Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780039848.01.T01 | XP_003624206.1 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 3.76E-89 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780039848.01.T01 | O80800 | 72.18 | 133 | 27 | 3 | 1 | 130 | 1 | 126 | 6.55E-59 | 181 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780039848.01.T01 | B7FLI7 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 1.80e-89 | 265 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048687.01 | MsG0780039848.01 | 0.824117 | 9.603701e-54 | 8.428827e-51 |
| MsG0080048971.01 | MsG0780039848.01 | 0.831462 | 1.646710e-55 | 1.788293e-52 |
| MsG0180000339.01 | MsG0780039848.01 | 0.808228 | 3.434234e-50 | 1.952825e-47 |
| MsG0180000575.01 | MsG0780039848.01 | 0.831646 | 1.483615e-55 | 1.619963e-52 |
| MsG0180000614.01 | MsG0780039848.01 | 0.867205 | 1.624198e-65 | 5.623588e-62 |
| MsG0180000615.01 | MsG0780039848.01 | 0.852714 | 3.850879e-61 | 8.118630e-58 |
| MsG0180000743.01 | MsG0780039848.01 | 0.821643 | 3.619918e-53 | 2.961948e-50 |
| MsG0180002547.01 | MsG0780039848.01 | 0.837165 | 6.105936e-57 | 7.864973e-54 |
| MsG0180003651.01 | MsG0780039848.01 | 0.818398 | 2.001216e-52 | 1.496470e-49 |
| MsG0180003793.01 | MsG0780039848.01 | 0.867438 | 1.368147e-65 | 4.776892e-62 |
| MsG0180004009.01 | MsG0780039848.01 | 0.835317 | 1.800787e-56 | 2.194344e-53 |
| MsG0180004129.01 | MsG0780039848.01 | 0.823245 | 1.536401e-53 | 1.315680e-50 |
| MsG0180004130.01 | MsG0780039848.01 | 0.847541 | 1.083111e-59 | 1.931703e-56 |
| MsG0180004509.01 | MsG0780039848.01 | 0.818541 | 1.857328e-52 | 1.394269e-49 |
| MsG0180004854.01 | MsG0780039848.01 | 0.829485 | 5.014980e-55 | 5.139528e-52 |
| MsG0180004861.01 | MsG0780039848.01 | 0.868285 | 7.316429e-66 | 2.631949e-62 |
| MsG0180005334.01 | MsG0780039848.01 | 0.814318 | 1.637436e-51 | 1.095182e-48 |
| MsG0280010776.01 | MsG0780039848.01 | 0.848982 | 4.330612e-60 | 8.089392e-57 |
| MsG0280010801.01 | MsG0780039848.01 | 0.848170 | 7.269396e-60 | 1.322451e-56 |
| MsG0280011234.01 | MsG0780039848.01 | 0.810084 | 1.374211e-50 | 8.206753e-48 |
| MsG0380011747.01 | MsG0780039848.01 | 0.813127 | 2.994988e-51 | 1.939252e-48 |
| MsG0380012073.01 | MsG0780039848.01 | 0.851403 | 9.079617e-61 | 1.835802e-57 |
| MsG0680031628.01 | MsG0780039848.01 | 0.811699 | 6.144700e-51 | 3.829695e-48 |
| MsG0680032770.01 | MsG0780039848.01 | 0.818745 | 1.669534e-52 | 1.260334e-49 |
| MsG0480018477.01 | MsG0780039848.01 | 0.822748 | 2.006713e-53 | 1.694608e-50 |
| MsG0480019380.01 | MsG0780039848.01 | 0.834176 | 3.486279e-56 | 4.104320e-53 |
| MsG0480020913.01 | MsG0780039848.01 | 0.803076 | 4.141859e-49 | 2.062006e-46 |
| MsG0480020959.01 | MsG0780039848.01 | 0.823021 | 1.733270e-53 | 1.475019e-50 |
| MsG0480021006.01 | MsG0780039848.01 | 0.843636 | 1.240699e-58 | 1.953501e-55 |
| MsG0480021159.01 | MsG0780039848.01 | 0.840311 | 9.384826e-58 | 1.331457e-54 |
| MsG0480021706.01 | MsG0780039848.01 | 0.821622 | 3.661405e-53 | 2.994046e-50 |
| MsG0480022223.01 | MsG0780039848.01 | 0.829680 | 4.495702e-55 | 4.634180e-52 |
| MsG0480022913.01 | MsG0780039848.01 | 0.819971 | 8.776434e-53 | 6.855204e-50 |
| MsG0480022960.01 | MsG0780039848.01 | 0.885665 | 6.683214e-72 | 4.627750e-68 |
| MsG0480023149.01 | MsG0780039848.01 | 0.837155 | 6.142269e-57 | 7.909330e-54 |
| MsG0480023221.01 | MsG0780039848.01 | 0.829557 | 4.815066e-55 | 4.944996e-52 |
| MsG0480023467.01 | MsG0780039848.01 | 0.808214 | 3.457658e-50 | 1.965445e-47 |
