AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029511.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029511.01.T01 MTR_5g087710 96.915 389 12 0 1 389 3 391 0.0 771
MsG0580029511.01.T01 MTR_3g079180 75.325 385 94 1 6 389 2 386 0.0 614
MsG0580029511.01.T01 MTR_3g099460 61.905 378 140 3 14 388 14 390 1.09e-164 467
MsG0580029511.01.T01 MTR_3g099460 60.847 378 137 4 14 388 14 383 4.51e-158 450
MsG0580029511.01.T01 MTR_3g079170 76.753 271 49 1 109 379 26 282 4.74e-153 433
MsG0580029511.01.T01 MTR_3g099460 61.920 323 121 2 67 388 6 327 3.76e-137 395
MsG0580029511.01.T01 MTR_1g069430 51.070 374 181 2 14 387 6 377 3.93e-134 389
MsG0580029511.01.T01 MTR_6g068930 50.000 382 185 4 8 389 2 377 1.97e-129 377
MsG0580029511.01.T01 MTR_7g099040 49.206 378 190 2 8 385 2 377 6.95e-128 373
MsG0580029511.01.T01 MTR_3g089940 45.407 381 206 2 9 389 2 380 6.35e-123 360
MsG0580029511.01.T01 MTR_3g089940 45.479 376 203 2 14 389 7 380 4.97e-122 358
MsG0580029511.01.T01 MTR_3g089977 45.722 374 201 2 14 387 7 378 8.47e-122 357
MsG0580029511.01.T01 MTR_3g089970 45.479 376 203 2 14 389 8 381 4.94e-121 355
MsG0580029511.01.T01 MTR_7g068330 47.927 386 193 5 8 387 2 385 5.87e-119 350
MsG0580029511.01.T01 MTR_3g099460 62.238 286 105 2 14 296 14 299 1.18e-117 345
MsG0580029511.01.T01 MTR_7g068320 47.884 378 191 5 14 387 18 393 1.87e-116 344
MsG0580029511.01.T01 MTR_3g099460 60.839 286 102 3 14 296 14 292 3.76e-111 328
MsG0580029511.01.T01 MTR_3g089940 44.868 341 186 2 9 349 2 340 3.21e-105 314
MsG0580029511.01.T01 MTR_5g045710 44.211 380 203 7 10 387 2 374 1.35e-104 313
MsG0580029511.01.T01 MTR_3g089940 44.940 336 183 2 14 349 7 340 1.77e-104 312
MsG0580029511.01.T01 MTR_0001s0660 44.032 377 203 5 10 385 2 371 4.58e-104 315
MsG0580029511.01.T01 MTR_5g045710 43.197 294 161 5 95 387 3 291 1.22e-76 239
MsG0580029511.01.T01 MTR_8g095220 31.234 381 243 12 15 385 51 422 1.97e-39 145
MsG0580029511.01.T01 MTR_8g095220 33.603 247 153 6 15 253 51 294 2.37e-28 113
MsG0580029511.01.T01 MTR_6g465010 25.507 345 218 11 42 378 23 336 4.74e-22 96.7
MsG0580029511.01.T01 MTR_6g466320 25.507 345 218 11 42 378 39 352 7.40e-22 96.3
MsG0580029511.01.T01 MTR_6g465010 25.507 345 218 11 42 378 39 352 7.40e-22 96.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029511.01.T01 AT5G42250 69.666 389 116 2 1 387 1 389 0.0 572
MsG0580029511.01.T01 AT1G22430 59.640 389 153 4 3 389 2 388 3.20e-170 481
MsG0580029511.01.T01 AT1G22430 59.640 389 153 4 3 389 2 388 3.20e-170 481
MsG0580029511.01.T01 AT4G22110 60.614 391 150 4 1 389 1 389 3.59e-169 478
MsG0580029511.01.T01 AT4G22110 60.614 391 150 4 1 389 1 389 3.59e-169 478
MsG0580029511.01.T01 AT1G22440 60.519 385 148 4 7 389 4 386 9.37e-168 474
MsG0580029511.01.T01 AT5G43940 51.075 372 180 2 14 385 6 375 2.62e-136 394
MsG0580029511.01.T01 AT5G43940 50.546 366 179 2 20 385 24 387 1.73e-132 385
MsG0580029511.01.T01 AT5G24760 50.000 386 185 5 6 389 2 381 9.09e-132 383
MsG0580029511.01.T01 AT1G22430 60.678 295 113 3 3 295 2 295 6.73e-127 368
MsG0580029511.01.T01 AT1G77120 47.594 374 194 2 14 387 6 377 4.69e-125 366
MsG0580029511.01.T01 AT1G64710 48.533 375 188 5 16 387 8 380 5.93e-124 363
MsG0580029511.01.T01 AT5G24760 50.279 358 172 4 32 389 1 352 2.91e-123 360
MsG0580029511.01.T01 AT5G24760 50.279 358 172 4 32 389 1 352 2.91e-123 360
MsG0580029511.01.T01 AT1G32780 48.438 384 186 6 16 389 9 390 1.97e-118 349
MsG0580029511.01.T01 AT1G64710 47.911 359 182 5 32 387 1 357 2.86e-117 345
MsG0580029511.01.T01 AT1G22430 58.889 270 108 3 3 270 2 270 1.97e-111 328
MsG0580029511.01.T01 AT1G22430 58.889 270 108 3 3 270 2 270 1.97e-111 328
MsG0580029511.01.T01 AT4G22110 61.798 267 99 3 1 265 1 266 5.13e-111 326
MsG0580029511.01.T01 AT1G64710 47.403 308 158 4 82 387 6 311 5.07e-98 295
MsG0580029511.01.T01 AT5G24760 49.630 270 133 3 120 389 1 267 4.24e-87 265
MsG0580029511.01.T01 AT5G63620 28.533 368 249 8 19 379 57 417 9.33e-39 144
MsG0580029511.01.T01 AT5G63620 28.533 368 249 8 19 379 57 417 1.42e-38 143
MsG0580029511.01.T01 AT5G63620 29.461 241 163 3 19 253 57 296 6.32e-27 109
MsG0580029511.01.T01 AT5G51970 24.930 357 218 12 36 378 34 354 2.26e-20 92.0
MsG0580029511.01.T01 AT5G51970 24.930 357 218 12 36 378 34 354 2.26e-20 92.0
MsG0580029511.01.T01 AT4G37990 23.565 331 212 9 44 364 35 334 5.95e-11 63.9

Find 90 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACACACCTTTACATCTTA+TGG 0.160696 5:+97880618 None:intergenic
TATTTATCAGGAACTCAATT+TGG 0.180490 5:-97877606 MsG0580029511.01.T01:intron
ACTCTTATGGGGTCTATATT+TGG 0.200744 5:-97877825 MsG0580029511.01.T01:CDS
TGTGGAGCAACTAGGATTAT+AGG 0.276027 5:-97878631 MsG0580029511.01.T01:CDS
ACTAGATTCATTGATCTAAA+TGG 0.284802 5:-97879339 MsG0580029511.01.T01:CDS
CTTTATTCAGCGAAGAAGTT+TGG 0.298247 5:-97878456 MsG0580029511.01.T01:intron
CACACACCTTTACATCTTAT+GGG 0.302890 5:+97880619 None:intergenic
CTTTGTAAATCCTGGAGAAT+TGG 0.307283 5:-97878424 MsG0580029511.01.T01:CDS
TAAGAGTCTTCCCTTGAAAA+AGG 0.321797 5:+97877841 None:intergenic
AACCGATATAAGTATCAAAA+TGG 0.341329 5:-97877363 MsG0580029511.01.T01:three_prime_UTR
CCATCACTTGTTGCTGCAGC+AGG 0.349672 5:+97880649 None:intergenic
TTTCAAGGGAAGACTCTTAT+GGG 0.369580 5:-97877837 MsG0580029511.01.T01:CDS
