AlfalfaGEDB | MsG0280007211.01

M. sativa cultivar ZhongmuNo.1 / MsG0280007211.01

KEGG: K19043
GO: -
PFAM: PF13639

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007211.01.T01	XP_013462769.1	98.688	381	5	0	1	381	1	381	0	768

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007211.01.T01	Q4TU14	44.134	358	141	10	30	358	38	365	3.21E-72	233

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007211.01.T01	A0A072V4R5	98.688	381	5	0	1	381	1	381	0.0	768

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048878.01	MsG0280007211.01	-0.816680	4.882288e-52	3.482330e-49
MsG0080049069.01	MsG0280007211.01	-0.812842	3.458590e-51	2.222397e-48
MsG0180000010.01	MsG0280007211.01	0.800540	1.373984e-48	6.414035e-46
MsG0180000113.01	MsG0280007211.01	-0.800653	1.302776e-48	6.099357e-46
MsG0180003697.01	MsG0280007211.01	-0.837395	5.332702e-57	6.917277e-54
MsG0180003767.01	MsG0280007211.01	0.809778	1.599303e-50	9.475590e-48
MsG0180003942.01	MsG0280007211.01	0.806526	7.881657e-50	4.287508e-47
MsG0180004750.01	MsG0280007211.01	-0.808767	2.634083e-50	1.519048e-47
MsG0180005303.01	MsG0280007211.01	0.806156	9.433141e-50	5.083421e-47
MsG0280006306.01	MsG0280007211.01	0.817759	2.791310e-52	2.050802e-49

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007211.01.T01	MTR_2g022680	98.688	381	5	0	1	381	1	381	0.0	768
MsG0280007211.01.T01	MTR_2g022680	98.660	373	5	0	1	373	1	373	0.0	751
MsG0280007211.01.T01	MTR_2g022680	98.480	329	5	0	53	381	8	336	0.0	669
MsG0280007211.01.T01	MTR_2g087820	39.444	360	168	12	32	352	31	379	3.87e-59	196
MsG0280007211.01.T01	MTR_2g087820	39.335	361	168	13	32	352	31	380	2.94e-57	191
MsG0280007211.01.T01	MTR_7g106770	36.071	280	130	9	32	286	28	283	1.95e-41	147
MsG0280007211.01.T01	MTR_8g030510	54.167	48	22	0	35	82	137	184	2.22e-12	65.9
MsG0280007211.01.T01	MTR_8g098665	47.170	53	28	0	35	87	153	205	9.98e-12	64.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007211.01.T01	AT4G14220	44.134	358	141	10	30	358	38	365	3.28e-73	233
MsG0280007211.01.T01	AT5G22000	41.368	307	139	8	32	309	27	321	3.29e-60	199
MsG0280007211.01.T01	AT5G22000	41.368	307	139	8	32	309	27	321	3.74e-60	199
MsG0280007211.01.T01	AT5G22000	41.368	307	139	8	32	309	27	321	3.74e-60	199
MsG0280007211.01.T01	AT5G22000	36.260	262	126	8	77	309	1	250	3.84e-32	123
MsG0280007211.01.T01	AT4G00335	47.273	55	29	0	32	86	133	187	1.02e-11	63.9
MsG0280007211.01.T01	AT4G00335	47.273	55	29	0	32	86	133	187	1.02e-11	63.9
MsG0280007211.01.T01	AT4G00335	47.273	55	29	0	32	86	133	187	1.02e-11	63.9
MsG0280007211.01.T01	AT5G41350	45.833	48	26	0	35	82	158	205	8.71e-11	61.6
MsG0280007211.01.T01	AT5G41350	45.833	48	26	0	35	82	158	205	8.71e-11	61.6