| MsG0480023738.01 | MsG0780039848.01 | 0.806665 | 7.368447e-50 | 4.022378e-47 |
| MsG0480023771.01 | MsG0780039848.01 | 0.850305 | 1.850756e-60 | 3.609569e-57 |
| MsG0580024084.01 | MsG0780039848.01 | 0.809375 | 1.952094e-50 | 1.144238e-47 |
| MsG0580024369.01 | MsG0780039848.01 | 0.819607 | 1.062895e-52 | 8.217572e-50 |
| MsG0580025268.01 | MsG0780039848.01 | 0.842710 | 2.190194e-58 | 3.348891e-55 |
| MsG0380015027.01 | MsG0780039848.01 | 0.831005 | 2.133042e-55 | 2.285217e-52 |
| MsG0380015435.01 | MsG0780039848.01 | 0.811544 | 6.640419e-51 | 4.121999e-48 |
| MsG0380016290.01 | MsG0780039848.01 | 0.847073 | 1.456348e-59 | 2.558599e-56 |
| MsG0380016559.01 | MsG0780039848.01 | 0.844316 | 8.152919e-59 | 1.311117e-55 |
| MsG0380016560.01 | MsG0780039848.01 | 0.843994 | 9.950523e-59 | 1.584217e-55 |
| MsG0380016860.01 | MsG0780039848.01 | 0.802656 | 5.059250e-49 | 2.491970e-46 |
| MsG0380017382.01 | MsG0780039848.01 | 0.844190 | 8.813296e-59 | 1.411949e-55 |
| MsG0380017540.01 | MsG0780039848.01 | 0.809503 | 1.832015e-50 | 1.077489e-47 |
| MsG0380017947.01 | MsG0780039848.01 | 0.804727 | 1.879720e-49 | 9.765195e-47 |
| MsG0380018033.01 | MsG0780039848.01 | 0.831021 | 2.113944e-55 | 2.265750e-52 |
| MsG0480018110.01 | MsG0780039848.01 | 0.817347 | 3.456427e-52 | 2.510871e-49 |
| MsG0580027043.01 | MsG0780039848.01 | 0.805556 | 1.260807e-49 | 6.690352e-47 |
| MsG0580029132.01 | MsG0780039848.01 | 0.849661 | 2.801824e-60 | 5.350321e-57 |
| MsG0280006483.01 | MsG0780039848.01 | 0.848814 | 4.823300e-60 | 8.960347e-57 |
| MsG0280006836.01 | MsG0780039848.01 | 0.801209 | 1.003243e-48 | 4.763462e-46 |
| MsG0280006993.01 | MsG0780039848.01 | 0.859806 | 3.204459e-63 | 8.571292e-60 |
| MsG0280007787.01 | MsG0780039848.01 | 0.840645 | 7.676923e-58 | 1.100508e-54 |
| MsG0280007847.01 | MsG0780039848.01 | 0.857372 | 1.707677e-62 | 4.205400e-59 |
| MsG0280008118.01 | MsG0780039848.01 | 0.829069 | 6.327421e-55 | 6.405584e-52 |
| MsG0280009141.01 | MsG0780039848.01 | 0.805042 | 1.616030e-49 | 8.462971e-47 |
| MsG0280009375.01 | MsG0780039848.01 | 0.807853 | 4.125279e-50 | 2.322601e-47 |
| MsG0280009575.01 | MsG0780039848.01 | 0.843156 | 1.666150e-58 | 2.583453e-55 |
| MsG0680035877.01 | MsG0780039848.01 | 0.822526 | 2.259674e-53 | 1.896181e-50 |
| MsG0680035888.01 | MsG0780039848.01 | 0.811046 | 8.514355e-51 | 5.216412e-48 |
| MsG0780036240.01 | MsG0780039848.01 | 0.805963 | 1.035623e-49 | 5.553532e-47 |
| MsG0780036546.01 | MsG0780039848.01 | 0.817579 | 3.064980e-52 | 2.240658e-49 |
| MsG0780036547.01 | MsG0780039848.01 | 0.863444 | 2.478669e-64 | 7.514771e-61 |
| MsG0780038400.01 | MsG0780039848.01 | 0.875256 | 3.556625e-68 | 1.649819e-64 |
| MsG0780038587.01 | MsG0780039848.01 | 0.839041 | 2.008029e-57 | 2.739359e-54 |
| MsG0780039643.01 | MsG0780039848.01 | 0.815384 | 9.504966e-52 | 6.543438e-49 |
| MsG0780039848.01 | MsG0780040070.01 | 0.825684 | 4.099617e-54 | 3.763076e-51 |
| MsG0780039848.01 | MsG0780040511.01 | 0.824262 | 8.880077e-54 | 7.825613e-51 |
| MsG0780039848.01 | MsG0780040569.01 | 0.831699 | 1.439729e-55 | 1.574606e-52 |
| MsG0780039848.01 | MsG0780041223.01 | 0.894924 | 1.560383e-75 | 1.583980e-71 |
| MsG0780039848.01 | MsG0780041224.01 | 0.802183 | 6.329852e-49 | 3.080517e-46 |
| MsG0780039848.01 | MsG0780041462.01 | 0.803592 | 3.239320e-49 | 1.634351e-46 |
| MsG0780039848.01 | MsG0880041967.01 | 0.847670 | 9.984769e-60 | 1.788008e-56 |
