AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017322.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017322.01.T01 MTR_3g105290 90.698 215 13 1 1 208 64 278 8.08e-138 388
MsG0380017322.01.T01 MTR_3g105290 90.556 180 10 1 1 173 64 243 6.61e-114 325
MsG0380017322.01.T01 MTR_3g087050 38.389 211 120 4 2 204 64 272 2.84e-47 158
MsG0380017322.01.T01 MTR_5g064035 37.037 216 126 5 2 208 62 276 3.38e-41 142
MsG0380017322.01.T01 MTR_8g077290 39.623 212 118 5 6 210 78 286 9.12e-41 141
MsG0380017322.01.T01 MTR_2g008880 36.239 218 128 5 2 210 66 281 4.44e-40 140
MsG0380017322.01.T01 MTR_8g077290 40.102 197 109 4 6 196 78 271 5.31e-40 138
MsG0380017322.01.T01 MTR_5g020250 37.788 217 123 6 1 210 72 283 2.86e-39 137
MsG0380017322.01.T01 MTR_5g020320 38.579 197 112 4 6 196 69 262 1.58e-37 132
MsG0380017322.01.T01 MTR_5g020260 36.364 209 124 4 6 208 75 280 1.39e-34 125
MsG0380017322.01.T01 MTR_8g090060 29.817 218 109 5 2 210 62 244 3.89e-27 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017322.01.T01 AT5G21950 48.585 212 101 2 2 206 67 277 9.61e-69 213
MsG0380017322.01.T01 AT5G21950 48.585 212 101 2 2 206 119 329 3.69e-68 213
MsG0380017322.01.T01 AT5G21950 49.505 202 94 2 2 196 67 267 3.01e-67 207
MsG0380017322.01.T01 AT4G33180 47.196 214 103 4 2 206 68 280 1.40e-61 194
MsG0380017322.01.T01 AT5G21950 50.345 145 71 1 2 146 67 210 3.57e-47 155
MsG0380017322.01.T01 AT5G21950 50.345 145 71 1 2 146 67 210 3.57e-47 155
MsG0380017322.01.T01 AT5G21950 50.345 145 71 1 2 146 119 262 2.09e-46 154
MsG0380017322.01.T01 AT5G21950 50.345 145 71 1 2 146 119 262 2.09e-46 154
MsG0380017322.01.T01 AT4G33180 53.333 135 61 2 2 135 68 201 3.66e-45 150
MsG0380017322.01.T01 AT5G09430 36.111 216 126 4 2 208 73 285 1.26e-42 146
MsG0380017322.01.T01 AT4G39955 36.408 206 119 5 2 198 62 264 2.62e-41 143
MsG0380017322.01.T01 AT1G78210 34.703 219 128 6 2 208 64 279 2.34e-37 132
MsG0380017322.01.T01 AT1G72620 35.437 206 116 6 4 196 97 298 3.13e-32 119
MsG0380017322.01.T01 AT2G18360 34.906 212 128 5 6 210 79 287 3.18e-32 119
MsG0380017322.01.T01 AT2G18360 35.533 197 118 4 6 196 79 272 1.28e-31 116
MsG0380017322.01.T01 AT1G17430 33.636 220 126 7 4 208 93 307 1.37e-30 115
MsG0380017322.01.T01 AT4G36610 34.597 211 130 5 6 210 77 285 4.59e-30 113

Find 72 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCGGTTGTAAGAAATTT+AGG 0.175192 3:+94931926 None:intergenic
GATGATGATTAGTTAATTAT+TGG 0.190298 3:+94934605 None:intergenic
GAAGAAACGTACAGTGTTTA+TGG 0.201566 3:+94934659 None:intergenic
TGGAATAGTTGCGTATAATT+TGG 0.256443 3:-94934200 MsG0380017322.01.T01:CDS
GTTCCCGATCTAATCTTCTT+TGG 0.272608 3:-94934337 MsG0380017322.01.T01:CDS
TTGCAGGGTAATAAGTAAAA+AGG 0.295321 3:-94932023 MsG0380017322.01.T01:intron
AAAGTAGTTATTGCAAGTTC+TGG 0.338855 3:-94934148 MsG0380017322.01.T01:CDS
TTTCTTGAGGGACTTCTTAA+GGG 0.369669 3:-94933975 MsG0380017322.01.T01:intron
AAACATTTCACCTCTTCAAC+AGG 0.392798 3:-94933748 MsG0380017322.01.T01:intron
GGAAAATTGTTGGAGAAGAT+AGG 0.395031 3:-94934259 MsG0380017322.01.T01:CDS
TATAATTTGGCGAAGATGTT+GGG 0.398616 3:-94934187 MsG0380017322.01.T01:CDS
GGAAAAGATGGAGCTTCTAA+TGG 0.400178 3:-94933798 MsG0380017322.01.T01:CDS
CTCGTCCTCATCCACGGTTT+CGG 0.400394 3:-94934424 MsG0380017322.01.T01:five_prime_UTR