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Find 123 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGAGCTCTACTTGCAG+CGG	0.654386	2:+11976218	None:intergenic
AAAGTGATTGCCAACATATT+GGG	0.393517	2:+11976649	None:intergenic
AAATAAACATATACCAGGCA+GGG	0.612594	2:+11976616	None:intergenic
AAATCCAGTAATTGACATGT+AGG	0.509851	2:+11974206	None:intergenic
AAATTTAGATTTGAAGGACT+CGG	0.485514	2:+11975479	None:intergenic
AACTCTTCTGGGCCTGTATC+TGG	0.093435	2:-11976135	MsG0280007211.01.T01:CDS
AACTGCCAACGCTCGTCCTG+AGG	0.563873	2:-11976049	MsG0280007211.01.T01:CDS
AAGAGTGCTAGAAATGTGTG+AGG	0.670510	2:+11975072	None:intergenic
AAGATGAAACATACAGTTGA+TGG	0.451081	2:+11977875	None:intergenic
AAGTAGCCATGGTTAGGGTT+AGG	0.500621	2:+11978035	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTGATTGCCAACATATT+GGG	+	Chr2:11975512-11975531	None:intergenic	30.0%
AAATAAACATATACCAGGCA+GGG	+	Chr2:11975545-11975564	None:intergenic	30.0%
AAATCCAGTAATTGACATGT+AGG	+	Chr2:11977955-11977974	None:intergenic	30.0%
AACTCAAACCACAAAAATCA+AGG	+	Chr2:11974540-11974559	None:intergenic	30.0%
AAGATGAAACATACAGTTGA+TGG	+	Chr2:11974286-11974305	None:intergenic	30.0%
AATACATTCATCACTTCGAA+AGG	+	Chr2:11977644-11977663	None:intergenic	30.0%
AATCCAGTAATTGACATGTA+GGG	+	Chr2:11977954-11977973	None:intergenic	30.0%
AATTTAGATTTGAAGGACTC+GGG	+	Chr2:11976681-11976700	None:intergenic	30.0%
ACATGATTTGAATTCCTTCA+TGG	+	Chr2:11977433-11977452	None:intergenic	30.0%
ACTAAAACAGTACCTGAAAT+TGG	+	Chr2:11978071-11978090	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	11974028	11978152	11974028	ID=MsG0280007211.01;Name=MsG0280007211.01
Chr2	mRNA	11974028	11978152	11974028	ID=MsG0280007211.01.T01;Parent=MsG0280007211.01;Name=MsG0280007211.01.T01;_AED=0.31;_eAED=0.31;_QI=108\|1\|1\|1\|0.85\|0.87\|8\|391\|381
Chr2	exon	11974028	11974445	11974028	ID=MsG0280007211.01.T01:exon:2796;Parent=MsG0280007211.01.T01
Chr2	exon	11975039	11975378	11975039	ID=MsG0280007211.01.T01:exon:2795;Parent=MsG0280007211.01.T01
Chr2	exon	11975462	11975569	11975462	ID=MsG0280007211.01.T01:exon:2794;Parent=MsG0280007211.01.T01
Chr2	exon	11976003	11976295	11976003	ID=MsG0280007211.01.T01:exon:2793;Parent=MsG0280007211.01.T01
Chr2	exon	11976419	11976530	11976419	ID=MsG0280007211.01.T01:exon:2792;Parent=MsG0280007211.01.T01
Chr2	exon	11976630	11976692	11976630	ID=MsG0280007211.01.T01:exon:2791;Parent=MsG0280007211.01.T01
Chr2	exon	11976772	11976818	11976772	ID=MsG0280007211.01.T01:exon:2790;Parent=MsG0280007211.01.T01
Chr2	exon	11977889	11978152	11977889	ID=MsG0280007211.01.T01:exon:2789;Parent=MsG0280007211.01.T01
Chr2	five_prime_UTR	11978045	11978152	11978045	ID=MsG0280007211.01.T01:five_prime_utr;Parent=MsG0280007211.01.T01
Chr2	CDS	11977889	11978044	11977889	ID=MsG0280007211.01.T01:cds;Parent=MsG0280007211.01.T01
Chr2	CDS	11976772	11976818	11976772	ID=MsG0280007211.01.T01:cds;Parent=MsG0280007211.01.T01
Chr2	CDS	11976630	11976692	11976630	ID=MsG0280007211.01.T01:cds;Parent=MsG0280007211.01.T01
Chr2	CDS	11976419	11976530	11976419	ID=MsG0280007211.01.T01:cds;Parent=MsG0280007211.01.T01
Chr2	CDS	11976003	11976295	11976003	ID=MsG0280007211.01.T01:cds;Parent=MsG0280007211.01.T01
Chr2	CDS	11975462	11975569	11975462	ID=MsG0280007211.01.T01:cds;Parent=MsG0280007211.01.T01
Chr2	CDS	11975039	11975378	11975039	ID=MsG0280007211.01.T01:cds;Parent=MsG0280007211.01.T01
Chr2	CDS	11974419	11974445	11974419	ID=MsG0280007211.01.T01:cds;Parent=MsG0280007211.01.T01
Chr2	three_prime_UTR	11974028	11974418	11974028	ID=MsG0280007211.01.T01:three_prime_utr;Parent=MsG0280007211.01.T01