| MsG0780039848.01 | MsG0880042033.01 | 0.815929 | 7.185536e-52 | 5.020979e-49 |
| MsG0780039848.01 | MsG0880042131.01 | 0.818521 | 1.876971e-52 | 1.408237e-49 |
| MsG0780039848.01 | MsG0880042991.01 | 0.807956 | 3.922537e-50 | 2.214549e-47 |
| MsG0780039848.01 | MsG0880043770.01 | 0.831216 | 1.892473e-55 | 2.040143e-52 |
| MsG0780039848.01 | MsG0880045656.01 | 0.805487 | 1.303680e-49 | 6.905892e-47 |
| MsG0780039848.01 | MsG0880045684.01 | 0.807492 | 4.923001e-50 | 2.745916e-47 |
| MsG0780039848.01 | MsG0880046177.01 | 0.818360 | 2.041688e-52 | 1.525084e-49 |
| MsG0780039848.01 | MsG0880046575.01 | 0.801466 | 8.887850e-49 | 4.247381e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0780039848.01 | MsG0880047740.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780039848.01.T01 | MTR_7g080390 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 4.56e-93 | 265 |
| MsG0780039848.01.T01 | MTR_7g080760 | 52.066 | 121 | 48 | 3 | 10 | 129 | 7 | 118 | 1.64e-35 | 119 |
| MsG0780039848.01.T01 | MTR_4g133928 | 51.948 | 77 | 37 | 0 | 54 | 130 | 47 | 123 | 3.50e-21 | 82.8 |
| MsG0780039848.01.T01 | MTR_0446s0010 | 58.929 | 56 | 23 | 0 | 54 | 109 | 47 | 102 | 4.99e-16 | 68.9 |
| MsG0780039848.01.T01 | MTR_8g099920 | 41.772 | 79 | 44 | 2 | 53 | 130 | 61 | 138 | 4.55e-11 | 57.0 |
| MsG0780039848.01.T01 | MTR_8g099920 | 41.772 | 79 | 44 | 2 | 53 | 130 | 59 | 136 | 4.71e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780039848.01.T01 | AT1G65290 | 72.180 | 133 | 27 | 3 | 1 | 130 | 1 | 126 | 6.68e-60 | 181 |
| MsG0780039848.01.T01 | AT2G44620 | 53.488 | 129 | 52 | 4 | 1 | 129 | 1 | 121 | 6.30e-36 | 120 |
| MsG0780039848.01.T01 | AT5G47630 | 37.097 | 124 | 71 | 3 | 10 | 130 | 8 | 127 | 1.39e-19 | 79.0 |
| MsG0780039848.01.T01 | AT5G47630 | 37.097 | 124 | 71 | 3 | 10 | 130 | 8 | 127 | 1.39e-19 | 79.0 |
| MsG0780039848.01.T01 | AT5G47630 | 37.097 | 124 | 71 | 3 | 10 | 130 | 8 | 127 | 1.39e-19 | 79.0 |
Find 51 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTAGAAGGATCAACTTTC+TGG | 0.153197 | 7:+69706151 | None:intergenic |
| ATCTTGTCTGCTTCATTATC+AGG | 0.242778 | 7:+69704399 | None:intergenic |
| GAAACGACGAAGGAAGAAAT+TGG | 0.274656 | 7:+69706248 | None:intergenic |
| TATCCAATCCAAGGTCATTC+TGG | 0.280875 | 7:+69704478 | None:intergenic |
| TCCCCAGCCAAACACACTTT+TGG | 0.287162 | 7:+69704188 | None:intergenic |
| CCAGAAAGTTGATCCTTCTA+AGG | 0.310928 | 7:-69706151 | MsG0780039848.01.T01:intron |
| GTCGTTTCAGCGAAGAGGTT+AGG | 0.325470 | 7:-69706233 | MsG0780039848.01.T01:CDS |
| TGACCTTGGATTGGATAGTT+TGG | 0.330609 | 7:-69704472 | MsG0780039848.01.T01:CDS |
| ATGGCTCTTGAGGAAGAGTT+TGG | 0.348440 | 7:-69704432 | MsG0780039848.01.T01:CDS |
| TCGTTTCAGCGAAGAGGTTA+GGG | 0.350830 | 7:-69706232 | MsG0780039848.01.T01:CDS |
| CTAAATCCCAAAAGTGTGTT+TGG | 0.352275 | 7:-69704195 | MsG0780039848.01.T01:three_prime_UTR |
| AGGAATGAATATACCTTAGA+AGG | 0.366704 | 7:+69706138 | None:intergenic |
| ATGAATTCCACTACTTTGCC+TGG | 0.402676 | 7:+69704334 | None:intergenic |
| ATCCCAAAAGTGTGTTTGGC+TGG | 0.403903 | 7:-69704191 | MsG0780039848.01.T01:three_prime_UTR |
| TGGCTCTTGAGGAAGAGTTT+GGG | 0.415460 | 7:-69704431 | MsG0780039848.01.T01:CDS |
| AGTATTGGCATTTCATAACT+TGG | 0.421265 | 7:-69704133 | MsG0780039848.01.T01:three_prime_UTR |
| ACAATGGCGGCGAGAAGAAC+CGG | 0.449215 | 7:-69706348 | MsG0780039848.01.T01:CDS |
| TTTCCAGAATGACCTTGGAT+TGG | 0.459097 | 7:-69704481 | MsG0780039848.01.T01:CDS |
