AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580027124.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027124.01.T01 MTR_6g069050 88.482 382 9 2 1 382 36 382 0.0 694
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 91 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCCATTTGGTTATCATTT+AGG 0.085330 5:-54042458 None:intergenic
TTCCATTTGGTTATCATTTA+GGG 0.185581 5:-54042457 None:intergenic
ATACTGTCTTCTGCAGCTTT+AGG 0.222188 5:+54038782 MsG0580027124.01.T01:CDS
AAGATCTATACATGGTGATA+TGG 0.254342 5:+54043380 MsG0580027124.01.T01:CDS
TACTGTCTTCTGCAGCTTTA+GGG 0.281515 5:+54038783 MsG0580027124.01.T01:CDS
AGGCTATCGCATCCCGTCTT+TGG 0.286432 5:+54040175 MsG0580027124.01.T01:CDS
ATAAACTCAATCCTTGCTTT+TGG 0.315787 5:+54043687 MsG0580027124.01.T01:CDS
TGTTGGGATGCTGTTGTAGA+TGG 0.321829 5:+54043450 MsG0580027124.01.T01:CDS
CCAACGGTTGTGGGTGCATT+AGG 0.322070 5:+54039979 MsG0580027124.01.T01:CDS
ATTCTTCTCTTCCTTTCCCT+TGG 0.330943 5:-54043608 None:intergenic
GAATGAATGGAGGGGAAAAT+TGG 0.340413 5:+54043627 MsG0580027124.01.T01:CDS
GAATCATTCCTTTGTTCTCT+TGG 0.340769 5:+54040001 MsG0580027124.01.T01:CDS
TTGTCAGCATAAAGACAAAA+TGG 0.347742 5:-54043653 None:intergenic
TTCTTCTCTTCCTTTCCCTT+GGG 0.352260 5:-54043607 None:intergenic
CTTGATGCATGTAAGAGAAT+TGG 0.384957 5:+54039943 MsG0580027124.01.T01:CDS
AGGACTTCCATGCATGTAAC+TGG 0.389010 5:+54042385 MsG0580027124.01.T01:CDS
GCATCTTCTTGTCATGTGTT+TGG 0.389414 5:+54043414 MsG0580027124.01.T01:CDS
GGAATGCAAAGGTTTAATCT+TGG 0.409670 5:+54038749 None:intergenic
AGTGATGCTTTGTGCTGGTT+TGG 0.410753 5:+54040435 MsG0580027124.01.T01:CDS
GAAAGGAAGAGAAGAATGAA+TGG 0.421569 5:+54043614 MsG0580027124.01.T01:CDS
CCTTTCCCTTGGGTAAGCTA+AGG 0.427224 5:-54043597 None:intergenic
TTGGGTAAGCTAAGGGTGCC+TGG 0.428226 5:-54043589 None:intergenic
TGACACTAAACTTGCTCCTT+GGG 0.428303 5:+54043745 MsG0580027124.01.T01:CDS
TGGTCATACTCACTTCTGTT+GGG 0.431860 5:+54043434 MsG0580027124.01.T01:CDS
GACAAAGAGGAGGACATAAC+AGG 0.438405 5:+54040155 MsG0580027124.01.T01:CDS
TTTAGTGTCATGAGGTGTCC+TGG 0.442522 5:-54043732 None:intergenic
CTTTCCCTTGGGTAAGCTAA+GGG 0.443118 5:-54043596 None:intergenic
TCTCCTGTATCATTTCCATT+TGG 0.443236 5:-54042470 None:intergenic
TTCCTGGGAATCATGACCTT+TGG 0.446678 5:+54039005 MsG0580027124.01.T01:CDS
TGGTGGGTTGCGTGTGTTTG+TGG 0.453301 5:+54038811 MsG0580027124.01.T01:CDS
AGAGACAAATCCAACGGTTG+TGG 0.457003 5:+54039969 MsG0580027124.01.T01:CDS
ATGACACTAAACTTGCTCCT+TGG 0.457959 5:+54043744 MsG0580027124.01.T01:CDS
ATCTCCATTTGAAAGTCCAT+TGG 0.473637 5:-54042409 None:intergenic
TTGGTCATACTCACTTCTGT+TGG 0.478544 5:+54043433 MsG0580027124.01.T01:CDS
TTTGTCATCTGTGAATTATA+AGG 0.479499 5:+54038883 MsG0580027124.01.T01:CDS
TAACCAAATGGAAATGATAC+AGG 0.480184 5:+54042467 MsG0580027124.01.T01:CDS
CAGCTTTAGGGGACACTGGT+GGG 0.480782 5:+54038795 MsG0580027124.01.T01:CDS
TGGCCCAATGGACTTTCAAA+TGG 0.484256 5:+54042405 MsG0580027124.01.T01:CDS
CCTGGGAACAAAGTGGGAAA+AGG 0.489843 5:-54042520 None:intergenic
AGATCTATACATGGTGATAT+GGG 0.493669 5:+54043381 MsG0580027124.01.T01:CDS
TCTCCATTTGAAAGTCCATT+GGG 0.509210 5:-54042408 None:intergenic
GCAGCTTTAGGGGACACTGG+TGG 0.509483 5:+54038794 MsG0580027124.01.T01:CDS
GTGAAAGTGATGCTTTGTGC+TGG 0.509846 5:+54040430 MsG0580027124.01.T01:CDS
TGCCCTAAATGATAACCAAA+TGG 0.511234 5:+54042455 MsG0580027124.01.T01:CDS
TCGCATCCCGTCTTTGGAGA+TGG 0.521521 5:+54040181 MsG0580027124.01.T01:CDS
TTCACAGAGCTTTGACAAAG+AGG 0.523921 5:+54040142 MsG0580027124.01.T01:intron
AAGAACTTTGTCCAGAAAAG+AGG 0.533211 5:+54043298 MsG0580027124.01.T01:CDS
TGACCTTTGGTGTCGTCGCG+AGG 0.538385 5:+54039018 MsG0580027124.01.T01:CDS
GGAAGAGAAGAATGAATGGA+GGG 0.543857 5:+54043618 MsG0580027124.01.T01:CDS
GATGATGTCCTTCTTGTGGC+TGG 0.544144 5:+54038905 MsG0580027124.01.T01:CDS
GAGACAAATCCAACGGTTGT+GGG 0.545127 5:+54039970 MsG0580027124.01.T01:CDS
CACCAAAGGTCATGATTCCC+AGG 0.550434 5:-54039007 None:intergenic
ACATAATTGCAGGTATGTCC+AGG 0.550524 5:+54043571 MsG0580027124.01.T01:intron
CCTAATGCACCCACAACCGT+TGG 0.552291 5:-54039979 None:intergenic
TCTGCAGCTTTAGGGGACAC+TGG 0.556415 5:+54038791 MsG0580027124.01.T01:CDS
AGGAAGAGAAGAATGAATGG+AGG 0.557259 5:+54043617 MsG0580027124.01.T01:CDS
TTAGTGTCATGAGGTGTCCT+GGG 0.559861 5:-54043731 None:intergenic
CATGCATGTAACTGGCCCAA+TGG 0.560700 5:+54042393 MsG0580027124.01.T01:CDS
ATGCTGTTGTAGATGGCATA+AGG 0.561555 5:+54043457 MsG0580027124.01.T01:CDS
ACATGGTGATATGGGAAGGA+AGG 0.563356 5:+54043389 MsG0580027124.01.T01:CDS
GCTGCAATTATGGAATGCAA+AGG 0.579384 5:+54038738 None:intergenic
TTGTAAAATCTGGCTACCCA+AGG 0.582209 5:-54043761 None:intergenic
TAGTCACCATCTCCAAAGAC+GGG 0.582917 5:-54040187 None:intergenic
GAAGAGAAGAATGAATGGAG+GGG 0.586636 5:+54043619 MsG0580027124.01.T01:CDS
