AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680030415.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030415.01.T01 MTR_6g006190 98.857 175 2 0 1 175 1 175 4.72e-131 364
MsG0680030415.01.T01 MTR_6g006190 99.130 115 1 0 61 175 37 151 4.43e-84 244
MsG0680030415.01.T01 MTR_1g083950 26.901 171 111 5 3 171 6 164 1.11e-16 73.6
MsG0680030415.01.T01 MTR_1g054750 31.959 97 66 0 66 162 85 181 2.68e-16 73.2
MsG0680030415.01.T01 MTR_1g087200 26.012 173 102 4 1 163 1 157 2.74e-16 72.4
MsG0680030415.01.T01 MTR_1g054765 32.673 101 65 1 66 166 75 172 3.19e-15 70.1
MsG0680030415.01.T01 MTR_5g065980 26.846 149 96 3 27 162 20 168 6.79e-15 69.3
MsG0680030415.01.T01 MTR_1g116290 64.706 51 10 1 18 60 19 69 1.41e-14 65.9
MsG0680030415.01.T01 MTR_5g077130 29.932 147 92 3 24 162 14 157 8.43e-14 65.9
MsG0680030415.01.T01 MTR_5g065980 28.788 132 84 3 41 162 39 170 1.18e-13 65.9
MsG0680030415.01.T01 MTR_1g088640 26.619 139 100 2 27 163 24 162 5.80e-13 63.9
MsG0680030415.01.T01 MTR_5g077130 29.730 148 92 4 24 162 14 158 4.59e-12 61.2
MsG0680030415.01.T02 MTR_6g006190 98.857 175 2 0 1 175 1 175 4.72e-131 364
MsG0680030415.01.T02 MTR_6g006190 99.130 115 1 0 61 175 37 151 4.43e-84 244
MsG0680030415.01.T02 MTR_1g083950 26.901 171 111 5 3 171 6 164 1.11e-16 73.6
MsG0680030415.01.T02 MTR_1g054750 31.959 97 66 0 66 162 85 181 2.68e-16 73.2
MsG0680030415.01.T02 MTR_1g087200 26.012 173 102 4 1 163 1 157 2.74e-16 72.4
MsG0680030415.01.T02 MTR_1g054765 32.673 101 65 1 66 166 75 172 3.19e-15 70.1
MsG0680030415.01.T02 MTR_5g065980 26.846 149 96 3 27 162 20 168 6.79e-15 69.3
MsG0680030415.01.T02 MTR_1g116290 64.706 51 10 1 18 60 19 69 1.41e-14 65.9
MsG0680030415.01.T02 MTR_5g077130 29.932 147 92 3 24 162 14 157 8.43e-14 65.9
MsG0680030415.01.T02 MTR_5g065980 28.788 132 84 3 41 162 39 170 1.18e-13 65.9
MsG0680030415.01.T02 MTR_1g088640 26.619 139 100 2 27 163 24 162 5.80e-13 63.9
MsG0680030415.01.T02 MTR_5g077130 29.730 148 92 4 24 162 14 158 4.59e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030415.01.T01 AT3G01520 73.714 175 46 0 1 175 1 175 7.53e-97 278
MsG0680030415.01.T01 AT5G14680 70.286 175 52 0 1 175 1 175 2.33e-95 274
MsG0680030415.01.T01 AT3G11930 33.058 121 75 1 48 162 73 193 1.87e-20 84.3
MsG0680030415.01.T01 AT3G11930 35.052 97 63 0 66 162 96 192 1.68e-19 82.0
MsG0680030415.01.T01 AT3G11930 35.052 97 63 0 66 162 98 194 1.74e-19 82.0
MsG0680030415.01.T01 AT3G58450 37.113 97 61 0 66 162 92 188 5.81e-19 80.5
MsG0680030415.01.T01 AT3G58450 33.735 166 83 6 8 162 32 181 4.53e-18 78.2
MsG0680030415.01.T01 AT1G68300 27.273 165 99 4 7 165 11 160 2.13e-17 75.5
MsG0680030415.01.T01 AT1G09740 36.957 92 58 0 77 168 79 170 3.48e-15 69.7
MsG0680030415.01.T01 AT1G09740 36.957 92 58 0 77 168 79 170 3.48e-15 69.7
MsG0680030415.01.T01 AT3G11930 27.891 147 74 2 48 162 73 219 4.92e-15 70.5
MsG0680030415.01.T01 AT3G62550 29.605 152 87 6 27 167 19 161 2.63e-14 67.4
MsG0680030415.01.T02 AT3G01520 73.714 175 46 0 1 175 1 175 7.53e-97 278
MsG0680030415.01.T02 AT5G14680 70.286 175 52 0 1 175 1 175 2.33e-95 274
MsG0680030415.01.T02 AT3G11930 33.058 121 75 1 48 162 73 193 1.87e-20 84.3
MsG0680030415.01.T02 AT3G11930 35.052 97 63 0 66 162 96 192 1.68e-19 82.0
MsG0680030415.01.T02 AT3G11930 35.052 97 63 0 66 162 98 194 1.74e-19 82.0
MsG0680030415.01.T02 AT3G58450 37.113 97 61 0 66 162 92 188 5.81e-19 80.5
MsG0680030415.01.T02 AT3G58450 33.735 166 83 6 8 162 32 181 4.53e-18 78.2
MsG0680030415.01.T02 AT1G68300 27.273 165 99 4 7 165 11 160 2.13e-17 75.5
MsG0680030415.01.T02 AT1G09740 36.957 92 58 0 77 168 79 170 3.48e-15 69.7
