AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680032809.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032809.01.T01 MTR_6g053280 98.361 183 2 1 1 182 87 269 3.15e-131 369
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032809.01.T01 AT5G52840 76.433 157 36 1 1 157 1 156 8.92e-86 250
MsG0680032809.01.T01 AT5G52840 80.769 104 20 0 1 104 1 104 1.39e-56 174
MsG0680032809.01.T01 AT4G28005 40.506 158 37 4 1 157 1 102 4.66e-24 91.7

Find 51 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGATTCAACTGTCTTTC+AGG 0.138753 6:+50140277 MsG0680032809.01.T01:three_prime_UTR
TGTCTTTATTCTTGCCATTA+AGG 0.186637 6:-50135634 None:intergenic
ATTTAGTTTGATGCAATAAA+AGG 0.239799 6:-50140237 None:intergenic
TTACGATACCCTTCATCTTC+TGG 0.262187 6:-50135750 None:intergenic
TTGTATGCATGAAATGATTT+TGG 0.278063 6:+50140362 MsG0680032809.01.T01:three_prime_UTR
ATCAACACTTCTCTTGCATT+TGG 0.286655 6:-50135687 None:intergenic
AGCGATGGCACGACCCTTAA+TGG 0.290344 6:+50135620 MsG0680032809.01.T01:CDS
GTCTTTATTCTTGCCATTAA+GGG 0.290759 6:-50135633 None:intergenic
TTTGTCAAGAAGAAGAAGAT+TGG 0.344948 6:+50135808 MsG0680032809.01.T01:CDS
TCAACACTTCTCTTGCATTT+GGG 0.351069 6:-50135686 None:intergenic
AGAGCTTTGAATTCTCCTTT+TGG 0.357093 6:+50140204 MsG0680032809.01.T01:three_prime_UTR
CTTTACAAGTCATAGACTTA+AGG 0.359250 6:+50135785 MsG0680032809.01.T01:CDS
AGACACCTTAGATGCACTTA+TGG 0.361826 6:+50140069 MsG0680032809.01.T01:CDS
ATCTCAATTTCGTGATCATC+AGG 0.365884 6:-50139974 None:intergenic
TATTGCAGAATGGGATCCTT+GGG 0.383342 6:+50139946 MsG0680032809.01.T01:intron
TTGTCAAGAAGAAGAAGATT+GGG 0.384208 6:+50135809 MsG0680032809.01.T01:CDS
GTCAGCCATAAGTGCATCTA+AGG 0.386612 6:-50140074 None:intergenic
AAGGTGTCTTGAAACTCCTT+AGG 0.391049 6:-50140055 None:intergenic
TCTAATGTAGCTGAAGTTCA+TGG 0.425368 6:-50140184 None:intergenic
AAACTCATTGGCTATATGAT+TGG 0.433002 6:+50135900 MsG0680032809.01.T01:CDS
GACCCTAAACGAGATCAAAA+AGG 0.437038 6:+50135725 MsG0680032809.01.T01:CDS
GCAAGAATAAAGACAACAAC+AGG 0.445081 6:+50135642 MsG0680032809.01.T01:CDS
CGGTGTTGAGGAACGTGCTT+CGG 0.452618 6:-50140019 None:intergenic
TCAGATTCAACTGTCTTTCA+GGG 0.453671 6:+50140278 MsG0680032809.01.T01:three_prime_UTR
TGAGGAACGTGCTTCGGAAT+TGG 0.463485 6:-50140013 None:intergenic
CAAGATGAACTCAAACTCAT+TGG 0.466880 6:+50135888 MsG0680032809.01.T01:CDS
ACAAGAAAAGATGGTGCTGC+TGG 0.482122 6:+50140136 MsG0680032809.01.T01:CDS
GTATTGCAGAATGGGATCCT+TGG 0.482980 6:+50139945 MsG0680032809.01.T01:intron
ATTGAGAATCGTCTTGGTTG+TGG 0.487668 6:+50135837 MsG0680032809.01.T01:CDS
GAATCGTCTTGGTTGTGGTC+AGG 0.495827 6:+50135842 MsG0680032809.01.T01:CDS
ATCAAAGATGGAAAAGATAG+AGG 0.503646 6:+50140099 MsG0680032809.01.T01:CDS
TGTTGAATAAATTAACATGT+TGG 0.504766 6:+50140435 MsG0680032809.01.T01:three_prime_UTR
TATGGCTGACCCATCAAAGA+TGG 0.511515 6:+50140087 MsG0680032809.01.T01:CDS
AAAGGAAAATCACATCCAAA+AGG 0.525164 6:-50140219 None:intergenic
AGGTGTCTTGAAACTCCTTA+GGG 0.525753 6:-50140054 None:intergenic
GAGAAGATTGAGAATCGTCT+TGG 0.529191 6:+50135831 MsG0680032809.01.T01:CDS
GTGGCTAAAACAAGAAAAGA+TGG 0.539846 6:+50140127 MsG0680032809.01.T01:CDS
TTAAGGGTCGTGCCATCGCT+CGG 0.541058 6:-50135617 None:intergenic
CCGTCCTCCTCGTCTCCCTA+AGG 0.545794 6:+50140039 MsG0680032809.01.T01:CDS
AGACGAGGAGGACGGTGTTG+AGG 0.584235 6:-50140031 None:intergenic
AAGACAACAACAGGAATCGT+AGG 0.600187 6:+50135651 MsG0680032809.01.T01:CDS
CAAGATGTTTCTCCGAGCGA+TGG 0.602157 6:+50135605 MsG0680032809.01.T01:exon
AAAAGGTTCCAGAAGATGAA+GGG 0.602923 6:+50135742 MsG0680032809.01.T01:CDS
GGAAAAGATAGAGGAACTTG+TGG 0.609007 6:+50140108 MsG0680032809.01.T01:CDS