ATTATTACTCTGTCAATCCC+AGG 0.588216 5:+54043714 MsG0580027124.01.T01:CDS
TGATGAGAATTTGAAGTGGG+TGG 0.589361 5:+54038856 MsG0580027124.01.T01:CDS
GACCTTTGGTGTCGTCGCGA+GGG 0.591054 5:+54039019 MsG0580027124.01.T01:CDS
TTTGTTCTCTTGGTACCATG+AGG 0.592704 5:+54040011 MsG0580027124.01.T01:CDS
TAAGGATGATGTCCTTCTTG+TGG 0.593180 5:+54038901 MsG0580027124.01.T01:CDS
GATCTTATTCGATCTTCAAG+AGG 0.594801 5:-54043363 None:intergenic
AGGCACCCTTAGCTTACCCA+AGG 0.594816 5:+54043591 MsG0580027124.01.T01:CDS
CAACATCACCAGCCACAAGA+AGG 0.597011 5:-54038913 None:intergenic
CTATACATGGTGATATGGGA+AGG 0.597645 5:+54043385 MsG0580027124.01.T01:CDS
ACTGTCTTCTGCAGCTTTAG+GGG 0.599299 5:+54038784 MsG0580027124.01.T01:CDS
ATAGTCACCATCTCCAAAGA+CGG 0.599612 5:-54040188 None:intergenic
GTCCCTCGCGACGACACCAA+AGG 0.601344 5:-54039021 None:intergenic
CCTTAGCTTACCCAAGGGAA+AGG 0.601574 5:+54043597 MsG0580027124.01.T01:CDS
ATCTTATTCGATCTTCAAGA+GGG 0.604887 5:-54043362 None:intergenic
CATTGGGCCAGTTACATGCA+TGG 0.607313 5:-54042392 None:intergenic
TAATTACCTGGGAACAAAGT+GGG 0.614155 5:-54042526 None:intergenic
TAATAATCAGACCAAAAGCA+AGG 0.627954 5:-54043698 None:intergenic
ACAGAGCTTTGACAAAGAGG+AGG 0.632307 5:+54040145 MsG0580027124.01.T01:intron
ATCAAAATATAAAGAGAGCG+AGG 0.643349 5:-54042433 None:intergenic
TTATGATGAGAATTTGAAGT+GGG 0.657132 5:+54038853 MsG0580027124.01.T01:CDS
GGCACCCTTAGCTTACCCAA+GGG 0.671306 5:+54043592 MsG0580027124.01.T01:CDS
TTAATTACCTGGGAACAAAG+TGG 0.671646 5:-54042527 None:intergenic
GATCGAATAAGATCTATACA+TGG 0.671801 5:+54043372 MsG0580027124.01.T01:CDS
GGAGCAAGTTTAGTGTCATG+AGG 0.672138 5:-54043740 None:intergenic
TGGAGTAGAGACAAATCCAA+CGG 0.675434 5:+54039963 MsG0580027124.01.T01:CDS
ATTATGATGAGAATTTGAAG+TGG 0.681715 5:+54038852 MsG0580027124.01.T01:CDS
TCATGGTACCAAGAGAACAA+AGG 0.703969 5:-54040009 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACTCATTTTTTTAAAAAAA+TGG - Chr5:54041760-54041779 None:intergenic 10.0%
!!! ACTTTTCTATATATTAATAT+CGG - Chr5:54043065-54043084 None:intergenic 10.0%
!! AAATATATAGTAAAACCTAA+TGG + Chr5:54040553-54040572 MsG0580027124.01.T01:intron 15.0%
!! ACATGAGAATTATTAAAATT+TGG - Chr5:54042255-54042274 None:intergenic 15.0%
!! ATGTAAAATATGAAGAAAAT+AGG - Chr5:54039505-54039524 None:intergenic 15.0%
!! CATGAGAATTATTAAAATTT+GGG - Chr5:54042254-54042273 None:intergenic 15.0%
!! GAAAAAAAACAAATATAAGA+AGG - Chr5:54042353-54042372 None:intergenic 15.0%
!! TAACAAAACTGTTAATTATT+TGG + Chr5:54041055-54041074 MsG0580027124.01.T01:intron 15.0%
!! TAATCTAATTCAAAGTTATT+GGG - Chr5:54040627-54040646 None:intergenic 15.0%
!!! AAAATCACTTTTTCATTTTT+AGG - Chr5:54041919-54041938 None:intergenic 15.0%
!!! ATAAAATTATTTTGAGACTA+TGG - Chr5:54042174-54042193 None:intergenic 15.0%
!!! CTCAAAATAATTTTATAAGT+GGG + Chr5:54042178-54042197 MsG0580027124.01.T01:intron 15.0%
!!! TAAAATTATTTTGAGACTAT+GGG - Chr5:54042173-54042192 None:intergenic 15.0%
!!! TATATTTGTTTTTTTTCCTT+AGG + Chr5:54042356-54042375 MsG0580027124.01.T01:intron 15.0%
!!! TCTCAAAATAATTTTATAAG+TGG + Chr5:54042177-54042196 MsG0580027124.01.T01:intron 15.0%
!! AAATTGTATATAGTCATGTT+TGG + Chr5:54042719-54042738 MsG0580027124.01.T01:intron 20.0%
!! AATGTAAATCCTAGTATTTA+TGG + Chr5:54041178-54041197 MsG0580027124.01.T01:intron 20.0%
!! ATAATCAACATAATGCAATA+TGG - Chr5:54039084-54039103 None:intergenic 20.0%
!! CTAATCTAATTCAAAGTTAT+TGG - Chr5:54040628-54040647 None:intergenic 20.0%
!! CTTAACAAAAGATAAAACAA+AGG + Chr5:54039621-54039640 MsG0580027124.01.T01:intron 20.0%
!! GGAAAATAAAAAAATACCAT+AGG - Chr5:54042332-54042351 None:intergenic 20.0%
!! TACTAACTTAGAAACTTAAA+GGG + Chr5:54040587-54040606 MsG0580027124.01.T01:intron 20.0%
!! TAGAACCAATACAATAATAA+GGG + Chr5:54041154-54041173 MsG0580027124.01.T01:intron 20.0%
!! TTAATTCCATGAATGTATTT+AGG + Chr5:54039479-54039498 MsG0580027124.01.T01:intron 20.0%
!! TTAGAACCAATACAATAATA+AGG + Chr5:54041153-54041172 MsG0580027124.01.T01:intron 20.0%
!! TTGAAGACTACTAAATTTAT+AGG + Chr5:54040975-54040994 MsG0580027124.01.T01:intron 20.0%
!! TTTATGCTAATTTCTGTTAT+GGG + Chr5:54040313-54040332 MsG0580027124.01.T01:intron 20.0%
!!! ATCAATCAACATTTTTTGAA+TGG - Chr5:54040234-54040253 None:intergenic 20.0%
!!! ATCTATTTTTTTCAACAACA+AGG - Chr5:54041805-54041824 None:intergenic 20.0%
!!! ATTCAAAAAATGTTGATTGA+TGG + Chr5:54040233-54040252 MsG0580027124.01.T01:intron 20.0%
!!! CTGAAGATTAGTTTTTAATT+GGG + Chr5:54041252-54041271 MsG0580027124.01.T01:intron 20.0%
!!! CTTTGTTTTATCTTTTGTTA+AGG - Chr5:54039623-54039642 None:intergenic 20.0%
!!! TCATTTTTAAGTGTTTGTTT+AGG - Chr5:54042109-54042128 None:intergenic 20.0%
!!! TCTGAAGATTAGTTTTTAAT+TGG + Chr5:54041251-54041270 MsG0580027124.01.T01:intron 20.0%