ATACATACTCCTTCAATTCA+TGG 0.401600 3:+94933595 None:intergenic
GCAAGATTAGGAATTGATAA+AGG 0.402019 3:-94932001 MsG0380017322.01.T01:CDS
TACCTCCGCCGTTGTTTCAC+CGG 0.432558 3:-94934537 MsG0380017322.01.T01:five_prime_UTR
ATAATATTGTTGAATTCCTC+CGG 0.432661 3:+94931949 None:intergenic
CGCCGTTGTTTCACCGGCGC+CGG 0.436167 3:-94934531 MsG0380017322.01.T01:five_prime_UTR
TTCAACTGTTGAGGAGAAGA+AGG 0.453370 3:+94934049 None:intergenic
GCTTCTAATGGATTGTCTAT+AGG 0.457995 3:-94933786 MsG0380017322.01.T01:CDS
ATTATTGGATCATGACGATT+GGG 0.458499 3:+94934620 None:intergenic
GGAATCAGTTGGAAAATTGT+TGG 0.459337 3:-94934269 MsG0380017322.01.T01:CDS
TCCAGGAAGTTCTCGTATTG+TGG 0.474193 3:-94933653 MsG0380017322.01.T01:intron
GTCCTATGGCGATGTGGCAA+TGG 0.477842 3:-94934402 MsG0380017322.01.T01:exon
TGTTTATGGATGGATGAGTC+AGG 0.483061 3:+94934673 None:intergenic
AATTATTGGATCATGACGAT+TGG 0.484999 3:+94934619 None:intergenic
TAATGGATTGTCTATAGGAC+AGG 0.489551 3:-94933781 MsG0380017322.01.T01:CDS
AATTCATGGGCCATCTGCAC+GGG 0.491317 3:+94933609 None:intergenic
CATCCACGGTTTCGGTCCTA+TGG 0.493553 3:-94934416 MsG0380017322.01.T01:exon
GCAGATGGCCCATGAATTGA+AGG 0.496257 3:-94933604 MsG0380017322.01.T01:CDS
GTGGCGTTGTTGAAAAGAGC+TGG 0.502078 3:-94934100 MsG0380017322.01.T01:CDS
TTGAGATAAGAGACCGGCGC+CGG 0.505406 3:+94934518 None:intergenic
CATTTAGTTACCTGTTGAAG+AGG 0.505749 3:+94933738 None:intergenic
CCATCGTTTCTTAGTTTCGC+CGG 0.509953 3:-94934573 MsG0380017322.01.T01:five_prime_UTR
AGATAATAGGAAGGAAAAGA+TGG 0.510309 3:-94933810 MsG0380017322.01.T01:intron
GTATAATTTGGCGAAGATGT+TGG 0.512839 3:-94934188 MsG0380017322.01.T01:CDS
CCAGGAAGTTCTCGTATTGT+GGG 0.514777 3:-94933652 MsG0380017322.01.T01:intron
CAATATATTTCCCGTGCAGA+TGG 0.516669 3:-94933619 MsG0380017322.01.T01:CDS
AGTTTCGCCGGCTTATACAA+CGG 0.520083 3:-94934561 MsG0380017322.01.T01:five_prime_UTR
CACGTGGTGGGAACGAGTTA+TGG 0.520296 3:-94934223 MsG0380017322.01.T01:CDS
CGCCGGTGAAACAACGGCGG+AGG 0.521427 3:+94934535 None:intergenic
TCTCCAAAGAAGATTAGATC+GGG 0.527590 3:+94934334 None:intergenic
AAATTTCAAGCGGAATCAGT+TGG 0.532529 3:-94934280 MsG0380017322.01.T01:CDS
TTCTCCAAAGAAGATTAGAT+CGG 0.537749 3:+94934333 None:intergenic
TGTGCCACAAATTGAAAAGC+CGG 0.542764 3:-94931968 MsG0380017322.01.T01:exon
GTTGTTGAAAAGAGCTGGAT+TGG 0.546954 3:-94934095 MsG0380017322.01.T01:CDS
AGAGGTTGAAGTGTGGAGCT+AGG 0.550512 3:+94934362 None:intergenic
TACATACTCCTTCAATTCAT+GGG 0.553495 3:+94933596 None:intergenic
TAGGACCGAAACCGTGGATG+AGG 0.554881 3:+94934419 None:intergenic
CAATTCATGGGCCATCTGCA+CGG 0.558178 3:+94933608 None:intergenic
CCGTGGATGAGGACGAGAGA+AGG 0.567087 3:+94934430 None:intergenic
CCTTCTCTCGTCCTCATCCA+CGG 0.567621 3:-94934430 MsG0380017322.01.T01:five_prime_UTR
CGCCATTGCCACATCGCCAT+AGG 0.577637 3:+94934400 None:intergenic
AAACGTACAGTGTTTATGGA+TGG 0.585904 3:+94934663 None:intergenic
GACCGGCGCCGGTGAAACAA+CGG 0.598385 3:+94934529 None:intergenic
ATTGGATCATGACGATTGGG+TGG 0.605843 3:+94934623 None:intergenic
GAGGTAGCCGTTGTATAAGC+CGG 0.623456 3:+94934554 None:intergenic
CAGGAAGTTCTCGTATTGTG+GGG 0.624648 3:-94933651 MsG0380017322.01.T01:CDS
AGGAAGTTCTCGTATTGTGG+GGG 0.630670 3:-94933650 MsG0380017322.01.T01:CDS
AAGAACAGAGAAATTTCAAG+CGG 0.633582 3:-94934290 MsG0380017322.01.T01:CDS
GTTTCGGTCCTATGGCGATG+TGG 0.638713 3:-94934408 MsG0380017322.01.T01:exon
