0380016067.01.T01:intron 30.0%
ATGCCTATGTCTATATTGAA+TGG + Chr3:78627780-78627799 MsG0380016067.01.T01:intron 30.0%
ATTAACAAACACAAGAAACC+AGG + Chr3:78630627-78630646 MsG0380016067.01.T01:intron 30.0%
ATTATTCAAGCAAGGTTTAC+CGG - Chr3:78629903-78629922 None:intergenic 30.0%
CAAATAGCTACTGTAGTTAT+GGG + Chr3:78628612-78628631 MsG0380016067.01.T01:CDS 30.0%
GAAAACAATTCTTGAGCAAT+AGG - Chr3:78630392-78630411 None:intergenic 30.0%
GAAACAACAAATCATGAAGT+TGG - Chr3:78630209-78630228 None:intergenic 30.0%
GAAACCCTAATTTCTTAGAA+AGG + Chr3:78630800-78630819 MsG0380016067.01.T01:intron 30.0%
GAAATAGAGTGTAGAAACAT+AGG - Chr3:78627075-78627094 None:intergenic 30.0%
GCATTATTGCTAATGTATGT+AGG + Chr3:78631225-78631244 MsG0380016067.01.T01:intron 30.0%
GGTAAAATTTCTCAGAAGAT+AGG - Chr3:78628866-78628885 None:intergenic 30.0%
GTACTAGTTAAAGAACAGTA+AGG + Chr3:78627650-78627669 MsG0380016067.01.T01:intron 30.0%
GTCTAGATTATGAGTGAAAT+TGG - Chr3:78628248-78628267 None:intergenic 30.0%
TACCATAAGAATCAAGTCTA+AGG + Chr3:78629298-78629317 MsG0380016067.01.T01:intron 30.0%
TCAAATAGCTACTGTAGTTA+TGG + Chr3:78628611-78628630 MsG0380016067.01.T01:CDS 30.0%
TCTTATAGTCTAACCCATAA+AGG + Chr3:78629523-78629542 MsG0380016067.01.T01:intron 30.0%
TGAATAATGCCAAAAGATTG+AGG - Chr3:78628929-78628948 None:intergenic 30.0%
TGATAGAAACTAGACTTAAG+TGG + Chr3:78627869-78627888 MsG0380016067.01.T01:CDS 30.0%
TGGAGAACAAAATTGAACTT+GGG + Chr3:78629345-78629364 MsG0380016067.01.T01:intron 30.0%
TTAGACTTGATTCTTATGGT+AGG - Chr3:78629299-78629318 None:intergenic 30.0%
TTCATAAAATGTCCAAAGCT+CGG - Chr3:78628469-78628488 None:intergenic 30.0%
TTCCTTAGACTTGATTCTTA+TGG - Chr3:78629303-78629322 None:intergenic 30.0%
TTCGATTGTGAAAGAAAGAA+GGG + Chr3:78630282-78630301 MsG0380016067.01.T01:intron 30.0%
TTGCTCATATTAGATTGATG+TGG - Chr3:78629837-78629856 None:intergenic 30.0%
TTTCGATTGTGAAAGAAAGA+AGG + Chr3:78630281-78630300 MsG0380016067.01.T01:intron 30.0%
TTTGAAAAATCCTTACCTTG+AGG - Chr3:78627204-78627223 None:intergenic 30.0%
! ATCTGAAGCAAAAATGAAGA+TGG + Chr3:78627165-78627184 MsG0380016067.01.T01:five_prime_UTR 30.0%
! CTTTCCCTTTCTAAGAAATT+AGG - Chr3:78630808-78630827 None:intergenic 30.0%
! GGATAACTTTTCACCTAAAA+AGG - Chr3:78628210-78628229 None:intergenic 30.0%
! TTGTTATAATGCTACTTGCA+GGG - Chr3:78629400-78629419 None:intergenic 30.0%
!! GCCCCGAATTTTAAAAAATT+GGG - Chr3:78630036-78630055 None:intergenic 30.0%
!! TACATCACGTAAGTTGTTTT+AGG - Chr3:78629074-78629093 None:intergenic 30.0%
!! TGCCCCGAATTTTAAAAAAT+TGG - Chr3:78630037-78630056 None:intergenic 30.0%
!! TGTTCTGGGTTAGTTAAAAA+TGG + Chr3:78627292-78627311 MsG0380016067.01.T01:intron 30.0%
!! TTCAACTTTTTCTTCCAAAC+TGG - Chr3:78630783-78630802 None:intergenic 30.0%
!!! CACTGTTTTGAAAAACCATT+AGG - Chr3:78629377-78629396 None:intergenic 30.0%