TCTCAATTTCGTGATCATCA+GGG 0.633734 6:-50139973 None:intergenic
TGATCATCAGGGATACCCCA+AGG 0.657129 6:-50139962 None:intergenic
CCTTAGGGAGACGAGGAGGA+CGG 0.660867 6:-50140039 None:intergenic
TGATGATCACGAAATTGAGA+TGG 0.663792 6:+50139976 MsG0680032809.01.T01:CDS
TGAAACTCCTTAGGGAGACG+AGG 0.673297 6:-50140046 None:intergenic
AACTCCTTAGGGAGACGAGG+AGG 0.696168 6:-50140043 None:intergenic
ATTGCAGAATGGGATCCTTG+GGG 0.697431 6:+50139947 MsG0680032809.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATGTATATTACTAAAAT+AGG + Chr6:50138080-50138099 MsG0680032809.01.T01:intron 10.0%
!! AATTATTTCATAATCAATTC+TGG - Chr6:50137934-50137953 None:intergenic 15.0%
!! ATTATCAAACAATTAAGATT+TGG - Chr6:50139902-50139921 None:intergenic 15.0%
!! TACGAAATACTAATAAAAAA+TGG + Chr6:50139671-50139690 MsG0680032809.01.T01:intron 15.0%
!! TCTTATTATTTAATCATGAT+GGG - Chr6:50137555-50137574 None:intergenic 15.0%
!!! ATCTCTTTATTTGTATATAA+AGG + Chr6:50137602-50137621 MsG0680032809.01.T01:intron 15.0%
!!! TAACATAATTGATTTATGTT+TGG + Chr6:50137990-50138009 MsG0680032809.01.T01:intron 15.0%
!!! TATAATGTGTATTTTATGTT+TGG + Chr6:50139695-50139714 MsG0680032809.01.T01:intron 15.0%
!!! TCTCTTTATTTGTATATAAA+GGG + Chr6:50137603-50137622 MsG0680032809.01.T01:intron 15.0%
!! AAAAAGTAGGGAATTTATTT+GGG + Chr6:50137880-50137899 MsG0680032809.01.T01:intron 20.0%
!! AAAACATTAGACATTTAGTT+AGG + Chr6:50139587-50139606 MsG0680032809.01.T01:intron 20.0%
!! AAACATTAGACATTTAGTTA+GGG + Chr6:50139588-50139607 MsG0680032809.01.T01:intron 20.0%
!! AAATATCACATTTGAATCTA+AGG - Chr6:50136846-50136865 None:intergenic 20.0%
!! AAATTTAAACTCATAACACA+AGG - Chr6:50139488-50139507 None:intergenic 20.0%
!! AATTCAATACTCTTATCAAA+AGG + Chr6:50136781-50136800 MsG0680032809.01.T01:intron 20.0%
!! ATTCTAGTATTTAACTCTAA+TGG - Chr6:50137581-50137600 None:intergenic 20.0%
!! CATCATGATTAAATAATAAG+AGG + Chr6:50137554-50137573 MsG0680032809.01.T01:intron 20.0%
!! CCAATGATAATAATTGATTA+TGG + Chr6:50136686-50136705 MsG0680032809.01.T01:intron 20.0%
!! CCATAATCAATTATTATCAT+TGG - Chr6:50136689-50136708 None:intergenic 20.0%
!! CTCTTATTATTTAATCATGA+TGG - Chr6:50137556-50137575 None:intergenic 20.0%
!! GTTAGGAATAATGATAAATT+GGG + Chr6:50136034-50136053 MsG0680032809.01.T01:intron 20.0%
!! TGTTGAATAAATTAACATGT+TGG + Chr6:50140435-50140454 MsG0680032809.01.T01:three_prime_UTR 20.0%
!! TTAGACATATATTCAACTAT+AGG - Chr6:50138861-50138880 None:intergenic 20.0%
!! TTCTAGTATTTAACTCTAAT+GGG - Chr6:50137580-50137599 None:intergenic 20.0%
!!! AACTAAATGTCTAATGTTTT+AGG - Chr6:50139587-50139606 None:intergenic 20.0%
!!! ATTTAGTTTGATGCAATAAA+AGG - Chr6:50140240-50140259 None:intergenic 20.0%
!!! CTCTTTATTTGTATATAAAG+GGG + Chr6:50137604-50137623 MsG0680032809.01.T01:intron 20.0%
!!! GATCAAAATTCAATGATTTT+AGG + Chr6:50137206-50137225 MsG0680032809.01.T01:intron 20.0%
!!! GATTTTGAGATAATTGATTT+TGG + Chr6:50137954-50137973 MsG0680032809.01.T01:intron 20.0%
!!! TAAAAAAATAGGTTTTTCGA+AGG - Chr6:50139180-50139199 None:intergenic 20.0%
!!! TTCTATGTTGATTAATATGT+GGG - Chr6:50139113-50139132 None:intergenic 20.0%
!!! TTGGTTATTTTGTTTTTCTA+GGG + Chr6:50137298-50137317 MsG0680032809.01.T01:intron 20.0%
!!! TTGTTGTTCTTTTGTATTAT+CGG + Chr6:50138465-50138484 MsG0680032809.01.T01:intron 20.0%
!!! TTTACTATTTGTTGCAAATT+GGG + Chr6:50137450-50137469 MsG0680032809.01.T01:intron 20.0%
!!! TTTAGGATCTTCAAAAATTT+AGG - Chr6:50139570-50139589 None:intergenic 20.0%
!!! TTTCTATGTTGATTAATATG+TGG - Chr6:50139114-50139133 None:intergenic 20.0%
!!! TTTGGTTATTTTGTTTTTCT+AGG + Chr6:50137297-50137316 MsG0680032809.01.T01:intron 20.0%