CCGGCGAAACTAAGAAACGA+TGG 0.642487 3:+94934573 None:intergenic
GTGGTGGGAACGAGTTATGG+TGG 0.651158 3:-94934220 MsG0380017322.01.T01:CDS
AGATTAGGAATTGATAAAGG+AGG 0.651171 3:-94931998 MsG0380017322.01.T01:CDS
TCGCCATAGGACCGAAACCG+TGG 0.671124 3:+94934413 None:intergenic
AGATTAGATCGGGAACGTAG+AGG 0.675856 3:+94934344 None:intergenic
GGAAGTTCTCGTATTGTGGG+GGG 0.676838 3:-94933649 MsG0380017322.01.T01:CDS
GGAACGTAGAGGTTGAAGTG+TGG 0.688244 3:+94934355 None:intergenic
CATAACTCGTTCCCACCACG+TGG 0.694739 3:+94934224 None:intergenic
GCCACAAATTGAAAAGCCGG+AGG 0.697095 3:-94931965 MsG0380017322.01.T01:exon
CGGCGCCGGTGAAACAACGG+CGG 0.720587 3:+94934532 None:intergenic
TATGACAAAGAATCATAACG+TGG 0.759539 3:-94934119 MsG0380017322.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAATCAAGATTT+CGG + Chr3:94934676-94934695 None:intergenic 10.0%
!!! ATAATTCTCAAATATTTTAA+TGG - Chr3:94933779-94933798 MsG0380017322.01.T01:CDS 10.0%
!!! TTGTAATTTTCTTAAAAAAA+GGG + Chr3:94934281-94934300 None:intergenic 10.0%
!!! TTTGTAATTTTCTTAAAAAA+AGG + Chr3:94934282-94934301 None:intergenic 10.0%
!! AACTCTAAACTTTAATATAT+GGG + Chr3:94933971-94933990 None:intergenic 15.0%
!! ACATTATAATAAGTTCATAA+TGG - Chr3:94933081-94933100 MsG0380017322.01.T01:intron 15.0%
!! CATTATAATAAGTTCATAAT+GGG - Chr3:94933082-94933101 MsG0380017322.01.T01:intron 15.0%
!! CATTTAATAAATAATGTATG+TGG - Chr3:94933647-94933666 MsG0380017322.01.T01:CDS 15.0%
!! TGAATGAAATTCAATAATAA+GGG + Chr3:94933433-94933452 None:intergenic 15.0%
!! TTGAATGAAATTCAATAATA+AGG + Chr3:94933434-94933453 None:intergenic 15.0%
!!! ATTTTAAAATTTTGTTTGAG+AGG - Chr3:94934472-94934491 MsG0380017322.01.T01:five_prime_UTR 15.0%
!!! TAAAATTAGTTTATAACCTA+TGG + Chr3:94933222-94933241 None:intergenic 15.0%
!!! TTGTTTTAATTTGTTTTGTT+GGG + Chr3:94931888-94931907 None:intergenic 15.0%
!!! TTTGTTTTAATTTGTTTTGT+TGG + Chr3:94931889-94931908 None:intergenic 15.0%
!! CATTCAATAAATGATGTATA+TGG + Chr3:94933686-94933705 None:intergenic 20.0%
!! GAACTCTAAACTTTAATATA+TGG + Chr3:94933972-94933991 None:intergenic 20.0%
!!! ACACATTTAATTTACTTGTA+CGG + Chr3:94932876-94932895 None:intergenic 20.0%
!!! ATCTAGTATTCCAATTTTAT+TGG + Chr3:94933174-94933193 None:intergenic 20.0%
!!! ATTCAATAATAAGGGTATAA+TGG + Chr3:94933425-94933444 None:intergenic 20.0%
!!! GATGATGATTAGTTAATTAT+TGG + Chr3:94931981-94932000 None:intergenic 20.0%
!!! TCTAGTATTCCAATTTTATT+GGG + Chr3:94933173-94933192 None:intergenic 20.0%
! AACAAATATTATGCAGGATT+TGG + Chr3:94933014-94933033 None:intergenic 25.0%
! AAGAAAAAATTAGGCACAAA+AGG + Chr3:94932594-94932613 None:intergenic 25.0%
! AATATATGGGAAATGTTAAC+CGG + Chr3:94933958-94933977 None:intergenic 25.0%
! ACATTTCAATAAACCCATTT+CGG + Chr3:94934389-94934408 None:intergenic 25.0%
! AGAAAAAATTAGGCACAAAA+GGG + Chr3:94932593-94932612 None:intergenic 25.0%
! AGAGATTATACTCAGATAAT+AGG - Chr3:94932760-94932779 MsG0380017322.01.T01:intron 25.0%
! ATAACCTATGGATGATATTT+GGG + Chr3:94933210-94933229 None:intergenic 25.0%
! ATAAGTAAAAAGGCAAGATT+AGG - Chr3:94934570-94934589 MsG0380017322.01.T01:five_prime_UTR 25.0%
! ATAATATTGTTGAATTCCTC+CGG + Chr3:94934637-94934656 None:intergenic 25.0%
! ATATAAGATTGATTGATTGG+TGG - Chr3:94933105-94933124 MsG0380017322.01.T01:intron 25.0%