| GTAATTGATCAGAGGTAAAC+CGG | 0.480151 | 7:+69706329 | None:intergenic |
| TCCCAAAAGTGTGTTTGGCT+GGG | 0.488684 | 7:-69704190 | MsG0780039848.01.T01:three_prime_UTR |
| AAACGACGAAGGAAGAAATT+GGG | 0.492698 | 7:+69706249 | None:intergenic |
| GCTCATTTCCAGAATGACCT+TGG | 0.503501 | 7:-69704486 | MsG0780039848.01.T01:CDS |
| AAAGGCGATTGGTGGTTCAA+TGG | 0.507901 | 7:+69706282 | None:intergenic |
| TGAATTCCACTACTTTGCCT+GGG | 0.511311 | 7:+69704335 | None:intergenic |
| GTTCAATTTAAGCAAACAAG+TGG | 0.519121 | 7:+69704235 | None:intergenic |
| TCATTCTGGAAATGAGCACT+TGG | 0.522843 | 7:+69704492 | None:intergenic |
| CTTCATTGCATCTCATCCCC+AGG | 0.529562 | 7:-69704352 | MsG0780039848.01.T01:CDS |
| CCTTCGTCGTTTCAGCGAAG+AGG | 0.534191 | 7:-69706238 | MsG0780039848.01.T01:CDS |
| GAGAATCAACTTGCACTCTC+AGG | 0.548584 | 7:+69706307 | None:intergenic |
| AAGTAAAATACAACTCGAGC+TGG | 0.554852 | 7:+69704161 | None:intergenic |
| CATTCTGGAAATGAGCACTT+GGG | 0.569313 | 7:+69704493 | None:intergenic |
| GAAGAAGACGGAAAGGCGAT+TGG | 0.569472 | 7:+69706271 | None:intergenic |
| GAAGACGGAAAGGCGATTGG+TGG | 0.580452 | 7:+69706274 | None:intergenic |
| CTCATCCCCAGGCAAAGTAG+TGG | 0.584414 | 7:-69704341 | MsG0780039848.01.T01:exon |
| CCCAAAAGTGTGTTTGGCTG+GGG | 0.584451 | 7:-69704189 | MsG0780039848.01.T01:three_prime_UTR |
| AGCAGAGAGAGAGAAGAGTG+AGG | 0.586439 | 7:-69706385 | MsG0780039848.01.T01:five_prime_UTR |
| TATTCATTTCATTCATCGCG+TGG | 0.597536 | 7:-69706415 | MsG0780039848.01.T01:five_prime_UTR |
| AGAGATTGTGATGGCTCTTG+AGG | 0.598690 | 7:-69704442 | MsG0780039848.01.T01:CDS |
| CGTTTCAGCGAAGAGGTTAG+GGG | 0.604330 | 7:-69706231 | MsG0780039848.01.T01:CDS |
| GCGATGAATGAAATGAATAG+TGG | 0.615247 | 7:+69706419 | None:intergenic |
| GGATGCTGTAGAGATTGTGA+TGG | 0.619499 | 7:-69704451 | MsG0780039848.01.T01:CDS |
| GAATTCCACTACTTTGCCTG+GGG | 0.620707 | 7:+69704336 | None:intergenic |
| AAATTGGGAAGAAGACGGAA+AGG | 0.623328 | 7:+69706264 | None:intergenic |
| GGAAGAAATTGGGAAGAAGA+CGG | 0.626548 | 7:+69706259 | None:intergenic |
| CATCCAAACTATCCAATCCA+AGG | 0.636485 | 7:+69704469 | None:intergenic |
| TACGTTTCTCGACAAATCTG+AGG | 0.640218 | 7:-69706208 | MsG0780039848.01.T01:CDS |
| ATTCTGGAAATGAGCACTTG+GGG | 0.645151 | 7:+69704494 | None:intergenic |
| GCAAAGTAGTGGAATTCATG+AGG | 0.659430 | 7:-69704330 | MsG0780039848.01.T01:exon |
| CCTCTTCGCTGAAACGACGA+AGG | 0.663136 | 7:+69706238 | None:intergenic |
| TTTGATATCTACAACAATGG+CGG | 0.663710 | 7:-69706361 | MsG0780039848.01.T01:exon |
| ACTCTCAGGTAATTGATCAG+AGG | 0.675792 | 7:+69706321 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTATTTCCGATATT+AGG | - | Chr7:69704500-69704519 | MsG0780039848.01.T01:CDS | 15.0% |
| !! | AACTAAAACAATGTTATTAT+CGG | + | Chr7:69705260-69705279 | None:intergenic | 15.0% |
| !! | ATACAAAATATATAAATCCT+TGG | - | Chr7:69705101-69705120 | MsG0780039848.01.T01:intron | 15.0% |
| !! | TAAAAATGATATTTGAGAAT+TGG | + | Chr7:69705198-69705217 | None:intergenic | 15.0% |
| !!! | ATTGTTTTCATATAAGTTAT+AGG | - | Chr7:69704601-69704620 | MsG0780039848.01.T01:intron | 15.0% |
| !!! | ATTTTTATTGACATGAAAAA+TGG | + | Chr7:69706408-69706427 | None:intergenic | 15.0% |
| !!! | TATTTTACTTTTGTTAGTAT+TGG | - | Chr7:69706355-69706374 | MsG0780039848.01.T01:exon | 15.0% |
| !!! | TTGTTTTCATATAAGTTATA+GGG | - | Chr7:69704602-69704621 | MsG0780039848.01.T01:intron | 15.0% |
| !!! | TTTAACTTTATTTTACCTTT+TGG | + | Chr7:69704712-69704731 | None:intergenic | 15.0% |