!!! GCCCAATTTTTTAAAATTCG+GGG + Chr3:78630032-78630051 MsG0380016067.01.T01:intron 30.0%
AAAGATGCAATTGTGTTGTG+TGG + Chr3:78630824-78630843 MsG0380016067.01.T01:intron 35.0%
AACAAAATTGAACTTGGGGT+AGG + Chr3:78629350-78629369 MsG0380016067.01.T01:intron 35.0%
AACTATTCATCCTATGTTGC+TGG + Chr3:78629685-78629704 MsG0380016067.01.T01:intron 35.0%
AAGTTCAACAGAGTCATTAG+AGG - Chr3:78629756-78629775 None:intergenic 35.0%
AATAACATCTGTAGGGTCTT+TGG - Chr3:78629027-78629046 None:intergenic 35.0%
AATGATTCGAGCACAGAAAA+AGG + Chr3:78631369-78631388 MsG0380016067.01.T01:CDS 35.0%
ACAGGCTATAACAAGATGAA+AGG - Chr3:78630443-78630462 None:intergenic 35.0%
ACGCCATTCAATATAGACAT+AGG - Chr3:78627786-78627805 None:intergenic 35.0%
AGAAGAAGAAGAAAGGATCT+TGG + Chr3:78626966-78626985 MsG0380016067.01.T01:five_prime_UTR 35.0%
AGATCTAGAGATCAATGAGA+TGG + Chr3:78628011-78628030 MsG0380016067.01.T01:CDS 35.0%
ATTGCTAATGTATGTAGGAC+AGG + Chr3:78631230-78631249 MsG0380016067.01.T01:intron 35.0%
CAATGAGATGGAGAAAGATA+TGG + Chr3:78628023-78628042 MsG0380016067.01.T01:CDS 35.0%
CAGTATGAAATGAGATCGTA+AGG + Chr3:78629243-78629262 MsG0380016067.01.T01:intron 35.0%
CGATCTCATTTCATACTGTT+CGG - Chr3:78629241-78629260 None:intergenic 35.0%
CTTTGCGAATAACATCTGTA+GGG - Chr3:78629034-78629053 None:intergenic 35.0%
GAATTGTAATTTGGCCCAAA+TGG - Chr3:78629556-78629575 None:intergenic 35.0%
GCCATGAATTATTTATTGGC+GGG + Chr3:78628374-78628393 MsG0380016067.01.T01:intron 35.0%
GCCCAATTTACAGTTTAGAA+TGG - Chr3:78629790-78629809 None:intergenic 35.0%
GGAGAACAAAATTGAACTTG+GGG + Chr3:78629346-78629365 MsG0380016067.01.T01:intron 35.0%
GTGGAGAACAAAATTGAACT+TGG + Chr3:78629344-78629363 MsG0380016067.01.T01:intron 35.0%
TAGCAAAAAGAGTGAAGCAT+AGG + Chr3:78631447-78631466 MsG0380016067.01.T01:CDS 35.0%
TCATAAAATGTCCAAAGCTC+GGG - Chr3:78628468-78628487 None:intergenic 35.0%
TCATGTAGGGGAATAAGATT+TGG + Chr3:78628077-78628096 MsG0380016067.01.T01:intron 35.0%
TCCCGCCAATAAATAATTCA+TGG - Chr3:78628378-78628397 None:intergenic 35.0%
TCTCCCTAAAAACTTTCACT+TGG - Chr3:78630006-78630025 None:intergenic 35.0%
TTGATGTGGAATGATGAAAG+TGG - Chr3:78629823-78629842 None:intergenic 35.0%
TTGCTAATGTATGTAGGACA+GGG + Chr3:78631231-78631250 MsG0380016067.01.T01:intron 35.0%
! AGGCCAAGTGAAAGTTTTTA+GGG + Chr3:78630000-78630019 MsG0380016067.01.T01:intron 35.0%
! GATGTTGATGTTGTCTCTTT+TGG + Chr3:78628102-78628121 MsG0380016067.01.T01:intron 35.0%
! GTGAAAATGCAACTTGTTCT+GGG + Chr3:78627278-78627297 MsG0380016067.01.T01:intron 35.0%
! GTTGCATTTTCACAAACACT+TGG - Chr3:78627271-78627290 None:intergenic 35.0%
! GTTGTTATAATGCTACTTGC+AGG - Chr3:78629401-78629420 None:intergenic 35.0%
! GTTTTTGTGTTTTCAGAGAG+CGG + Chr3:78627348-78627367 MsG0380016067.01.T01:five_prime_UTR 35.0%
! TCACGATTAGGAGTATAAGT+TGG - Chr3:78628648-78628667 None:intergenic 35.0%