MsG0680030415.01.T02 AT1G09740 36.957 92 58 0 77 168 79 170 3.48e-15 69.7
MsG0680030415.01.T02 AT3G11930 27.891 147 74 2 48 162 73 219 4.92e-15 70.5
MsG0680030415.01.T02 AT3G62550 29.605 152 87 6 27 167 19 161 2.63e-14 67.4

Find 4 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGCACCTACCAAAGAATT+TGG 0.224148 6:+1891171 None:intergenic
ATGCATGAACTATATCATTT+TGG 0.240575 6:-1891198 MsG0680030415.01.T01:three_prime_UTR
GGCAGGCCAAATTCTTTGGT+AGG 0.525859 6:-1891177 MsG0680030415.01.T01:three_prime_UTR
GGTAGGTGCAAGATTGCACA+TGG 0.627527 6:-1891160 MsG0680030415.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAAAAAAAAAAAAAA+TGG + Chr6:1891454-1891473 None:intergenic 0.0%
!! ATTCATATTTAAAAATATCA+TGG + Chr6:1894860-1894879 None:intergenic 10.0%
!!! ATGCTTTTTTTATTTTAATT+TGG + Chr6:1891133-1891152 None:intergenic 10.0%
!!! CTTATTTTTATATTTTTGAT+AGG + Chr6:1893727-1893746 None:intergenic 10.0%
!! ATAATGAATAAAGATTACAA+AGG + Chr6:1893587-1893606 None:intergenic 15.0%
!! ATTATACAAAGCAAAATAAA+GGG - Chr6:1894021-1894040 MsG0680030415.01.T01:intron 15.0%
!! CTAAATATTTATACATTTGT+AGG - Chr6:1894557-1894576 MsG0680030415.01.T01:intron 15.0%
!! TAATGAATAAAGATTACAAA+GGG + Chr6:1893586-1893605 None:intergenic 15.0%
!! TATTATACAAAGCAAAATAA+AGG - Chr6:1894020-1894039 MsG0680030415.01.T01:intron 15.0%
!! TGGAAAATATGAAAAAAATA+TGG + Chr6:1893937-1893956 None:intergenic 15.0%
!!! ATGGTATGAATTTTTAAATA+TGG - Chr6:1894892-1894911 MsG0680030415.01.T01:intron 15.0%
!!! GTAAAAATTCTTTTTAATGA+TGG - Chr6:1892175-1892194 MsG0680030415.01.T01:intron 15.0%
!!! TAAATATGGAATGAAATTTT+TGG - Chr6:1894906-1894925 MsG0680030415.01.T01:intron 15.0%
!! AATAATTTCTTACATAACCT+GGG - Chr6:1894324-1894343 MsG0680030415.01.T01:intron 20.0%
!! ATAAAACAAAACTAAGACAT+CGG + Chr6:1891759-1891778 None:intergenic 20.0%
!! TAGATTAAGTTCAAAGTAAA+GGG + Chr6:1893979-1893998 None:intergenic 20.0%
!! TGAGAAAATGACATAATTAA+AGG + Chr6:1891728-1891747 None:intergenic 20.0%
!! TTAGATTAAGTTCAAAGTAA+AGG + Chr6:1893980-1893999 None:intergenic 20.0%
!!! AAAATTCTTTTTAATGATGG+TGG - Chr6:1892178-1892197 MsG0680030415.01.T01:intron 20.0%
!!! ACTACAATTAAATTGTGTTT+TGG - Chr6:1895088-1895107 MsG0680030415.01.T01:intron 20.0%
!!! ACTTCTTATTTTGGAAATTA+TGG - Chr6:1894951-1894970 MsG0680030415.01.T01:intron 20.0%
!!! ATGTATAAATATTTAGCTTG+TGG + Chr6:1894553-1894572 None:intergenic 20.0%
!!! CAGTTATGTTGATTAATTTT+AGG - Chr6:1894996-1895015 MsG0680030415.01.T01:intron 20.0%
!!! CGTTATAATGTTCTTTTTAA+CGG - Chr6:1893215-1893234 MsG0680030415.01.T01:intron 20.0%
!!! GTATTTTGATATGTTATGTT+GGG - Chr6:1892320-1892339 MsG0680030415.01.T01:CDS 20.0%
!!! GTTATAATGTTCTTTTTAAC+GGG - Chr6:1893216-1893235 MsG0680030415.01.T01:intron 20.0%
!!! TATTCTGAAATATGTTACTA+AGG - Chr6:1894787-1894806 MsG0680030415.01.T01:intron 20.0%
!!! TATTTTGATATGTTATGTTG+GGG - Chr6:1892321-1892340 MsG0680030415.01.T01:CDS 20.0%
! AAAAATTGGACAATTCATGA+CGG + Chr6:1894722-1894741 None:intergenic 25.0%
! AATATAAATAAATGCCTCAC+TGG + Chr6:1894004-1894023 None:intergenic 25.0%
! CAAACACTTGTAATATTGTT+TGG - Chr6:1892552-1892571 MsG0680030415.01.T01:intron 25.0%
! CAATAATTTCTTACATAACC+TGG - Chr6:1894323-1894342 MsG0680030415.01.T01:intron 25.0%
! CGCAAATTGAATTGAATAAA+AGG + Chr6:1893126-1893145 None:intergenic 25.0%
! TATGAAAAGATGTTACACAT+TGG - Chr6:1892888-1892907 MsG0680030415.01.T01:CDS 25.0%
! TATGAATGTCTATTGAAGTA+TGG - Chr6:1894873-1894892 MsG0680030415.01.T01:intron 25.0%
! TCAATAGGTGTAATGAAATT+GGG - Chr6:1894185-1894204 MsG0680030415.01.T01:intron 25.0%