ATCCAACAATTCCTCCCAAC+AGG 0.379793 5:-97879236 MsG0580029511.01.T01:CDS
CTTTACATCTTATGGGTTGT+TGG 0.379879 5:+97880626 None:intergenic
CATAGTTATCCCAATCTTCA+TGG 0.380845 5:-97879460 MsG0580029511.01.T01:CDS
AGTGTCTTCGGTGTGTGATT+TGG 0.391376 5:-97877514 MsG0580029511.01.T01:CDS
GCCCTGTTGGGAGGAATTGT+TGG 0.392172 5:+97879234 None:intergenic
CTCAGTTGTGGTGTATCAAC+AGG 0.395594 5:-97879204 MsG0580029511.01.T01:intron
TCACAATCAGCCATGAAGAT+TGG 0.401526 5:+97879450 None:intergenic
GAAAACAGCAAATGTTGAAC+CGG 0.406203 5:-97879076 MsG0580029511.01.T01:CDS
TGGATCAATCTTGAGTAGAT+TGG 0.410420 5:+97879254 None:intergenic
ATAAGTATCAAAATGGTGTT+AGG 0.415821 5:-97877356 MsG0580029511.01.T01:three_prime_UTR
CACAATCAGCCATGAAGATT+GGG 0.418681 5:+97879451 None:intergenic
TACTGGGTCATGAGGCAATT+GGG 0.421956 5:-97880042 MsG0580029511.01.T01:intron
GCTGAAGGAGCTAGACTTTG+TGG 0.441563 5:-97878649 MsG0580029511.01.T01:CDS
GTCACAGACTTTGTAAATCC+TGG 0.452717 5:-97878432 MsG0580029511.01.T01:CDS
GGAAAACAAATCTGTGAGTC+AGG 0.454117 5:-97878403 MsG0580029511.01.T01:CDS
ATCCAAGGTTTAATATCAAA+AGG 0.456805 5:+97879378 None:intergenic
AACTAGAGACAAATATGAAA+TGG 0.460302 5:+97879304 None:intergenic
CTGAGGAGGCATGCCCTGTT+GGG 0.462513 5:+97879222 None:intergenic
GCCTCATGACCCAGTATCCT+TGG 0.463153 5:+97880049 None:intergenic
TGCAGCAGGTTTATCTTCCA+TGG 0.473298 5:+97880663 None:intergenic
TCAATAATCAGTGGCTCACC+TGG 0.476109 5:+97880332 None:intergenic
TGACAAAAGGAGAGTGTCTT+CGG 0.477160 5:-97877526 MsG0580029511.01.T01:CDS
ATGTGTTGGTATGGCATCAT+TGG 0.482347 5:-97878337 MsG0580029511.01.T01:CDS
GATTATTGAGGAGATCTTTG+TGG 0.489087 5:-97880318 MsG0580029511.01.T01:CDS
CTAGACTTTGTGGAGCAACT+AGG 0.495288 5:-97878639 MsG0580029511.01.T01:CDS
TTGATACTCAACTTAGATCC+TGG 0.495669 5:+97877876 None:intergenic
CTAGCTTCATGTGGCATTGG+TGG 0.495830 5:+97880293 None:intergenic
TTGCTTTGAATGTGTTGGTA+TGG 0.503086 5:-97878346 MsG0580029511.01.T01:CDS
ACTGAGGAGGCATGCCCTGT+TGG 0.511132 5:+97879221 None:intergenic
AAGAATGGGTACATCAGACT+TGG 0.513039 5:+97877791 None:intergenic
CTTATGGGGTCTATATTTGG+AGG 0.514741 5:-97877822 MsG0580029511.01.T01:CDS
CAACAACCCATAAGATGTAA+AGG 0.516393 5:-97880625 MsG0580029511.01.T01:intron
AGCATATGCTTCATGTAGAA+AGG 0.522535 5:-97878307 MsG0580029511.01.T01:intron
GAAGTAACAGAAGTTACAAA+GGG 0.527117 5:-97879486 MsG0580029511.01.T01:CDS
ATCCTAGCTTCATGTGGCAT+TGG 0.528211 5:+97880290 None:intergenic
ATACTGGGTCATGAGGCAAT+TGG 0.530290 5:-97880043 MsG0580029511.01.T01:CDS
TCTTCCATGGCGATGAGTCA+AGG 0.534652 5:+97880676 None:intergenic
GATGAGTCAAGGGAGGGTAC+TGG 0.535679 5:+97880687 None:intergenic
TATATATTGACATAATTCAA+AGG 0.536676 5:+97877429 None:intergenic
GATTATTGCTTTGAATGTGT+TGG 0.539967 5:-97878351 MsG0580029511.01.T01:CDS
GGAAGTAACAGAAGTTACAA+AGG 0.541099 5:-97879487 MsG0580029511.01.T01:CDS
AGGGCATGCCTCCTCAGTTG+TGG 0.551435 5:-97879216 MsG0580029511.01.T01:CDS
ATGTTAGGAGTGGACAAGCC+AGG 0.552820 5:-97877894 MsG0580029511.01.T01:CDS
ATTGTTTCCTAGGTGGCTGA+AGG 0.554628 5:-97878664 MsG0580029511.01.T01:intron
ACTCGGATGTATTGGATTAG+CGG 0.554730 5:-97879031 MsG0580029511.01.T01:intron
TCCAAGGATACTGGGTCATG+AGG 0.566290 5:-97880050 MsG0580029511.01.T01:CDS
AGATCAAATATAAAACTAAG+AGG 0.567842 5:+97877391 None:intergenic
GTTATCATAGAGATGACTGA+TGG 0.568363 5:-97878381 MsG0580029511.01.T01:CDS
GCTGCGGTTTGTCGCAAACC+AGG 0.570156 5:-97880350 MsG0580029511.01.T01:CDS
CTTCCATGGCGATGAGTCAA+GGG 0.578363 5:+97880677 None:intergenic
CACCAATGCCACATGAAGCT+AGG 0.581082 5:-97880292 MsG0580029511.01.T01:CDS
TCTTCGGTGTGTGATTTGGA+TGG 0.582969 5:-97877510 MsG0580029511.01.T01:CDS
AAAACAGCAAATGTTGAACC+GGG 0.583487 5:-97879075 MsG0580029511.01.T01:CDS
CCTGCTGCAGCAACAAGTGA+TGG 0.586016 5:-97880649 MsG0580029511.01.T01:CDS
AGGAGGCATGCCCTGTTGGG+AGG 0.588882 5:+97879225 None:intergenic
CAAAAGGAAACTTTGAACAA+AGG 0.590036 5:+97879394 None:intergenic
TCTTAGGGGTAGGTGCTGCA+TGG 0.593039 5:-97879098 MsG0580029511.01.T01:intron
AGAATGGGTACATCAGACTT+GGG 0.595366 5:+97877792 None:intergenic
AGCAACTAGGATTATAGGTG+TGG 0.598387 5:-97878626 MsG0580029511.01.T01:CDS
TCCAGGGTTGTGGAAAGTGT+TGG 0.599735 5:-97879513 MsG0580029511.01.T01:intron
GATATCACTGTGACAAAGAG+AGG 0.603012 5:+97880253 None:intergenic
AGGTGAGCCACTGATTATTG+AGG 0.608296 5:-97880330 MsG0580029511.01.T01:CDS
TTCAAGGGAAGACTCTTATG+GGG 0.612341 5:-97877836 MsG0580029511.01.T01:CDS
ATTTAGATCAATGAATCTAG+TGG 0.622974 5:+97879341 None:intergenic
GGTTGTGGAAAGTGTTGGAG+AGG 0.628245 5:-97879508 MsG0580029511.01.T01:CDS
CCTCCCTTGACTCATCGCCA+TGG 0.635431 5:-97880680 MsG0580029511.01.T01:exon
AAAATAGCTACTGTCGACCC+CGG 0.636859 5:+97879057 None:intergenic
TCCAACAATTCCTCCCAACA+GGG 0.637346 5:-97879235 MsG0580029511.01.T01:CDS
ATCATAGAGATGACTGATGG+AGG 0.637658 5:-97878378 MsG0580029511.01.T01:CDS
AAGATCTCCTCAATAATCAG+TGG 0.639801 5:+97880323 None:intergenic
TTGATACACCACAACTGAGG+AGG 0.646650 5:+97879208 None:intergenic
CCATGGCGATGAGTCAAGGG+AGG 0.650108 5:+97880680 None:intergenic
GTATCATATCTAAGCATCCA+AGG 0.653021 5:+97879363 None:intergenic
AGTCAAGGGAGGGTACTGGA+AGG 0.656839 5:+97880691 None:intergenic
ATACGAATCCTAGCTTCATG+TGG 0.667924 5:+97880284 None:intergenic
CATGGCGATGAGTCAAGGGA+GGG 0.678909 5:+97880681 None:intergenic