! TGATGTTGTCTCTTTTGGTA+AGG + Chr3:78628107-78628126 MsG0380016067.01.T01:intron 35.0%
! TGTGAAAATGCAACTTGTTC+TGG + Chr3:78627277-78627296 MsG0380016067.01.T01:intron 35.0%
! TTTCTTGTGCCTCAATCTTT+TGG + Chr3:78628917-78628936 MsG0380016067.01.T01:intron 35.0%
!! ATGAACTTTTGTTTAGCGTC+TGG + Chr3:78628484-78628503 MsG0380016067.01.T01:intron 35.0%
!! ATTTTTCCGTATCGACGTAT+CGG - Chr3:78630506-78630525 None:intergenic 35.0%
!! TCTCTTGACTCGTTTTTCTA+TGG + Chr3:78629714-78629733 MsG0380016067.01.T01:intron 35.0%
!!! CGTCATCCATTTTGAAGTAT+CGG + Chr3:78631117-78631136 MsG0380016067.01.T01:intron 35.0%
!!! GTCATCCATTTTGAAGTATC+GGG + Chr3:78631118-78631137 MsG0380016067.01.T01:intron 35.0%
!!! TCATCCATTTTGAAGTATCG+GGG + Chr3:78631119-78631138 MsG0380016067.01.T01:intron 35.0%
AAATGGTCATGGGCCTTTAT+GGG - Chr3:78629539-78629558 None:intergenic 40.0%
AAGCCAATCAGCCAAATGTT+TGG - Chr3:78627616-78627635 None:intergenic 40.0%
AATCAAGATACGATACGGCT+AGG + Chr3:78630532-78630551 MsG0380016067.01.T01:intron 40.0%
AATCCTTACCTTGAGGTTGA+AGG - Chr3:78627197-78627216 None:intergenic 40.0%
AATTTGGCCCAAATGGTCAT+GGG - Chr3:78629549-78629568 None:intergenic 40.0%
ACGTCGTTTGATTCATGTAG+GGG + Chr3:78628065-78628084 MsG0380016067.01.T01:intron 40.0%
AGCCAATCAGCCAAATGTTT+GGG - Chr3:78627615-78627634 None:intergenic 40.0%
AGCTACTGTAGTTATGGGAA+AGG + Chr3:78628617-78628636 MsG0380016067.01.T01:CDS 40.0%
AGTAAGGAGAGTAGATCAGA+TGG + Chr3:78627927-78627946 MsG0380016067.01.T01:CDS 40.0%
AGTCTAAGGAAAGTGACTTG+AGG + Chr3:78629312-78629331 MsG0380016067.01.T01:intron 40.0%
ATAAAGGCCCATGACCATTT+GGG + Chr3:78629539-78629558 MsG0380016067.01.T01:intron 40.0%
ATACTCTCTGGATACGTATC+GGG + Chr3:78631049-78631068 MsG0380016067.01.T01:intron 40.0%
ATATCTCCATCGTCACGATT+AGG - Chr3:78628660-78628679 None:intergenic 40.0%
ATGATCCTCATGCAGATTCT+CGG + Chr3:78628576-78628595 MsG0380016067.01.T01:CDS 40.0%
CAACAAATCATGAAGTTGGC+TGG - Chr3:78630205-78630224 None:intergenic 40.0%
CAGCCAAATGTTTGGGAAAT+GGG - Chr3:78627608-78627627 None:intergenic 40.0%
CAGGGAAGATCCTTAATTTC+CGG - Chr3:78631258-78631277 None:intergenic 40.0%
CCATTCTACGTCATCACAAA+AGG - Chr3:78630069-78630088 None:intergenic 40.0%
CCTTAAGCAAAGAACTCTGA+AGG + Chr3:78628992-78629011 MsG0380016067.01.T01:CDS 40.0%
CCTTCAGAGTTCTTTGCTTA+AGG - Chr3:78628995-78629014 None:intergenic 40.0%
GAATGTGGATAGAAGTCATG+TGG + Chr3:78627897-78627916 MsG0380016067.01.T01:CDS 40.0%
GACATAAAGTAGTGGCATGT+AGG + Chr3:78628958-78628977 MsG0380016067.01.T01:intron 40.0%
GACGTCGTTTGATTCATGTA+GGG + Chr3:78628064-78628083 MsG0380016067.01.T01:intron 40.0%
GAGATTTACTCCAGCAACAT+AGG - Chr3:78629698-78629717 None:intergenic 40.0%
GATACTCTCTGGATACGTAT+CGG + Chr3:78631048-78631067 MsG0380016067.01.T01:intron 40.0%
GCACATGTATGAAAATGACC+TGG - Chr3:78630350-78630369 None:intergenic 40.0%