!!! TTTTACTATTTGTTGCAAAT+TGG + Chr6:50137449-50137468 MsG0680032809.01.T01:intron 20.0%
!!! TTTTCCATTTGTATCAATAA+AGG + Chr6:50137756-50137775 MsG0680032809.01.T01:intron 20.0%
!!! TTTTGAATTTTTTTGTGATC+TGG + Chr6:50135961-50135980 MsG0680032809.01.T01:intron 20.0%
!!! TTTTTACAATGTTTTTGTTG+AGG + Chr6:50136012-50136031 MsG0680032809.01.T01:intron 20.0%
!!! TTTTTTTCACTTCATGAATT+TGG + Chr6:50139771-50139790 MsG0680032809.01.T01:intron 20.0%
! AACATTAGACATTTAGTTAG+GGG + Chr6:50139589-50139608 MsG0680032809.01.T01:intron 25.0%
! AAGCTAAAAGTGATTTAACT+TGG - Chr6:50138323-50138342 None:intergenic 25.0%
! AATCCATATTCGTATATGTT+TGG - Chr6:50138379-50138398 None:intergenic 25.0%
! ACAATAAATACGGTATAACA+CGG - Chr6:50138746-50138765 None:intergenic 25.0%
! ACATTCAATTCATTCATTTG+TGG + Chr6:50136583-50136602 MsG0680032809.01.T01:intron 25.0%
! AGATGGCAATTAAATAAAAC+AGG - Chr6:50137785-50137804 None:intergenic 25.0%
! ATATATTCAACTATAGGTGT+CGG - Chr6:50138855-50138874 None:intergenic 25.0%
! ATGTGGTTACATTCAATTAT+TGG + Chr6:50138913-50138932 MsG0680032809.01.T01:intron 25.0%
! ATTGAGAAAATTCTAAACCA+TGG - Chr6:50138427-50138446 None:intergenic 25.0%
! CAAACAAGAAAATAAACAGA+TGG - Chr6:50137802-50137821 None:intergenic 25.0%
! GAAAAAGTAGGGAATTTATT+TGG + Chr6:50137879-50137898 MsG0680032809.01.T01:intron 25.0%
! GAATGAAAGTTAGATGAAAA+TGG + Chr6:50137362-50137381 MsG0680032809.01.T01:intron 25.0%
! GATGGCAATTAAATAAAACA+GGG - Chr6:50137784-50137803 None:intergenic 25.0%
! GGTTAGGAATAATGATAAAT+TGG + Chr6:50136033-50136052 MsG0680032809.01.T01:intron 25.0%
! GTATTTCGTAAAATTCACAT+CGG - Chr6:50139661-50139680 None:intergenic 25.0%
! TAATTAGTAGGTCGTTAATT+AGG + Chr6:50137505-50137524 MsG0680032809.01.T01:intron 25.0%
! TTAGGTAGATTATTAGTAAG+TGG + Chr6:50137529-50137548 MsG0680032809.01.T01:intron 25.0%
! TTTCATCAATGCATAAAGAA+AGG - Chr6:50136239-50136258 None:intergenic 25.0%
!! CATGAATTTGGTAACTATTA+AGG + Chr6:50139783-50139802 MsG0680032809.01.T01:intron 25.0%
!! GAAATTAAGAGAAAGTGTAA+GGG + Chr6:50138160-50138179 MsG0680032809.01.T01:intron 25.0%
!! TGAAATTAAGAGAAAGTGTA+AGG + Chr6:50138159-50138178 MsG0680032809.01.T01:intron 25.0%
!! TGTTGTTCTTTTGTATTATC+GGG + Chr6:50138466-50138485 MsG0680032809.01.T01:intron 25.0%
!! TTCTGTATTTTATTGAGGTT+AGG + Chr6:50136639-50136658 MsG0680032809.01.T01:intron 25.0%
!! TTGTATGCATGAAATGATTT+TGG + Chr6:50140362-50140381 MsG0680032809.01.T01:three_prime_UTR 25.0%
!!! ATTGAATTTTGATCCATCAA+GGG - Chr6:50137200-50137219 None:intergenic 25.0%
!!! ATTTTGTTTTTCTAGGGTTT+TGG + Chr6:50137304-50137323 MsG0680032809.01.T01:intron 25.0%
!!! CATCTGTTTATTTTCTTGTT+TGG + Chr6:50137800-50137819 MsG0680032809.01.T01:intron 25.0%
!!! CTTGTTTTCTCATTGAAAAA+AGG - Chr6:50139073-50139092 None:intergenic 25.0%
!!! TGATCTGTTTTGTGTTTTTT+AGG + Chr6:50136613-50136632 MsG0680032809.01.T01:intron 25.0%
!!! TTTGTGTTTTTGTACAGTAA+GGG + Chr6:50136190-50136209 MsG0680032809.01.T01:intron 25.0%
AAAAAGGTAGTGACTTATGT+AGG - Chr6:50139057-50139076 None:intergenic 30.0%
AAAGGAAAATCACATCCAAA+AGG - Chr6:50140222-50140241 None:intergenic 30.0%
AAATTATTACCACTGTTGAC+GGG + Chr6:50137082-50137101 MsG0680032809.01.T01:intron 30.0%
ATATAGTATTCAATGCTCCA+TGG + Chr6:50138407-50138426 MsG0680032809.01.T01:intron 30.0%
ATCAAAGATGGAAAAGATAG+AGG + Chr6:50140099-50140118 MsG0680032809.01.T01:CDS 30.0%
ATGTATGTTGTTCATTCATG+TGG + Chr6:50138615-50138634 MsG0680032809.01.T01:intron 30.0%
ATTGAAATATCAACCCTTGA+TGG + Chr6:50137184-50137203 MsG0680032809.01.T01:intron 30.0%
CAAATTATTACCACTGTTGA+CGG + Chr6:50137081-50137100 MsG0680032809.01.T01:intron 30.0%
CAACCAAACATATACGAATA+TGG + Chr6:50138373-50138392 MsG0680032809.01.T01:intron 30.0%