| !! | AAAGAGAATTATACCATAAA+AGG | - | Chr7:69705368-69705387 | MsG0780039848.01.T01:intron | 20.0% |
| !! | AATCTTTCATCAATTAAGTA+GGG | - | Chr7:69705303-69705322 | MsG0780039848.01.T01:intron | 20.0% |
| !! | ATCGCAACAATAATATATTT+GGG | + | Chr7:69705503-69705522 | None:intergenic | 20.0% |
| !! | TGATGAATGAAACAATAATT+AGG | + | Chr7:69704421-69704440 | None:intergenic | 20.0% |
| !! | TTCACTTTATCTTTAGTTAT+AGG | + | Chr7:69704577-69704596 | None:intergenic | 20.0% |
| !!! | AACATTGTTTTAGTTATATG+AGG | - | Chr7:69705265-69705284 | MsG0780039848.01.T01:intron | 20.0% |
| !!! | GCTATTTTTATAAGCTATAT+TGG | - | Chr7:69704753-69704772 | MsG0780039848.01.T01:intron | 20.0% |
| !!! | TAAAGCTAGATTATTTCTTA+AGG | + | Chr7:69704907-69704926 | None:intergenic | 20.0% |
| !!! | TATGGTATAATTCTCTTTTA+TGG | + | Chr7:69705366-69705385 | None:intergenic | 20.0% |
| !!! | TATTTTGTATTGCATTTTAG+TGG | + | Chr7:69705091-69705110 | None:intergenic | 20.0% |
| ! | AAAGTAGCTTATGAAATGTT+TGG | + | Chr7:69704880-69704899 | None:intergenic | 25.0% |
| ! | AAGTGATTACTTCATTTAAG+AGG | - | Chr7:69705556-69705575 | MsG0780039848.01.T01:intron | 25.0% |
| ! | ATATAAACTGTGAGACTAAT+TGG | + | Chr7:69705788-69705807 | None:intergenic | 25.0% |
| ! | ATATAAATCCTTGGATTGAT+TGG | - | Chr7:69705110-69705129 | MsG0780039848.01.T01:intron | 25.0% |
| ! | ATATAAGAATTGCTCATTGA+TGG | + | Chr7:69705055-69705074 | None:intergenic | 25.0% |
| ! | ATCCAAACATTACCTAATAT+CGG | + | Chr7:69704515-69704534 | None:intergenic | 25.0% |
| ! | ATTAACGTGATGTTATTGTT+AGG | - | Chr7:69704440-69704459 | MsG0780039848.01.T01:CDS | 25.0% |
| ! | CAATTCTTATATGAAGCTTA+AGG | - | Chr7:69705063-69705082 | MsG0780039848.01.T01:intron | 25.0% |
| ! | CATCGCAACAATAATATATT+TGG | + | Chr7:69705504-69705523 | None:intergenic | 25.0% |
| ! | GAAACGAATGATAATAATAG+AGG | + | Chr7:69704388-69704407 | None:intergenic | 25.0% |
| ! | GAATCTTTCATCAATTAAGT+AGG | - | Chr7:69705302-69705321 | MsG0780039848.01.T01:intron | 25.0% |
| ! | TAAGCTACTTATATACCAAA+AGG | - | Chr7:69704694-69704713 | MsG0780039848.01.T01:intron | 25.0% |
| ! | TATAAACTGTGAGACTAATT+GGG | + | Chr7:69705787-69705806 | None:intergenic | 25.0% |
| !!! | TAACTTGTTTGAAAACAGTT+TGG | + | Chr7:69705678-69705697 | None:intergenic | 25.0% |
| !!! | TTTGAAGTGTGTTTTCATTT+TGG | - | Chr7:69705886-69705905 | MsG0780039848.01.T01:intron | 25.0% |
| AAAGCTGGTAGCAATATTAA+AGG | + | Chr7:69705026-69705045 | None:intergenic | 30.0% | |
| AAGAAGTTAGAAACAGCTTA+TGG | - | Chr7:69705733-69705752 | MsG0780039848.01.T01:intron | 30.0% | |
| ACAAATAAACCATCCAAACA+GGG | - | Chr7:69705816-69705835 | MsG0780039848.01.T01:intron | 30.0% | |
| ACTGGTTAAGGATATGTAAA+AGG | + | Chr7:69705455-69705474 | None:intergenic | 30.0% | |
| ACTTCAAACAGTAAAGTGTA+AGG | + | Chr7:69705874-69705893 | None:intergenic | 30.0% | |
| AGGAATGAATATACCTTAGA+AGG | + | Chr7:69704368-69704387 | None:intergenic | 30.0% | |
| ATAACAAACCAATCAATCCA+AGG | + | Chr7:69705121-69705140 | None:intergenic | 30.0% | |
| CATCTACTCATGTAAGTATT+CGG | + | Chr7:69704972-69704991 | None:intergenic | 30.0% | |
| CTTATACTCTCTTGTTAACA+TGG | - | Chr7:69705956-69705975 | MsG0780039848.01.T01:intron | 30.0% | |
| GAATTGGTGTAATTCTTACA+TGG | + | Chr7:69705182-69705201 | None:intergenic | 30.0% | |
| GTTCAATTTAAGCAAACAAG+TGG | + | Chr7:69706271-69706290 | None:intergenic | 30.0% | |
| TACAAATAAACCATCCAAAC+AGG | - | Chr7:69705815-69705834 | MsG0780039848.01.T01:intron | 30.0% | |
| TATATTTGGGAAATGCTAAC+CGG | + | Chr7:69705490-69705509 | None:intergenic | 30.0% | |