! ATTATACTCAGATAATAGGA+AGG - Chr3:94932764-94932783 MsG0380017322.01.T01:intron 25.0%
! ATTTCGGTTGTAAGAAATTT+AGG + Chr3:94934660-94934679 None:intergenic 25.0%
! CTTCTTATTAACTTATTGCA+GGG - Chr3:94934545-94934564 MsG0380017322.01.T01:five_prime_UTR 25.0%
! TATAACCTATGGATGATATT+TGG + Chr3:94933211-94933230 None:intergenic 25.0%
! TCCACTAACTACAATTAATA+AGG - Chr3:94933463-94933482 MsG0380017322.01.T01:intron 25.0%
! TCCTTATTAATTGTAGTTAG+TGG + Chr3:94933467-94933486 None:intergenic 25.0%
! TTCACTATGTTAGGAATTTA+CGG - Chr3:94934158-94934177 MsG0380017322.01.T01:CDS 25.0%
!! TATCTTACATTGATTGATGA+TGG - Chr3:94934086-94934105 MsG0380017322.01.T01:CDS 25.0%
!!! ATCAAATTTTTCAACTGTTG+AGG + Chr3:94932546-94932565 None:intergenic 25.0%
AAAATTATCCAATGGATCGA+TGG - Chr3:94933278-94933297 MsG0380017322.01.T01:intron 30.0%
AAAGTAGTTATTGCAAGTTC+TGG - Chr3:94932435-94932454 MsG0380017322.01.T01:intron 30.0%
AAGAACAGAGAAATTTCAAG+CGG - Chr3:94932293-94932312 MsG0380017322.01.T01:intron 30.0%
AAGTCCCTCAAGAAAAAATT+AGG + Chr3:94932603-94932622 None:intergenic 30.0%
AATTATTGGATCATGACGAT+TGG + Chr3:94931967-94931986 None:intergenic 30.0%
AGATAATAGGAAGGAAAAGA+TGG - Chr3:94932773-94932792 MsG0380017322.01.T01:intron 30.0%
AGATTAGGAATTGATAAAGG+AGG - Chr3:94934585-94934604 MsG0380017322.01.T01:five_prime_UTR 30.0%
AGCACAAGTGAAAAGAAAAT+TGG + Chr3:94933041-94933060 None:intergenic 30.0%
ATAAGCAGTCCCAATAAAAT+TGG - Chr3:94933161-94933180 MsG0380017322.01.T01:intron 30.0%
ATACATACTCCTTCAATTCA+TGG + Chr3:94932991-94933010 None:intergenic 30.0%
ATGGAGGTAGTGAAAAAAAA+AGG - Chr3:94934329-94934348 MsG0380017322.01.T01:CDS 30.0%
ATTATTGGATCATGACGATT+GGG + Chr3:94931966-94931985 None:intergenic 30.0%
CCTGCAATAAGTTAATAAGA+AGG + Chr3:94934547-94934566 None:intergenic 30.0%
CCTTCTTATTAACTTATTGC+AGG - Chr3:94934544-94934563 MsG0380017322.01.T01:five_prime_UTR 30.0%
GCAAGATTAGGAATTGATAA+AGG - Chr3:94934582-94934601 MsG0380017322.01.T01:five_prime_UTR 30.0%
GGGATATAAGATTGATTGAT+TGG - Chr3:94933102-94933121 MsG0380017322.01.T01:intron 30.0%
GTGATGTGAAATTACCAAAA+TGG - Chr3:94934255-94934274 MsG0380017322.01.T01:CDS 30.0%
TACATACTCCTTCAATTCAT+GGG + Chr3:94932990-94933009 None:intergenic 30.0%
TAGATCCCAAAATTATCCAA+TGG - Chr3:94933270-94933289 MsG0380017322.01.T01:intron 30.0%
TATAATTTGGCGAAGATGTT+GGG - Chr3:94932396-94932415 MsG0380017322.01.T01:intron 30.0%
TATGACAAAGAATCATAACG+TGG - Chr3:94932464-94932483 MsG0380017322.01.T01:intron 30.0%
TCACTATGTTAGGAATTTAC+GGG - Chr3:94934159-94934178 MsG0380017322.01.T01:CDS 30.0%
TCTCAAAATAATACTCCATC+CGG + Chr3:94933743-94933762 None:intergenic 30.0%
TGGAATAGTTGCGTATAATT+TGG - Chr3:94932383-94932402 MsG0380017322.01.T01:intron 30.0%
TGGAGGTAGTGAAAAAAAAA+GGG - Chr3:94934330-94934349 MsG0380017322.01.T01:CDS 30.0%
TTCTCCAAAGAAGATTAGAT+CGG + Chr3:94932253-94932272 None:intergenic 30.0%
TTGCAGGGTAATAAGTAAAA+AGG - Chr3:94934560-94934579 MsG0380017322.01.T01:five_prime_UTR 30.0%
! AAGTTTCTTACATTTGAGAC+CGG - Chr3:94933721-94933740 MsG0380017322.01.T01:intron 30.0%
! AGGTTTGTGCACAATTTTTA+AGG + Chr3:94933573-94933592 None:intergenic 30.0%
! ATCGATCCATTGGATAATTT+TGG + Chr3:94933279-94933298 None:intergenic 30.0%
! ATTGATTGATTGGTGGTTAT+GGG - Chr3:94933112-94933131 MsG0380017322.01.T01:intron 30.0%