GCTTTGCGAATAACATCTGT+AGG - Chr3:78629035-78629054 None:intergenic 40.0%
GTCTAAGGAAAGTGACTTGA+GGG + Chr3:78629313-78629332 MsG0380016067.01.T01:intron 40.0%
GTTCCCATTTCCCAAACATT+TGG + Chr3:78627602-78627621 MsG0380016067.01.T01:intron 40.0%
TAATTTGGCCCAAATGGTCA+TGG - Chr3:78629550-78629569 None:intergenic 40.0%
TATACTCCTAATCGTGACGA+TGG + Chr3:78628651-78628670 MsG0380016067.01.T01:CDS 40.0%
TCAGAGTTCTTTGCTTAAGG+TGG - Chr3:78628992-78629011 None:intergenic 40.0%
TCAGCCAAATGTTTGGGAAA+TGG - Chr3:78627609-78627628 None:intergenic 40.0%
TCATACATGTGCAGAGATGA+AGG + Chr3:78630358-78630377 MsG0380016067.01.T01:intron 40.0%
TCCTGTAGCTGGACATTAAT+TGG - Chr3:78630109-78630128 None:intergenic 40.0%
TGACGTCGTTTGATTCATGT+AGG + Chr3:78628063-78628082 MsG0380016067.01.T01:intron 40.0%
TGTCTCGTAAACGAAATAGC+TGG - Chr3:78629662-78629681 None:intergenic 40.0%
TTAATGTCCAGCTACAGGAA+TGG + Chr3:78630110-78630129 MsG0380016067.01.T01:intron 40.0%
TTCACCACCAAAACTTTCAC+CGG + Chr3:78629881-78629900 MsG0380016067.01.T01:intron 40.0%
TTCCCAAACATTTGGCTGAT+TGG + Chr3:78627610-78627629 MsG0380016067.01.T01:intron 40.0%
! AAGAACTCTGAAGGATCAGA+TGG + Chr3:78629001-78629020 MsG0380016067.01.T01:CDS 40.0%
! AGGTTTACCGGTGAAAGTTT+TGG - Chr3:78629891-78629910 None:intergenic 40.0%
! AGTTTAGAATGGATGACAGC+AGG - Chr3:78629779-78629798 None:intergenic 40.0%
! GAGGCCAAGTGAAAGTTTTT+AGG + Chr3:78629999-78630018 MsG0380016067.01.T01:intron 40.0%
! TGTGAAAGAAAGAAGGGCAT+TGG + Chr3:78630288-78630307 MsG0380016067.01.T01:intron 40.0%
!! CCTTTTGTGATGACGTAGAA+TGG + Chr3:78630066-78630085 MsG0380016067.01.T01:intron 40.0%
!! GTGAAAGAAAGAAGGGCATT+GGG + Chr3:78630289-78630308 MsG0380016067.01.T01:intron 40.0%
!! TGAAAGAAAGAAGGGCATTG+GGG + Chr3:78630290-78630309 MsG0380016067.01.T01:intron 40.0%
!! TTTACCGGTGAAAGTTTTGG+TGG - Chr3:78629888-78629907 None:intergenic 40.0%
AACCTTATGTGATGCCTCCT+AGG + Chr3:78631311-78631330 MsG0380016067.01.T01:CDS 45.0%
AAGGTCTACTACTGGCATAC+AGG + Chr3:78628735-78628754 MsG0380016067.01.T01:CDS 45.0%
AATGTATGTAGGACAGGGAC+CGG + Chr3:78631236-78631255 MsG0380016067.01.T01:intron 45.0%
ACACAGGTATCCGTGTGTAT+CGG + Chr3:78630969-78630988 MsG0380016067.01.T01:intron 45.0%
ACATGTTCAGCTCATGTTGG+AGG - Chr3:78630144-78630163 None:intergenic 45.0%
ACCGTATCTGTGTCGGATTT+GGG - Chr3:78627706-78627725 None:intergenic 45.0%
ACGTCATCACAAAAGGCTTG+TGG - Chr3:78630062-78630081 None:intergenic 45.0%
ACTCCTTCAACCTCAAGGTA+AGG + Chr3:78627191-78627210 MsG0380016067.01.T01:intron 45.0%
AGGAGAGTAGATCAGATGGA+AGG + Chr3:78627931-78627950 MsG0380016067.01.T01:CDS 45.0%
AGGCAAATCACTAGAGGTAG+GGG + Chr3:78627955-78627974 MsG0380016067.01.T01:CDS 45.0%
AGGTCTACTACTGGCATACA+GGG + Chr3:78628736-78628755 MsG0380016067.01.T01:CDS 45.0%
AGTAGTGGCATGTAGGTATG+TGG + Chr3:78628965-78628984 MsG0380016067.01.T01:intron 45.0%