CTGTTGATACACCACAACTG+AGG 0.718420 5:+97879205 None:intergenic
AAACAGCAAATGTTGAACCG+GGG 0.725303 5:-97879074 MsG0580029511.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATCAAAATAAAATTACA+TGG - Chr5:97877853-97877872 MsG0580029511.01.T01:CDS 10.0%
!! AACAAAAGATAAAATATAAT+TGG + Chr5:97880840-97880859 None:intergenic 10.0%
!! GAAAATATTAAATTTAATGA+AGG - Chr5:97878851-97878870 MsG0580029511.01.T01:intron 10.0%
!! TAATTATATGAACATATAAA+GGG - Chr5:97878386-97878405 MsG0580029511.01.T01:CDS 10.0%
!! TATTATCAAATTAAATTGAA+TGG + Chr5:97879159-97879178 None:intergenic 10.0%
!!! CTAATTTTTTAACTTTTTTT+TGG - Chr5:97879807-97879826 MsG0580029511.01.T01:intron 10.0%
!!! TATATTTTAGTTTATTTTGA+TGG + Chr5:97877411-97877430 None:intergenic 10.0%
!!! TTTTTTTTTTTTACTTTTGA+AGG - Chr5:97879556-97879575 MsG0580029511.01.T01:intron 10.0%
!! AATTATATGAACATATAAAG+GGG - Chr5:97878387-97878406 MsG0580029511.01.T01:CDS 15.0%
!! ATACAAATTAATAAAATGCA+TGG + Chr5:97879638-97879657 None:intergenic 15.0%
!! CATAAAAAAATAATGTTACA+AGG - Chr5:97877774-97877793 MsG0580029511.01.T01:CDS 15.0%
!! CTAATTATATGAACATATAA+AGG - Chr5:97878385-97878404 MsG0580029511.01.T01:CDS 15.0%
!! CTTTATATGTTCATATAATT+AGG + Chr5:97878387-97878406 None:intergenic 15.0%
!! TATATATTGACATAATTCAA+AGG + Chr5:97882219-97882238 None:intergenic 15.0%
!! TTTATGTCTTTATGTTAAAA+TGG + Chr5:97878162-97878181 None:intergenic 15.0%
!!! GTAATAGTTTTTTTTTTTGA+AGG - Chr5:97879111-97879130 MsG0580029511.01.T01:intron 15.0%
!! AGAAAGAAGAACAAAAATTA+TGG - Chr5:97878724-97878743 MsG0580029511.01.T01:intron 20.0%
!! AGATCAAATATAAAACTAAG+AGG + Chr5:97882257-97882276 None:intergenic 20.0%
!! ATATTTCTCATTTCCTAATT+AGG - Chr5:97879678-97879697 MsG0580029511.01.T01:intron 20.0%
!! ATTATATGAACATATAAAGG+GGG - Chr5:97878388-97878407 MsG0580029511.01.T01:CDS 20.0%
!! TATAAAATGTTAGCAAAAGA+GGG + Chr5:97881948-97881967 None:intergenic 20.0%
!! TATGAAATGTTATGTGAAAT+GGG + Chr5:97878209-97878228 None:intergenic 20.0%
!! TGTAATGTTTATAATGTACT+TGG - Chr5:97879962-97879981 MsG0580029511.01.T01:intron 20.0%
!! TTATAAAATGTTAGCAAAAG+AGG + Chr5:97881949-97881968 None:intergenic 20.0%
!! TTATCAAACATCAATTCTTA+GGG - Chr5:97880532-97880551 MsG0580029511.01.T01:intron 20.0%
!! TTTATCAAACATCAATTCTT+AGG - Chr5:97880531-97880550 MsG0580029511.01.T01:intron 20.0%
!! TTTATGTGGTTTATAATTCA+GGG + Chr5:97877571-97877590 None:intergenic 20.0%
!!! AAAAACCAGAGTTTTAAATA+GGG - Chr5:97877588-97877607 MsG0580029511.01.T01:CDS 20.0%
!!! AATTAATTTTTATGTGATCC+AGG - Chr5:97880115-97880134 MsG0580029511.01.T01:intron 20.0%
!!! ATATAATTAGGATTGATTCT+TGG + Chr5:97878375-97878394 None:intergenic 20.0%
!!! ATTAATTTTTATGTGATCCA+GGG - Chr5:97880116-97880135 MsG0580029511.01.T01:intron 20.0%
!!! CTTTATTTTAACCATGTTAT+TGG - Chr5:97881414-97881433 MsG0580029511.01.T01:intron 20.0%
!!! GAATTATTACTGATCTTTTA+TGG + Chr5:97878571-97878590 None:intergenic 20.0%
!!! TAAAAACCAGAGTTTTAAAT+AGG - Chr5:97877587-97877606 MsG0580029511.01.T01:CDS 20.0%
!!! TAATCGTTTCTATTTTCAAA+AGG + Chr5:97877518-97877537 None:intergenic 20.0%
!!! TAGTAATGTCAACAATTTTT+TGG - Chr5:97881999-97882018 MsG0580029511.01.T01:intron 20.0%
!!! TTACCAATTTCAAATTTTTC+TGG + Chr5:97881053-97881072 None:intergenic 20.0%
!!! TTTATCTTCTTGATTTTGTT+GGG + Chr5:97877963-97877982 None:intergenic 20.0%
!!! TTTTATGTGGTTTATAATTC+AGG + Chr5:97877572-97877591 None:intergenic 20.0%
!!! TTTTGATTTTAGTCTTTGAA+TGG + Chr5:97877843-97877862 None:intergenic 20.0%
!!! TTTTTCTCCAATTATTTATC+AGG - Chr5:97882027-97882046 MsG0580029511.01.T01:intron 20.0%
! AAAAACAATTATGTTAGGAG+TGG - Chr5:97881741-97881760 MsG0580029511.01.T01:intron 25.0%
! AACCGATATAAGTATCAAAA+TGG - Chr5:97882282-97882301 MsG0580029511.01.T01:intron 25.0%
! AACTAGAGACAAATATGAAA+TGG + Chr5:97880344-97880363 None:intergenic 25.0%
! ACTAGATTCATTGATCTAAA+TGG - Chr5:97880306-97880325 MsG0580029511.01.T01:CDS 25.0%
! AGATCATCAATTTCATTCAA+TGG - Chr5:97877982-97878001 MsG0580029511.01.T01:intron 25.0%
! ATAAAATGTTAGCAAAAGAG+GGG + Chr5:97881947-97881966 None:intergenic 25.0%
! ATAAGTATCAAAATGGTGTT+AGG - Chr5:97882289-97882308 MsG0580029511.01.T01:intron 25.0%
! ATCCAAGGTTTAATATCAAA+AGG + Chr5:97880270-97880289 None:intergenic 25.0%
! ATCTCTAATAAAACAATCAG+TGG - Chr5:97877346-97877365 MsG0580029511.01.T01:three_prime_UTR 25.0%
! ATGTAGCGTTTAAAAAGAAT+GGG + Chr5:97881871-97881890 None:intergenic 25.0%
! ATGTCTTTATGTTAAAATGG+TGG + Chr5:97878159-97878178 None:intergenic 25.0%
! ATTTAGATCAATGAATCTAG+TGG + Chr5:97880307-97880326 None:intergenic 25.0%
! CAAAACGAAAACATAAACTA+AGG + Chr5:97880650-97880669 None:intergenic 25.0%
! GTATAATCTTAAGAACAGAT+AGG - Chr5:97878594-97878613 MsG0580029511.01.T01:intron 25.0%
! GTATGAAATGTTATGTGAAA+TGG + Chr5:97878210-97878229 None:intergenic 25.0%
! TATCAAACATCAATTCTTAG+GGG - Chr5:97880533-97880552 MsG0580029511.01.T01:intron 25.0%
! TATTTATCAGGAACTCAATT+TGG - Chr5:97882039-97882058 MsG0580029511.01.T01:intron 25.0%
! TCCATTTCAATTTCACATTT+GGG + Chr5:97878833-97878852 None:intergenic 25.0%
! TGAAAAAAAATGTGATTGGA+AGG + Chr5:97881522-97881541 None:intergenic 25.0%
! TGGATGAAAAAAAATGTGAT+TGG + Chr5:97881526-97881545 None:intergenic 25.0%