! GCATACAAAGATTTTCTGTT+GGG + Chr3:94931855-94931874 None:intergenic 30.0%
! TCGATCCATTGGATAATTTT+GGG + Chr3:94933278-94933297 None:intergenic 30.0%
! TCTTAAAAAAAGGGCCATTT+TGG + Chr3:94934272-94934291 None:intergenic 30.0%
! TGCATACAAAGATTTTCTGT+TGG + Chr3:94931856-94931875 None:intergenic 30.0%
! TTGTTTTCTTAACCAATTCC+TGG - Chr3:94933927-94933946 MsG0380017322.01.T01:intron 30.0%
!! ATTTTAATGGTCATGCTAAC+CGG - Chr3:94933792-94933811 MsG0380017322.01.T01:CDS 30.0%
!! TTTTGTGTGGATTTGTTTGT+TGG + Chr3:94932132-94932151 None:intergenic 30.0%
!!! GATTTTTTGAGATAAGAGAC+CGG + Chr3:94932074-94932093 None:intergenic 30.0%
!!! TGTGCCTAATTTTTTCTTGA+GGG - Chr3:94932596-94932615 MsG0380017322.01.T01:intron 30.0%
!!! TTGTGCCTAATTTTTTCTTG+AGG - Chr3:94932595-94932614 MsG0380017322.01.T01:intron 30.0%
AAACATTTCACCTCTTCAAC+AGG - Chr3:94932835-94932854 MsG0380017322.01.T01:intron 35.0%
AAACGTACAGTGTTTATGGA+TGG + Chr3:94931923-94931942 None:intergenic 35.0%
AAATTTCAAGCGGAATCAGT+TGG - Chr3:94932303-94932322 MsG0380017322.01.T01:intron 35.0%
ACGTAATTTGAACTCTCGTA+TGG - Chr3:94932688-94932707 MsG0380017322.01.T01:intron 35.0%
AGATGAAAGAACACATGGAA+GGG - Chr3:94934214-94934233 MsG0380017322.01.T01:CDS 35.0%
ATCAATTTCATGGCCAAAGT+AGG + Chr3:94933143-94933162 None:intergenic 35.0%
ATCATCCTCATCATAACCTA+TGG + Chr3:94934039-94934058 None:intergenic 35.0%
ATTTCGCATTACTCATATCC+AGG - Chr3:94932913-94932932 MsG0380017322.01.T01:intron 35.0%
CATGTATGCTTCACTATGTT+AGG - Chr3:94934149-94934168 MsG0380017322.01.T01:CDS 35.0%
CATTTAGTTACCTGTTGAAG+AGG + Chr3:94932848-94932867 None:intergenic 35.0%
GAACTCTCGTATGGTAAAAA+GGG - Chr3:94932697-94932716 MsG0380017322.01.T01:intron 35.0%
GAAGAAACGTACAGTGTTTA+TGG + Chr3:94931927-94931946 None:intergenic 35.0%
GACTTCTTTAACCAGAATCA+TGG + Chr3:94933821-94933840 None:intergenic 35.0%
GGAAAATTGTTGGAGAAGAT+AGG - Chr3:94932324-94932343 MsG0380017322.01.T01:intron 35.0%
GGAATCAGTTGGAAAATTGT+TGG - Chr3:94932314-94932333 MsG0380017322.01.T01:intron 35.0%
GGCAGAAACAAATATTATGC+AGG + Chr3:94933020-94933039 None:intergenic 35.0%
GTATAATTTGGCGAAGATGT+TGG - Chr3:94932395-94932414 MsG0380017322.01.T01:intron 35.0%
TCAATTTCATGGCCAAAGTA+GGG + Chr3:94933142-94933161 None:intergenic 35.0%
TCATCCTCATCATAACCTAT+GGG + Chr3:94934038-94934057 None:intergenic 35.0%
TCGTATGGTAAAAAGGGAAA+GGG - Chr3:94932703-94932722 MsG0380017322.01.T01:intron 35.0%
TCTCCAAAGAAGATTAGATC+GGG + Chr3:94932252-94932271 None:intergenic 35.0%
TGAACTCTCGTATGGTAAAA+AGG - Chr3:94932696-94932715 MsG0380017322.01.T01:intron 35.0%
TTAGCCCAAATATCATCCAT+AGG - Chr3:94933203-94933222 MsG0380017322.01.T01:intron 35.0%
TTTCAATAAACCCATTTCGG+CGG + Chr3:94934386-94934405 None:intergenic 35.0%
TTTCTTGAGGGACTTCTTAA+GGG - Chr3:94932608-94932627 MsG0380017322.01.T01:intron 35.0%
! AACGACAAACTCTCCATTTT+TGG - Chr3:94932103-94932122 MsG0380017322.01.T01:intron 35.0%
! GATAAGTTGACATCATTACG+TGG - Chr3:94933993-94934012 MsG0380017322.01.T01:CDS 35.0%
! GATTGATTGATTGGTGGTTA+TGG - Chr3:94933111-94933130 MsG0380017322.01.T01:intron 35.0%
! GGGATCTAGTTTATAACCTA+TGG + Chr3:94933258-94933277 None:intergenic 35.0%
! TGATTTTGCTCTTTGCTCTT+TGG - Chr3:94934110-94934129 MsG0380017322.01.T01:CDS 35.0%
! TTCTTACATTTGAGACCTGA+GGG + Chr3:94933608-94933627 None:intergenic 35.0%