!!! TGAAAAAAATCTGAAACAAA+CGG + Chr5:54042146-54042165 MsG0580027124.01.T01:intron 20.0%
!!! TTTAAGCTTTTTATTTGTTC+TGG + Chr5:54043238-54043257 MsG0580027124.01.T01:intron 20.0%
!!! TTTCATTTTTAGGTTTGTTT+AGG - Chr5:54041909-54041928 None:intergenic 20.0%
!!! TTTCTGTTGGTTTTAATTTA+AGG + Chr5:54039536-54039555 MsG0580027124.01.T01:intron 20.0%
! AAAAAAATACCATAGGTGTT+AGG - Chr5:54042325-54042344 None:intergenic 25.0%
! AATCATAACTTCAGTACTTT+AGG - Chr5:54043511-54043530 None:intergenic 25.0%
! AATTTAGGCTCAAAGTTATT+CGG + Chr5:54040758-54040777 MsG0580027124.01.T01:intron 25.0%
! ATAACACATTATTTATCTCG+AGG - Chr5:54043207-54043226 None:intergenic 25.0%
! ATACAACAAATGGTACATAA+AGG - Chr5:54043536-54043555 None:intergenic 25.0%
! ATATTCATTCTCTCAGATTT+AGG - Chr5:54040942-54040961 None:intergenic 25.0%
! ATGATAGGTACAGAAATTAA+TGG + Chr5:54040875-54040894 MsG0580027124.01.T01:intron 25.0%
! ATTAAAACCAACAGAAAATC+AGG - Chr5:54039533-54039552 None:intergenic 25.0%
! ATTATGATGAGAATTTGAAG+TGG + Chr5:54038852-54038871 MsG0580027124.01.T01:CDS 25.0%
! CATTACCCTTATTATTGTAT+TGG - Chr5:54041162-54041181 None:intergenic 25.0%
! CCAATAAAACTTAGAAATTG+GGG - Chr5:54041327-54041346 None:intergenic 25.0%
! CCCAATAAAACTTAGAAATT+GGG - Chr5:54041328-54041347 None:intergenic 25.0%
! CTACTAACTTAGAAACTTAA+AGG + Chr5:54040586-54040605 MsG0580027124.01.T01:intron 25.0%
! CTTTATGCTAATTTCTGTTA+TGG + Chr5:54040312-54040331 MsG0580027124.01.T01:intron 25.0%
! GAAATTCTTGAGAAAATGAT+AGG + Chr5:54040860-54040879 MsG0580027124.01.T01:intron 25.0%
! TATACAGAACCATAAATACT+AGG - Chr5:54041190-54041209 None:intergenic 25.0%
! TATTCATTCTCTCAGATTTA+GGG - Chr5:54040941-54040960 None:intergenic 25.0%
! TCAATGACATTACATAATAG+AGG + Chr5:54040522-54040541 MsG0580027124.01.T01:intron 25.0%
! TTAAAACCAACAGAAAATCA+GGG - Chr5:54039532-54039551 None:intergenic 25.0%
! TTCCATTTGGTTATCATTTA+GGG - Chr5:54042460-54042479 None:intergenic 25.0%
! TTGAGTTATTTAAGCTTATC+CGG - Chr5:54039759-54039778 None:intergenic 25.0%
! TTTCCATTTGGTTATCATTT+AGG - Chr5:54042461-54042480 None:intergenic 25.0%
! TTTGTCATCTGTGAATTATA+AGG + Chr5:54038883-54038902 MsG0580027124.01.T01:CDS 25.0%
!! AAGTATTGCAACAAAGTTTA+GGG - Chr5:54039857-54039876 None:intergenic 25.0%
!! ATCCTAATAGCTTTTCATTT+AGG + Chr5:54041839-54041858 MsG0580027124.01.T01:intron 25.0%
!! CCTAATAGCTTTTCATTTTA+GGG + Chr5:54042042-54042061 MsG0580027124.01.T01:intron 25.0%
!! GAAAAAAATCTGAAACAAAC+GGG + Chr5:54042147-54042166 MsG0580027124.01.T01:intron 25.0%
!! TAAGTTTTTGTAAGCTATCA+TGG + Chr5:54042856-54042875 MsG0580027124.01.T01:intron 25.0%
!! TCCTAATAGCTTTTCATTTA+GGG + Chr5:54041840-54041859 MsG0580027124.01.T01:intron 25.0%
!! TCCTAATAGCTTTTCATTTT+AGG + Chr5:54042041-54042060 MsG0580027124.01.T01:intron 25.0%
!! TTATGATGAGAATTTGAAGT+GGG + Chr5:54038853-54038872 MsG0580027124.01.T01:CDS 25.0%
!! TTTTGTTAACAGTTACTACT+GGG - Chr5:54041043-54041062 None:intergenic 25.0%
!!! AAAGTATTGCAACAAAGTTT+AGG - Chr5:54039858-54039877 None:intergenic 25.0%
!!! AATCAAAAGTGTTTCTTTAG+GGG + Chr5:54040093-54040112 MsG0580027124.01.T01:intron 25.0%
!!! AATGCATTTTAGTGTTTATG+AGG - Chr5:54043151-54043170 None:intergenic 25.0%
!!! AATGGATTTTTATGCATAGT+AGG - Chr5:54041742-54041761 None:intergenic 25.0%
!!! ATGTGTGAATTTTAACTTTC+AGG + Chr5:54040342-54040361 MsG0580027124.01.T01:intron 25.0%
!!! ATTGTATTGGTTCTAACAAT+AGG - Chr5:54041149-54041168 None:intergenic 25.0%
!!! CCCAATTTCTAAGTTTTATT+GGG + Chr5:54041325-54041344 MsG0580027124.01.T01:intron 25.0%
!!! CTTTTAAAGATCAGTCTAAT+TGG - Chr5:54040835-54040854 None:intergenic 25.0%
!!! CTTTTTATTTGTTCTGGTTA+TGG + Chr5:54043244-54043263 MsG0580027124.01.T01:intron 25.0%
!!! GAATCAAAAGTGTTTCTTTA+GGG + Chr5:54040092-54040111 MsG0580027124.01.T01:intron 25.0%
!!! TGAATCAAAAGTGTTTCTTT+AGG + Chr5:54040091-54040110 MsG0580027124.01.T01:intron 25.0%
!!! TGGTTTTAATTTAAGGTGAA+GGG + Chr5:54039543-54039562 MsG0580027124.01.T01:intron 25.0%
!!! TGTGTGAATTTTAACTTTCA+GGG + Chr5:54040343-54040362 MsG0580027124.01.T01:intron 25.0%
!!! TTGCTTTTTCTTGTAAAATC+TGG - Chr5:54043774-54043793 None:intergenic 25.0%
!!! TTGGTTTTAATTTAAGGTGA+AGG + Chr5:54039542-54039561 MsG0580027124.01.T01:intron 25.0%
AACCATCTTAGAATTTGAGT+TGG - Chr5:54041512-54041531 None:intergenic 30.0%
AAGATCTATACATGGTGATA+TGG + Chr5:54043380-54043399 MsG0580027124.01.T01:CDS 30.0%
AATAGGCCTAAATACATTCA+TGG - Chr5:54039488-54039507 None:intergenic 30.0%
AATTGTCAAATACTACACTC+GGG - Chr5:54039160-54039179 None:intergenic 30.0%
ACCCTAAATGAAAAGCTATT+AGG - Chr5:54041844-54041863 None:intergenic 30.0%
ACTTAACGACATAAACTTGT+GGG + Chr5:54042607-54042626 MsG0580027124.01.T01:intron 30.0%
AGACCATATCTCATACAATA+AGG - Chr5:54041234-54041253 None:intergenic 30.0%