! TTCCATTTCAATTTCACATT+TGG + Chr5:97878834-97878853 None:intergenic 25.0%
! TTGAGTTCCTGATAAATAAT+TGG + Chr5:97882037-97882056 None:intergenic 25.0%
! TTGTAATTGAATTGTTTCCT+AGG - Chr5:97880971-97880990 MsG0580029511.01.T01:intron 25.0%
! TTTAGCATACAAAACTACAA+AGG + Chr5:97880944-97880963 None:intergenic 25.0%
!! AAGCCAGAAAAATTTGAAAT+TGG - Chr5:97881047-97881066 MsG0580029511.01.T01:intron 25.0%
!! ATGTTTTCGTTTTGTAGTTT+AGG - Chr5:97880656-97880675 MsG0580029511.01.T01:CDS 25.0%
!! ATTACTGATCTTTTATGGTA+GGG + Chr5:97878566-97878585 None:intergenic 25.0%
!! ATTTAGTTCGGATTGTTAAA+CGG + Chr5:97880027-97880046 None:intergenic 25.0%
!! CTTTATCTTCTTGATTTTGT+TGG + Chr5:97877964-97877983 None:intergenic 25.0%
!! TATTACTGATCTTTTATGGT+AGG + Chr5:97878567-97878586 None:intergenic 25.0%
!! TTCCTTTTGATATTAAACCT+TGG - Chr5:97880265-97880284 MsG0580029511.01.T01:CDS 25.0%
!!! AAAACCAGAGTTTTAAATAG+GGG - Chr5:97877589-97877608 MsG0580029511.01.T01:CDS 25.0%
!!! AAAATTGGTGTTTTGATTTC+AGG - Chr5:97881711-97881730 MsG0580029511.01.T01:intron 25.0%
!!! AAATTGGTGTTTTGATTTCA+GGG - Chr5:97881712-97881731 MsG0580029511.01.T01:intron 25.0%
!!! AGTTATGTTTTAATGAGTCA+TGG + Chr5:97879062-97879081 None:intergenic 25.0%
!!! CACCATTTTGATACTTATAT+CGG + Chr5:97882287-97882306 None:intergenic 25.0%
!!! GTTATGTTTTAATGAGTCAT+GGG + Chr5:97879061-97879080 None:intergenic 25.0%
!!! TAAACTGTTTCTCTTTGTTT+TGG + Chr5:97878640-97878659 None:intergenic 25.0%
!!! TATCATTTTTTGGAAAATGC+AGG - Chr5:97879411-97879430 MsG0580029511.01.T01:CDS 25.0%
!!! TTAAAACTCTGGTTTTTATG+TGG + Chr5:97877585-97877604 None:intergenic 25.0%
!!! TTATTTTGATGGCAAAATGA+CGG + Chr5:97877400-97877419 None:intergenic 25.0%
AAACTTCTTCGCTGAATAAA+GGG + Chr5:97881190-97881209 None:intergenic 30.0%
AAAGCATAAAGTGCATCTTT+AGG + Chr5:97877454-97877473 None:intergenic 30.0%
AAAGTAATACCTTGGAACTT+TGG - Chr5:97877909-97877928 MsG0580029511.01.T01:CDS 30.0%
AACCAACCAACAAAACAAAT+CGG + Chr5:97878753-97878772 None:intergenic 30.0%
AAGGACCAGAAGAAATAAAA+AGG - Chr5:97877793-97877812 MsG0580029511.01.T01:CDS 30.0%
AATATCGCGTTAAACAGAAT+TGG + Chr5:97879940-97879959 None:intergenic 30.0%
ACAATCCGAACTAAATATGT+TGG - Chr5:97880031-97880050 MsG0580029511.01.T01:intron 30.0%
ACTTATTTGAGCTTCTCTAT+TGG - Chr5:97880692-97880711 MsG0580029511.01.T01:five_prime_UTR 30.0%
AGACAAAAGAAAAACCTATG+CGG - Chr5:97877876-97877895 MsG0580029511.01.T01:CDS 30.0%
AGATTAGTAATCGGCAAAAT+CGG + Chr5:97881453-97881472 None:intergenic 30.0%
AGTCATTTCACACAAACAAT+GGG - Chr5:97878881-97878900 MsG0580029511.01.T01:intron 30.0%
ATAGAGAAGCTCAAATAAGT+CGG + Chr5:97880692-97880711 None:intergenic 30.0%
ATTGTAGAGAATTTCACCTT+TGG + Chr5:97877820-97877839 None:intergenic 30.0%
ATTGTTCTGTTCTGTTCAAA+AGG + Chr5:97878308-97878327 None:intergenic 30.0%
CAAAAGGAAACTTTGAACAA+AGG + Chr5:97880254-97880273 None:intergenic 30.0%
CATCAATTTCATTCAATGGA+AGG - Chr5:97877986-97878005 MsG0580029511.01.T01:intron 30.0%
CATGTAGCGTTTAAAAAGAA+TGG + Chr5:97881872-97881891 None:intergenic 30.0%
CTAAGACCAGTGAATAAAAA+CGG + Chr5:97878433-97878452 None:intergenic 30.0%
CTCATTTCCTAATTAGGTAA+AGG - Chr5:97879684-97879703 MsG0580029511.01.T01:intron 30.0%
CTTTATGTTAAAATGGTGGT+TGG + Chr5:97878155-97878174 None:intergenic 30.0%
GAAGAAATAAAAAGGACCAA+AGG - Chr5:97877801-97877820 MsG0580029511.01.T01:CDS 30.0%
GAAGTAACAGAAGTTACAAA+GGG - Chr5:97880159-97880178 MsG0580029511.01.T01:intron 30.0%
GTTAGCTCAAATAATGAAAG+TGG + Chr5:97879902-97879921 None:intergenic 30.0%
GTTGTTCTCATAGACTATTA+TGG + Chr5:97880795-97880814 None:intergenic 30.0%
TAAGACCAGTGAATAAAAAC+GGG + Chr5:97878432-97878451 None:intergenic 30.0%
TAATTGAATTGTTTCCTAGG+TGG - Chr5:97880974-97880993 MsG0580029511.01.T01:intron 30.0%
TAGTCATTTCACACAAACAA+TGG - Chr5:97878880-97878899 MsG0580029511.01.T01:intron 30.0%
TCTAATAAAACAATCAGTGG+CGG - Chr5:97877349-97877368 MsG0580029511.01.T01:three_prime_UTR 30.0%
TGAAAGATGACATAAACAAG+AGG + Chr5:97882174-97882193 None:intergenic 30.0%
TGAGACCAACATATTTAGTT+CGG + Chr5:97880039-97880058 None:intergenic 30.0%
TGGAAAAGAAAGTAATACCT+TGG - Chr5:97877901-97877920 MsG0580029511.01.T01:CDS 30.0%
TGGGGAAAAACAATTATGTT+AGG - Chr5:97881736-97881755 MsG0580029511.01.T01:intron 30.0%
TTCAGGGACTAAAATCAATA+TGG + Chr5:97877555-97877574 None:intergenic 30.0%
TTGCACACAAATGAAGAATA+TGG + Chr5:97881642-97881661 None:intergenic 30.0%
TTTCCTAATTAGGTAAAGGA+AGG - Chr5:97879688-97879707 MsG0580029511.01.T01:intron 30.0%
! AAAACTACAAAGGTTTTGCT+TGG + Chr5:97880934-97880953 None:intergenic 30.0%
! ATTTGCAAATTTTGTAGCTG+CGG - Chr5:97879279-97879298 MsG0580029511.01.T01:CDS 30.0%
! CAATCCTAAGAGTACAAAAT+AGG - Chr5:97878266-97878285 MsG0580029511.01.T01:intron 30.0%
! CATTCTTTTTAAACGCTACA+TGG - Chr5:97881870-97881889 MsG0580029511.01.T01:intron 30.0%
! CGCTATTTAAAACTCTGATA+AGG - Chr5:97877740-97877759 MsG0580029511.01.T01:intron 30.0%
! CGTTTCTATTTTCAAAAGGA+AGG + Chr5:97877514-97877533 None:intergenic 30.0%
! GATTATTGCTTTGAATGTGT+TGG - Chr5:97881294-97881313 MsG0580029511.01.T01:intron 30.0%
! TACTTGTTGAAAGAATGGAT+TGG - Chr5:97881688-97881707 MsG0580029511.01.T01:intron 30.0%
! TGTTCCTATTTTGTACTCTT+AGG + Chr5:97878273-97878292 None:intergenic 30.0%