! TTTCTTACATTTGAGACCTG+AGG + Chr3:94933609-94933628 None:intergenic 35.0%
! TTTTCTTGAGGGACTTCTTA+AGG - Chr3:94932607-94932626 MsG0380017322.01.T01:intron 35.0%
!! ACGACAAACTCTCCATTTTT+GGG - Chr3:94932104-94932123 MsG0380017322.01.T01:intron 35.0%
!! GCTTCTAATGGATTGTCTAT+AGG - Chr3:94932797-94932816 MsG0380017322.01.T01:intron 35.0%
!! TAATGGATTGTCTATAGGAC+AGG - Chr3:94932802-94932821 MsG0380017322.01.T01:intron 35.0%
!!! CGCAAGCAATCATTTTTTGA+AGG + Chr3:94934732-94934751 None:intergenic 35.0%
AAAGAGAGAACTGAGGGAAT+AGG - Chr3:94934186-94934205 MsG0380017322.01.T01:CDS 40.0%
AAATGTTAACCGGTGTTTCC+AGG + Chr3:94933948-94933967 None:intergenic 40.0%
AAGAGAGAACTGAGGGAATA+GGG - Chr3:94934187-94934206 MsG0380017322.01.T01:CDS 40.0%
ATGAAATGCCATCGATCCAT+TGG + Chr3:94933289-94933308 None:intergenic 40.0%
CAATATATTTCCCGTGCAGA+TGG - Chr3:94932964-94932983 MsG0380017322.01.T01:intron 40.0%
CATCCTCATCATAACCTATG+GGG + Chr3:94934037-94934056 None:intergenic 40.0%
CTCGTATGGTAAAAAGGGAA+AGG - Chr3:94932702-94932721 MsG0380017322.01.T01:intron 40.0%
GAGAGAGATGAAAGAACACA+TGG - Chr3:94934209-94934228 MsG0380017322.01.T01:CDS 40.0%
GAGATGAAAGAACACATGGA+AGG - Chr3:94934213-94934232 MsG0380017322.01.T01:CDS 40.0%
GGAAAAGATGGAGCTTCTAA+TGG - Chr3:94932785-94932804 MsG0380017322.01.T01:intron 40.0%
GGGACTGCTTATCAATTTCA+TGG + Chr3:94933153-94933172 None:intergenic 40.0%
GTTATGGGTTTACCCTACTT+TGG - Chr3:94933127-94933146 MsG0380017322.01.T01:intron 40.0%
GTTCCCGATCTAATCTTCTT+TGG - Chr3:94932246-94932265 MsG0380017322.01.T01:intron 40.0%
GTTGTTGAAAAGAGCTGGAT+TGG - Chr3:94932488-94932507 MsG0380017322.01.T01:intron 40.0%
TAACCAATTCCTGGAAACAC+CGG - Chr3:94933936-94933955 MsG0380017322.01.T01:intron 40.0%
TACAAAACAGCCATCCACAT+TGG - Chr3:94934296-94934315 MsG0380017322.01.T01:CDS 40.0%
TGTGCCACAAATTGAAAAGC+CGG - Chr3:94934615-94934634 MsG0380017322.01.T01:five_prime_UTR 40.0%
TGTTTATGGATGGATGAGTC+AGG + Chr3:94931913-94931932 None:intergenic 40.0%
TTAACCAGAATCATGGACAC+CGG + Chr3:94933814-94933833 None:intergenic 40.0%
TTCAACTGTTGAGGAGAAGA+AGG + Chr3:94932537-94932556 None:intergenic 40.0%
! TGTTTGTTGGACCCCAAAAA+TGG + Chr3:94932119-94932138 None:intergenic 40.0%
! TTCTTACATTTGAGACCGGA+TGG - Chr3:94933725-94933744 MsG0380017322.01.T01:intron 40.0%
!! CGACAAACTCTCCATTTTTG+GGG - Chr3:94932105-94932124 MsG0380017322.01.T01:intron 40.0%
!!! AGACGCTTATTTTGAGACGA+AGG + Chr3:94933330-94933349 None:intergenic 40.0%
ACACCCCATAGGTTATGATG+AGG - Chr3:94934031-94934050 MsG0380017322.01.T01:CDS 45.0%
AGAACACATGGAAGGGTTTG+AGG - Chr3:94934221-94934240 MsG0380017322.01.T01:CDS 45.0%
AGATTAGATCGGGAACGTAG+AGG + Chr3:94932242-94932261 None:intergenic 45.0%
AGCAACTCGTGTAAGTCATG+TGG + Chr3:94934523-94934542 None:intergenic 45.0%
AGGAAGTTCTCGTATTGTGG+GGG - Chr3:94932933-94932952 MsG0380017322.01.T01:intron 45.0%
ATTGGATCATGACGATTGGG+TGG + Chr3:94931963-94931982 None:intergenic 45.0%
CAGGAAGTTCTCGTATTGTG+GGG - Chr3:94932932-94932951 MsG0380017322.01.T01:intron 45.0%
CATACACATGCCAATGTGGA+TGG + Chr3:94934309-94934328 None:intergenic 45.0%
CATTGGCATGTGTATGATGG+AGG - Chr3:94934313-94934332 MsG0380017322.01.T01:CDS 45.0%
CCACATTGGCATGTGTATGA+TGG - Chr3:94934310-94934329 MsG0380017322.01.T01:CDS 45.0%
CCAGGAAGTTCTCGTATTGT+GGG - Chr3:94932931-94932950 MsG0380017322.01.T01:intron 45.0%