AGAGAATGAATATGATGCAA+TGG + Chr5:54040949-54040968 MsG0580027124.01.T01:intron 30.0%
AGATCTATACATGGTGATAT+GGG + Chr5:54043381-54043400 MsG0580027124.01.T01:CDS 30.0%
AGGTGTATAAAATCCAACAT+TGG + Chr5:54043114-54043133 MsG0580027124.01.T01:intron 30.0%
AGTATTGCAACAAAGTTTAG+GGG - Chr5:54039856-54039875 None:intergenic 30.0%
ATAAAACTTAGAAATTGGGG+CGG - Chr5:54041324-54041343 None:intergenic 30.0%
ATCAAAATATAAAGAGAGCG+AGG - Chr5:54042436-54042455 None:intergenic 30.0%
ATCTTATTCGATCTTCAAGA+GGG - Chr5:54043365-54043384 None:intergenic 30.0%
ATTTATCAGAGTTTATCCAC+TGG - Chr5:54043010-54043029 None:intergenic 30.0%
CAATTGTCAAATACTACACT+CGG - Chr5:54039161-54039180 None:intergenic 30.0%
CACAATGTAAGTGTTTAACA+GGG + Chr5:54040999-54041018 MsG0580027124.01.T01:intron 30.0%
CATATCTCATACAATAAGGT+GGG - Chr5:54041230-54041249 None:intergenic 30.0%
CCATTTAGCAATACAACAAA+TGG - Chr5:54043546-54043565 None:intergenic 30.0%
CCCTAAAATGAAAAGCTATT+AGG - Chr5:54042045-54042064 None:intergenic 30.0%
CCTAAATTGAACTCTTGTAA+GGG - Chr5:54040746-54040765 None:intergenic 30.0%
CCTGAAAATGAGTTTATAAG+TGG + Chr5:54041439-54041458 MsG0580027124.01.T01:intron 30.0%
GATCGAATAAGATCTATACA+TGG + Chr5:54043372-54043391 MsG0580027124.01.T01:CDS 30.0%
GCCCAATAAAACTTAGAAAT+TGG - Chr5:54041329-54041348 None:intergenic 30.0%
GGAGTTATTTATTCCAATGT+TGG - Chr5:54043130-54043149 None:intergenic 30.0%
GTACTTTAGGTATGAAAGTT+TGG - Chr5:54043498-54043517 None:intergenic 30.0%
TAACCAAATGGAAATGATAC+AGG + Chr5:54042467-54042486 MsG0580027124.01.T01:CDS 30.0%
TAATAATCAGACCAAAAGCA+AGG - Chr5:54043701-54043720 None:intergenic 30.0%
TACTTAACGACATAAACTTG+TGG + Chr5:54042606-54042625 MsG0580027124.01.T01:intron 30.0%
TAGTATTTGACAATTGTCCA+AGG + Chr5:54039165-54039184 MsG0580027124.01.T01:intron 30.0%
TCACAATGTAAGTGTTTAAC+AGG + Chr5:54040998-54041017 MsG0580027124.01.T01:intron 30.0%
TGAGTTGTTAACTTAGGTTT+AGG - Chr5:54040672-54040691 None:intergenic 30.0%
TTACTGTGTGTTAACAATGT+AGG + Chr5:54040461-54040480 MsG0580027124.01.T01:intron 30.0%
TTGTCAGCATAAAGACAAAA+TGG - Chr5:54043656-54043675 None:intergenic 30.0%
TTTCAGAGAGAATAACAAAC+AGG + Chr5:54040485-54040504 MsG0580027124.01.T01:intron 30.0%
! AAAGCTTGAGTTGTTAACTT+AGG - Chr5:54040678-54040697 None:intergenic 30.0%
! AACATGTTTTCTATGTTCCT+GGG + Chr5:54038990-54039009 MsG0580027124.01.T01:CDS 30.0%
! ACCATCTTAGAATTTGAGTT+GGG - Chr5:54041511-54041530 None:intergenic 30.0%
! AGACTGATCTTTAAAAGTGT+CGG + Chr5:54040838-54040857 MsG0580027124.01.T01:intron 30.0%
! ATAAACTCAATCCTTGCTTT+TGG + Chr5:54043687-54043706 MsG0580027124.01.T01:CDS 30.0%
! ATAGTCTATCTAAGATCTAC+TGG + Chr5:54041534-54041553 MsG0580027124.01.T01:intron 30.0%
! CAACAGTAAGCAACATTTTT+AGG - Chr5:54040409-54040428 None:intergenic 30.0%
! CCACTTATAAACTCATTTTC+AGG - Chr5:54041442-54041461 None:intergenic 30.0%
! TAGAATAACATCCTCTTTTC+TGG - Chr5:54043312-54043331 None:intergenic 30.0%
! TAGTCTATCTAAGATCTACT+GGG + Chr5:54041535-54041554 MsG0580027124.01.T01:intron 30.0%
! TGCTTGGTATATGTTTTCTT+CGG + Chr5:54042646-54042665 MsG0580027124.01.T01:intron 30.0%
! TTGACACAAACATAGCTTTT+AGG + Chr5:54039104-54039123 MsG0580027124.01.T01:intron 30.0%
!! CCATTTGTTGTATTGCTAAA+TGG + Chr5:54043543-54043562 MsG0580027124.01.T01:intron 30.0%
!! CCCCAATTTCTAAGTTTTAT+TGG + Chr5:54041324-54041343 MsG0580027124.01.T01:intron 30.0%
!! CCTAATTTCTAAAATGAGTG+AGG + Chr5:54042687-54042706 MsG0580027124.01.T01:intron 30.0%
!! CCTCACTCATTTTAGAAATT+AGG - Chr5:54042690-54042709 None:intergenic 30.0%
!! GGTCTGAACCAATTATTTTT+GGG - Chr5:54043344-54043363 None:intergenic 30.0%
!! GTTTTGTTAACAGTTACTAC+TGG - Chr5:54041044-54041063 None:intergenic 30.0%
!!! AAGGTTTTAAATTGCGGTAA+CGG - Chr5:54039340-54039359 None:intergenic 30.0%
!!! CATTTTTTGAATGGCTTACT+AGG - Chr5:54040225-54040244 None:intergenic 30.0%
!!! CGATGAAAGGTTTTAAATTG+CGG - Chr5:54039346-54039365 None:intergenic 30.0%
!!! TCGAATTGCAGCTATTTTTT+CGG + Chr5:54042558-54042577 MsG0580027124.01.T01:intron 30.0%
!!! TTTTTTTCCTTAGGCTTGTA+AGG + Chr5:54042365-54042384 MsG0580027124.01.T01:intron 30.0%
AAACAAGCTTCTATGGCTTA+TGG + Chr5:54043036-54043055 MsG0580027124.01.T01:intron 35.0%
AAACACTCACAAGACTGTTT+GGG - Chr5:54039730-54039749 None:intergenic 35.0%
AAATCGTTCACATTACAAGC+CGG + Chr5:54042203-54042222 MsG0580027124.01.T01:intron 35.0%
AACTTCTTTCCTAACACCTA+TGG + Chr5:54042313-54042332 MsG0580027124.01.T01:intron 35.0%
AAGAACTTTGTCCAGAAAAG+AGG + Chr5:54043298-54043317 MsG0580027124.01.T01:CDS 35.0%
AAGCTATCATGGAGAACTTA+TGG + Chr5:54042867-54042886 MsG0580027124.01.T01:intron 35.0%
AATAAGACTACTGCGATGAA+AGG - Chr5:54039359-54039378 None:intergenic 35.0%
AATGGAGTTGACATAATTGC+AGG + Chr5:54043561-54043580 MsG0580027124.01.T01:intron 35.0%
ACCAATTAGTTGTTGAGAGT+TGG - Chr5:54042586-54042605 None:intergenic 35.0%