! TCACTGAAAAATCAAGAAAT+GGG - Chr6:1891229-1891248 MsG0680030415.01.T01:intron 25.0%
! TCATTCAATATCACTTCTTT+GGG + Chr6:1894615-1894634 None:intergenic 25.0%
! TTAAAGGTAATCATATGTGT+CGG + Chr6:1891712-1891731 None:intergenic 25.0%
! TTATTCAATTCAATTTGCGA+GGG - Chr6:1893127-1893146 MsG0680030415.01.T01:intron 25.0%
! TTCAACGAGTAACTTAATTA+CGG - Chr6:1895197-1895216 MsG0680030415.01.T01:intron 25.0%
! TTCTAATTGTGTTATGTAGT+CGG - Chr6:1893536-1893555 MsG0680030415.01.T01:intron 25.0%
! TTTAGAGAAATTGAAACATC+TGG - Chr6:1892995-1893014 MsG0680030415.01.T01:intron 25.0%
! TTTATTCAATTCAATTTGCG+AGG - Chr6:1893126-1893145 MsG0680030415.01.T01:intron 25.0%
! TTTGAACACCAAATACTATA+AGG + Chr6:1893780-1893799 None:intergenic 25.0%
!! AACATTGTTACGAATGATTT+TGG + Chr6:1891356-1891375 None:intergenic 25.0%
!! AATGTGTAACATCTTTTCAT+AGG + Chr6:1892889-1892908 None:intergenic 25.0%
!! ATAGGCAAACTTTTCTTAAA+TGG + Chr6:1893709-1893728 None:intergenic 25.0%
!! ATGCATGAACTATATCATTT+TGG - Chr6:1895776-1895795 MsG0680030415.01.T01:five_prime_UTR 25.0%
!! ATGCATGAACTATATCATTT+TGG + Chr6:1895795-1895776 None:intergenic 25.0%
!! TAGGCAAACTTTTCTTAAAT+GGG + Chr6:1893708-1893727 None:intergenic 25.0%
!! TTATGTCTATAAGTCCTTTT+CGG - Chr6:1892836-1892855 MsG0680030415.01.T01:CDS 25.0%
!! TTGTGATATTGGATTTTGTT+TGG - Chr6:1894229-1894248 MsG0680030415.01.T01:intron 25.0%
!!! AATTGTCAGACTTCTTATTT+TGG - Chr6:1894942-1894961 MsG0680030415.01.T01:intron 25.0%
!!! AGCTTGATTTGTAATTGATT+GGG - Chr6:1893058-1893077 MsG0680030415.01.T01:intron 25.0%
!!! CTTATTTCTAAAAGCTCTTT+AGG - Chr6:1892621-1892640 MsG0680030415.01.T01:intron 25.0%
!!! GGTATTTTGATATGTTATGT+TGG - Chr6:1892319-1892338 MsG0680030415.01.T01:CDS 25.0%
!!! TAGTAACTGACTTTTATTGA+TGG + Chr6:1895072-1895091 None:intergenic 25.0%
AAACATTAACATCGACACAT+CGG + Chr6:1891643-1891662 None:intergenic 30.0%
AAAGAATCTTGTAATGACTG+AGG - Chr6:1894292-1894311 MsG0680030415.01.T01:intron 30.0%
AAGGTGACATTCAAATACTT+CGG + Chr6:1893358-1893377 None:intergenic 30.0%
AATAAGCTGAAAACAGCTTA+TGG + Chr6:1892607-1892626 None:intergenic 30.0%
AATAAGTTTCGCATTTAGTG+TGG - Chr6:1893162-1893181 MsG0680030415.01.T01:intron 30.0%
AATACTATAAGGATGCATTC+TGG + Chr6:1893769-1893788 None:intergenic 30.0%
ACATAAACCAAGACTAAGAT+AGG + Chr6:1893283-1893302 None:intergenic 30.0%
ACATGCATATCTATATGATG+AGG - Chr6:1892708-1892727 MsG0680030415.01.T01:intron 30.0%
ACTAATTATGTGTGTAGAAG+TGG - Chr6:1892102-1892121 MsG0680030415.01.T01:intron 30.0%
ACTTAATTACGGTCAATAAC+CGG - Chr6:1895208-1895227 MsG0680030415.01.T01:intron 30.0%
ATATAGATTACCTGTGTTTG+TGG - Chr6:1895376-1895395 MsG0680030415.01.T01:intron 30.0%
ATGGCAAGAATACATAAAAC+AGG + Chr6:1893918-1893937 None:intergenic 30.0%
CAAAGAAGTGATATTGAATG+AGG - Chr6:1894614-1894633 MsG0680030415.01.T01:intron 30.0%
CAATAGGTGTAATGAAATTG+GGG - Chr6:1894186-1894205 MsG0680030415.01.T01:intron 30.0%
CATGCATATCTATATGATGA+GGG - Chr6:1892709-1892728 MsG0680030415.01.T01:intron 30.0%
CTAAGATCACACATCAAATA+CGG + Chr6:1892492-1892511 None:intergenic 30.0%
CTCACTGAAAAATCAAGAAA+TGG - Chr6:1891228-1891247 MsG0680030415.01.T01:intron 30.0%
CTCATTCAATATCACTTCTT+TGG + Chr6:1894616-1894635 None:intergenic 30.0%
CTCTGTTATATCTTTCTCTT+GGG - Chr6:1893881-1893900 MsG0680030415.01.T01:intron 30.0%
CTTATTGCAATAAGTTCACT+GGG - Chr6:1892859-1892878 MsG0680030415.01.T01:CDS 30.0%
GAACATAGATAAGATTGTAG+TGG - Chr6:1892298-1892317 MsG0680030415.01.T01:intron 30.0%
GAATGCATCCTTATAGTATT+TGG - Chr6:1893769-1893788 MsG0680030415.01.T01:intron 30.0%
GTCAATAGGTGTAATGAAAT+TGG - Chr6:1894184-1894203 MsG0680030415.01.T01:intron 30.0%