CCATCATACACATGCCAATG+TGG + Chr3:94934313-94934332 None:intergenic 45.0%
CCATCGTTTCTTAGTTTCGC+CGG - Chr3:94932010-94932029 MsG0380017322.01.T01:CDS 45.0%
GAACACATGGAAGGGTTTGA+GGG - Chr3:94934222-94934241 MsG0380017322.01.T01:CDS 45.0%
GCAACTCGTGTAAGTCATGT+GGG + Chr3:94934522-94934541 None:intergenic 45.0%
GGAGAGAAAGAGAGAACTGA+GGG - Chr3:94934180-94934199 MsG0380017322.01.T01:CDS 45.0%
TAACCGGTGTTTCCAGGAAT+TGG + Chr3:94933942-94933961 None:intergenic 45.0%
TCCAGGAAGTTCTCGTATTG+TGG - Chr3:94932930-94932949 MsG0380017322.01.T01:intron 45.0%
! CTCTTTGCTCTTTGGAGACT+TGG - Chr3:94934118-94934137 MsG0380017322.01.T01:CDS 45.0%
! GACGAGAGAAGGTTTTTGTG+TGG + Chr3:94932145-94932164 None:intergenic 45.0%
! TCCTCCGGCTTTTCAATTTG+TGG + Chr3:94934622-94934641 None:intergenic 45.0%
!! AGTTTCGCCGGCTTATACAA+CGG - Chr3:94932022-94932041 MsG0380017322.01.T01:intron 45.0%
AACTGAAACCACCGCCGAAA+TGG - Chr3:94934372-94934391 MsG0380017322.01.T01:CDS 50.0%
AATTCATGGGCCATCTGCAC+GGG + Chr3:94932977-94932996 None:intergenic 50.0%
ACTGAAACCACCGCCGAAAT+GGG - Chr3:94934373-94934392 MsG0380017322.01.T01:CDS 50.0%
AGAGGTTGAAGTGTGGAGCT+AGG + Chr3:94932224-94932243 None:intergenic 50.0%
CAATAAACCCATTTCGGCGG+TGG + Chr3:94934383-94934402 None:intergenic 50.0%
CAATTCATGGGCCATCTGCA+CGG + Chr3:94932978-94932997 None:intergenic 50.0%
CCCACAATACGAGAACTTCC+TGG + Chr3:94932934-94932953 None:intergenic 50.0%
CCGGCGAAACTAAGAAACGA+TGG + Chr3:94932013-94932032 None:intergenic 50.0%
CCTGAGGGAGTAGTCGTTTA+AGG + Chr3:94933593-94933612 None:intergenic 50.0%
CCTTAAACGACTACTCCCTC+AGG - Chr3:94933590-94933609 MsG0380017322.01.T01:intron 50.0%
CTAACCGGTGTCCATGATTC+TGG - Chr3:94933807-94933826 MsG0380017322.01.T01:intron 50.0%
CTCACTCTTCTACACCCCAT+AGG - Chr3:94934020-94934039 MsG0380017322.01.T01:CDS 50.0%
GAGGTAGCCGTTGTATAAGC+CGG + Chr3:94932032-94932051 None:intergenic 50.0%
GCAGATGGCCCATGAATTGA+AGG - Chr3:94932979-94932998 MsG0380017322.01.T01:intron 50.0%
GCCACAAATTGAAAAGCCGG+AGG - Chr3:94934618-94934637 MsG0380017322.01.T01:five_prime_UTR 50.0%
GGAACGTAGAGGTTGAAGTG+TGG + Chr3:94932231-94932250 None:intergenic 50.0%
GGAAGTTCTCGTATTGTGGG+GGG - Chr3:94932934-94932953 MsG0380017322.01.T01:intron 50.0%
GGGAGAGAAAGAGAGAACTG+AGG - Chr3:94934179-94934198 MsG0380017322.01.T01:CDS 50.0%
GTGGCGTTGTTGAAAAGAGC+TGG - Chr3:94932483-94932502 MsG0380017322.01.T01:intron 50.0%
TCGTGTAAGTCATGTGGGCA+TGG + Chr3:94934517-94934536 None:intergenic 50.0%
!! AGGTGTGAAAAAGTGCCACG+TGG - Chr3:94932344-94932363 MsG0380017322.01.T01:intron 50.0%
!! GTGAAAAAGTGCCACGTGGT+GGG - Chr3:94932348-94932367 MsG0380017322.01.T01:intron 50.0%
!! TGTGAAAAAGTGCCACGTGG+TGG - Chr3:94932347-94932366 MsG0380017322.01.T01:intron 50.0%
CACATGGAAGGGTTTGAGGG+CGG - Chr3:94934225-94934244 MsG0380017322.01.T01:CDS 55.0%
CATAACTCGTTCCCACCACG+TGG + Chr3:94932362-94932381 None:intergenic 55.0%
CATCCACGGTTTCGGTCCTA+TGG - Chr3:94932167-94932186 MsG0380017322.01.T01:intron 55.0%
CCTTCTCTCGTCCTCATCCA+CGG - Chr3:94932153-94932172 MsG0380017322.01.T01:intron 55.0%
CTCGTCCTCATCCACGGTTT+CGG - Chr3:94932159-94932178 MsG0380017322.01.T01:intron 55.0%
GTCCTATGGCGATGTGGCAA+TGG - Chr3:94932181-94932200 MsG0380017322.01.T01:intron 55.0%
GTTTCGGTCCTATGGCGATG+TGG - Chr3:94932175-94932194 MsG0380017322.01.T01:intron 55.0%
