AlfalfaGEDB | MsG0480023660.01

M. sativa cultivar ZhongmuNo.1 / MsG0480023660.01

KEGG: -
GO: GO:0003677
PFAM: PF00179 PF01388

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023660.01.T01	XP_039685247.1	95.302	596	28	0	547	1142	1	596	0	1177
MsG0480023660.01.T01	XP_039685247.1	69.258	283	57	4	127	380	315	596	3.14E-113	375

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023660.01.T01	Q9LDD4	34.472	615	321	16	564	1141	4	573	5.50E-92	310

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023660.01.T01	A0A072U5F3	95.302	596	28	0	547	1142	1	596	0.0	1177

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TFs/TRs:

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Gene ID	Type	Classification
MsG0480023660.01.T01	TR	ARID

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047791.01	MsG0480023660.01	0.833242	5.969315e-56	6.834103e-53
MsG0080048065.01	MsG0480023660.01	0.824393	8.268750e-54	7.314251e-51
MsG0080048152.01	MsG0480023660.01	0.809131	2.201560e-50	1.282101e-47
MsG0080048683.01	MsG0480023660.01	0.836027	1.190035e-56	1.481155e-53
MsG0080048761.01	MsG0480023660.01	-0.827058	1.929570e-54	1.842181e-51
MsG0080048826.01	MsG0480023660.01	0.826920	2.081079e-54	1.979035e-51
MsG0080048849.01	MsG0480023660.01	0.825788	3.871490e-54	3.564424e-51
MsG0080048878.01	MsG0480023660.01	0.842185	3.017733e-58	4.538951e-55
MsG0080049011.01	MsG0480023660.01	0.841811	3.788919e-58	5.632084e-55
MsG0080049069.01	MsG0480023660.01	0.836315	1.005857e-56	1.263109e-53

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023660.01.T01	MTR_8g098605	95.302	596	28	0	547	1142	1	596	0.0	1177
MsG0480023660.01.T01	MTR_8g098605	69.258	283	57	4	127	380	315	596	3.81e-117	375
MsG0480023660.01.T01	MTR_1g073380	71.429	616	126	6	547	1136	1	592	0.0	865
MsG0480023660.01.T01	MTR_1g073380	58.430	344	79	6	89	373	253	591	1.09e-112	363
MsG0480023660.01.T01	MTR_1g073380	43.689	103	47	3	406	498	182	283	3.19e-11	67.8
MsG0480023660.01.T01	MTR_1g073530	68.831	616	132	7	547	1136	1	582	0.0	822
MsG0480023660.01.T01	MTR_1g073530	54.519	343	92	10	85	373	249	581	2.83e-97	322
MsG0480023660.01.T01	MTR_1g073590	69.156	616	127	10	547	1136	1	579	0.0	814
MsG0480023660.01.T01	MTR_1g073590	55.490	337	88	10	89	373	252	578	3.53e-98	324
MsG0480023660.01.T01	MTR_1g073590	45.631	103	45	3	406	498	181	282	4.41e-11	67.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023660.01.T01	AT4G11400	34.472	615	321	16	564	1141	4	573	5.61e-93	310
MsG0480023660.01.T01	AT4G11400	39.516	248	119	7	155	379	334	573	4.90e-43	166
MsG0480023660.01.T01	AT4G11400	34.472	615	321	16	564	1141	4	573	5.61e-93	310
MsG0480023660.01.T01	AT4G11400	39.516	248	119	7	155	379	334	573	4.90e-43	166
MsG0480023660.01.T01	AT2G46040	30.586	546	293	14	588	1108	47	531	1.53e-64	229
MsG0480023660.01.T01	AT2G46040	31.381	239	120	5	132	346	313	531	1.08e-25	114
MsG0480023660.01.T01	AT2G46040	30.586	546	293	14	588	1108	47	531	1.53e-64	229
MsG0480023660.01.T01	AT2G46040	31.381	239	120	5	132	346	313	531	1.08e-25	114
MsG0480023660.01.T01	AT2G46040	30.586	546	293	14	588	1108	61	545	2.22e-64	229
MsG0480023660.01.T01	AT2G46040	31.381	239	120	5	132	346	327	545	1.28e-25	113

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Find 229 sgRNAs with CRISPR-Local