GTGTGATCTTAGTAACTAAT+TGG - Chr6:1892500-1892519 MsG0680030415.01.T01:intron 30.0%
GTTCACAAAAATGTTGTATG+TGG - Chr6:1892969-1892988 MsG0680030415.01.T01:intron 30.0%
TCTCTGTTATATCTTTCTCT+TGG - Chr6:1893880-1893899 MsG0680030415.01.T01:intron 30.0%
TGATATTGAATGAGGTGAAA+CGG - Chr6:1894622-1894641 MsG0680030415.01.T01:intron 30.0%
TGATCAAATTCATCATCTCA+GGG + Chr6:1893822-1893841 None:intergenic 30.0%
TTATATCTTTCTCTTGGGTT+CGG - Chr6:1893886-1893905 MsG0680030415.01.T01:intron 30.0%
TTGAAAGTAATCACATGTGT+CGG + Chr6:1891596-1891615 None:intergenic 30.0%
! GATTCAACACGAATTTTCAA+GGG - Chr6:1893312-1893331 MsG0680030415.01.T01:intron 30.0%
! TAATGTTCTTTTTAACGGGA+AGG - Chr6:1893220-1893239 MsG0680030415.01.T01:intron 30.0%
!! ATGAACTATATCATTTTGGC+AGG - Chr6:1895780-1895799 MsG0680030415.01.T01:five_prime_UTR 30.0%
!! GAAAGTTTGGTTTGTTACTT+AGG - Chr6:1892769-1892788 MsG0680030415.01.T01:intron 30.0%
!! GAGCTTGATTTGTAATTGAT+TGG - Chr6:1893057-1893076 MsG0680030415.01.T01:intron 30.0%
!! TATTGTTTGTTTGCTGTTGT+TGG - Chr6:1893651-1893670 MsG0680030415.01.T01:intron 30.0%
!! TTAGTCTTGGTTTATGTGTA+GGG - Chr6:1893286-1893305 MsG0680030415.01.T01:intron 30.0%
AACTCGTTCTCTTCTTCAAA+TGG + Chr6:1891206-1891225 None:intergenic 35.0%
AACTTATCCATAAGCACTAG+TGG - Chr6:1894255-1894274 MsG0680030415.01.T01:intron 35.0%
AATAGGCTATCAAAAACGAG+AGG + Chr6:1893845-1893864 None:intergenic 35.0%
ACACGCTCCATTTCTTTATT+GGG - Chr6:1893494-1893513 MsG0680030415.01.T01:intron 35.0%
ACTTGTGTTTCGTTTCTTGT+AGG - Chr6:1894064-1894083 MsG0680030415.01.T01:intron 35.0%
AGTTCAAAGTAAAGGGACAA+TGG + Chr6:1893972-1893991 None:intergenic 35.0%
ATACTTCGGATACAAACAAG+TGG + Chr6:1893344-1893363 None:intergenic 35.0%
ATCTGTCAATCCTCTATTGT+GGG - Chr6:1893609-1893628 MsG0680030415.01.T01:intron 35.0%
CACAATTAGAATTGATCTCC+TGG + Chr6:1893527-1893546 None:intergenic 35.0%
CAGAACATAACAACTCAAAC+CGG + Chr6:1895230-1895249 None:intergenic 35.0%
CGAAATACTAGTCATCAACA+GGG + Chr6:1895349-1895368 None:intergenic 35.0%
CTGCAGACAGATACAAATAA+AGG + Chr6:1895522-1895541 None:intergenic 35.0%
CTTAATCAAGCACAATGCAT+AGG + Chr6:1892737-1892756 None:intergenic 35.0%
CTTATTGCAATAAGCCGAAA+AGG + Chr6:1892853-1892872 None:intergenic 35.0%
CTTCCAACAACTAGTAAATC+TGG + Chr6:1894654-1894673 None:intergenic 35.0%
GAAAGATACTTTCCCTCAAT+AGG + Chr6:1893862-1893881 None:intergenic 35.0%
GAACATGAAACAGCAAGAAA+AGG - Chr6:1894132-1894151 MsG0680030415.01.T01:intron 35.0%
GAACTTAATCTAATCCAGTG+AGG - Chr6:1893987-1894006 MsG0680030415.01.T01:intron 35.0%
GAAGGTTGTGAATTGTTTAG+AGG - Chr6:1893238-1893257 MsG0680030415.01.T01:intron 35.0%
GACTAAGATAGGTGTTTGAT+AGG + Chr6:1893272-1893291 None:intergenic 35.0%
GATATTGAATGAGGTGAAAC+GGG - Chr6:1894623-1894642 MsG0680030415.01.T01:intron 35.0%
GATCAAATTCATCATCTCAG+GGG + Chr6:1893821-1893840 None:intergenic 35.0%
GATGACTAGTATTTCGACAT+TGG - Chr6:1895353-1895372 MsG0680030415.01.T01:intron 35.0%
GATTTGTAATTGATTGGGAG+TGG - Chr6:1893063-1893082 MsG0680030415.01.T01:intron 35.0%
GCATTTAGTGTGGTTAACAA+CGG - Chr6:1893172-1893191 MsG0680030415.01.T01:intron 35.0%
GCTTATTGCAATAAGTTCAC+TGG - Chr6:1892858-1892877 MsG0680030415.01.T01:CDS 35.0%
GTGATCAAATTCATCATCTC+AGG + Chr6:1893823-1893842 None:intergenic 35.0%
TAAAGGGAACTGCAATCTAA+TGG - Chr6:1894037-1894056 MsG0680030415.01.T01:intron 35.0%
TACAAAGCTATCTGCTTGTA+TGG - Chr6:1895565-1895584 MsG0680030415.01.T01:intron 35.0%
TACACGCTCCATTTCTTTAT+TGG - Chr6:1893493-1893512 MsG0680030415.01.T01:intron 35.0%
TACTACTGATATCGATGTGT+CGG - Chr6:1891995-1892014 MsG0680030415.01.T01:intron 35.0%