CAGAATGGACACAATAAATA+CGG - Chr6:50138756-50138775 None:intergenic 30.0%
CAGATAATGACAGAGAAATA+GGG - Chr6:50139387-50139406 None:intergenic 30.0%
CCATTCTGTGTAACAAAAAA+TGG + Chr6:50138768-50138787 MsG0680032809.01.T01:intron 30.0%
CTTTACAAGTCATAGACTTA+AGG + Chr6:50135785-50135804 MsG0680032809.01.T01:CDS 30.0%
CTTTATTGAGGCTATGAATT+AGG + Chr6:50136415-50136434 MsG0680032809.01.T01:intron 30.0%
GAAAATGGTAGGCAATTATT+TGG + Chr6:50137377-50137396 MsG0680032809.01.T01:intron 30.0%
GAAAGTTAGATGAAAATGGT+AGG + Chr6:50137366-50137385 MsG0680032809.01.T01:intron 30.0%
GAACATAAATGTTGACAAAG+AGG - Chr6:50139310-50139329 None:intergenic 30.0%
GTATATAAAGGGGAATTCTT+TGG + Chr6:50137614-50137633 MsG0680032809.01.T01:intron 30.0%
GTCATTATCTGATATTATCG+AGG + Chr6:50139396-50139415 MsG0680032809.01.T01:intron 30.0%
GTCTTTATTCTTGCCATTAA+GGG - Chr6:50135636-50135655 None:intergenic 30.0%
GTTACTAGAGAAAAACAGAT+TGG - Chr6:50139237-50139256 None:intergenic 30.0%
GTTACTGTTAATTCGATTCT+AGG + Chr6:50137827-50137846 MsG0680032809.01.T01:intron 30.0%
GTTGTAATTACGTCAAAAGT+GGG - Chr6:50139030-50139049 None:intergenic 30.0%
TAAGAGCCTGTATTGAAAAA+AGG - Chr6:50139423-50139442 None:intergenic 30.0%
TACTAACAAATGACTAGACT+GGG - Chr6:50136885-50136904 None:intergenic 30.0%
TATGTGTTGTATTGCAGAAT+GGG + Chr6:50139937-50139956 MsG0680032809.01.T01:intron 30.0%
TCAGATAATGACAGAGAAAT+AGG - Chr6:50139388-50139407 None:intergenic 30.0%
TGTCTTATGTGTCTTTATTG+AGG + Chr6:50136403-50136422 MsG0680032809.01.T01:intron 30.0%
TGTCTTTATTCTTGCCATTA+AGG - Chr6:50135637-50135656 None:intergenic 30.0%
TGTTGTAATTACGTCAAAAG+TGG - Chr6:50139031-50139050 None:intergenic 30.0%
TTAAAACACCCTCTCATATT+AGG - Chr6:50137484-50137503 None:intergenic 30.0%
TTATGTGTTGTATTGCAGAA+TGG + Chr6:50139936-50139955 MsG0680032809.01.T01:intron 30.0%
TTGTCAAGAAGAAGAAGATT+GGG + Chr6:50135809-50135828 MsG0680032809.01.T01:CDS 30.0%
TTTGTCAAGAAGAAGAAGAT+TGG + Chr6:50135808-50135827 MsG0680032809.01.T01:CDS 30.0%
! AAACAGATTGGTGTTCTATT+TGG - Chr6:50139225-50139244 None:intergenic 30.0%
! AAACTCATTGGCTATATGAT+TGG + Chr6:50135900-50135919 MsG0680032809.01.T01:CDS 30.0%
! AACCTTTTTGATCTCGTTTA+GGG - Chr6:50135730-50135749 None:intergenic 30.0%
! ACGGAATAACTTTTCTGTTT+AGG + Chr6:50137651-50137670 MsG0680032809.01.T01:intron 30.0%
! CATACTAGAATCGATTCAAT+TGG + Chr6:50138207-50138226 MsG0680032809.01.T01:intron 30.0%
! CGGAATAACTTTTCTGTTTA+GGG + Chr6:50137652-50137671 MsG0680032809.01.T01:intron 30.0%
! CTATCTTTTCCATCTTTGAT+GGG - Chr6:50140099-50140118 None:intergenic 30.0%
! GACTGTTATGTTATGTGTTT+TGG + Chr6:50137279-50137298 MsG0680032809.01.T01:intron 30.0%
! GGATGTTCTGTATTTTATTG+AGG + Chr6:50136634-50136653 MsG0680032809.01.T01:intron 30.0%
! GGTTGATATTTCAATCACTT+AGG - Chr6:50137179-50137198 None:intergenic 30.0%
! GTAACTCATCATATTTTACC+TGG + Chr6:50138539-50138558 MsG0680032809.01.T01:intron 30.0%
! GTTCTAGGCTGTAAAAAAAT+AGG - Chr6:50139191-50139210 None:intergenic 30.0%
! TCATTCACACAATTCTAGAA+AGG - Chr6:50138686-50138705 None:intergenic 30.0%
! TCTATCTTTTCCATCTTTGA+TGG - Chr6:50140100-50140119 None:intergenic 30.0%
! TTGTTAGTAGCTGATGTTTT+GGG + Chr6:50136896-50136915 MsG0680032809.01.T01:intron 30.0%
! TTTGTTAGTAGCTGATGTTT+TGG + Chr6:50136895-50136914 MsG0680032809.01.T01:intron 30.0%
! TTTTAGTGCGTCATAATCAA+TGG + Chr6:50137133-50137152 MsG0680032809.01.T01:intron 30.0%
!! ACAATGTTTTTGTTGAGGTT+AGG + Chr6:50136017-50136036 MsG0680032809.01.T01:intron 30.0%
!! CATTGAATTTTGATCCATCA+AGG - Chr6:50137201-50137220 None:intergenic 30.0%
!! CGATCTGATTTGTGTATTTT+AGG + Chr6:50136150-50136169 MsG0680032809.01.T01:intron 30.0%