! TTACTGATCTTTTATGGTAG+GGG + Chr5:97878565-97878584 None:intergenic 30.0%
!! GAAAGAATGGATTGGAAAAT+TGG - Chr5:97881696-97881715 MsG0580029511.01.T01:intron 30.0%
!! TCAAAAATTGGTAACGATGA+AGG + Chr5:97879991-97880010 None:intergenic 30.0%
!! TTGGTCCTTTTTATTTCTTC+TGG + Chr5:97877801-97877820 None:intergenic 30.0%
!!! AGAGTTTTAAATAGCGATTG+CGG + Chr5:97877736-97877755 None:intergenic 30.0%
!!! ATATGCAGATTTTGAAGCAT+GGG + Chr5:97878485-97878504 None:intergenic 30.0%
!!! ATTTGTTTTGTTGGTTGGTT+GGG - Chr5:97878753-97878772 MsG0580029511.01.T01:intron 30.0%
!!! GCTTTTGATTTGTTGACAAA+AGG - Chr5:97882106-97882125 MsG0580029511.01.T01:intron 30.0%
!!! GTCACAGTGATATCATTTTT+TGG - Chr5:97879401-97879420 MsG0580029511.01.T01:CDS 30.0%
!!! TAGTTTTAGTGAGTATACTG+TGG - Chr5:97880359-97880378 MsG0580029511.01.T01:intron 30.0%
!!! TATATGCAGATTTTGAAGCA+TGG + Chr5:97878486-97878505 None:intergenic 30.0%
!!! TGATTCTTGGATTGTTGTTT+TGG + Chr5:97878362-97878381 None:intergenic 30.0%
!!! TTTTTTTCATCCACAATGCT+TGG - Chr5:97881533-97881552 MsG0580029511.01.T01:intron 30.0%
AAAACAGCAAATGTTGAACC+GGG - Chr5:97880570-97880589 MsG0580029511.01.T01:intron 35.0%
AAACATCAATTCTTAGGGGT+AGG - Chr5:97880537-97880556 MsG0580029511.01.T01:intron 35.0%
AACTTCTTCGCTGAATAAAG+GGG + Chr5:97881189-97881208 None:intergenic 35.0%
AAGATCTCCTCAATAATCAG+TGG + Chr5:97879325-97879344 None:intergenic 35.0%
ACACACACCTTTACATCTTA+TGG + Chr5:97879030-97879049 None:intergenic 35.0%
ACCAACCAACAAAACAAATC+GGG + Chr5:97878752-97878771 None:intergenic 35.0%
ACTCTTATGGGGTCTATATT+TGG - Chr5:97881820-97881839 MsG0580029511.01.T01:intron 35.0%
AGCATATGCTTCATGTAGAA+AGG - Chr5:97881338-97881357 MsG0580029511.01.T01:intron 35.0%
AGTATCCTTGGAAAAATTGC+AGG + Chr5:97879587-97879606 None:intergenic 35.0%
AGTTGGCAGAGATTAGTAAT+CGG + Chr5:97881462-97881481 None:intergenic 35.0%
CAAACTTCTTCGCTGAATAA+AGG + Chr5:97881191-97881210 None:intergenic 35.0%
CAACAACCCATAAGATGTAA+AGG - Chr5:97879020-97879039 MsG0580029511.01.T01:intron 35.0%
CACACACCTTTACATCTTAT+GGG + Chr5:97879029-97879048 None:intergenic 35.0%
CATAGTTATCCCAATCTTCA+TGG - Chr5:97880185-97880204 MsG0580029511.01.T01:intron 35.0%
CTTCCTTCCTTTACCTAATT+AGG + Chr5:97879694-97879713 None:intergenic 35.0%
CTTTATTCAGCGAAGAAGTT+TGG - Chr5:97881189-97881208 MsG0580029511.01.T01:intron 35.0%
CTTTGTAAATCCTGGAGAAT+TGG - Chr5:97881221-97881240 MsG0580029511.01.T01:intron 35.0%
GAAAACAGCAAATGTTGAAC+CGG - Chr5:97880569-97880588 MsG0580029511.01.T01:intron 35.0%
GAACAGATAGGTTCAAAATC+TGG - Chr5:97878606-97878625 MsG0580029511.01.T01:CDS 35.0%
GATACTTTGCACCAATAACA+TGG + Chr5:97881428-97881447 None:intergenic 35.0%
GATTATTGAGGAGATCTTTG+TGG - Chr5:97879327-97879346 MsG0580029511.01.T01:CDS 35.0%
GCCCAAATGTGAAATTGAAA+TGG - Chr5:97878829-97878848 MsG0580029511.01.T01:intron 35.0%
GGAAGTAACAGAAGTTACAA+AGG - Chr5:97880158-97880177 MsG0580029511.01.T01:intron 35.0%
GTATCATATCTAAGCATCCA+AGG + Chr5:97880285-97880304 None:intergenic 35.0%
GTCATTTCACACAAACAATG+GGG - Chr5:97878882-97878901 MsG0580029511.01.T01:intron 35.0%
GTTATCATAGAGATGACTGA+TGG - Chr5:97881264-97881283 MsG0580029511.01.T01:intron 35.0%
TAAGAGTCTTCCCTTGAAAA+AGG + Chr5:97881807-97881826 None:intergenic 35.0%
TCAACAGGTATGCAAATTCA+AGG - Chr5:97880456-97880475 MsG0580029511.01.T01:intron 35.0%
TGGATCAATCTTGAGTAGAT+TGG + Chr5:97880394-97880413 None:intergenic 35.0%
TTGATACTCAACTTAGATCC+TGG + Chr5:97881772-97881791 None:intergenic 35.0%
TTTATTCTACCCTGTTTGTG+TGG - Chr5:97879720-97879739 MsG0580029511.01.T01:intron 35.0%
TTTCAAGGGAAGACTCTTAT+GGG - Chr5:97881808-97881827 MsG0580029511.01.T01:intron 35.0%
! CTGCATACTTGTTGAAAGAA+TGG - Chr5:97881683-97881702 MsG0580029511.01.T01:intron 35.0%
! CTTTACATCTTATGGGTTGT+TGG + Chr5:97879022-97879041 None:intergenic 35.0%
! GCAATTTTTCCAAGGATACT+GGG - Chr5:97879587-97879606 MsG0580029511.01.T01:intron 35.0%
! GGATGATTTTGTTACACATG+AGG - Chr5:97882060-97882079 MsG0580029511.01.T01:intron 35.0%
! GGGACTATTAGATGTCTTTT+TGG + Chr5:97878545-97878564 None:intergenic 35.0%
! TGATTTTGTTACACATGAGG+TGG - Chr5:97882063-97882082 MsG0580029511.01.T01:intron 35.0%
! TGCAATTTTTCCAAGGATAC+TGG - Chr5:97879586-97879605 MsG0580029511.01.T01:intron 35.0%
! TGGTCTTAGTTGTTGAAACA+AGG - Chr5:97878444-97878463 MsG0580029511.01.T01:CDS 35.0%
! TTGCTTTGAATGTGTTGGTA+TGG - Chr5:97881299-97881318 MsG0580029511.01.T01:intron 35.0%
! TTTTAAACGCTACATGGACA+AGG - Chr5:97881876-97881895 MsG0580029511.01.T01:intron 35.0%
! TTTTGTAGTTTAGGCCTGTT+TGG - Chr5:97880665-97880684 MsG0580029511.01.T01:exon 35.0%
!! ATTTTTGGACTCGGATGTAT+TGG - Chr5:97880606-97880625 MsG0580029511.01.T01:intron 35.0%
!! GATTTGTTTTCCAATTCTCC+AGG + Chr5:97881234-97881253 None:intergenic 35.0%
!! TTTTCAAGGGAAGACTCTTA+TGG - Chr5:97881807-97881826 MsG0580029511.01.T01:intron 35.0%
!!! ACAGTAGCTATTTTTGGACT+CGG - Chr5:97880597-97880616 MsG0580029511.01.T01:intron 35.0%
!!! AGTACTGATGTCCTTTTTCA+AGG - Chr5:97881793-97881812 MsG0580029511.01.T01:intron 35.0%
!!! GATTTGTTTTGTTGGTTGGT+TGG - Chr5:97878752-97878771 MsG0580029511.01.T01:intron 35.0%
!!! GTACTGATGTCCTTTTTCAA+GGG - Chr5:97881794-97881813 MsG0580029511.01.T01:intron 35.0%
AAACAGCAAATGTTGAACCG+GGG - Chr5:97880571-97880590 MsG0580029511.01.T01:intron 40.0%