ACTCTATATCTCATCCAATG+TGG - Chr5:54041620-54041639 None:intergenic 35.0%
AGAAATTTGCAGTGTATTGC+AGG - Chr5:54040789-54040808 None:intergenic 35.0%
AGTTATTTAAGCTTATCCGG+TGG - Chr5:54039756-54039775 None:intergenic 35.0%
ATCTCCATTTGAAAGTCCAT+TGG - Chr5:54042412-54042431 None:intergenic 35.0%
ATTATTACTCTGTCAATCCC+AGG + Chr5:54043714-54043733 MsG0580027124.01.T01:CDS 35.0%
CATTAGTTCCTCAAAGATTG+AGG + Chr5:54039384-54039403 MsG0580027124.01.T01:intron 35.0%
CCAAAGCTCCCAAAAATAAT+TGG + Chr5:54043333-54043352 MsG0580027124.01.T01:CDS 35.0%
CCACCTTATTGTATGAGATA+TGG + Chr5:54041228-54041247 MsG0580027124.01.T01:intron 35.0%
CCATATCTCATACAATAAGG+TGG - Chr5:54041231-54041250 None:intergenic 35.0%
CCCTTACAAGAGTTCAATTT+AGG + Chr5:54040743-54040762 MsG0580027124.01.T01:intron 35.0%
CGAAGAATTGCAGTAAAATC+CGG - Chr5:54039288-54039307 None:intergenic 35.0%
CTAACTCAACCATACAAAAC+CGG - Chr5:54042225-54042244 None:intergenic 35.0%
CTCATACAATCATGTCGTAT+GGG - Chr5:54043090-54043109 None:intergenic 35.0%
CTCTATATCTCATCCAATGT+GGG - Chr5:54041619-54041638 None:intergenic 35.0%
CTTGATGCATGTAAGAGAAT+TGG + Chr5:54039943-54039962 MsG0580027124.01.T01:CDS 35.0%
GAAAGGAAGAGAAGAATGAA+TGG + Chr5:54043614-54043633 MsG0580027124.01.T01:CDS 35.0%
GAAATTTGCAGTGTATTGCA+GGG - Chr5:54040788-54040807 None:intergenic 35.0%
GAACGACAGATTAATTACCT+GGG - Chr5:54042540-54042559 None:intergenic 35.0%
GAATCATTCCTTTGTTCTCT+TGG + Chr5:54040001-54040020 MsG0580027124.01.T01:CDS 35.0%
GACATGATTGTATGAGGAAA+AGG + Chr5:54043094-54043113 MsG0580027124.01.T01:intron 35.0%
GAGAACTTATGGAAATAAGC+TGG + Chr5:54042878-54042897 MsG0580027124.01.T01:intron 35.0%
GATCTTATTCGATCTTCAAG+AGG - Chr5:54043366-54043385 None:intergenic 35.0%
GCAATATGGACAGAATGATA+AGG - Chr5:54039070-54039089 None:intergenic 35.0%
GCACATGGTATGAAAGATTA+AGG - Chr5:54040066-54040085 None:intergenic 35.0%
GCCTAAATTGAACTCTTGTA+AGG - Chr5:54040747-54040766 None:intergenic 35.0%
GGTGATTACTTCTGTAATGT+CGG + Chr5:54040032-54040051 MsG0580027124.01.T01:intron 35.0%
TAAACACTCACAAGACTGTT+TGG - Chr5:54039731-54039750 None:intergenic 35.0%
TAATCTTTCATACCATGTGC+TGG + Chr5:54040066-54040085 MsG0580027124.01.T01:intron 35.0%
TAATTACCTGGGAACAAAGT+GGG - Chr5:54042529-54042548 None:intergenic 35.0%
TAGAAACTTAAAGGGCCAAA+TGG + Chr5:54040595-54040614 MsG0580027124.01.T01:intron 35.0%
TCAATCCAAACAAGCTTCTA+TGG + Chr5:54043029-54043048 MsG0580027124.01.T01:intron 35.0%
TCCAACTCTCAACAACTAAT+TGG + Chr5:54042582-54042601 MsG0580027124.01.T01:intron 35.0%
TCTCCATTTGAAAGTCCATT+GGG - Chr5:54042411-54042430 None:intergenic 35.0%
TCTCCTGTATCATTTCCATT+TGG - Chr5:54042473-54042492 None:intergenic 35.0%
TGCCCTAAATGATAACCAAA+TGG + Chr5:54042455-54042474 MsG0580027124.01.T01:CDS 35.0%
TGTCATTGATAAAACCCTAG+CGG - Chr5:54040511-54040530 None:intergenic 35.0%
TTAATTACCTGGGAACAAAG+TGG - Chr5:54042530-54042549 None:intergenic 35.0%
TTACAGAAGTAATCACCTCA+TGG - Chr5:54040029-54040048 None:intergenic 35.0%
TTCAATCACATGTCAAGTCA+AGG - Chr5:54040714-54040733 None:intergenic 35.0%
! AAAGTCCCGTGTTTAAAATC+TGG + Chr5:54039196-54039215 MsG0580027124.01.T01:intron 35.0%
! ACCCAACTCAAATTCTAAGA+TGG + Chr5:54041507-54041526 MsG0580027124.01.T01:intron 35.0%
! AGTAGTTAGTCTAGTCCATT+AGG - Chr5:54040571-54040590 None:intergenic 35.0%
! ATAAGCCATAGAAGCTTGTT+TGG - Chr5:54043037-54043056 None:intergenic 35.0%
! CGGGACTTTATTTAAAACCT+TGG - Chr5:54039185-54039204 None:intergenic 35.0%
! CGTCATCCAGATTTTAAACA+CGG - Chr5:54039205-54039224 None:intergenic 35.0%
! CTCAATCTTTGAGGAACTAA+TGG - Chr5:54039386-54039405 None:intergenic 35.0%
! GAACATGTTTTCTATGTTCC+TGG + Chr5:54038989-54039008 MsG0580027124.01.T01:CDS 35.0%
! GCTGATTTCATAAGCTATCA+TGG + Chr5:54039669-54039688 MsG0580027124.01.T01:intron 35.0%
! GGGTCTGAACCAATTATTTT+TGG - Chr5:54043345-54043364 None:intergenic 35.0%
! GTCATCCAGATTTTAAACAC+GGG - Chr5:54039204-54039223 None:intergenic 35.0%
! GTCTAATTGGCAGCATTTTA+TGG - Chr5:54040822-54040841 None:intergenic 35.0%
! TATTCAATGACCGTTTTGTG+TGG + Chr5:54043173-54043192 MsG0580027124.01.T01:intron 35.0%
!! AAAGTACAGTGTTGATTGCT+TGG + Chr5:54042630-54042649 MsG0580027124.01.T01:intron 35.0%
!! ACTTTTCAAGAGAATCAACC+TGG - Chr5:54039912-54039931 None:intergenic 35.0%
!! ATATGTTTTCTTCGGTGCAA+TGG + Chr5:54042654-54042673 MsG0580027124.01.T01:intron 35.0%
!! TTTTGATTCAATCCAGCACA+TGG - Chr5:54040081-54040100 None:intergenic 35.0%
!!! CCAATTATTTTTGGGAGCTT+TGG - Chr5:54043336-54043355 None:intergenic 35.0%
!!! GTTTTTGCTGATTTTTCTCC+AGG + Chr5:54039891-54039910 MsG0580027124.01.T01:intron 35.0%
AAATCTGGATGACGACATCA+AGG + Chr5:54039211-54039230 MsG0580027124.01.T01:intron 40.0%
ACATAATTGCAGGTATGTCC+AGG + Chr5:54043571-54043590 MsG0580027124.01.T01:intron 40.0%