TATCTGTCAATCCTCTATTG+TGG - Chr6:1893608-1893627 MsG0680030415.01.T01:intron 35.0%
TCAAACACCTATCTTAGTCT+TGG - Chr6:1893273-1893292 MsG0680030415.01.T01:intron 35.0%
TCAAGAAAAACATGCAGTCA+AGG - Chr6:1894423-1894442 MsG0680030415.01.T01:intron 35.0%
TCGAAATACTAGTCATCAAC+AGG + Chr6:1895350-1895369 None:intergenic 35.0%
TCGCTTGAAGTTTCATATAC+TGG - Chr6:1895145-1895164 MsG0680030415.01.T01:intron 35.0%
TTCTGCTCTACTTGTGATAT+TGG - Chr6:1894218-1894237 MsG0680030415.01.T01:intron 35.0%
TTGAGCAAGATGCAAACAAT+TGG + Chr6:1893021-1893040 None:intergenic 35.0%
! AGAGATCATGCACATACTTT+TGG + Chr6:1894695-1894714 None:intergenic 35.0%
! ATGGATTAAGAGAGAAAGAG+AGG + Chr6:1891435-1891454 None:intergenic 35.0%
! CTTGATTAAGTTGTTTGTCG+AGG - Chr6:1892747-1892766 MsG0680030415.01.T01:intron 35.0%
! GAATGTGTCTGATGATGTAA+TGG - Chr6:1892139-1892158 MsG0680030415.01.T01:intron 35.0%
! GCTACTTTCATAAGCTATGA+TGG + Chr6:1892445-1892464 None:intergenic 35.0%
! GGATTCAACACGAATTTTCA+AGG - Chr6:1893311-1893330 MsG0680030415.01.T01:intron 35.0%
! TCTTTTACCACTAGTGCTTA+TGG + Chr6:1894265-1894284 None:intergenic 35.0%
! TTGAGTTGTTATGTTCTGCA+GGG - Chr6:1895232-1895251 MsG0680030415.01.T01:intron 35.0%
! TTTCATAAGCTATGATGGAG+AGG + Chr6:1892440-1892459 None:intergenic 35.0%
! TTTTGGCAAGCCAAAATCTT+TGG + Chr6:1895661-1895680 None:intergenic 35.0%
!! ATATTTAGCTTGTGGTCAAG+TGG + Chr6:1894545-1894564 None:intergenic 35.0%
!! CGTTTTTGATAGCCTATTGA+GGG - Chr6:1893847-1893866 MsG0680030415.01.T01:intron 35.0%
!! CTTAGTCTTGGTTTATGTGT+AGG - Chr6:1893285-1893304 MsG0680030415.01.T01:intron 35.0%
!! TCATGCACATACTTTTGGAA+AGG + Chr6:1894690-1894709 None:intergenic 35.0%
!! TCGTTTTTGATAGCCTATTG+AGG - Chr6:1893846-1893865 MsG0680030415.01.T01:intron 35.0%
!! TGTTACTTAGGAAGTGTTTG+TGG - Chr6:1892781-1892800 MsG0680030415.01.T01:intron 35.0%
!! TTTGAGTTGTTATGTTCTGC+AGG - Chr6:1895231-1895250 MsG0680030415.01.T01:intron 35.0%
AAACAGCAAGAAAAGGCTAG+AGG - Chr6:1894139-1894158 MsG0680030415.01.T01:intron 40.0%
AACAGCAAGAAAAGGCTAGA+GGG - Chr6:1894140-1894159 MsG0680030415.01.T01:intron 40.0%
AACATGCAGTCAAGGAATCT+CGG - Chr6:1894431-1894450 MsG0680030415.01.T01:intron 40.0%
ACCTCCACCCAATAAAGAAA+TGG + Chr6:1893504-1893523 None:intergenic 40.0%
AGACTCTTTGTGAGAGCTTA+TGG - Chr6:1892366-1892385 MsG0680030415.01.T01:CDS 40.0%
ATCAATTGTGTCGTCGTTGT+TGG + Chr6:1891845-1891864 None:intergenic 40.0%
ATCTCAGGGGATGTTGATAT+TGG + Chr6:1893808-1893827 None:intergenic 40.0%
ATGTTATGTTGGGGCATGTT+TGG - Chr6:1892330-1892349 MsG0680030415.01.T01:CDS 40.0%
CAATGCAGATGAAACTCCAA+GGG - Chr6:1895322-1895341 MsG0680030415.01.T01:intron 40.0%
CATCCTTCAATCAGTAGCAA+AGG - Chr6:1891310-1891329 MsG0680030415.01.T01:intron 40.0%
CGTCCAGATTTACTAGTTGT+TGG - Chr6:1894648-1894667 MsG0680030415.01.T01:intron 40.0%
CGTGGATAGTATCTATGCAT+CGG - Chr6:1894096-1894115 MsG0680030415.01.T01:intron 40.0%
CTGTTTGATCTGCATCTGAT+TGG - Chr6:1894506-1894525 MsG0680030415.01.T01:intron 40.0%
CTTGCACCTACCAAAGAATT+TGG + Chr6:1895806-1895825 None:intergenic 40.0%
GAAGACGCGTCTTTATGTAT+AGG - Chr6:1891518-1891537 MsG0680030415.01.T01:three_prime_UTR 40.0%
GACAATGGATCACAAGTGAA+TGG + Chr6:1893957-1893976 None:intergenic 40.0%
GAGCTTATGGAAGCAGTTTA+TGG - Chr6:1892379-1892398 MsG0680030415.01.T01:CDS 40.0%
GATAACCTTTCAAGCTTGAC+TGG + Chr6:1891288-1891307 None:intergenic 40.0%
GATGGAGAGGTTATGGAAAT+TGG + Chr6:1892427-1892446 None:intergenic 40.0%
GCTGTCCAATCTTCATCTAA+CGG + Chr6:1894457-1894476 None:intergenic 40.0%
GGTGTATCACTATCATGTGT+CGG - Chr6:1891539-1891558 MsG0680030415.01.T01:three_prime_UTR 40.0%