AAAGAAAAACCTATGCGGCA+TGG - Chr5:97877881-97877900 MsG0580029511.01.T01:CDS 40.0%
AAATCTCCACCAAAGTTCCA+AGG + Chr5:97877921-97877940 None:intergenic 40.0%
AAGAATGGGTACATCAGACT+TGG + Chr5:97881857-97881876 None:intergenic 40.0%
AGAATGGGTACATCAGACTT+GGG + Chr5:97881856-97881875 None:intergenic 40.0%
AGCAACTAGGATTATAGGTG+TGG - Chr5:97881019-97881038 MsG0580029511.01.T01:intron 40.0%
AGTGTATGACCACACAAACA+GGG + Chr5:97879732-97879751 None:intergenic 40.0%
ATACGAATCCTAGCTTCATG+TGG + Chr5:97879364-97879383 None:intergenic 40.0%
ATCATAGAGATGACTGATGG+AGG - Chr5:97881267-97881286 MsG0580029511.01.T01:intron 40.0%
ATCCTTGGAAAAATTGCAGG+AGG + Chr5:97879584-97879603 None:intergenic 40.0%
ATTTCACACAAACAATGGGG+TGG - Chr5:97878885-97878904 MsG0580029511.01.T01:intron 40.0%
ATTTCCTGAACAAATCCAGG+TGG - Chr5:97877937-97877956 MsG0580029511.01.T01:intron 40.0%
CACAATCAGCCATGAAGATT+GGG + Chr5:97880197-97880216 None:intergenic 40.0%
CACAGATCTATGATTGTGCA+AGG + Chr5:97878690-97878709 None:intergenic 40.0%
CTCACATTGCCAAAGTTCTT+AGG - Chr5:97879853-97879872 MsG0580029511.01.T01:intron 40.0%
CTTATGGGGTCTATATTTGG+AGG - Chr5:97881823-97881842 MsG0580029511.01.T01:intron 40.0%
CTTCGCTCACTCTCAAAAAT+TGG + Chr5:97880003-97880022 None:intergenic 40.0%
GAGATTTCCTGAACAAATCC+AGG - Chr5:97877934-97877953 MsG0580029511.01.T01:intron 40.0%
GAGCCAGACAAAAAAGTTTG+GGG - Chr5:97877371-97877390 MsG0580029511.01.T01:three_prime_UTR 40.0%
GATATCACTGTGACAAAGAG+AGG + Chr5:97879395-97879414 None:intergenic 40.0%
GCTTCTGATGAGAGAGAAAT+TGG - Chr5:97878804-97878823 MsG0580029511.01.T01:intron 40.0%
GGAAAACAAATCTGTGAGTC+AGG - Chr5:97881242-97881261 MsG0580029511.01.T01:intron 40.0%
GGAGCCAGACAAAAAAGTTT+GGG - Chr5:97877370-97877389 MsG0580029511.01.T01:three_prime_UTR 40.0%
GTAATACCTTGGAACTTTGG+TGG - Chr5:97877912-97877931 MsG0580029511.01.T01:CDS 40.0%
GTCACAGACTTTGTAAATCC+TGG - Chr5:97881213-97881232 MsG0580029511.01.T01:intron 40.0%
TCAAATAAGTCGGTCCAAAC+AGG + Chr5:97880682-97880701 None:intergenic 40.0%
TCACAATCAGCCATGAAGAT+TGG + Chr5:97880198-97880217 None:intergenic 40.0%
TGGAAGGATAGACTCCATAA+GGG + Chr5:97881506-97881525 None:intergenic 40.0%
TGTGGAGCAACTAGGATTAT+AGG - Chr5:97881014-97881033 MsG0580029511.01.T01:intron 40.0%
TTCAAGGGAAGACTCTTATG+GGG - Chr5:97881809-97881828 MsG0580029511.01.T01:intron 40.0%
TTGAAACAAGGTCATCTCTC+CGG - Chr5:97878456-97878475 MsG0580029511.01.T01:intron 40.0%
TTGGAAGGATAGACTCCATA+AGG + Chr5:97881507-97881526 None:intergenic 40.0%
! ACTCGGATGTATTGGATTAG+CGG - Chr5:97880614-97880633 MsG0580029511.01.T01:intron 40.0%
! ACTGGAAGGATTGTTTTCAG+TGG + Chr5:97878943-97878962 None:intergenic 40.0%
! ATGTGTTGGTATGGCATCAT+TGG - Chr5:97881308-97881327 MsG0580029511.01.T01:intron 40.0%
! TGTGCCCCTATTTAAAACTC+TGG + Chr5:97877596-97877615 None:intergenic 40.0%
! TTTTATGTGATCCAGGGTTG+TGG - Chr5:97880122-97880141 MsG0580029511.01.T01:intron 40.0%
!! AAGGTCTTCAGCTCTGAAAA+GGG - Chr5:97878005-97878024 MsG0580029511.01.T01:intron 40.0%
!! AGAAGCCCGTTTTTATTCAC+TGG - Chr5:97878424-97878443 MsG0580029511.01.T01:CDS 40.0%
!! GATGTATTGGATTAGCGGTA+TGG - Chr5:97880619-97880638 MsG0580029511.01.T01:intron 40.0%
!! TGACAAAAGGAGAGTGTCTT+CGG - Chr5:97882119-97882138 MsG0580029511.01.T01:intron 40.0%
!!! GGTGTTTTGATTTCAGGGTT+GGG - Chr5:97881717-97881736 MsG0580029511.01.T01:intron 40.0%
!!! GTGTTTTGATTTCAGGGTTG+GGG - Chr5:97881718-97881737 MsG0580029511.01.T01:intron 40.0%
!!! TCCCGATTTGTTTTGTTGGT+TGG - Chr5:97878748-97878767 MsG0580029511.01.T01:intron 40.0%
!!! TGGATCCCGATTTGTTTTGT+TGG - Chr5:97878744-97878763 MsG0580029511.01.T01:intron 40.0%
!!! TGGTGTTTTGATTTCAGGGT+TGG - Chr5:97881716-97881735 MsG0580029511.01.T01:intron 40.0%
AAAATAGCTACTGTCGACCC+CGG + Chr5:97880591-97880610 None:intergenic 45.0%
AAGGATAGACTCCATAAGGG+TGG + Chr5:97881503-97881522 None:intergenic 45.0%
ATACTGGGTCATGAGGCAAT+TGG - Chr5:97879602-97879621 MsG0580029511.01.T01:intron 45.0%
ATCCAACAATTCCTCCCAAC+AGG - Chr5:97880409-97880428 MsG0580029511.01.T01:intron 45.0%
ATCCTAGCTTCATGTGGCAT+TGG + Chr5:97879358-97879377 None:intergenic 45.0%
ATTGTTTCCTAGGTGGCTGA+AGG - Chr5:97880981-97881000 MsG0580029511.01.T01:intron 45.0%
CAAAGTTGCATTAGTCCGAG+TGG + Chr5:97881594-97881613 None:intergenic 45.0%
CAACTAGACACCATGACAGT+TGG + Chr5:97881479-97881498 None:intergenic 45.0%
CAACTGTCATGGTGTCTAGT+TGG - Chr5:97881477-97881496 MsG0580029511.01.T01:intron 45.0%
CACTCGGACTAATGCAACTT+TGG - Chr5:97881592-97881611 MsG0580029511.01.T01:intron 45.0%
CATAGATCTGTGACACGTCT+TGG - Chr5:97878698-97878717 MsG0580029511.01.T01:intron 45.0%
CCAGACAAAAAAGTTTGGGG+TGG - Chr5:97877374-97877393 MsG0580029511.01.T01:three_prime_UTR 45.0%
CGGAGCCAGACAAAAAAGTT+TGG - Chr5:97877369-97877388 MsG0580029511.01.T01:three_prime_UTR 45.0%
CGTTGCAGACCTAAGAACTT+TGG + Chr5:97879865-97879884 None:intergenic 45.0%
CTAATCTCTGCCAACTGTCA+TGG - Chr5:97881466-97881485 MsG0580029511.01.T01:intron 45.0%
CTAGACTTTGTGGAGCAACT+AGG - Chr5:97881006-97881025 MsG0580029511.01.T01:intron 45.0%
CTCAGTTGTGGTGTATCAAC+AGG - Chr5:97880441-97880460 MsG0580029511.01.T01:intron 45.0%
CTGTTGATACACCACAACTG+AGG + Chr5:97880443-97880462 None:intergenic 45.0%
GAGTGTATGACCACACAAAC+AGG + Chr5:97879733-97879752 None:intergenic 45.0%