| TTAGGTAATGTTTGGATCAA+CGG | - | Chr7:69704518-69704537 | MsG0780039848.01.T01:intron | 30.0% | |
| TTCCGATATTAGGTAATGTT+TGG | - | Chr7:69704510-69704529 | MsG0780039848.01.T01:intron | 30.0% | |
| TTTGATATCTACAACAATGG+CGG | - | Chr7:69704142-69704161 | MsG0780039848.01.T01:three_prime_UTR | 30.0% | |
| ! | GTCAAAACAGTTTCCTTTTA+TGG | + | Chr7:69705384-69705403 | None:intergenic | 30.0% |
| !! | AGTATTGGCATTTCATAACT+TGG | - | Chr7:69706370-69706389 | MsG0780039848.01.T01:five_prime_UTR | 30.0% |
| !! | GATTGATTGGTTTGTTATGT+TGG | - | Chr7:69705123-69705142 | MsG0780039848.01.T01:intron | 30.0% |
| !! | GGTTTTGATATCTACAACAA+TGG | - | Chr7:69704139-69704158 | MsG0780039848.01.T01:three_prime_UTR | 30.0% |
| AAACGACGAAGGAAGAAATT+GGG | + | Chr7:69704257-69704276 | None:intergenic | 35.0% | |
| AAGTAAAATACAACTCGAGC+TGG | + | Chr7:69706345-69706364 | None:intergenic | 35.0% | |
| AGCAAAAAATGTCTTAGCGT+TGG | + | Chr7:69706248-69706267 | None:intergenic | 35.0% | |
| AGCTTATGAAATGTTTGGCT+TGG | + | Chr7:69704875-69704894 | None:intergenic | 35.0% | |
| ATCTTGTCTGCTTCATTATC+AGG | + | Chr7:69706107-69706126 | None:intergenic | 35.0% | |
| CTGGTAGCAATATTAAAGGA+AGG | + | Chr7:69705022-69705041 | None:intergenic | 35.0% | |
| GATGAAATTATCACTGCCAA+GGG | - | Chr7:69705520-69705539 | MsG0780039848.01.T01:intron | 35.0% | |
| GCGATGAATGAAATGAATAG+TGG | + | Chr7:69704087-69704106 | None:intergenic | 35.0% | |
| GTAATTGATCAGAGGTAAAC+CGG | + | Chr7:69704177-69704196 | None:intergenic | 35.0% | |
| TAAGTATTCGGACATTGTTC+AGG | + | Chr7:69704960-69704979 | None:intergenic | 35.0% | |
| TATAAGTTATAGGGCGTGTT+TGG | - | Chr7:69704611-69704630 | MsG0780039848.01.T01:intron | 35.0% | |
| TATTCATTTCATTCATCGCG+TGG | - | Chr7:69704088-69704107 | MsG0780039848.01.T01:three_prime_UTR | 35.0% | |
| TGTGCTTCTTTCCATTTATC+AGG | - | Chr7:69705983-69706002 | MsG0780039848.01.T01:intron | 35.0% | |
| ! | CTAAATCCCAAAAGTGTGTT+TGG | - | Chr7:69706308-69706327 | MsG0780039848.01.T01:CDS | 35.0% |
| ! | TGATAAATGGAAAGAAGCAC+AGG | + | Chr7:69705984-69706003 | None:intergenic | 35.0% |
| !!! | ACACACTTTTGGGATTTAGA+AGG | + | Chr7:69706307-69706326 | None:intergenic | 35.0% |
| !!! | CACACTTTTGGGATTTAGAA+GGG | + | Chr7:69706306-69706325 | None:intergenic | 35.0% |
| AAATTGGGAAGAAGACGGAA+AGG | + | Chr7:69704242-69704261 | None:intergenic | 40.0% | |
| AACTTCTTCCTATGCTCTCT+AGG | + | Chr7:69705721-69705740 | None:intergenic | 40.0% | |
| ACATTGTTCAGGAGAGCTTA+TGG | + | Chr7:69704949-69704968 | None:intergenic | 40.0% | |
| ACTCTCAGGTAATTGATCAG+AGG | + | Chr7:69704185-69704204 | None:intergenic | 40.0% | |
| ACTTGGGGTAACCTGATAAA+TGG | + | Chr7:69705997-69706016 | None:intergenic | 40.0% | |
| AGCTTATCTACGAGACTCTT+GGG | + | Chr7:69704844-69704863 | None:intergenic | 40.0% | |
| AGTACACAATTGCTTGCAGA+GGG | + | Chr7:69705923-69705942 | None:intergenic | 40.0% | |
| ATGAATTCCACTACTTTGCC+TGG | + | Chr7:69706172-69706191 | None:intergenic | 40.0% | |
| CATCCAAACTATCCAATCCA+AGG | + | Chr7:69706037-69706056 | None:intergenic | 40.0% | |
| CCTTAGAAGGATCAACTTTC+TGG | + | Chr7:69704355-69704374 | None:intergenic | 40.0% | |
| CGATGAAATTATCACTGCCA+AGG | - | Chr7:69705519-69705538 | MsG0780039848.01.T01:intron | 40.0% | |
| CTTAAGAGAGATCAAACCCT+TGG | + | Chr7:69705539-69705558 | None:intergenic | 40.0% | |
| GAAACGACGAAGGAAGAAAT+TGG | + | Chr7:69704258-69704277 | None:intergenic | 40.0% | |