GGTTGTGAATTGTTTAGAGG+TGG - Chr6:1893241-1893260 MsG0680030415.01.T01:intron 40.0%
GTGGATAGTATCTATGCATC+GGG - Chr6:1894097-1894116 MsG0680030415.01.T01:intron 40.0%
GTTGTTTGTCGAGGAAAGTT+TGG - Chr6:1892756-1892775 MsG0680030415.01.T01:intron 40.0%
TACTCGTATCAGTTTGTGTG+CGG - Chr6:1893409-1893428 MsG0680030415.01.T01:intron 40.0%
TATGTGTGTAGAAGTGGTTG+TGG - Chr6:1892108-1892127 MsG0680030415.01.T01:intron 40.0%
TCAATTTGCGAGGGTAAGAA+AGG - Chr6:1893136-1893155 MsG0680030415.01.T01:intron 40.0%
TCAGACTGACACATGAAGTA+TGG + Chr6:1891674-1891693 None:intergenic 40.0%
TCCATTTCTTTATTGGGTGG+AGG - Chr6:1893500-1893519 MsG0680030415.01.T01:intron 40.0%
TCTTCACAATCCCACAATAG+AGG + Chr6:1893622-1893641 None:intergenic 40.0%
TCTTGGTTTATGTGTAGGGA+GGG - Chr6:1893290-1893309 MsG0680030415.01.T01:intron 40.0%
TGATGTTAACGTGTCAGTGT+TGG - Chr6:1891893-1891912 MsG0680030415.01.T01:intron 40.0%
TGCTGGAATACTTCGTCAAT+AGG - Chr6:1894170-1894189 MsG0680030415.01.T01:intron 40.0%
TGTATGCAGTTGTTCAGTGT+AGG - Chr6:1895443-1895462 MsG0680030415.01.T01:intron 40.0%
TGTGAAGCATGGATAAAGCA+GGG - Chr6:1894585-1894604 MsG0680030415.01.T01:intron 40.0%
TTACTAGTTGTTGGAAGCAG+AGG - Chr6:1894657-1894676 MsG0680030415.01.T01:intron 40.0%
TTGTAATTGATTGGGAGTGG+AGG - Chr6:1893066-1893085 MsG0680030415.01.T01:intron 40.0%
! AAGCTATGATGGAGAGGTTA+TGG + Chr6:1892434-1892453 None:intergenic 40.0%
! ATGTTCTGCAGGGTTTTTGT+TGG - Chr6:1895242-1895261 MsG0680030415.01.T01:intron 40.0%
! CTTGCACCTACCAAAGATTT+TGG - Chr6:1895648-1895667 MsG0680030415.01.T01:CDS 40.0%
! GATAGAAAAGCTAGTTTCCC+AGG + Chr6:1894344-1894363 None:intergenic 40.0%
! GCACGGTTAGTGAATTTTGT+TGG - Chr6:1895264-1895283 MsG0680030415.01.T01:intron 40.0%
! GCTCATATTTTCGACTGTCA+AGG - Chr6:1894475-1894494 MsG0680030415.01.T01:intron 40.0%
! GTTCAAGTTCCTGATGAAGA+CGG - Chr6:1891403-1891422 MsG0680030415.01.T01:three_prime_UTR 40.0%
! TCTTGTAGGTTATGATGACG+TGG - Chr6:1894078-1894097 MsG0680030415.01.T01:intron 40.0%
! TGCGTTTGATAGTCATGACA+GGG + Chr6:1895304-1895323 None:intergenic 40.0%
! TTGCGTTTGATAGTCATGAC+AGG + Chr6:1895305-1895324 None:intergenic 40.0%
! TTGCTACTGATTGAAGGATG+TGG + Chr6:1891310-1891329 None:intergenic 40.0%
! TTTTGGCAGGCCAAATTCTT+TGG - Chr6:1895793-1895812 MsG0680030415.01.T01:five_prime_UTR 40.0%
!! TAACAACGGCTTGGTGTATT+TGG - Chr6:1893186-1893205 MsG0680030415.01.T01:intron 40.0%
!! TTTTTCAGCTCCACAAACAC+AGG + Chr6:1895389-1895408 None:intergenic 40.0%
!!! CAGTGTTGGTGTGTCTTTTT+CGG - Chr6:1891907-1891926 MsG0680030415.01.T01:intron 40.0%
ACTCGTATCAGTTTGTGTGC+GGG - Chr6:1893410-1893429 MsG0680030415.01.T01:intron 45.0%
ACTTCATGTGTCAGTCTGAC+TGG - Chr6:1891675-1891694 MsG0680030415.01.T01:CDS 45.0%
AGATGTGTCTGGTGATTGTC+TGG - Chr6:1891812-1891831 MsG0680030415.01.T01:intron 45.0%
ATGTCACCTTCTTGCACTGT+TGG - Chr6:1893368-1893387 MsG0680030415.01.T01:intron 45.0%
CACATCTTCGATCAGAAGTG+TGG + Chr6:1891799-1891818 None:intergenic 45.0%
CGCTCCATTTCTTTATTGGG+TGG - Chr6:1893497-1893516 MsG0680030415.01.T01:intron 45.0%
CTGTGAAGCATGGATAAAGC+AGG - Chr6:1894584-1894603 MsG0680030415.01.T01:intron 45.0%
CTTCTGATCGAAGATGTGTC+TGG - Chr6:1891801-1891820 MsG0680030415.01.T01:intron 45.0%
GAAGCGACACGAGTTATGAT+TGG - Chr6:1891256-1891275 MsG0680030415.01.T01:intron 45.0%
GCAATGCAGATGAAACTCCA+AGG - Chr6:1895321-1895340 MsG0680030415.01.T01:intron 45.0%
GCGTCTTCCATCAGAAATGT+CGG + Chr6:1891506-1891525 None:intergenic 45.0%
GCTCAAAGACGTTGGATGTA+TGG - Chr6:1893035-1893054 MsG0680030415.01.T01:intron 45.0%
GGCAAGCCAAAATCTTTGGT+AGG + Chr6:1895657-1895676 None:intergenic 45.0%