GATCTCTCAAGCAAGGTTTC+GGG + Chr5:97881560-97881579 None:intergenic 45.0%
GGATCTCTCAAGCAAGGTTT+CGG + Chr5:97881561-97881580 None:intergenic 45.0%
TACTGGGTCATGAGGCAATT+GGG - Chr5:97879603-97879622 MsG0580029511.01.T01:intron 45.0%
TCAATAATCAGTGGCTCACC+TGG + Chr5:97879316-97879335 None:intergenic 45.0%
TCCAACAATTCCTCCCAACA+GGG - Chr5:97880410-97880429 MsG0580029511.01.T01:intron 45.0%
TCTCTCATCAGAAGCCAGAA+GGG + Chr5:97878799-97878818 None:intergenic 45.0%
TGCAGCAGGTTTATCTTCCA+TGG + Chr5:97878985-97879004 None:intergenic 45.0%
TGCGGTAACAGTTGCAATTG+CGG + Chr5:97877718-97877737 None:intergenic 45.0%
TGGTTGGGAGAAGAAGAGAA+AGG - Chr5:97878768-97878787 MsG0580029511.01.T01:intron 45.0%
TTATTTCGCAGCTCAGATCG+CGG + Chr5:97877622-97877641 None:intergenic 45.0%
TTCTTCGCTGAATAAAGGGG+AGG + Chr5:97881186-97881205 None:intergenic 45.0%
TTGATACACCACAACTGAGG+AGG + Chr5:97880440-97880459 None:intergenic 45.0%
TTGTTAACTACGTGCATGCG+TGG + Chr5:97879755-97879774 None:intergenic 45.0%
! AGCCTCCTGCAATTTTTCCA+AGG - Chr5:97879579-97879598 MsG0580029511.01.T01:intron 45.0%
! AGGTGAGCCACTGATTATTG+AGG - Chr5:97879315-97879334 MsG0580029511.01.T01:CDS 45.0%
! AGTGTCTTCGGTGTGTGATT+TGG - Chr5:97882131-97882150 MsG0580029511.01.T01:intron 45.0%
! CTTTCTTTTCCATGCCGCAT+AGG + Chr5:97877893-97877912 None:intergenic 45.0%
! GGAAGGATTGTTTTCAGTGG+CGG + Chr5:97878940-97878959 None:intergenic 45.0%
! TCTTCGGTGTGTGATTTGGA+TGG - Chr5:97882135-97882154 MsG0580029511.01.T01:intron 45.0%
!! ATTGTTTTCAGTGGCGGAAC+TGG + Chr5:97878934-97878953 None:intergenic 45.0%
!! GAAGGTCTTCAGCTCTGAAA+AGG - Chr5:97878004-97878023 MsG0580029511.01.T01:intron 45.0%
!! GGGTCGACAGTAGCTATTTT+TGG - Chr5:97880591-97880610 MsG0580029511.01.T01:intron 45.0%
!! TTGTTTTCAGTGGCGGAACT+GGG + Chr5:97878933-97878952 None:intergenic 45.0%
!!! CCACCCCAAACTTTTTTGTC+TGG + Chr5:97877377-97877396 None:intergenic 45.0%
!!! GATTTTGAAGCATGGGTTGC+CGG + Chr5:97878478-97878497 None:intergenic 45.0%
!! AAAATATTAAATTTAATGAA+GGG - Chr5:97878852-97878871 MsG0580029511.01.T01:intron 5.0%
!!! AAACTATTTTTTATTTTTTT+TGG - Chr5:97879203-97879222 MsG0580029511.01.T01:intron 5.0%
AGATCTGTGACACGTCTTGG+AGG - Chr5:97878701-97878720 MsG0580029511.01.T01:intron 50.0%
ATGTTAGGAGTGGACAAGCC+AGG - Chr5:97881751-97881770 MsG0580029511.01.T01:intron 50.0%
CACCAATGCCACATGAAGCT+AGG - Chr5:97879353-97879372 MsG0580029511.01.T01:CDS 50.0%
CTCTCATCAGAAGCCAGAAG+GGG + Chr5:97878798-97878817 None:intergenic 50.0%
CTCTCTCATCAGAAGCCAGA+AGG + Chr5:97878800-97878819 None:intergenic 50.0%
CTTCCATGGCGATGAGTCAA+GGG + Chr5:97878971-97878990 None:intergenic 50.0%
GCTGAAGGAGCTAGACTTTG+TGG - Chr5:97880996-97881015 MsG0580029511.01.T01:intron 50.0%
TCACACAAACAATGGGGTGG+CGG - Chr5:97878888-97878907 MsG0580029511.01.T01:intron 50.0%
TCCAACACTTTCCACAACCC+TGG + Chr5:97880136-97880155 None:intergenic 50.0%
TCCAAGGATACTGGGTCATG+AGG - Chr5:97879595-97879614 MsG0580029511.01.T01:intron 50.0%
TCTTCCATGGCGATGAGTCA+AGG + Chr5:97878972-97878991 None:intergenic 50.0%
TGCATTAGTCCGAGTGGAAC+TGG + Chr5:97881588-97881607 None:intergenic 50.0%
TGTCTAGTTGGCCACCCTTA+TGG - Chr5:97881489-97881508 MsG0580029511.01.T01:intron 50.0%
! ATGTGCTGATGCTGCCACAA+TGG + Chr5:97877681-97877700 None:intergenic 50.0%
! CTAGCTTCATGTGGCATTGG+TGG + Chr5:97879355-97879374 None:intergenic 50.0%
! CTTGATTTTGTTGGGCCACC+TGG + Chr5:97877955-97877974 None:intergenic 50.0%
! TCCAGGGTTGTGGAAAGTGT+TGG - Chr5:97880132-97880151 MsG0580029511.01.T01:intron 50.0%
!! GGTTGTGGAAAGTGTTGGAG+AGG - Chr5:97880137-97880156 MsG0580029511.01.T01:intron 50.0%
!! TGTTTTCAGTGGCGGAACTG+GGG + Chr5:97878932-97878951 None:intergenic 50.0%
AGTCCGAGTGGAACTGGACT+CGG + Chr5:97881582-97881601 None:intergenic 55.0%
CATGGCGATGAGTCAAGGGA+GGG + Chr5:97878967-97878986 None:intergenic 55.0%
CCTGCTGCAGCAACAAGTGA+TGG - Chr5:97878996-97879015 MsG0580029511.01.T01:intron 55.0%
GATCCGAGTCCAGTTCCACT+CGG - Chr5:97881576-97881595 MsG0580029511.01.T01:intron 55.0%
GCCCTGTTGGGAGGAATTGT+TGG + Chr5:97880414-97880433 None:intergenic 55.0%
GCCTCATGACCCAGTATCCT+TGG + Chr5:97879599-97879618 None:intergenic 55.0%
GGACTCGGATCTCTCAAGCA+AGG + Chr5:97881567-97881586 None:intergenic 55.0%
GTGCAATGCAACCGCCATTG+TGG - Chr5:97877664-97877683 MsG0580029511.01.T01:intron 55.0%
TGCTGATGCTGCCACAATGG+CGG + Chr5:97877678-97877697 None:intergenic 55.0%
! CCATCACTTGTTGCTGCAGC+AGG + Chr5:97878999-97879018 None:intergenic 55.0%
! GATGAGTCAAGGGAGGGTAC+TGG + Chr5:97878961-97878980 None:intergenic 55.0%
! GGTTTCGGGTCCAAGCATTG+TGG + Chr5:97881546-97881565 None:intergenic 55.0%
! TCTAGCTCCTTCAGCCACCT+AGG + Chr5:97880991-97881010 None:intergenic 55.0%
! TCTTAGGGGTAGGTGCTGCA+TGG - Chr5:97880547-97880566 MsG0580029511.01.T01:intron 55.0%
! TGGGCCACCTGGATTTGTTC+AGG + Chr5:97877944-97877963 None:intergenic 55.0%
!! AGAGAAAGGCGTTCCCCTTC+TGG - Chr5:97878782-97878801 MsG0580029511.01.T01:intron 55.0%
!! AGTCAAGGGAGGGTACTGGA+AGG + Chr5:97878957-97878976 None:intergenic 55.0%
!! GTTTTCAGTGGCGGAACTGG+GGG + Chr5:97878931-97878950 None:intergenic 55.0%
!! TTTTCAGTGGCGGAACTGGG+GGG + Chr5:97878930-97878949 None:intergenic 55.0%
AGGGCATGCCTCCTCAGTTG+TGG - Chr5:97880429-97880448 MsG0580029511.01.T01:intron 60.0%