ATGTTAATGTGCTACGAGCC+TGG - Chr3:78630648-78630667 None:intergenic 45.0%
CAAATGGTCATGGGCCTTTA+TGG - Chr3:78629540-78629559 None:intergenic 45.0%
CACAGTCGAAGTCTTGGTAT+CGG - Chr3:78630743-78630762 None:intergenic 45.0%
CATAAAGGCCCATGACCATT+TGG + Chr3:78629538-78629557 MsG0380016067.01.T01:intron 45.0%
CCAAGGATATTGCTGTGACT+GGG + Chr3:78628697-78628716 MsG0380016067.01.T01:CDS 45.0%
CGGAAATTAAGGATCTTCCC+TGG + Chr3:78631256-78631275 MsG0380016067.01.T01:CDS 45.0%
CGGGACGTATCGGAAAATAT+CGG + Chr3:78630989-78631008 MsG0380016067.01.T01:intron 45.0%
CGTCATCACAAAAGGCTTGT+GGG - Chr3:78630061-78630080 None:intergenic 45.0%
CTTATGGTAGGAAGCAGTTC+TGG - Chr3:78629287-78629306 None:intergenic 45.0%
GAAGCCCCGATACTTCAAAA+TGG - Chr3:78631126-78631145 None:intergenic 45.0%
GAGGCAAATCACTAGAGGTA+GGG + Chr3:78627954-78627973 MsG0380016067.01.T01:CDS 45.0%
GCCAATTAATGTCCAGCTAC+AGG + Chr3:78630105-78630124 MsG0380016067.01.T01:intron 45.0%
GGAGAGTAGATCAGATGGAA+GGG + Chr3:78627932-78627951 MsG0380016067.01.T01:CDS 45.0%
GGATAGAAGTCATGTGGATG+TGG + Chr3:78627903-78627922 MsG0380016067.01.T01:CDS 45.0%
GGTAAACTCCTTCAACCTCA+AGG + Chr3:78627186-78627205 MsG0380016067.01.T01:five_prime_UTR 45.0%
GTAGCTGGACATTAATTGGC+AGG - Chr3:78630105-78630124 None:intergenic 45.0%
GTAGTGGCATGTAGGTATGT+GGG + Chr3:78628966-78628985 MsG0380016067.01.T01:intron 45.0%
GTCATGTGGATGTGGTAGTA+AGG + Chr3:78627911-78627930 MsG0380016067.01.T01:CDS 45.0%
GTGACATGTTCAGCTCATGT+TGG - Chr3:78630147-78630166 None:intergenic 45.0%
GTGCATTGTGCTTAATGCCA+AGG + Chr3:78628680-78628699 MsG0380016067.01.T01:CDS 45.0%
TCCCAAATCCGACACAGATA+CGG + Chr3:78627702-78627721 MsG0380016067.01.T01:intron 45.0%
TCCGTATCGTATCTCGTATC+CGG - Chr3:78630471-78630490 None:intergenic 45.0%
TGACAGACAAGGTCTACTAC+TGG + Chr3:78628727-78628746 MsG0380016067.01.T01:CDS 45.0%
TGATCCTCATGCAGATTCTC+GGG + Chr3:78628577-78628596 MsG0380016067.01.T01:CDS 45.0%
TGCAATTGTGTTGTGTGGTG+TGG + Chr3:78630829-78630848 MsG0380016067.01.T01:intron 45.0%
TGTAGAAGATTCCCGAGCTT+TGG + Chr3:78628454-78628473 MsG0380016067.01.T01:intron 45.0%
TTGGTAGACCGTATCTGTGT+CGG - Chr3:78627713-78627732 None:intergenic 45.0%
TTGTTATAGCCTGTGAAGCC+CGG + Chr3:78630449-78630468 MsG0380016067.01.T01:intron 45.0%
TTTGTTTAGCGTCTGGACTC+TGG + Chr3:78628491-78628510 MsG0380016067.01.T01:intron 45.0%
! GGATACGTATCGGGAAGTAT+CGG + Chr3:78631058-78631077 MsG0380016067.01.T01:intron 45.0%
! GGCATCACATAAGGTTCTAG+TGG - Chr3:78631307-78631326 None:intergenic 45.0%
!! GATACGTATCGGGAAGTATC+GGG + Chr3:78631059-78631078 MsG0380016067.01.T01:intron 45.0%
!! GCATTAATCTTGATGGGCTC+CGG + Chr3:78627386-78627405 MsG0380016067.01.T01:five_prime_UTR 45.0%
!! TGACTTGAGGGCATCTTTAG+TGG + Chr3:78629325-78629344 MsG0380016067.01.T01:intron 45.0%