!! GATTTTAGGTGATTTCACTT+TGG + Chr6:50137220-50137239 MsG0680032809.01.T01:intron 30.0%
!! GGGTGTTTTAAGTAATTAGT+AGG + Chr6:50137493-50137512 MsG0680032809.01.T01:intron 30.0%
!! GTTGTCGATTTATGATGTTT+GGG + Chr6:50138035-50138054 MsG0680032809.01.T01:intron 30.0%
!! GTTTGTGTTTTTGTACAGTA+AGG + Chr6:50136189-50136208 MsG0680032809.01.T01:intron 30.0%
!! TAGGTTTTTCGAAGGAAAAA+TGG - Chr6:50139172-50139191 None:intergenic 30.0%
!! TCATTTGCTGTGTAAAATAC+AGG + Chr6:50139520-50139539 MsG0680032809.01.T01:intron 30.0%
!! TGTGGGTTTTATAGTCTTAA+TGG - Chr6:50139096-50139115 None:intergenic 30.0%
!! TGTTGTCGATTTATGATGTT+TGG + Chr6:50138034-50138053 MsG0680032809.01.T01:intron 30.0%
!!! AGGCTCTTAATTTTTTTCAG+TGG + Chr6:50139434-50139453 MsG0680032809.01.T01:intron 30.0%
!!! ATTCTTTGGAGTTTTAGAGT+TGG + Chr6:50137628-50137647 MsG0680032809.01.T01:intron 30.0%
!!! CCATTTTTTGTTACACAGAA+TGG - Chr6:50138771-50138790 None:intergenic 30.0%
!!! CCTTTCTTTTTTGTTACAGA+GGG - Chr6:50136967-50136986 None:intergenic 30.0%
!!! TCAACCAGTTCAAGTTTTTT+TGG - Chr6:50140318-50140337 None:intergenic 30.0%
!!! TTCAAGTTTTTTTGGAGCAA+AGG - Chr6:50140310-50140329 None:intergenic 30.0%
!!! TTTTAGAGTGTAAAGTGAGT+AGG + Chr6:50136470-50136489 MsG0680032809.01.T01:intron 30.0%
AAAAAGGTTCCAGAAGATGA+AGG + Chr6:50135741-50135760 MsG0680032809.01.T01:CDS 35.0%
AAAAGGTTCCAGAAGATGAA+GGG + Chr6:50135742-50135761 MsG0680032809.01.T01:CDS 35.0%
AATGGTAGGCAATTATTTGG+AGG + Chr6:50137380-50137399 MsG0680032809.01.T01:intron 35.0%
ACTACATTACAACCAAGTGA+GGG - Chr6:50136931-50136950 None:intergenic 35.0%
ATCAACACTTCTCTTGCATT+TGG - Chr6:50135690-50135709 None:intergenic 35.0%
ATCTCAATTTCGTGATCATC+AGG - Chr6:50139977-50139996 None:intergenic 35.0%
ATGCATCTTACTACTAAAGC+TGG + Chr6:50139806-50139825 MsG0680032809.01.T01:intron 35.0%
ATGGTAGGCAATTATTTGGA+GGG + Chr6:50137381-50137400 MsG0680032809.01.T01:intron 35.0%
CAAGATGAACTCAAACTCAT+TGG + Chr6:50135888-50135907 MsG0680032809.01.T01:CDS 35.0%
CAGTGGTTCTTATTCTTGTT+TGG + Chr6:50139451-50139470 MsG0680032809.01.T01:intron 35.0%
CATATAGGAATAGAGAGACT+TGG - Chr6:50139351-50139370 None:intergenic 35.0%
CCCTCTGTAACAAAAAAGAA+AGG + Chr6:50136964-50136983 MsG0680032809.01.T01:intron 35.0%
CTAACTAGGAAGAGAATTGA+TGG - Chr6:50139633-50139652 None:intergenic 35.0%
CTACTAACAAATGACTAGAC+TGG - Chr6:50136886-50136905 None:intergenic 35.0%
CTTCATGACTGTTTCATAGT+TGG + Chr6:50138952-50138971 MsG0680032809.01.T01:intron 35.0%
GCAAGAATAAAGACAACAAC+AGG + Chr6:50135642-50135661 MsG0680032809.01.T01:CDS 35.0%
GGAGACTTGCAAAAACATAT+AGG - Chr6:50139366-50139385 None:intergenic 35.0%
GGTGCCTTTATTGATACAAA+TGG - Chr6:50137763-50137782 None:intergenic 35.0%
GTAGGTCGTTAATTAGGTTT+AGG + Chr6:50137511-50137530 MsG0680032809.01.T01:intron 35.0%
GTGAGTATGATCAATAGTCT+CGG + Chr6:50136757-50136776 MsG0680032809.01.T01:intron 35.0%
GTGGCTAAAACAAGAAAAGA+TGG + Chr6:50140127-50140146 MsG0680032809.01.T01:CDS 35.0%
GTTCTATTTGGATACAGTTG+TGG - Chr6:50139213-50139232 None:intergenic 35.0%
TCAACACTTCTCTTGCATTT+GGG - Chr6:50135689-50135708 None:intergenic 35.0%
TCAGATTCAACTGTCTTTCA+GGG + Chr6:50140278-50140297 MsG0680032809.01.T01:three_prime_UTR 35.0%
TCTAATGTAGCTGAAGTTCA+TGG - Chr6:50140187-50140206 None:intergenic 35.0%
TCTCAATTTCGTGATCATCA+GGG - Chr6:50139976-50139995 None:intergenic 35.0%
TGATGATCACGAAATTGAGA+TGG + Chr6:50139976-50139995 MsG0680032809.01.T01:CDS 35.0%
TGCTCCAAAAAAACTTGAAC+TGG + Chr6:50140311-50140330 MsG0680032809.01.T01:three_prime_UTR 35.0%
TTCAGATTCAACTGTCTTTC+AGG + Chr6:50140277-50140296 MsG0680032809.01.T01:three_prime_UTR 35.0%