CCATGGCGATGAGTCAAGGG+AGG + Chr5:97878968-97878987 None:intergenic 60.0%
CCTCCCTTGACTCATCGCCA+TGG - Chr5:97878965-97878984 MsG0580029511.01.T01:intron 60.0%
GCTGCGGTTTGTCGCAAACC+AGG - Chr5:97879295-97879314 MsG0580029511.01.T01:CDS 60.0%
! ACTGAGGAGGCATGCCCTGT+TGG + Chr5:97880427-97880446 None:intergenic 60.0%
! CACAAACAATGGGGTGGCGG+TGG - Chr5:97878891-97878910 MsG0580029511.01.T01:intron 60.0%
! CTGAGGAGGCATGCCCTGTT+GGG + Chr5:97880426-97880445 None:intergenic 60.0%
! AGGAGGCATGCCCTGTTGGG+AGG + Chr5:97880423-97880442 None:intergenic 65.0%
CGGAACTGGGGGGTGGCAAG+GGG + Chr5:97878920-97878939 None:intergenic 70.0%
GCGGAACTGGGGGGTGGCAA+GGG + Chr5:97878921-97878940 None:intergenic 70.0%
GGAACTGGGGGGTGGCAAGG+GGG + Chr5:97878919-97878938 None:intergenic 70.0%
! TCAGTGGCGGAACTGGGGGG+TGG + Chr5:97878927-97878946 None:intergenic 70.0%
GGCGGAACTGGGGGGTGGCA+AGG + Chr5:97878922-97878941 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr5 gene 97877334 97882333 97877334 ID=MsG0580029511.01;Name=MsG0580029511.01
Chr5 mRNA 97877334 97882333 97877334 ID=MsG0580029511.01.T01;Parent=MsG0580029511.01;Name=MsG0580029511.01.T01;_AED=0.39;_eAED=0.39;_QI=59|1|1|1|0.7|0.72|11|146|389
Chr5 exon 97877334 97877479 97877334 ID=MsG0580029511.01.T01:exon:25369;Parent=MsG0580029511.01.T01
Chr5 exon 97877502 97877618 97877502 ID=MsG0580029511.01.T01:exon:25368;Parent=MsG0580029511.01.T01
Chr5 exon 97877770 97877934 97877770 ID=MsG0580029511.01.T01:exon:25367;Parent=MsG0580029511.01.T01
Chr5 exon 97878308 97878468 97878308 ID=MsG0580029511.01.T01:exon:25366;Parent=MsG0580029511.01.T01
Chr5 exon 97878599 97878674 97878599 ID=MsG0580029511.01.T01:exon:25365;Parent=MsG0580029511.01.T01
Chr5 exon 97879032 97879114 97879032 ID=MsG0580029511.01.T01:exon:25364;Parent=MsG0580029511.01.T01
Chr5 exon 97879205 97879530 97879205 ID=MsG0580029511.01.T01:exon:25363;Parent=MsG0580029511.01.T01
Chr5 exon 97880043 97880089 97880043 ID=MsG0580029511.01.T01:exon:25362;Parent=MsG0580029511.01.T01
Chr5 exon 97880235 97880371 97880235 ID=MsG0580029511.01.T01:exon:25361;Parent=MsG0580029511.01.T01
Chr5 exon 97880626 97880721 97880626 ID=MsG0580029511.01.T01:exon:25360;Parent=MsG0580029511.01.T01
Chr5 exon 97882313 97882333 97882313 ID=MsG0580029511.01.T01:exon:25359;Parent=MsG0580029511.01.T01
Chr5 five_prime_UTR 97882313 97882333 97882313 ID=MsG0580029511.01.T01:five_prime_utr;Parent=MsG0580029511.01.T01
Chr5 five_prime_UTR 97880684 97880721 97880684 ID=MsG0580029511.01.T01:five_prime_utr;Parent=MsG0580029511.01.T01
Chr5 CDS 97880626 97880683 97880626 ID=MsG0580029511.01.T01:cds;Parent=MsG0580029511.01.T01
Chr5 CDS 97880235 97880371 97880235 ID=MsG0580029511.01.T01:cds;Parent=MsG0580029511.01.T01
Chr5 CDS 97880043 97880089 97880043 ID=MsG0580029511.01.T01:cds;Parent=MsG0580029511.01.T01
Chr5 CDS 97879205 97879530 97879205 ID=MsG0580029511.01.T01:cds;Parent=MsG0580029511.01.T01
Chr5 CDS 97879032 97879114 97879032 ID=MsG0580029511.01.T01:cds;Parent=MsG0580029511.01.T01
Chr5 CDS 97878599 97878674 97878599 ID=MsG0580029511.01.T01:cds;Parent=MsG0580029511.01.T01
Chr5 CDS 97878308 97878468 97878308 ID=MsG0580029511.01.T01:cds;Parent=MsG0580029511.01.T01
Chr5 CDS 97877770 97877934 97877770 ID=MsG0580029511.01.T01:cds;Parent=MsG0580029511.01.T01
Chr5 CDS 97877502 97877618 97877502 ID=MsG0580029511.01.T01:cds;Parent=MsG0580029511.01.T01
Chr5 three_prime_UTR 97877334 97877479 97877334 ID=MsG0580029511.01.T01:three_prime_utr;Parent=MsG0580029511.01.T01
Gene Sequence

>MsG0580029511.01.T01

ATGGAAGATAAACCTGCTGCAGCAACAAGTGATGGCCAACAACCCATAAGATGTAAAGCTGCGGTTTGTCGCAAACCAGGTGAGCCACTGATTATTGAGGAGATCTTTGTGGCACCACCAATGCCACATGAAGCTAGGATTCGTATTATATGCACCTCTCTTTGTCACAGTGATATCATTTTTTGGAAAATGCAGGAGCCTCCTGCAATTTTTCCAAGGATACTGGGTCATGAGGCAATTGGGGTTGTGGAAAGTGTTGGAGAGGAAGTAACAGAAGTTACAAAGGGAGACATAGTTATCCCAATCTTCATGGCTGATTGTGAAGAGTGCATAGATTGCAAATCAACAAAGAGCAACCTTTGTTCAAAGTTTCCTTTTGATATTAAACCTTGGATGCTTAGATATGATACCACTAGATTCATTGATCTAAATGGAGAGATTATAAACCATTTCATATTTGTCTCTAGTTTTAGTGAGTATACTGTGGTTGACATTGCCAATCTACTCAAGATTGATCCAACAATTCCTCCCAACAGGGCATGCCTCCTCAGTTGTGGTGTATCAACAGGGGTAGGTGCTGCATGGAAAACAGCAAATGTTGAACCGGGGTCGACAGTAGCTATTTTTGGACTCGGATGTATTGGATTAGCGGTGGCTGAAGGAGCTAGACTTTGTGGAGCAACTAGGATTATAGGTGTGGATATCAAGCCAGAAAAATTTGAAATTGCGAAGAAGTTTGGAGTCACAGACTTTGTAAATCCTGGAGAATTGGAAAACAAATCTGTGAGTCAGGTTATCATAGAGATGACTGATGGAGGAGCAGATTATTGCTTTGAATGTGTTGGTATGGCATCATTGGTGCATGAAGCATATGCTTCATGTAGAAAGGGTTGGGGAAAAACAATTATGTTAGGAGTGGACAAGCCAGGATCTAAGTTGAGTATCAATAGTACTGATGTCCTTTTTCAAGGGAAGACTCTTATGGGGTCTATATTTGGAGGACTCAAACCCAAGTCTGATGTACCCATTCTTTTTAAACGCTACATGGACAAGGAACTCAATTTGGATGATTTTGTTACACATGAGGTGGAATTTAAAGACATCAACAAAGCTTTTGATTTGTTGACAAAAGGAGAGTGTCTTCGGTGTGTGATTTGGATGGACAAATGA
Protein sequence

>MsG0580029511.01.T01

MEDKPAAATSDGQQPIRCKAAVCRKPGEPLIIEEIFVAPPMPHEARIRIICTSLCHSDIIFWKMQEPPAIFPRILGHEAIGVVESVGEEVTEVTKGDIVIPIFMADCEECIDCKSTKSNLCSKFPFDIKPWMLRYDTTRFIDLNGEIINHFIFVSSFSEYTVVDIANLLKIDPTIPPNRACLLSCGVSTGVGAAWKTANVEPGSTVAIFGLGCIGLAVAEGARLCGATRIIGVDIKPEKFEIAKKFGVTDFVNPGELENKSVSQVIIEMTDGGADYCFECVGMASLVHEAYASCRKGWGKTIMLGVDKPGSKLSINSTDVLFQGKTLMGSIFGGLKPKSDVPILFKRYMDKELNLDDFVTHEVEFKDINKAFDLLTKGECLRCVIWMDK*