ACATCCATCAAGCCTAAAAC+TGG - Chr5:54041389-54041408 None:intergenic 40.0%
ACATCTCTCACCTTACAAGT+CGG + Chr5:54041465-54041484 MsG0580027124.01.T01:intron 40.0%
AGATTTAGGGAAAGAGATGC+TGG - Chr5:54040928-54040947 None:intergenic 40.0%
AGGAAGAGAAGAATGAATGG+AGG + Chr5:54043617-54043636 MsG0580027124.01.T01:CDS 40.0%
AGTCCTTAATCAAGCACCAT+GGG - Chr5:54040279-54040298 None:intergenic 40.0%
ATACTGTCTTCTGCAGCTTT+AGG + Chr5:54038782-54038801 MsG0580027124.01.T01:CDS 40.0%
ATAGTCACCATCTCCAAAGA+CGG - Chr5:54040191-54040210 None:intergenic 40.0%
ATCATGCGCTTAATTTCCCA+TGG + Chr5:54040260-54040279 MsG0580027124.01.T01:intron 40.0%
ATGCTGTTGTAGATGGCATA+AGG + Chr5:54043457-54043476 MsG0580027124.01.T01:CDS 40.0%
ATGTCTCGACAATCACAAAG+TGG + Chr5:54039240-54039259 MsG0580027124.01.T01:intron 40.0%
ATTCTTCTCTTCCTTTCCCT+TGG - Chr5:54043611-54043630 None:intergenic 40.0%
CAAAGACACCTCAATCTTTG+AGG - Chr5:54039395-54039414 None:intergenic 40.0%
CCATACGACATGATTGTATG+AGG + Chr5:54043088-54043107 MsG0580027124.01.T01:intron 40.0%
CCTCATACAATCATGTCGTA+TGG - Chr5:54043091-54043110 None:intergenic 40.0%
CGAACGACAGATTAATTACC+TGG - Chr5:54042541-54042560 None:intergenic 40.0%
CTATACATGGTGATATGGGA+AGG + Chr5:54043385-54043404 MsG0580027124.01.T01:CDS 40.0%
GAAGAGAAGAATGAATGGAG+GGG + Chr5:54043619-54043638 MsG0580027124.01.T01:CDS 40.0%
GAATGAATGGAGGGGAAAAT+TGG + Chr5:54043627-54043646 MsG0580027124.01.T01:CDS 40.0%
GCATCTTCTTGTCATGTGTT+TGG + Chr5:54043414-54043433 MsG0580027124.01.T01:CDS 40.0%
GCGAGGGACAAAATTATGTA+AGG + Chr5:54039035-54039054 MsG0580027124.01.T01:intron 40.0%
GGAAGAGAAGAATGAATGGA+GGG + Chr5:54043618-54043637 MsG0580027124.01.T01:CDS 40.0%
GGTAACACAACCACACAAAA+CGG - Chr5:54043186-54043205 None:intergenic 40.0%
GTGTGTTAAGAATCCCACAT+TGG + Chr5:54041603-54041622 MsG0580027124.01.T01:intron 40.0%
TAAGGATGATGTCCTTCTTG+TGG + Chr5:54038901-54038920 MsG0580027124.01.T01:CDS 40.0%
TACTGTCTTCTGCAGCTTTA+GGG + Chr5:54038783-54038802 MsG0580027124.01.T01:CDS 40.0%
TAGTCCTTAATCAAGCACCA+TGG - Chr5:54040280-54040299 None:intergenic 40.0%
TCAAGCCTAAAACTGGACTT+TGG - Chr5:54041382-54041401 None:intergenic 40.0%
TCATGGTACCAAGAGAACAA+AGG - Chr5:54040012-54040031 None:intergenic 40.0%
TGGAGTAGAGACAAATCCAA+CGG + Chr5:54039963-54039982 MsG0580027124.01.T01:CDS 40.0%
TGGTCATACTCACTTCTGTT+GGG + Chr5:54043434-54043453 MsG0580027124.01.T01:CDS 40.0%
TTCTTCTCTTCCTTTCCCTT+GGG - Chr5:54043610-54043629 None:intergenic 40.0%
TTGGTCATACTCACTTCTGT+TGG + Chr5:54043433-54043452 MsG0580027124.01.T01:CDS 40.0%
TTGTAAAATCTGGCTACCCA+AGG - Chr5:54043764-54043783 None:intergenic 40.0%
TTTCCCATGGTGCTTGATTA+AGG + Chr5:54040273-54040292 MsG0580027124.01.T01:intron 40.0%
TTTGTTCTCTTGGTACCATG+AGG + Chr5:54040011-54040030 MsG0580027124.01.T01:CDS 40.0%
! ATGACACTAAACTTGCTCCT+TGG + Chr5:54043744-54043763 MsG0580027124.01.T01:CDS 40.0%
! ATTGCACCCTGATTTTCTGT+TGG + Chr5:54039523-54039542 MsG0580027124.01.T01:intron 40.0%
! CACAAAGTGGCTTGTGATTA+AGG + Chr5:54039253-54039272 MsG0580027124.01.T01:intron 40.0%
! TGACACTAAACTTGCTCCTT+GGG + Chr5:54043745-54043764 MsG0580027124.01.T01:CDS 40.0%
! TGATGAGAATTTGAAGTGGG+TGG + Chr5:54038856-54038875 MsG0580027124.01.T01:CDS 40.0%
! TTCACAGAGCTTTGACAAAG+AGG + Chr5:54040142-54040161 MsG0580027124.01.T01:intron 40.0%
! TTTCTTCGGTGCAATGGTAA+TGG + Chr5:54042660-54042679 MsG0580027124.01.T01:intron 40.0%
!! ACCTTACAAGTCGGTTTTGT+GGG + Chr5:54041474-54041493 MsG0580027124.01.T01:intron 40.0%
!! CATTACAAGCCGGTTTTGTA+TGG + Chr5:54042213-54042232 MsG0580027124.01.T01:intron 40.0%
!! CGGTTTTGTATGGTTGAGTT+AGG + Chr5:54042223-54042242 MsG0580027124.01.T01:intron 40.0%
!!! AAGTCCAGTTTTAGGCTTGA+TGG + Chr5:54041382-54041401 MsG0580027124.01.T01:intron 40.0%
!!! GTGTCTTTGTTTTAGTCGTC+TGG + Chr5:54039406-54039425 MsG0580027124.01.T01:intron 40.0%
AACGAGGAAAGCAGTAAGTC+TGG - Chr5:54039833-54039852 None:intergenic 45.0%
ACATGGTGATATGGGAAGGA+AGG + Chr5:54043389-54043408 MsG0580027124.01.T01:CDS 45.0%
AGAATAACAAACAGGCCGCT+AGG + Chr5:54040493-54040512 MsG0580027124.01.T01:intron 45.0%
AGAGACAAATCCAACGGTTG+TGG + Chr5:54039969-54039988 MsG0580027124.01.T01:CDS 45.0%
AGGACTTCCATGCATGTAAC+TGG + Chr5:54042385-54042404 MsG0580027124.01.T01:CDS 45.0%
ATATCCCTCACCTTACAAGC+CGG + Chr5:54041277-54041296 MsG0580027124.01.T01:intron 45.0%
ATCACAAGTGTTTGTGCCAG+TGG + Chr5:54042991-54043010 MsG0580027124.01.T01:intron 45.0%
ATGCTAGCATGCTTCTTCAC+AGG + Chr5:54043274-54043293 MsG0580027124.01.T01:intron 45.0%
ATGTGTTAAGAGTCCCGCAT+TGG + Chr5:54041405-54041424 MsG0580027124.01.T01:intron 45.0%
CAAACTCAACCCTGCAAAAC+CGG - Chr5:54041299-54041318 None:intergenic 45.0%
CAACAAAGTTTAGGGGAACG+AGG - Chr5:54039849-54039868 None:intergenic 45.0%