Gene Sequence

>MsG0280007211.01.T01

ATGGCTACTTTCACCTCCTTCTCTTCTCCATCATCATCATCTTCCACTCCTCCTCCTTTCTCAGCTCCATCCTCTTCTTCAGCTTTTGATGATGACTCTTTTGAAGATTCTTGCAGTATTTGCTTAGAGTCTTTCAGTGTTCATGACCCATCAACTGTTACTTGTTGCAAACATGAATATCACCTGCATTGCATTCTTGAATGGTCACAGAGAAGCAAAGAGTGCCCAATATGTTGGCAATCACTTTCTTTGAAAGACCCTGCCTGCCAAGAGCTTCTTGACGCTGTGGAGGCTGAGAAAAGCGTAAGATCAAGAAACAATCATTCATCTTCACTCACTAATTCTCGGGTCCCCTTTGGATATTCTAATGGTGATCATGATGATTCCTCAGATGAAATTGATTTTGATGAGGAAATTATGCAGCACCTATATGCCGCTGCAAGTAGAGCTCGTTTTGTTCAGAGACAGAGAAGACAGGGATCGTCTGGAGCAGGTCCATCAGAGATTCTTGTTTTCAACTCTTCTGGGCCTGTATCTGGGATGCAATCAACACTTACAACTTCACCAGTTGGCGGTAGCTCACCGACCACTGATCTACCATCAACTGCCAACGCTCGTCCTGAGGTTGCAAGAAACACTAGTCCTGAGGTTGATGTCCCTTACAGGCCAAGAGTTCTTTACAGTCCATCACCACCTCAGGACGAGAGGAAACTAAATACTTCTGAGATGTTCTCCTTTCCCGAGTCCTTCAAATCTAAATTTTCTGCTGCTTCAGCTAGATATAAGGAATCAATTTCTAAAAGTACTCGTGGCCTTAAAGAGAAGTTACTGGCTCGTAATGTCACAGTAAAAGAGCTGAGTAAAGGTGTTCAACGTGAGATGAATGCTGGCATAGCTGGAGTTTCACGTATGATTGAACGCCTTGATCTTGCCTCAAAAAGGTCGGGTTCTCCTCTAATTCCTGTCCGTAATGGGGGAACTTCAGGCTTTTCCGAAGGGAAGTCTGTTGAAGAGAAAGACACTGGGAATTCTAAAACTGAAGCAAGTGGAAGTTCAGATGCCCCCTCACACATTTCTAGCACTCTTGCTAGTCGAATGGAAATTCCTCCATATGTTCAGAGAGGACATGATGCTGTGAAGACTTAG

Protein sequence

>MsG0280007211.01.T01

MATFTSFSSPSSSSSTPPPFSAPSSSSAFDDDSFEDSCSICLESFSVHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLSLKDPACQELLDAVEAEKSVRSRNNHSSSLTNSRVPFGYSNGDHDDSSDEIDFDEEIMQHLYAAASRARFVQRQRRQGSSGAGPSEILVFNSSGPVSGMQSTLTTSPVGGSSPTTDLPSTANARPEVARNTSPEVDVPYRPRVLYSPSPPQDERKLNTSEMFSFPESFKSKFSAASARYKESISKSTRGLKEKLLARNVTVKELSKGVQREMNAGIAGVSRMIERLDLASKRSGSPLIPVRNGGTSGFSEGKSVEEKDTGNSKTEASGSSDAPSHISSTLASRMEIPPYVQRGHDAVKT*