TTTAGGTGATTTCACTTTGG+TGG + Chr6:50137223-50137242 MsG0680032809.01.T01:intron 35.0%
! AATTGTGTGAATGAGTACTG+AGG + Chr6:50138692-50138711 MsG0680032809.01.T01:intron 35.0%
! GAACCTTTTTGATCTCGTTT+AGG - Chr6:50135731-50135750 None:intergenic 35.0%
! GTTCTTTTGTATTATCGGGT+TGG + Chr6:50138470-50138489 MsG0680032809.01.T01:intron 35.0%
! TACATAGAGCATTATGTACC+AGG - Chr6:50138560-50138579 None:intergenic 35.0%
! TGTTAGTAGCTGATGTTTTG+GGG + Chr6:50136897-50136916 MsG0680032809.01.T01:intron 35.0%
!! AATTCGATTCTAGGATCCAT+GGG + Chr6:50137836-50137855 MsG0680032809.01.T01:intron 35.0%
!! ATTGTGTGAATGAGTACTGA+GGG + Chr6:50138693-50138712 MsG0680032809.01.T01:intron 35.0%
!! TAATTCGATTCTAGGATCCA+TGG + Chr6:50137835-50137854 MsG0680032809.01.T01:intron 35.0%
!!! AGAGCTTTGAATTCTCCTTT+TGG + Chr6:50140204-50140223 MsG0680032809.01.T01:three_prime_UTR 35.0%
!!! CCTTTGATAGGAAGTGTTTT+CGG + Chr6:50136518-50136537 MsG0680032809.01.T01:intron 35.0%
!!! GCCTTTCTTTTTTGTTACAG+AGG - Chr6:50136968-50136987 None:intergenic 35.0%
!!! GTTTTTTTGGAGCAAAGGAT+TGG - Chr6:50140305-50140324 None:intergenic 35.0%
!!! TTTGGAGTTTTAGAGTTGGA+CGG + Chr6:50137632-50137651 MsG0680032809.01.T01:intron 35.0%
AACAAATGACTAGACTGGGT+CGG - Chr6:50136881-50136900 None:intergenic 40.0%
AAGACAACAACAGGAATCGT+AGG + Chr6:50135651-50135670 MsG0680032809.01.T01:CDS 40.0%
AGACACCTTAGATGCACTTA+TGG + Chr6:50140069-50140088 MsG0680032809.01.T01:CDS 40.0%
AGGTGTCTTGAAACTCCTTA+GGG - Chr6:50140057-50140076 None:intergenic 40.0%
ATCCATGGGTTCCTATCATT+GGG + Chr6:50137850-50137869 MsG0680032809.01.T01:intron 40.0%
ATTGAGAATCGTCTTGGTTG+TGG + Chr6:50135837-50135856 MsG0680032809.01.T01:CDS 40.0%
ATTGCACCAACACCTTTGAT+AGG + Chr6:50136506-50136525 MsG0680032809.01.T01:intron 40.0%
CCAGATGCTTTAGCTAATCT+TGG + Chr6:50136815-50136834 MsG0680032809.01.T01:intron 40.0%
CCGAAAACACTTCCTATCAA+AGG - Chr6:50136521-50136540 None:intergenic 40.0%
CGTTAGGACCTAATATGAGA+GGG + Chr6:50137473-50137492 MsG0680032809.01.T01:intron 40.0%
CTACATTACAACCAAGTGAG+GGG - Chr6:50136930-50136949 None:intergenic 40.0%
GACCCTAAACGAGATCAAAA+AGG + Chr6:50135725-50135744 MsG0680032809.01.T01:CDS 40.0%
GACTACATTACAACCAAGTG+AGG - Chr6:50136932-50136951 None:intergenic 40.0%
GAGAAGATTGAGAATCGTCT+TGG + Chr6:50135831-50135850 MsG0680032809.01.T01:CDS 40.0%
GCTACAGATAGTAGCTTCTT+TGG - Chr6:50138233-50138252 None:intergenic 40.0%
GGAAAAGATAGAGGAACTTG+TGG + Chr6:50140108-50140127 MsG0680032809.01.T01:CDS 40.0%
GTTGAAACTCTCTAAACGTG+CGG - Chr6:50138350-50138369 None:intergenic 40.0%
TATTGCAGAATGGGATCCTT+GGG + Chr6:50139946-50139965 MsG0680032809.01.T01:intron 40.0%
TGTAAGGGTAGTTAGGTAAG+AGG + Chr6:50138175-50138194 MsG0680032809.01.T01:intron 40.0%
TTACGATACCCTTCATCTTC+TGG - Chr6:50135753-50135772 None:intergenic 40.0%
TTGGATACAGTTGTGGTTCT+AGG - Chr6:50139206-50139225 None:intergenic 40.0%
TTTGTTGCAAATTGGGCGTT+AGG + Chr6:50137457-50137476 MsG0680032809.01.T01:intron 40.0%
! AAAAATGGCGTTGAACTTGG+CGG - Chr6:50139157-50139176 None:intergenic 40.0%
! AAGGTGTCTTGAAACTCCTT+AGG - Chr6:50140058-50140077 None:intergenic 40.0%
! ACACTTCCTATCAAAGGTGT+TGG - Chr6:50136515-50136534 None:intergenic 40.0%
! AGCTGAAGTTCATGGCTTTT+TGG - Chr6:50140179-50140198 None:intergenic 40.0%
! AGGAAAAATGGCGTTGAACT+TGG - Chr6:50139160-50139179 None:intergenic 40.0%
! CCAAGATTAGCTAAAGCATC+TGG - Chr6:50136818-50136837 None:intergenic 40.0%
! GAGAAAGTGTAAGGGTAGTT+AGG + Chr6:50138168-50138187 MsG0680032809.01.T01:intron 40.0%
! GCTGAAGTTCATGGCTTTTT+GGG - Chr6:50140178-50140197 None:intergenic 40.0%
! GTAATGTAGTCCCTTTTTCC+CGG + Chr6:50136941-50136960 MsG0680032809.01.T01:intron 40.0%