GTCTTGGTTTATGTGTAGGG+AGG - Chr6:1893289-1893308 MsG0680030415.01.T01:intron 45.0%
GTGAACCAGTCAAGCTTGAA+AGG - Chr6:1891280-1891299 MsG0680030415.01.T01:intron 45.0%
TAGTGTGGTTAACAACGGCT+TGG - Chr6:1893177-1893196 MsG0680030415.01.T01:intron 45.0%
TGCATCTTGCTCAAAGACGT+TGG - Chr6:1893027-1893046 MsG0680030415.01.T01:intron 45.0%
TTGTGTTATGTAGTCGGCGA+TGG - Chr6:1893542-1893561 MsG0680030415.01.T01:intron 45.0%
! CGGTGTCAGACACTTTGAAT+CGG - Chr6:1891559-1891578 MsG0680030415.01.T01:three_prime_UTR 45.0%
! GCACCTTTGCTACTGATTGA+AGG + Chr6:1891316-1891335 None:intergenic 45.0%
!! AACGGCTTGGTGTATTTGGT+TGG - Chr6:1893190-1893209 MsG0680030415.01.T01:intron 45.0%
!! ATGTGTCGGTGTTAGTGTGT+CGG - Chr6:1892009-1892028 MsG0680030415.01.T01:intron 45.0%
!! GATGGTCTTGTGCTGACAAT+TGG - Chr6:1893560-1893579 MsG0680030415.01.T01:intron 45.0%
!! GTAGCAAAGGTGCTTTCGAT+TGG - Chr6:1891323-1891342 MsG0680030415.01.T01:intron 45.0%
!! TGTAGCACCGACATTTCTGA+TGG - Chr6:1891496-1891515 MsG0680030415.01.T01:three_prime_UTR 45.0%
!! AAAAAAAAAATAAATTCAAA+CGG + Chr6:1892670-1892689 None:intergenic 5.0%
!!! GAATTTTTTAATAAAAAAAT+TGG + Chr6:1894736-1894755 None:intergenic 5.0%
ACCTGAACTGAAGGGTTGTG+GGG - Chr6:1893449-1893468 MsG0680030415.01.T01:intron 50.0%
AGGAACTGACCGTCTTCATC+AGG + Chr6:1891415-1891434 None:intergenic 50.0%
CCACTACCAACAGTGCAAGA+AGG + Chr6:1893377-1893396 None:intergenic 50.0%
CTCGGCCGTTAGATGAAGAT+TGG - Chr6:1894449-1894468 MsG0680030415.01.T01:intron 50.0%
GACCTGAACTGAAGGGTTGT+GGG - Chr6:1893448-1893467 MsG0680030415.01.T01:intron 50.0%
GGCAGGCCAAATTCTTTGGT+AGG - Chr6:1895797-1895816 MsG0680030415.01.T01:five_prime_UTR 50.0%
GGTAGGTGCAAGATTGCACA+TGG - Chr6:1895814-1895833 MsG0680030415.01.T01:five_prime_UTR 50.0%
GGTAGGTGCAAGATTGCACA+TGG + Chr6:1895833-1895814 None:intergenic 50.0%
GTTGTTGGAAGCAGAGGTCT+TGG - Chr6:1894663-1894682 MsG0680030415.01.T01:intron 50.0%
TAGTCATCAACAGGGTCCCT+TGG + Chr6:1895341-1895360 None:intergenic 50.0%
TATCAGTTTGTGTGCGGGTC+TGG - Chr6:1893415-1893434 MsG0680030415.01.T01:intron 50.0%
TCTTTATTGGGTGGAGGTCC+AGG - Chr6:1893506-1893525 MsG0680030415.01.T01:intron 50.0%
TGTAGGTGAGCTGTGAAGCA+TGG - Chr6:1894574-1894593 MsG0680030415.01.T01:intron 50.0%
TTGCAGGGACCTGAACTGAA+GGG - Chr6:1893441-1893460 MsG0680030415.01.T01:intron 50.0%
TTTGCAGGGACCTGAACTGA+AGG - Chr6:1893440-1893459 MsG0680030415.01.T01:intron 50.0%
! CCTTCTTGCACTGTTGGTAG+TGG - Chr6:1893374-1893393 MsG0680030415.01.T01:intron 50.0%
! CTGCAGGGTTTTTGTTGGCA+CGG - Chr6:1895247-1895266 MsG0680030415.01.T01:intron 50.0%
!! AGTGTGTCGGTGTTGATGCT+TGG - Chr6:1892022-1892041 MsG0680030415.01.T01:intron 50.0%
GGACCTGAACTGAAGGGTTG+TGG - Chr6:1893447-1893466 MsG0680030415.01.T01:intron 55.0%
TGATTGGGAGTGGAGGCTGA+AGG - Chr6:1893073-1893092 MsG0680030415.01.T01:intron 55.0%
!! CTTGCACTGTTGGTAGTGGC+TGG - Chr6:1893378-1893397 MsG0680030415.01.T01:intron 55.0%
GAACTGAAGGGTTGTGGGGC+TGG - Chr6:1893453-1893472 MsG0680030415.01.T01:intron 60.0%
GCCCCACAACCCTTCAGTTC+AGG + Chr6:1893453-1893472 None:intergenic 60.0%
GGCTAGAGGGACTCATCTGC+TGG - Chr6:1894153-1894172 MsG0680030415.01.T01:intron 60.0%
GGGAGTGGAGGCTGAAGGTT+GGG - Chr6:1893078-1893097 MsG0680030415.01.T01:intron 60.0%
GTGCGGGTCTGGTGTTTGCA+GGG - Chr6:1893426-1893445 MsG0680030415.01.T01:intron 60.0%
GTGGAGGCTGAAGGTTGGGA+TGG - Chr6:1893082-1893101 MsG0680030415.01.T01:intron 60.0%
TGGGAGTGGAGGCTGAAGGT+TGG - Chr6:1893077-1893096 MsG0680030415.01.T01:intron 60.0%
TGTGCGGGTCTGGTGTTTGC+AGG - Chr6:1893425-1893444 MsG0680030415.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr6 gene 1891127 1895869 1891127 ID=MsG0680030415.01;Name=MsG0680030415.01