!! ATAAAATAAAATAAAATTGA+AGG - Chr3:78627114-78627133 None:intergenic 5.0%
!!! TTAAAAATTTGTATTTTTTA+GGG - Chr3:78629476-78629495 None:intergenic 5.0%
!!! TTTAAAAATTTGTATTTTTT+AGG - Chr3:78629477-78629496 None:intergenic 5.0%
!!! TTTATTTTATTTTTTTGAAT+AGG + Chr3:78627124-78627143 MsG0380016067.01.T01:intron 5.0%
AGGACAGGGACCGGAAATTA+AGG + Chr3:78631245-78631264 MsG0380016067.01.T01:intron 50.0%
AGGATATTGCTGTGACTGGG+AGG + Chr3:78628700-78628719 MsG0380016067.01.T01:CDS 50.0%
ATCTCTCGTACTGTCCTAGG+AGG - Chr3:78631328-78631347 None:intergenic 50.0%
CACAGGTATCCGTGTGTATC+GGG + Chr3:78630970-78630989 MsG0380016067.01.T01:intron 50.0%
CAGCTACAGGAATGGAATCG+CGG + Chr3:78630118-78630137 MsG0380016067.01.T01:intron 50.0%
CATGGTCACATTCAGTCACC+TGG - Chr3:78627435-78627454 None:intergenic 50.0%
CCCAGTCACAGCAATATCCT+TGG - Chr3:78628700-78628719 None:intergenic 50.0%
CCCGGATACGAGATACGATA+CGG + Chr3:78630467-78630486 MsG0380016067.01.T01:intron 50.0%
CCGTATCGTATCTCGTATCC+GGG - Chr3:78630470-78630489 None:intergenic 50.0%
CGATACCAAGACTTCGACTG+TGG + Chr3:78630741-78630760 MsG0380016067.01.T01:intron 50.0%
CTCATCTCTCGTACTGTCCT+AGG - Chr3:78631331-78631350 None:intergenic 50.0%
GAACTTGGGGTAGGACCTAA+TGG + Chr3:78629359-78629378 MsG0380016067.01.T01:intron 50.0%
GAAGGGAGGCAAATCACTAG+AGG + Chr3:78627949-78627968 MsG0380016067.01.T01:CDS 50.0%
GACCGTATCTGTGTCGGATT+TGG - Chr3:78627707-78627726 None:intergenic 50.0%
GAGTAGATCAGATGGAAGGG+AGG + Chr3:78627935-78627954 MsG0380016067.01.T01:CDS 50.0%
GCCAAGGATATTGCTGTGAC+TGG + Chr3:78628696-78628715 MsG0380016067.01.T01:CDS 50.0%
GGAGGCAAATCACTAGAGGT+AGG + Chr3:78627953-78627972 MsG0380016067.01.T01:CDS 50.0%
TCTAGTGGCCGATCACCAAA+GGG - Chr3:78631292-78631311 None:intergenic 50.0%
TGTGTTGTGTGGTGTGGTGT+GGG + Chr3:78630835-78630854 MsG0380016067.01.T01:intron 50.0%
TTCTAGTGGCCGATCACCAA+AGG - Chr3:78631293-78631312 None:intergenic 50.0%
TTGTGTTGTGTGGTGTGGTG+TGG + Chr3:78630834-78630853 MsG0380016067.01.T01:intron 50.0%
TTTGGCCACAGTCGAAGTCT+TGG - Chr3:78630749-78630768 None:intergenic 50.0%
! ACTGCACCGATACGTCGATA+CGG + Chr3:78630497-78630516 MsG0380016067.01.T01:intron 50.0%
! GTCTTGGTATCGGACGACTT+TGG - Chr3:78630733-78630752 None:intergenic 50.0%
!! GTCCTAGGAGGCATCACATA+AGG - Chr3:78631316-78631335 None:intergenic 50.0%
!! TTAATCTTGATGGGCTCCGG+TGG + Chr3:78627389-78627408 MsG0380016067.01.T01:five_prime_UTR 50.0%
!! TTGAAGTATCGGGGCTTCAC+AGG + Chr3:78631128-78631147 MsG0380016067.01.T01:intron 50.0%
AAACTGGTCGCCGTCCACTT+TGG - Chr3:78630767-78630786 None:intergenic 55.0%
AAAGTGGACGGCGACCAGTT+TGG + Chr3:78630766-78630785 MsG0380016067.01.T01:intron 55.0%
ACATTCAGTCACCTGGCCCT+TGG - Chr3:78627428-78627447 None:intergenic 55.0%
ACCTCCCGAGAATCTGCATG+AGG - Chr3:78628584-78628603 None:intergenic 55.0%
ATCATTGCACGCCTTGCTCG+TGG - Chr3:78631355-78631374 None:intergenic 55.0%