! GTTTTTGACACTGACACATG+TGG + Chr6:50137034-50137053 MsG0680032809.01.T01:intron 40.0%
! TTTCTGTTTAGGGCTAGAGT+AGG + Chr6:50137662-50137681 MsG0680032809.01.T01:intron 40.0%
! TTTGGGATGAAGTGTGTGTT+TGG + Chr6:50137897-50137916 MsG0680032809.01.T01:intron 40.0%
!! TATCAAAGGTGTTGGTGCAA+TGG - Chr6:50136507-50136526 None:intergenic 40.0%
!!! CGAGGACCTTTTTTCAATAC+AGG + Chr6:50139414-50139433 MsG0680032809.01.T01:intron 40.0%
!!! CTTTTTGGGTTCTTCATTGG+AGG - Chr6:50140164-50140183 None:intergenic 40.0%
!!! TCTTTTTTGTTACAGAGGGC+CGG - Chr6:50136963-50136982 None:intergenic 40.0%
!!! TGGCTTTTTGGGTTCTTCAT+TGG - Chr6:50140167-50140186 None:intergenic 40.0%
AAAGTGGGCACAACTTGTGT+CGG - Chr6:50139015-50139034 None:intergenic 45.0%
AGGATTCCTCTGAGTTGTGT+CGG + Chr6:50137682-50137701 MsG0680032809.01.T01:intron 45.0%
AGTTAGGTAAGAGGACAGCA+AGG + Chr6:50138184-50138203 MsG0680032809.01.T01:intron 45.0%
ATTGCAGAATGGGATCCTTG+GGG + Chr6:50139947-50139966 MsG0680032809.01.T01:intron 45.0%
GATCCATGGGTTCCTATCAT+TGG + Chr6:50137849-50137868 MsG0680032809.01.T01:intron 45.0%
GCGTTAGGACCTAATATGAG+AGG + Chr6:50137472-50137491 MsG0680032809.01.T01:intron 45.0%
GTATTGCAGAATGGGATCCT+TGG + Chr6:50139945-50139964 MsG0680032809.01.T01:intron 45.0%
GTCAGCCATAAGTGCATCTA+AGG - Chr6:50140077-50140096 None:intergenic 45.0%
TAGAGAGACTTGGAACAGAG+AGG - Chr6:50139341-50139360 None:intergenic 45.0%
TATGGCTGACCCATCAAAGA+TGG + Chr6:50140087-50140106 MsG0680032809.01.T01:CDS 45.0%
TCCATGGGTTCCTATCATTG+GGG + Chr6:50137851-50137870 MsG0680032809.01.T01:intron 45.0%
TCTAAGTGTCCGACATGTGT+TGG + Chr6:50138876-50138895 MsG0680032809.01.T01:intron 45.0%
TGGTGTCTGACATCAACATG+TGG + Chr6:50138896-50138915 MsG0680032809.01.T01:intron 45.0%
TGTCAGACACCAACACATGT+CGG - Chr6:50138888-50138907 None:intergenic 45.0%
TTGTGTCGGAGCTTTGCTTT+GGG + Chr6:50137696-50137715 MsG0680032809.01.T01:intron 45.0%
! CACGTGTGTTGTGTTGATGT+CGG - Chr6:50136560-50136579 None:intergenic 45.0%
! GTGTGTGCGCTTTTCAATGT+GGG + Chr6:50137336-50137355 MsG0680032809.01.T01:intron 45.0%
! TATTACCACTGTTGACGGGT+TGG + Chr6:50137086-50137105 MsG0680032809.01.T01:intron 45.0%
! TGTGTGTGCGCTTTTCAATG+TGG + Chr6:50137335-50137354 MsG0680032809.01.T01:intron 45.0%
! TTTTCAGCACCCCCAATGAT+AGG - Chr6:50137864-50137883 None:intergenic 45.0%
!! ACAAGAAAAGATGGTGCTGC+TGG + Chr6:50140136-50140155 MsG0680032809.01.T01:CDS 45.0%
!! ATTGGGGGTGCTGAAAAAGT+AGG + Chr6:50137867-50137886 MsG0680032809.01.T01:intron 45.0%
!! GAAGTGTGTGTTTGGTTCTG+CGG + Chr6:50137905-50137924 MsG0680032809.01.T01:intron 45.0%
!! GAATGAGTACTGAGGGAAAC+AGG + Chr6:50138700-50138719 MsG0680032809.01.T01:intron 45.0%
!! TCACATCGGTGTCACTAACT+AGG - Chr6:50139647-50139666 None:intergenic 45.0%
!! TTGGGGGTGCTGAAAAAGTA+GGG + Chr6:50137868-50137887 MsG0680032809.01.T01:intron 45.0%
!!! CTTTTTTGTTACAGAGGGCC+GGG - Chr6:50136962-50136981 None:intergenic 45.0%
AAAGCTCCGACACAACTCAG+AGG - Chr6:50137691-50137710 None:intergenic 50.0%
AAGTGGGCACAACTTGTGTC+GGG - Chr6:50139014-50139033 None:intergenic 50.0%
ACCACAAACACCTGTGCAGA+AGG + Chr6:50136993-50137012 MsG0680032809.01.T01:intron 50.0%
ACCTTCTGCACAGGTGTTTG+TGG - Chr6:50136997-50137016 None:intergenic 50.0%
CAAGATGTTTCTCCGAGCGA+TGG + Chr6:50135605-50135624 MsG0680032809.01.T01:exon 50.0%
CCATGGGTTCCTATCATTGG+GGG + Chr6:50137852-50137871 MsG0680032809.01.T01:intron 50.0%
CGTTGAACTTGGCGGTTGAT+TGG - Chr6:50139149-50139168 None:intergenic 50.0%
GAATCGTCTTGGTTGTGGTC+AGG + Chr6:50135842-50135861 MsG0680032809.01.T01:CDS 50.0%
GTTGTGTCGGAGCTTTGCTT+TGG + Chr6:50137695-50137714 MsG0680032809.01.T01:intron 50.0%