CTTAAAGGGCCAAATGGCAT+AGG + Chr5:54040601-54040620 MsG0580027124.01.T01:intron 45.0%
CTTGTGAGTGTTTATGCCAC+CGG + Chr5:54039737-54039756 MsG0580027124.01.T01:intron 45.0%
CTTTCCCTTGGGTAAGCTAA+GGG - Chr5:54043599-54043618 None:intergenic 45.0%
GAATAACAAACAGGCCGCTA+GGG + Chr5:54040494-54040513 MsG0580027124.01.T01:intron 45.0%
GACAAAGAGGAGGACATAAC+AGG + Chr5:54040155-54040174 MsG0580027124.01.T01:CDS 45.0%
GAGACAAATCCAACGGTTGT+GGG + Chr5:54039970-54039989 MsG0580027124.01.T01:CDS 45.0%
GCAATACAGACGTGCACTAA+AGG - Chr5:54039792-54039811 None:intergenic 45.0%
GGAGCAAGTTTAGTGTCATG+AGG - Chr5:54043743-54043762 None:intergenic 45.0%
GGATGGAGTGACCTGATAAT+GGG - Chr5:54041564-54041583 None:intergenic 45.0%
GTGAAAGTGATGCTTTGTGC+TGG + Chr5:54040430-54040449 MsG0580027124.01.T01:CDS 45.0%
GTTATTGGGCCTATGCCATT+TGG - Chr5:54040613-54040632 None:intergenic 45.0%
TACACTCGGGACTAAATCGA+GGG - Chr5:54039147-54039166 None:intergenic 45.0%
TAGTCACCATCTCCAAAGAC+GGG - Chr5:54040190-54040209 None:intergenic 45.0%
TGATCCGAATGGTCCGATAA+CGG - Chr5:54041355-54041374 None:intergenic 45.0%
TGGAAGTCCTTACAAGCCTA+AGG - Chr5:54042375-54042394 None:intergenic 45.0%
TGGATGGAGTGACCTGATAA+TGG - Chr5:54041565-54041584 None:intergenic 45.0%
TGTGTTAAGAGTCCCGCATT+GGG + Chr5:54041406-54041425 MsG0580027124.01.T01:intron 45.0%
TGTTGGGATGCTGTTGTAGA+TGG + Chr5:54043450-54043469 MsG0580027124.01.T01:CDS 45.0%
TTCCTGGGAATCATGACCTT+TGG + Chr5:54039005-54039024 MsG0580027124.01.T01:CDS 45.0%
TTTATTGGGCCACCCGTTAT+CGG + Chr5:54041339-54041358 MsG0580027124.01.T01:intron 45.0%
! ACAGAGCTTTGACAAAGAGG+AGG + Chr5:54040145-54040164 MsG0580027124.01.T01:intron 45.0%
! ACGCTCCAAAGTCCAGTTTT+AGG + Chr5:54041374-54041393 MsG0580027124.01.T01:intron 45.0%
! ACTGTCTTCTGCAGCTTTAG+GGG + Chr5:54038784-54038803 MsG0580027124.01.T01:CDS 45.0%
! TGGCCCAATGGACTTTCAAA+TGG + Chr5:54042405-54042424 MsG0580027124.01.T01:CDS 45.0%
! TTAGTGTCATGAGGTGTCCT+GGG - Chr5:54043734-54043753 None:intergenic 45.0%
! TTTAGTGTCATGAGGTGTCC+TGG - Chr5:54043735-54043754 None:intergenic 45.0%
!! AAAACCGGCTTGTAAGGTGA+GGG - Chr5:54041284-54041303 None:intergenic 45.0%
!! AGTGATGCTTTGTGCTGGTT+TGG + Chr5:54040435-54040454 MsG0580027124.01.T01:CDS 45.0%
!! CACCTTACAAGTCGGTTTTG+TGG + Chr5:54041473-54041492 MsG0580027124.01.T01:intron 45.0%
!! CCTTACAAGTCGGTTTTGTG+GGG + Chr5:54041475-54041494 MsG0580027124.01.T01:intron 45.0%
AGGCCATCTCTAACCCAATG+CGG - Chr5:54041422-54041441 None:intergenic 50.0%
AGGTCACTCCATCCAGTCTT+GGG + Chr5:54041570-54041589 MsG0580027124.01.T01:intron 50.0%
CAACATCACCAGCCACAAGA+AGG - Chr5:54038916-54038935 None:intergenic 50.0%
CACCAAAGGTCATGATTCCC+AGG - Chr5:54039010-54039029 None:intergenic 50.0%
CATGCATGTAACTGGCCCAA+TGG + Chr5:54042393-54042412 MsG0580027124.01.T01:CDS 50.0%
CATTGGGCCAGTTACATGCA+TGG - Chr5:54042395-54042414 None:intergenic 50.0%
CCTGGGAACAAAGTGGGAAA+AGG - Chr5:54042523-54042542 None:intergenic 50.0%
CCTTAGCTTACCCAAGGGAA+AGG + Chr5:54043597-54043616 MsG0580027124.01.T01:CDS 50.0%
CCTTTCCCTTGGGTAAGCTA+AGG - Chr5:54043600-54043619 None:intergenic 50.0%
CTACACTCGGGACTAAATCG+AGG - Chr5:54039148-54039167 None:intergenic 50.0%
GATCCGAATGGTCCGATAAC+GGG - Chr5:54041354-54041373 None:intergenic 50.0%
GATGATGTCCTTCTTGTGGC+TGG + Chr5:54038905-54038924 MsG0580027124.01.T01:CDS 50.0%
GGTGAAGGGATAGATAGCTG+AGG + Chr5:54039557-54039576 MsG0580027124.01.T01:intron 50.0%
GTGATTAAGGCTGCATCAGC+CGG + Chr5:54039266-54039285 MsG0580027124.01.T01:intron 50.0%
! CCTTTTCCCACTTTGTTCCC+AGG + Chr5:54042520-54042539 MsG0580027124.01.T01:CDS 50.0%
! CGGTTTTGCAGGGTTGAGTT+TGG + Chr5:54041297-54041316 MsG0580027124.01.T01:intron 50.0%
!! ACCTTACAAGCCGGTTTTGC+AGG + Chr5:54041286-54041305 MsG0580027124.01.T01:intron 50.0%
!! ACTTTGGAGCGTGATCCGAA+TGG - Chr5:54041366-54041385 None:intergenic 50.0%
!! CAAAACCGGCTTGTAAGGTG+AGG - Chr5:54041285-54041304 None:intergenic 50.0%
!! CCCCACAAAACCGACTTGTA+AGG - Chr5:54041478-54041497 None:intergenic 50.0%
!! CCTTACAAGCCGGTTTTGCA+GGG + Chr5:54041287-54041306 MsG0580027124.01.T01:intron 50.0%
!! TGGAGTGACCTGATAATGGG+TGG - Chr5:54041561-54041580 None:intergenic 50.0%
ACATCCCTCACACCCAAGAC+TGG - Chr5:54041585-54041604 None:intergenic 55.0%
AGGCACCCTTAGCTTACCCA+AGG + Chr5:54043591-54043610 MsG0580027124.01.T01:CDS 55.0%
AGGCTATCGCATCCCGTCTT+TGG + Chr5:54040175-54040194 MsG0580027124.01.T01:CDS 55.0%
CAGGTCACTCCATCCAGTCT+TGG + Chr5:54041569-54041588 MsG0580027124.01.T01:intron 55.0%
CCAACGGTTGTGGGTGCATT+AGG + Chr5:54039979-54039998 MsG0580027124.01.T01:CDS 55.0%
CCACCCGTTATCGGACCATT+CGG + Chr5:54041348-54041367 MsG0580027124.01.T01:intron 55.0%
CCATCCAGTCTTGGGTGTGA+GGG + Chr5:54041578-54041597 MsG0580027124.01.T01:intron 55.0%