ATCTCGTATCCGGGCTTCAC+AGG - Chr3:78630461-78630480 None:intergenic 55.0%
CCGATACGTCCCGATACACA+CGG - Chr3:78630982-78631001 None:intergenic 55.0%
CCGTGTGTATCGGGACGTAT+CGG + Chr3:78630979-78630998 MsG0380016067.01.T01:intron 55.0%
CGCGATTCCATTCCTGTAGC+TGG - Chr3:78630120-78630139 None:intergenic 55.0%
CTAGTGGCCGATCACCAAAG+GGG - Chr3:78631291-78631310 None:intergenic 55.0%
GACTTCGACTGTGGCCAAAG+TGG + Chr3:78630750-78630769 MsG0380016067.01.T01:intron 55.0%
GAGAGATGAGACCACGAGCA+AGG + Chr3:78631341-78631360 MsG0380016067.01.T01:CDS 55.0%
TATCGGTGCAGGATACGCAG+GGG + Chr3:78631086-78631105 MsG0380016067.01.T01:intron 55.0%
TCCTCATGCAGATTCTCGGG+AGG + Chr3:78628580-78628599 MsG0380016067.01.T01:CDS 55.0%
TCGACTGTGGCCAAAGTGGA+CGG + Chr3:78630754-78630773 MsG0380016067.01.T01:intron 55.0%
TGAGCAGCGACAGAATGCTG+AGG + Chr3:78631414-78631433 MsG0380016067.01.T01:CDS 55.0%
TGGGAGGAAGCTGACAGACA+AGG + Chr3:78628716-78628735 MsG0380016067.01.T01:CDS 55.0%
! GTATCGGTGCAGGATACGCA+GGG + Chr3:78631085-78631104 MsG0380016067.01.T01:intron 55.0%
! GTGAGCACCCCTTTGGTGAT+CGG + Chr3:78631281-78631300 MsG0380016067.01.T01:CDS 55.0%
! TGTTTTCAGAGAGCGGCAGC+TGG + Chr3:78627355-78627374 MsG0380016067.01.T01:five_prime_UTR 55.0%
!! CAAAGGGGTGCTCACTACCA+GGG - Chr3:78631276-78631295 None:intergenic 55.0%
!! GGGAAGTATCGGGCAGGTAT+CGG + Chr3:78631069-78631088 MsG0380016067.01.T01:intron 55.0%
!!! TGGCGGGTTTTCGATGCCAA+GGG + Chr3:78627409-78627428 MsG0380016067.01.T01:five_prime_UTR 55.0%
ATCGGTGCAGGATACGCAGG+GGG + Chr3:78631087-78631106 MsG0380016067.01.T01:intron 60.0%
TGCAGGATACGCAGGGGGTA+CGG + Chr3:78631092-78631111 MsG0380016067.01.T01:intron 60.0%
TGGTGTGGTGTGGGTCGTAC+TGG + Chr3:78630844-78630863 MsG0380016067.01.T01:intron 60.0%
! CCTGGTAGTGAGCACCCCTT+TGG + Chr3:78631274-78631293 MsG0380016067.01.T01:CDS 60.0%
! GGTTTTCGATGCCAAGGGCC+AGG + Chr3:78627414-78627433 MsG0380016067.01.T01:five_prime_UTR 60.0%
! TGGCATCGAAAACCCGCCAC+CGG - Chr3:78627408-78627427 None:intergenic 60.0%
!! ATCTTGATGGGCTCCGGTGG+CGG + Chr3:78627392-78627411 MsG0380016067.01.T01:five_prime_UTR 60.0%
!! CCAAAGGGGTGCTCACTACC+AGG - Chr3:78631277-78631296 None:intergenic 60.0%
!! CGTATCGGGAAGTATCGGGC+AGG + Chr3:78631063-78631082 MsG0380016067.01.T01:intron 60.0%
!! GGTATCGGTGCAGGATACGC+AGG + Chr3:78631084-78631103 MsG0380016067.01.T01:intron 60.0%
!! TATCGGGCAGGTATCGGTGC+AGG + Chr3:78631075-78631094 MsG0380016067.01.T01:intron 60.0%
!!! GTGGCGGGTTTTCGATGCCA+AGG + Chr3:78627408-78627427 MsG0380016067.01.T01:five_prime_UTR 60.0%
!! TCTTGATGGGCTCCGGTGGC+GGG + Chr3:78627393-78627412 MsG0380016067.01.T01:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 78626885 78631468 78626885 ID=MsG0380016067.01;Name=MsG0380016067.01