TAGGACCGAAACCGTGGATG+AGG + Chr3:94932167-94932186 None:intergenic 55.0%
TTGAGATAAGAGACCGGCGC+CGG + Chr3:94932068-94932087 None:intergenic 55.0%
! CACGTGGTGGGAACGAGTTA+TGG - Chr3:94932360-94932379 MsG0380017322.01.T01:intron 55.0%
! GTGGTGGGAACGAGTTATGG+TGG - Chr3:94932363-94932382 MsG0380017322.01.T01:intron 55.0%
! TACCTCCGCCGTTGTTTCAC+CGG - Chr3:94932046-94932065 MsG0380017322.01.T01:intron 55.0%
AGGGTTTGAGGGCGGTGTGT+TGG - Chr3:94934233-94934252 MsG0380017322.01.T01:CDS 60.0%
CCGTGGATGAGGACGAGAGA+AGG + Chr3:94932156-94932175 None:intergenic 60.0%
CGCCATTGCCACATCGCCAT+AGG + Chr3:94932186-94932205 None:intergenic 60.0%
TCGCCATAGGACCGAAACCG+TGG + Chr3:94932173-94932192 None:intergenic 60.0%
!! GACCGGCGCCGGTGAAACAA+CGG + Chr3:94932057-94932076 None:intergenic 65.0%
CGCCGGTGAAACAACGGCGG+AGG + Chr3:94932051-94932070 None:intergenic 70.0%
! CGCCGTTGTTTCACCGGCGC+CGG - Chr3:94932052-94932071 MsG0380017322.01.T01:intron 70.0%
!! CGGCGCCGGTGAAACAACGG+CGG + Chr3:94932054-94932073 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 94931851 94934754 94931851 ID=MsG0380017322.01;Name=MsG0380017322.01
Chr3 mRNA 94931851 94934754 94931851 ID=MsG0380017322.01.T01;Parent=MsG0380017322.01;Name=MsG0380017322.01.T01;_AED=0.31;_eAED=0.31;_QI=335|0.66|0.75|1|1|1|4|125|216
Chr3 exon 94931851 94932039 94931851 ID=MsG0380017322.01.T01:exon:35257;Parent=MsG0380017322.01.T01
Chr3 exon 94933603 94933670 94933603 ID=MsG0380017322.01.T01:exon:35256;Parent=MsG0380017322.01.T01
Chr3 exon 94933749 94933823 94933749 ID=MsG0380017322.01.T01:exon:35255;Parent=MsG0380017322.01.T01
Chr3 exon 94933976 94934754 94933976 ID=MsG0380017322.01.T01:exon:35254;Parent=MsG0380017322.01.T01
Chr3 five_prime_UTR 94934420 94934754 94934420 ID=MsG0380017322.01.T01:five_prime_utr;Parent=MsG0380017322.01.T01
Chr3 CDS 94933976 94934419 94933976 ID=MsG0380017322.01.T01:cds;Parent=MsG0380017322.01.T01
Chr3 CDS 94933749 94933823 94933749 ID=MsG0380017322.01.T01:cds;Parent=MsG0380017322.01.T01
Chr3 CDS 94933603 94933670 94933603 ID=MsG0380017322.01.T01:cds;Parent=MsG0380017322.01.T01
Chr3 CDS 94931976 94932039 94931976 ID=MsG0380017322.01.T01:cds;Parent=MsG0380017322.01.T01
Chr3 three_prime_UTR 94931851 94931975 94931851 ID=MsG0380017322.01.T01:three_prime_utr;Parent=MsG0380017322.01.T01
Gene Sequence

>MsG0380017322.01.T01

ATGGCGATGTGGCAATGGCGTCAACAAGTTCAATTCCTAGCTCCACACTTCAACCTCTACGTTCCCGATCTAATCTTCTTTGGAGAATCAACAACGAAATCAAAAGAAAGAACAGAGAAATTTCAAGCGGAATCAGTTGGAAAATTGTTGGAGAAGATAGGTGTGAAAAAGTGCCACGTGGTGGGAACGAGTTATGGTGGAATAGTTGCGTATAATTTGGCGAAGATGTTGGGAGAAGAGAAGATTGAGAAAGTAGTTATTGCAAGTTCTGGTGTGAATATGACAAAGAATCATAACGTGGCGTTGTTGAAAAGAGCTGGATTGGACAAAATTGAAGATCTTATGTTACCTTCTTCTCCTCAACAGTTGAAAAATTTGATGTCACTTGCTGTCGCTAAACAAATCCCTTTTGTGCCTAATTTTTTCTTGAGGGACTTCTTAAGGGAAGGAAAAGATGGAGCTTCTAATGGATTGTCTATAGGACAGGTTGATATTTCAAACATTTCACCTCTTCAACAGGAAGTTCTCGTATTGTGGGGGGAAGATGACAATATATTTCCCGTGCAGATGGCCCATGAATTGAAGGAGGTAATAAGTAAAAAGGCAAGATTAGGAATTGATAAAGGAGGCATCTCATGTGCCACAAATTGA

Protein sequence

>MsG0380017322.01.T01

MAMWQWRQQVQFLAPHFNLYVPDLIFFGESTTKSKERTEKFQAESVGKLLEKIGVKKCHVVGTSYGGIVAYNLAKMLGEEKIEKVVIASSGVNMTKNHNVALLKRAGLDKIEDLMLPSSPQQLKNLMSLAVAKQIPFVPNFFLRDFLREGKDGASNGLSIGQVDISNISPLQQEVLVLWGEDDNIFPVQMAHELKEVISKKARLGIDKGGISCATN*