CCTAATGCACCCACAACCGT+TGG - Chr5:54039982-54040001 None:intergenic 55.0%
CTACTGGGCCACCCATTATC+AGG + Chr5:54041550-54041569 MsG0580027124.01.T01:intron 55.0%
GGCACCCTTAGCTTACCCAA+GGG + Chr5:54043592-54043611 MsG0580027124.01.T01:CDS 55.0%
GGCCATCTCTAACCCAATGC+GGG - Chr5:54041421-54041440 None:intergenic 55.0%
TCCATCCAGTCTTGGGTGTG+AGG + Chr5:54041577-54041596 MsG0580027124.01.T01:intron 55.0%
! GTCCCGCATTGGGTTAGAGA+TGG + Chr5:54041416-54041435 MsG0580027124.01.T01:intron 55.0%
! TCGCATCCCGTCTTTGGAGA+TGG + Chr5:54040181-54040200 MsG0580027124.01.T01:CDS 55.0%
!! CAGCTTTAGGGGACACTGGT+GGG + Chr5:54038795-54038814 MsG0580027124.01.T01:CDS 55.0%
!! CCCTGCAAAACCGGCTTGTA+AGG - Chr5:54041290-54041309 None:intergenic 55.0%
!! TCTGCAGCTTTAGGGGACAC+TGG + Chr5:54038791-54038810 MsG0580027124.01.T01:CDS 55.0%
!! TGGTGGGTTGCGTGTGTTTG+TGG + Chr5:54038811-54038830 MsG0580027124.01.T01:CDS 55.0%
!! TTGGGTAAGCTAAGGGTGCC+TGG - Chr5:54043592-54043611 None:intergenic 55.0%
CCCTCACACCCAAGACTGGA+TGG - Chr5:54041581-54041600 None:intergenic 60.0%
!! CCGAATGGTCCGATAACGGG+TGG - Chr5:54041351-54041370 None:intergenic 60.0%
!! GACCTTTGGTGTCGTCGCGA+GGG + Chr5:54039019-54039038 MsG0580027124.01.T01:CDS 60.0%
!! GCAGCTTTAGGGGACACTGG+TGG + Chr5:54038794-54038813 MsG0580027124.01.T01:CDS 60.0%
!! TGACCTTTGGTGTCGTCGCG+AGG + Chr5:54039018-54039037 MsG0580027124.01.T01:CDS 60.0%
GTCCCTCGCGACGACACCAA+AGG - Chr5:54039024-54039043 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 54038752 54043808 54038752 ID=MsG0580027124.01;Name=MsG0580027124.01
Chr5 mRNA 54038752 54043808 54038752 ID=MsG0580027124.01.T01;Parent=MsG0580027124.01;Name=MsG0580027124.01.T01;_AED=0.40;_eAED=0.45;_QI=0|0|0|1|1|1|7|0|382
Chr5 exon 54038752 54039051 54038752 ID=MsG0580027124.01.T01:exon:40688;Parent=MsG0580027124.01.T01
Chr5 exon 54039913 54040032 54039913 ID=MsG0580027124.01.T01:exon:40687;Parent=MsG0580027124.01.T01
Chr5 exon 54040149 54040202 54040149 ID=MsG0580027124.01.T01:exon:40686;Parent=MsG0580027124.01.T01
Chr5 exon 54040364 54040465 54040364 ID=MsG0580027124.01.T01:exon:40685;Parent=MsG0580027124.01.T01
Chr5 exon 54042378 54042541 54042378 ID=MsG0580027124.01.T01:exon:40684;Parent=MsG0580027124.01.T01
Chr5 exon 54043296 54043478 54043296 ID=MsG0580027124.01.T01:exon:40683;Parent=MsG0580027124.01.T01
Chr5 exon 54043583 54043808 54043583 ID=MsG0580027124.01.T01:exon:40682;Parent=MsG0580027124.01.T01
Chr5 CDS 54038752 54039051 54038752 ID=MsG0580027124.01.T01:cds;Parent=MsG0580027124.01.T01
Chr5 CDS 54039913 54040032 54039913 ID=MsG0580027124.01.T01:cds;Parent=MsG0580027124.01.T01
Chr5 CDS 54040149 54040202 54040149 ID=MsG0580027124.01.T01:cds;Parent=MsG0580027124.01.T01
Chr5 CDS 54040364 54040465 54040364 ID=MsG0580027124.01.T01:cds;Parent=MsG0580027124.01.T01
Chr5 CDS 54042378 54042541 54042378 ID=MsG0580027124.01.T01:cds;Parent=MsG0580027124.01.T01
Chr5 CDS 54043296 54043478 54043296 ID=MsG0580027124.01.T01:cds;Parent=MsG0580027124.01.T01
Chr5 CDS 54043583 54043808 54043583 ID=MsG0580027124.01.T01:cds;Parent=MsG0580027124.01.T01
Gene Sequence

>MsG0580027124.01.T01

ATGCAAAGGTTTAATCTTGGAAGACAACAGATACTGTCTTCTGCAGCTTTAGGGGACACTGGTGGGTTGCGTGTGTTTGTGGTTTCTGATTTGCATACTGATTATGATGAGAATTTGAAGTGGGTGGAGTGTTTGTCATCTGTGAATTATAAGGATGATGTCCTTCTTGTGGCTGGTGATGTTGCTGAGACATATAATATGTTTTTTGTTACAATGTCTCTTTTGAGAGAGAGATTTGAACATGTTTTCTATGTTCCTGGGAATCATGACCTTTGGTGTCGTCGCGAGGGACAAAATTATGTTGATTCTCTTGAAAAGTTTAACAAGTTGCTTGATGCATGTAAGAGAATTGGAGTAGAGACAAATCCAACGGTTGTGGGTGCATTAGGAATCATTCCTTTGTTCTCTTGGTACCATGAGAGCTTTGACAAAGAGGAGGACATAACAGGCTATCGCATCCCGTCTTTGGAGATGGGTGTTGTCAATTGTGTAATAAAAAAAGCAGAATGTAAAGATCCTAAAAATGTTGCTTACTGTTGTGTGAAAGTGATGCTTTGTGCTGGTTTGGCAGTTACTGCTTGTAAGGACTTCCATGCATGTAACTGGCCCAATGGACTTTCAAATGGAGATACCTCGCTCTCTTTATATTTTGATGCCCTAAATGATAACCAAATGGAAATGATACAGGAGATTCAGAAGACGTGTGATCATATCATTTCCTTTTCCCACTTTGTTCCCAGGCAAGAACTTTGTCCAGAAAAGAGGATGTTATTCTATCCAAAGCTCCCAAAAATAATTGGTTCAGACCCTCTTGAAGATCGAATAAGATCTATACATGGTGATATGGGAAGGAAGGATGCATCTTCTTGTCATGTGTTTGGTCATACTCACTTCTGTTGGGATGCTGTTGTAGATGGCATAAGGTATGTCCAGGCACCCTTAGCTTACCCAAGGGAAAGGAAGAGAAGAATGAATGGAGGGGAAAATTGGCTACCATTTTGTCTTTATGCTGACAAAAAGTTTACTGATAAACTCAATCCTTGCTTTTGGTCTGATTATTACTCTGTCAATCCCAGGACACCTCATGACACTAAACTTGCTCCTTGGGTAGCCAGATTTTACAAGAAAAAGCAAAGTATAGATGTATAG
Protein sequence

>MsG0580027124.01.T01

MQRFNLGRQQILSSAALGDTGGLRVFVVSDLHTDYDENLKWVECLSSVNYKDDVLLVAGDVAETYNMFFVTMSLLRERFEHVFYVPGNHDLWCRREGQNYVDSLEKFNKLLDACKRIGVETNPTVVGALGIIPLFSWYHESFDKEEDITGYRIPSLEMGVVNCVIKKAECKDPKNVAYCCVKVMLCAGLAVTACKDFHACNWPNGLSNGDTSLSLYFDALNDNQMEMIQEIQKTCDHIISFSHFVPRQELCPEKRMLFYPKLPKIIGSDPLEDRIRSIHGDMGRKDASSCHVFGHTHFCWDAVVDGIRYVQAPLAYPRERKRRMNGGENWLPFCLYADKKFTDKLNPCFWSDYYSVNPRTPHDTKLAPWVARFYKKKQSIDV*