Chr3 mRNA 78626885 78631468 78626885 ID=MsG0380016067.01.T01;Parent=MsG0380016067.01;Name=MsG0380016067.01.T01;_AED=0.43;_eAED=0.63;_QI=301|0.16|0.28|1|0.16|0.14|7|0|264
Chr3 exon 78626885 78627018 78626885 ID=MsG0380016067.01.T01:exon:17495;Parent=MsG0380016067.01.T01
Chr3 exon 78627146 78627207 78627146 ID=MsG0380016067.01.T01:exon:17496;Parent=MsG0380016067.01.T01
Chr3 exon 78627343 78627445 78627343 ID=MsG0380016067.01.T01:exon:17497;Parent=MsG0380016067.01.T01
Chr3 exon 78627821 78628044 78627821 ID=MsG0380016067.01.T01:exon:17498;Parent=MsG0380016067.01.T01
Chr3 exon 78628558 78628792 78628558 ID=MsG0380016067.01.T01:exon:17499;Parent=MsG0380016067.01.T01
Chr3 exon 78628970 78629090 78628970 ID=MsG0380016067.01.T01:exon:17500;Parent=MsG0380016067.01.T01
Chr3 exon 78631252 78631468 78631252 ID=MsG0380016067.01.T01:exon:17501;Parent=MsG0380016067.01.T01
Chr3 five_prime_UTR 78626885 78627018 78626885 ID=MsG0380016067.01.T01:five_prime_utr;Parent=MsG0380016067.01.T01
Chr3 five_prime_UTR 78627146 78627207 78627146 ID=MsG0380016067.01.T01:five_prime_utr;Parent=MsG0380016067.01.T01
Chr3 five_prime_UTR 78627343 78627445 78627343 ID=MsG0380016067.01.T01:five_prime_utr;Parent=MsG0380016067.01.T01
Chr3 five_prime_UTR 78627821 78627822 78627821 ID=MsG0380016067.01.T01:five_prime_utr;Parent=MsG0380016067.01.T01
Chr3 CDS 78627823 78628044 78627823 ID=MsG0380016067.01.T01:cds;Parent=MsG0380016067.01.T01
Chr3 CDS 78628558 78628792 78628558 ID=MsG0380016067.01.T01:cds;Parent=MsG0380016067.01.T01
Chr3 CDS 78628970 78629090 78628970 ID=MsG0380016067.01.T01:cds;Parent=MsG0380016067.01.T01
Chr3 CDS 78631252 78631468 78631252 ID=MsG0380016067.01.T01:cds;Parent=MsG0380016067.01.T01
Gene Sequence

>MsG0380016067.01.T01

ATGAAAATATTAGAGAGATTTGGGATAGCACTTATAGTAGAAAAGATGATAGAAACTAGACTTAAGTGGTTTAAGAATGTGGATAGAAGTCATGTGGATGTGGTAGTAAGGAGAGTAGATCAGATGGAAGGGAGGCAAATCACTAGAGGTAGGGGAAGACCTAGAAAAACTAGAGAAACTATCAAGAAAGATCTAGAGATCAATGAGATGGAGAAAGATATGATCATTTTGCTGATTCATATGATCCTCATGCAGATTCTCGGGAGGTTAGCATCTCAAATAGCTACTGTAGTTATGGGAAAGGATAAGCCAACTTATACTCCTAATCGTGACGATGGAGATATGTGCATTGTGCTTAATGCCAAGGATATTGCTGTGACTGGGAGGAAGCTGACAGACAAGGTCTACTACTGGCATACAGGGCACGTTCTTTGCATTACTTCATTTAATACATTTTTGGCATGTAGGTATGTGGGCCACCTTAAGCAAAGAACTCTGAAGGATCAGATGGCCAAAGACCCTACAGATGTTATTCGCAAAGCTATTCTGCGCATGATTCCTAAAACAACTTACGTGATGGACCGGAAATTAAGGATCTTCCCTGGTAGTGAGCACCCCTTTGGTGATCGGCCACTAGAACCTTATGTGATGCCTCCTAGGACAGTACGAGAGATGAGACCACGAGCAAGGCGTGCAATGATTCGAGCACAGAAAAAGGCAGAGCAGCAACAAGAGAATGCTGAGCAGCGACAGAATGCTGAGGAAATGAAGAATAGCAAAAAGAGTGAAGCATAG

Protein sequence

>MsG0380016067.01.T01

MKILERFGIALIVEKMIETRLKWFKNVDRSHVDVVVRRVDQMEGRQITRGRGRPRKTRETIKKDLEINEMEKDMIILLIHMILMQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKVYYWHTGHVLCITSFNTFLACRYVGHLKQRTLKDQMAKDPTDVIRKAILRMIPKTTYVMDRKLRIFPGSEHPFGDRPLEPYVMPPRTVREMRPRARRAMIRAQKKAEQQQENAEQRQNAEEMKNSKKSEA*