| GGAAGAAATTGGGAAGAAGA+CGG | + | Chr7:69704247-69704266 | None:intergenic | 40.0% | |
| GTTTACACTATAGCCCTGTT+TGG | + | Chr7:69705832-69705851 | None:intergenic | 40.0% | |
| TACGTTTCTCGACAAATCTG+AGG | - | Chr7:69704295-69704314 | MsG0780039848.01.T01:three_prime_UTR | 40.0% | |
| TAGTACACAATTGCTTGCAG+AGG | + | Chr7:69705924-69705943 | None:intergenic | 40.0% | |
| TATCCAATCCAAGGTCATTC+TGG | + | Chr7:69706028-69706047 | None:intergenic | 40.0% | |
| TGAATTCCACTACTTTGCCT+GGG | + | Chr7:69706171-69706190 | None:intergenic | 40.0% | |
| TTTCCAGAATGACCTTGGAT+TGG | - | Chr7:69706022-69706041 | MsG0780039848.01.T01:intron | 40.0% | |
| ! | ATTCTGGAAATGAGCACTTG+GGG | + | Chr7:69706012-69706031 | None:intergenic | 40.0% |
| ! | CATTCTGGAAATGAGCACTT+GGG | + | Chr7:69706013-69706032 | None:intergenic | 40.0% |
| ! | CCAGAAAGTTGATCCTTCTA+AGG | - | Chr7:69704352-69704371 | MsG0780039848.01.T01:CDS | 40.0% |
| ! | GCAAAGTAGTGGAATTCATG+AGG | - | Chr7:69706173-69706192 | MsG0780039848.01.T01:CDS | 40.0% |
| ! | TAAGCTATCCTAGAGAGCAT+AGG | - | Chr7:69705710-69705729 | MsG0780039848.01.T01:intron | 40.0% |
| ! | TCATTCTGGAAATGAGCACT+TGG | + | Chr7:69706014-69706033 | None:intergenic | 40.0% |
| ! | TGACCTTGGATTGGATAGTT+TGG | - | Chr7:69706031-69706050 | MsG0780039848.01.T01:intron | 40.0% |
| !! | TCTAGCTTTAGACGTGTCAT+TGG | - | Chr7:69704917-69704936 | MsG0780039848.01.T01:intron | 40.0% |
| ACACTATAGCCCTGTTTGGA+TGG | + | Chr7:69705828-69705847 | None:intergenic | 45.0% | |
| ACTGTGAGACTAATTGGGAG+AGG | + | Chr7:69705782-69705801 | None:intergenic | 45.0% | |
| AGAGATTGTGATGGCTCTTG+AGG | - | Chr7:69706061-69706080 | MsG0780039848.01.T01:intron | 45.0% | |
| ATGGCTCTTGAGGAAGAGTT+TGG | - | Chr7:69706071-69706090 | MsG0780039848.01.T01:intron | 45.0% | |
| GAATTCCACTACTTTGCCTG+GGG | + | Chr7:69706170-69706189 | None:intergenic | 45.0% | |
| GAGAATCAACTTGCACTCTC+AGG | + | Chr7:69704199-69704218 | None:intergenic | 45.0% | |
| GAGCTTATCTACGAGACTCT+TGG | + | Chr7:69704845-69704864 | None:intergenic | 45.0% | |
| GCTCATTTCCAGAATGACCT+TGG | - | Chr7:69706017-69706036 | MsG0780039848.01.T01:intron | 45.0% | |
| GGATGCTGTAGAGATTGTGA+TGG | - | Chr7:69706052-69706071 | MsG0780039848.01.T01:intron | 45.0% | |
| TCGTTTCAGCGAAGAGGTTA+GGG | - | Chr7:69704271-69704290 | MsG0780039848.01.T01:three_prime_UTR | 45.0% | |
| TGGCTCTTGAGGAAGAGTTT+GGG | - | Chr7:69706072-69706091 | MsG0780039848.01.T01:intron | 45.0% | |
| ! | AAAGGCGATTGGTGGTTCAA+TGG | + | Chr7:69704224-69704243 | None:intergenic | 45.0% |
| ! | ATCCCAAAAGTGTGTTTGGC+TGG | - | Chr7:69706312-69706331 | MsG0780039848.01.T01:CDS | 45.0% |
| ! | TCCCAAAAGTGTGTTTGGCT+GGG | - | Chr7:69706313-69706332 | MsG0780039848.01.T01:CDS | 45.0% |
| !!! | TTTTGGGATTTAGAAGGGCG+AGG | + | Chr7:69706301-69706320 | None:intergenic | 45.0% |
| AGCAGAGAGAGAGAAGAGTG+AGG | - | Chr7:69704118-69704137 | MsG0780039848.01.T01:three_prime_UTR | 50.0% | |
| ATATCCTTAACCAGTGCCCC+GGG | - | Chr7:69705460-69705479 | MsG0780039848.01.T01:intron | 50.0% | |
| CATATCCTTAACCAGTGCCC+CGG | - | Chr7:69705459-69705478 | MsG0780039848.01.T01:intron | 50.0% | |
| CGTTTCAGCGAAGAGGTTAG+GGG | - | Chr7:69704272-69704291 | MsG0780039848.01.T01:three_prime_UTR | 50.0% | |
| CTTCATTGCATCTCATCCCC+AGG | - | Chr7:69706151-69706170 | MsG0780039848.01.T01:intron | 50.0% | |
| GAAGAAGACGGAAAGGCGAT+TGG | + | Chr7:69704235-69704254 | None:intergenic | 50.0% | |
| GTCGTTTCAGCGAAGAGGTT+AGG | - | Chr7:69704270-69704289 | MsG0780039848.01.T01:three_prime_UTR | 50.0% | |