Chr6 mRNA 1891127 1895869 1891127 ID=MsG0680030415.01.T01;Parent=MsG0680030415.01;Name=MsG0680030415.01.T01;_AED=0.41;_eAED=0.41;_QI=120|1|1|1|0.75|0.6|5|370|175
Chr6 exon 1891127 1891226 1891127 ID=MsG0680030415.01.T01:exon:2783;Parent=MsG0680030415.01.T01
Chr6 five_prime_UTR 1895750 1895869 1895750 ID=MsG0680030415.01.T01:five_prime_utr;Parent=MsG0680030415.01.T01
Chr6 CDS 1895572 1895749 1895572 ID=MsG0680030415.01.T01:cds;Parent=MsG0680030415.01.T01
Chr6 CDS 1892789 1892910 1892789 ID=MsG0680030415.01.T01:cds;Parent=MsG0680030415.01.T01
Chr6 CDS 1892299 1892417 1892299 ID=MsG0680030415.01.T01:cds;Parent=MsG0680030415.01.T01
Chr6 CDS 1891635 1891743 1891635 ID=MsG0680030415.01.T01:cds;Parent=MsG0680030415.01.T01
Chr6 three_prime_UTR 1891365 1891634 1891365 ID=MsG0680030415.01.T01:three_prime_utr;Parent=MsG0680030415.01.T01
Chr6 three_prime_UTR 1891127 1891226 1891127 ID=MsG0680030415.01.T01:three_prime_utr;Parent=MsG0680030415.01.T01
Chr6 mRNA 1891160 1895869 1891160 ID=MsG0680030415.01.T02;Parent=MsG0680030415.01;Name=MsG0680030415.01.T02;_AED=0.41;_eAED=0.41;_QI=120|1|1|1|0.75|0.6|5|352|175
Chr6 exon 1891160 1891241 1891160 ID=MsG0680030415.01.T02:exon:2784;Parent=MsG0680030415.01.T02
Chr6 five_prime_UTR 1895750 1895869 1895750 ID=MsG0680030415.01.T02:five_prime_utr;Parent=MsG0680030415.01.T02
Chr6 CDS 1895572 1895749 1895572 ID=MsG0680030415.01.T02:cds;Parent=MsG0680030415.01.T02
Chr6 CDS 1892789 1892910 1892789 ID=MsG0680030415.01.T02:cds;Parent=MsG0680030415.01.T02
Chr6 CDS 1892299 1892417 1892299 ID=MsG0680030415.01.T02:cds;Parent=MsG0680030415.01.T02
Chr6 CDS 1891635 1891743 1891635 ID=MsG0680030415.01.T02:cds;Parent=MsG0680030415.01.T02
Chr6 three_prime_UTR 1891365 1891634 1891365 ID=MsG0680030415.01.T02:three_prime_utr;Parent=MsG0680030415.01.T02
Chr6 three_prime_UTR 1891160 1891241 1891160 ID=MsG0680030415.01.T02:three_prime_utr;Parent=MsG0680030415.01.T02
Gene Sequence

>MsG0680030415.01.T01

ATGGGAGAAGAAGCGACACGAGTTATGATTGGAGTGAACCAGTCAAGCTTGAAAGGTTATCCACATCCTTCAATCAGTAGCAAAGGTGCTTTCGATTGGACTGTTTCCAAAATCATTCGTAACAATGTTTCTGCTTTTCATCTTCTTTTTCTTCATGTTCAAGTTCCTGATGAAGACGGTTATGATGACGTGGATAGTATCTATGCATCGGGTGAAGACTTTAAGAACATGAAACAGCAAGAAAAGGCTAGAGGGACTCATCTGCTGGAATACTTCGTCAATAGGTGTAATGAAATTGGGGTGAGCTGTGAAGCATGGATAAAGCAGGGTGATCCCAAAGAAGTGATATTGAATGAGGTGAAACGGGTTCGTCCAGATTTACTAGTTGTTGGAAGCAGAGGTCTTGGACCTTTCCAAAAGGTTTTTGTTGGCACGGTTAGTGAATTTTGTTGGAAGCATGCTGAATGCCCTGTCATGACTATCAAACGCAATGCAGATGAAACTCCAAGGGACCCTGTTGATGACTAG

>MsG0680030415.01.T02

ATGGGAGAAGAAGCGACACGAGTTATGATTGGAGTGAACCAGTCAAGCTTGAAAGGTTATCCACATCCTTCAATCAGTAGCAAAGGTGCTTTCGATTGGACTGTTTCCAAAATCATTCGTAACAATGTTTCTGCTTTTCATCTTCTTTTTCTTCATGTTCAAGTTCCTGATGAAGACGGTTATGATGACGTGGATAGTATCTATGCATCGGGTGAAGACTTTAAGAACATGAAACAGCAAGAAAAGGCTAGAGGGACTCATCTGCTGGAATACTTCGTCAATAGGTGTAATGAAATTGGGGTGAGCTGTGAAGCATGGATAAAGCAGGGTGATCCCAAAGAAGTGATATTGAATGAGGTGAAACGGGTTCGTCCAGATTTACTAGTTGTTGGAAGCAGAGGTCTTGGACCTTTCCAAAAGGTTTTTGTTGGCACGGTTAGTGAATTTTGTTGGAAGCATGCTGAATGCCCTGTCATGACTATCAAACGCAATGCAGATGAAACTCCAAGGGACCCTGTTGATGACTAG

Protein sequence

>MsG0680030415.01.T01

MGEEATRVMIGVNQSSLKGYPHPSISSKGAFDWTVSKIIRNNVSAFHLLFLHVQVPDEDGYDDVDSIYASGEDFKNMKQQEKARGTHLLEYFVNRCNEIGVSCEAWIKQGDPKEVILNEVKRVRPDLLVVGSRGLGPFQKVFVGTVSEFCWKHAECPVMTIKRNADETPRDPVDD*

>MsG0680030415.01.T02

MGEEATRVMIGVNQSSLKGYPHPSISSKGAFDWTVSKIIRNNVSAFHLLFLHVQVPDEDGYDDVDSIYASGEDFKNMKQQEKARGTHLLEYFVNRCNEIGVSCEAWIKQGDPKEVILNEVKRVRPDLLVVGSRGLGPFQKVFVGTVSEFCWKHAECPVMTIKRNADETPRDPVDD*