TAACACCAACCCGTCAACAG+TGG - Chr6:50137094-50137113 None:intergenic 50.0%
TGAAACTCCTTAGGGAGACG+AGG - Chr6:50140049-50140068 None:intergenic 50.0%
TGAGGAACGTGCTTCGGAAT+TGG - Chr6:50140016-50140035 None:intergenic 50.0%
TGATCATCAGGGATACCCCA+AGG - Chr6:50139965-50139984 None:intergenic 50.0%
TTACAGAGGGCCGGGAAAAA+GGG - Chr6:50136954-50136973 None:intergenic 50.0%
! TGTTGTGTTGATGTCGGACG+CGG - Chr6:50136554-50136573 None:intergenic 50.0%
!! AGGTGTTGGTGCAATGGAGA+CGG - Chr6:50136501-50136520 None:intergenic 50.0%
!! TGACGGGTTGGTGTTATGTC+TGG + Chr6:50137098-50137117 MsG0680032809.01.T01:intron 50.0%
AACTCCTTAGGGAGACGAGG+AGG - Chr6:50140046-50140065 None:intergenic 55.0%
AACTTGTGTCGGGGACTCGA+GGG - Chr6:50139004-50139023 None:intergenic 55.0%
AGCGATGGCACGACCCTTAA+TGG + Chr6:50135620-50135639 MsG0680032809.01.T01:CDS 55.0%
AGTGGGCACAACTTGTGTCG+GGG - Chr6:50139013-50139032 None:intergenic 55.0%
CCCCCAATGATAGGAACCCA+TGG - Chr6:50137855-50137874 None:intergenic 55.0%
GTGAGACACACCTTCTGCAC+AGG - Chr6:50137006-50137025 None:intergenic 55.0%
GTTACAGAGGGCCGGGAAAA+AGG - Chr6:50136955-50136974 None:intergenic 55.0%
TTAAGGGTCGTGCCATCGCT+CGG - Chr6:50135620-50135639 None:intergenic 55.0%
! CGGTGTTGAGGAACGTGCTT+CGG - Chr6:50140022-50140041 None:intergenic 55.0%
CAACTTGTGTCGGGGACTCG+AGG - Chr6:50139005-50139024 None:intergenic 60.0%
CCTTAGGGAGACGAGGAGGA+CGG - Chr6:50140042-50140061 None:intergenic 60.0%
GGGGATAGCTACCCCTCACT+TGG + Chr6:50136916-50136935 MsG0680032809.01.T01:intron 60.0%
! AGACGAGGAGGACGGTGTTG+AGG - Chr6:50140034-50140053 None:intergenic 60.0%
!! CGGGGACTCGAGGGTATCTA+GGG - Chr6:50138995-50139014 None:intergenic 60.0%
!! GGGGACTCGAGGGTATCTAG+GGG - Chr6:50138994-50139013 None:intergenic 60.0%
!! TCGGGGACTCGAGGGTATCT+AGG - Chr6:50138996-50139015 None:intergenic 60.0%
CCGTCCTCCTCGTCTCCCTA+AGG + Chr6:50140039-50140058 MsG0680032809.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr6 gene 50135558 50140461 50135558 ID=MsG0680032809.01;Name=MsG0680032809.01
Chr6 mRNA 50135558 50140461 50135558 ID=MsG0680032809.01.T01;Parent=MsG0680032809.01;Name=MsG0680032809.01.T01;_AED=0.49;_eAED=0.49;_QI=51|1|1|1|1|1|2|272|182
Chr6 exon 50139954 50140461 50139954 ID=MsG0680032809.01.T01:exon:10616;Parent=MsG0680032809.01.T01
Chr6 exon 50135558 50135921 50135558 ID=MsG0680032809.01.T01:exon:10615;Parent=MsG0680032809.01.T01
Chr6 five_prime_UTR 50135558 50135608 50135558 ID=MsG0680032809.01.T01:five_prime_utr;Parent=MsG0680032809.01.T01
Chr6 CDS 50135609 50135921 50135609 ID=MsG0680032809.01.T01:cds;Parent=MsG0680032809.01.T01
Chr6 CDS 50139954 50140189 50139954 ID=MsG0680032809.01.T01:cds;Parent=MsG0680032809.01.T01
Chr6 three_prime_UTR 50140190 50140461 50140190 ID=MsG0680032809.01.T01:three_prime_utr;Parent=MsG0680032809.01.T01
Gene Sequence

>MsG0680032809.01.T01

ATGTTTCTCCGAGCGATGGCACGACCCTTAATGGCAAGAATAAAGACAACAACAGGAATCGTAGGACTAGACGTAGTCCCAAATGCAAGAGAAGTGTTGATCAATCTATACAGTAAGACCCTAAACGAGATCAAAAAGGTTCCAGAAGATGAAGGGTATCGTAAAGCTGTTGAAAGCTTTACAAGTCATAGACTTAAGGTTTGTCAAGAAGAAGAAGATTGGGAGAAGATTGAGAATCGTCTTGGTTGTGGTCAGGTTGAAGAGCTTATTGAAGAAGCTCAAGATGAACTCAAACTCATTGGCTATATGATTGAATGGGATCCTTGGGGTATCCCTGATGATCACGAAATTGAGATGGTTGAAAACGATGCACCAATTCCGAAGCACGTTCCTCAACACCGTCCTCCTCGTCTCCCTAAGGAGTTTCAAGACACCTTAGATGCACTTATGGCTGACCCATCAAAGATGGAAAAGATAGAGGAACTTGTGGCTAAAACAAGAAAAGATGGTGCTGCTGGAACCTCCAATGAAGAACCCAAAAAGCCATGA

Protein sequence

>MsG0680032809.01.T01

MFLRAMARPLMARIKTTTGIVGLDVVPNAREVLINLYSKTLNEIKKVPEDEGYRKAVESFTSHRLKVCQEEEDWEKIENRLGCGQVEELIEEAQDELKLIGYMIEWDPWGIPDDHEIEMVENDAPIPKHVPQHRPPRLPKEFQDTLDALMADPSKMEKIEELVAKTRKDGAAGTSNEEPKKP*