| ! | CCCAAAAGTGTGTTTGGCTG+GGG | - | Chr7:69706314-69706333 | MsG0780039848.01.T01:CDS | 50.0% |
| ! | CCCCAGCCAAACACACTTTT+GGG | + | Chr7:69706317-69706336 | None:intergenic | 50.0% |
| ! | TCCCCAGCCAAACACACTTT+TGG | + | Chr7:69706318-69706337 | None:intergenic | 50.0% |
| !! | CATTGATGGCGTCGTAAAGC+TGG | + | Chr7:69705041-69705060 | None:intergenic | 50.0% |
| ACAATGGCGGCGAGAAGAAC+CGG | - | Chr7:69704155-69704174 | MsG0780039848.01.T01:three_prime_UTR | 55.0% | |
| CCTCTTCGCTGAAACGACGA+AGG | + | Chr7:69704268-69704287 | None:intergenic | 55.0% | |
| CCTTCGTCGTTTCAGCGAAG+AGG | - | Chr7:69704265-69704284 | MsG0780039848.01.T01:three_prime_UTR | 55.0% | |
| CTCATCCCCAGGCAAAGTAG+TGG | - | Chr7:69706162-69706181 | MsG0780039848.01.T01:CDS | 55.0% | |
| GAAGACGGAAAGGCGATTGG+TGG | + | Chr7:69704232-69704251 | None:intergenic | 55.0% | |
| TATCCTTAACCAGTGCCCCG+GGG | - | Chr7:69705461-69705480 | MsG0780039848.01.T01:intron | 55.0% | |
| TGGTATGCTAACCAGTGCCC+CGG | + | Chr7:69705346-69705365 | None:intergenic | 55.0% | |
| AAATGCTAACCGGTGCCCCC+GGG | + | Chr7:69705480-69705499 | None:intergenic | 60.0% | |
| ATCCTTAACCAGTGCCCCGG+GGG | - | Chr7:69705462-69705481 | MsG0780039848.01.T01:intron | 60.0% | |
| GAAATGCTAACCGGTGCCCC+CGG | + | Chr7:69705481-69705500 | None:intergenic | 60.0% | |
| GGTATGCTAACCAGTGCCCC+GGG | + | Chr7:69705345-69705364 | None:intergenic | 60.0% | |
| GTATGCTAACCAGTGCCCCG+GGG | + | Chr7:69705344-69705363 | None:intergenic | 60.0% | |
| TATGCTAACCAGTGCCCCGG+GGG | + | Chr7:69705343-69705362 | None:intergenic | 60.0% | |
| AATGCTAACCGGTGCCCCCG+GGG | + | Chr7:69705479-69705498 | None:intergenic | 65.0% | |
| GGTCCTGCTAACTGTGCCCC+CGG | - | Chr7:69705324-69705343 | MsG0780039848.01.T01:intron | 65.0% | |
| GTCCTGCTAACTGTGCCCCC+GGG | - | Chr7:69705325-69705344 | MsG0780039848.01.T01:intron | 65.0% | |
| TCCTGCTAACTGTGCCCCCG+GGG | - | Chr7:69705326-69705345 | MsG0780039848.01.T01:intron | 65.0% | |
| TAACTGTGCCCCCGGGGCAC+TGG | - | Chr7:69705332-69705351 | MsG0780039848.01.T01:intron | 70.0% | |
| !! | TGCCCCCGGGGCACTGGTTA+AGG | + | Chr7:69705357-69705338 | None:intergenic | 70.0% |
| ! | AACCAGTGCCCCGGGGGCAC+CGG | - | Chr7:69705468-69705487 | MsG0780039848.01.T01:intron | 75.0% |
| ! | GCCCCGGGGGCACAGTTAGC+AGG | + | Chr7:69705330-69705349 | None:intergenic | 75.0% |
| ! | AACCGGTGCCCCCGGGGCAC+TGG | + | Chr7:69705473-69705492 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 69704083 | 69706442 | 69704083 | ID=MsG0780039848.01;Name=MsG0780039848.01 |
| Chr7 | mRNA | 69704083 | 69706442 | 69704083 | ID=MsG0780039848.01.T01;Parent=MsG0780039848.01;Name=MsG0780039848.01.T01;_AED=0.45;_eAED=0.45;_QI=75|1|1|1|1|1|2|261|130 |
| Chr7 | exon | 69704083 | 69704520 | 69704083 | ID=MsG0780039848.01.T01:exon:12742;Parent=MsG0780039848.01.T01 |
| Chr7 | exon | 69706152 | 69706442 | 69706152 | ID=MsG0780039848.01.T01:exon:12741;Parent=MsG0780039848.01.T01 |
| Chr7 | five_prime_UTR | 69706368 | 69706442 | 69706368 | ID=MsG0780039848.01.T01:five_prime_utr;Parent=MsG0780039848.01.T01 |
| Chr7 | CDS | 69706152 | 69706367 | 69706152 | ID=MsG0780039848.01.T01:cds;Parent=MsG0780039848.01.T01 |
| Chr7 | CDS | 69704344 | 69704520 | 69704344 | ID=MsG0780039848.01.T01:cds;Parent=MsG0780039848.01.T01 |
| Chr7 | three_prime_UTR | 69704083 | 69704343 | 69704083 | ID=MsG0780039848.01.T01:three_prime_utr;Parent=MsG0780039848.01.T01 |
| Gene Sequence |
| Protein sequence |