Find 1382 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGTGGATCATCATCCA+AGG	0.637361	4:+88222167	MsG0480023660.01.T01:CDS
AAACAGTGGTTGTCTTGTTG+AGG	0.633404	4:+88221297	MsG0480023660.01.T01:CDS
AAACTACACCGGTCCATTGC+GGG	0.380026	4:-88206332	None:intergenic
AAAGAGATTTAAGGATGCAA+TGG	0.490346	4:+88224041	MsG0480023660.01.T01:CDS
AAAGTCGAGATGATCAATGA+TGG	0.584417	4:+88202989	MsG0480023660.01.T01:CDS
AAAGTGGAGATGATGAATGA+TGG	0.634442	4:+88219261	MsG0480023660.01.T01:CDS
AAATATCTGAGTGATTTCGA+AGG	0.658560	4:+88221598	MsG0480023660.01.T01:CDS
AAATTTGAATCATCTTTAAC+AGG	0.325129	4:-88223820	None:intergenic
AACAATGAGGAAGTTGAATT+TGG	0.251407	4:+88206798	MsG0480023660.01.T01:CDS
AACAGTCGCATTTGATATTT+TGG	0.099622	4:-88214959	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACACCTCATAGAAAAC+AGG	-	Chr4:88207363-88207382	None:intergenic	30.0%
AAAACACCTCATAGAAAACA+GGG	-	Chr4:88207362-88207381	None:intergenic	30.0%
AAAACTGTATGCTTTACAGA+AGG	+	Chr4:88206080-88206099	MsG0480023660.01.T01:intron	30.0%
AAAATTGCGTATATGATAGG+GGG	-	Chr4:88222793-88222812	None:intergenic	30.0%
AAAGAAGGAGAATGAAATGA+AGG	+	Chr4:88204837-88204856	MsG0480023660.01.T01:intron	30.0%
AAAGAGATTTAAGGATGCAA+TGG	+	Chr4:88224041-88224060	MsG0480023660.01.T01:CDS	30.0%
AAAGATATGAGAGTGACATT+AGG	-	Chr4:88210447-88210466	None:intergenic	30.0%
AAATATCTGAGTGATTTCGA+AGG	+	Chr4:88221598-88221617	MsG0480023660.01.T01:CDS	30.0%
AAATGTTCATTGAAACTTGC+AGG	-	Chr4:88208715-88208734	None:intergenic	30.0%
AAATTATGAGATCAAAGAGC+CGG	-	Chr4:88222869-88222888	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	88202392	88224341	88202392	ID=MsG0480023660.01;Name=MsG0480023660.01
Chr4	mRNA	88202392	88224341	88202392	ID=MsG0480023660.01.T01;Parent=MsG0480023660.01;Name=MsG0480023660.01.T01;_AED=0.50;_eAED=0.52;_QI=0\|0\|0\|1\|1\|1\|12\|0\|1142
Chr4	exon	88202392	88202540	88202392	ID=MsG0480023660.01.T01:exon:6240;Parent=MsG0480023660.01.T01
Chr4	exon	88202973	88203052	88202973	ID=MsG0480023660.01.T01:exon:6241;Parent=MsG0480023660.01.T01
Chr4	exon	88203536	88203650	88203536	ID=MsG0480023660.01.T01:exon:6242;Parent=MsG0480023660.01.T01
Chr4	exon	88204992	88205034	88204992	ID=MsG0480023660.01.T01:exon:6243;Parent=MsG0480023660.01.T01
Chr4	exon	88206099	88206360	88206099	ID=MsG0480023660.01.T01:exon:6244;Parent=MsG0480023660.01.T01
Chr4	exon	88206424	88206925	88206424	ID=MsG0480023660.01.T01:exon:6245;Parent=MsG0480023660.01.T01
Chr4	exon	88211513	88211592	88211513	ID=MsG0480023660.01.T01:exon:6246;Parent=MsG0480023660.01.T01
Chr4	exon	88214938	88215124	88214938	ID=MsG0480023660.01.T01:exon:6247;Parent=MsG0480023660.01.T01
Chr4	exon	88219245	88219324	88219245	ID=MsG0480023660.01.T01:exon:6248;Parent=MsG0480023660.01.T01
Chr4	exon	88219644	88219758	88219644	ID=MsG0480023660.01.T01:exon:6249;Parent=MsG0480023660.01.T01
Chr4	exon	88221213	88222188	88221213	ID=MsG0480023660.01.T01:exon:6250;Parent=MsG0480023660.01.T01
Chr4	exon	88223502	88224341	88223502	ID=MsG0480023660.01.T01:exon:6251;Parent=MsG0480023660.01.T01
Chr4	CDS	88202392	88202540	88202392	ID=MsG0480023660.01.T01:cds;Parent=MsG0480023660.01.T01
Chr4	CDS	88202973	88203052	88202973	ID=MsG0480023660.01.T01:cds;Parent=MsG0480023660.01.T01
Chr4	CDS	88203536	88203650	88203536	ID=MsG0480023660.01.T01:cds;Parent=MsG0480023660.01.T01
Chr4	CDS	88204992	88205034	88204992	ID=MsG0480023660.01.T01:cds;Parent=MsG0480023660.01.T01
Chr4	CDS	88206099	88206360	88206099	ID=MsG0480023660.01.T01:cds;Parent=MsG0480023660.01.T01
Chr4	CDS	88206424	88206925	88206424	ID=MsG0480023660.01.T01:cds;Parent=MsG0480023660.01.T01
Chr4	CDS	88211513	88211592	88211513	ID=MsG0480023660.01.T01:cds;Parent=MsG0480023660.01.T01
Chr4	CDS	88214938	88215124	88214938	ID=MsG0480023660.01.T01:cds;Parent=MsG0480023660.01.T01
Chr4	CDS	88219245	88219324	88219245	ID=MsG0480023660.01.T01:cds;Parent=MsG0480023660.01.T01
Chr4	CDS	88219644	88219758	88219644	ID=MsG0480023660.01.T01:cds;Parent=MsG0480023660.01.T01
Chr4	CDS	88221213	88222188	88221213	ID=MsG0480023660.01.T01:cds;Parent=MsG0480023660.01.T01
Chr4	CDS	88223502	88224341	88223502	ID=MsG0480023660.01.T01:cds;Parent=MsG0480023660.01.T01

Gene Sequence

>MsG0480023660.01.T01

ATGGTGAATGGTCGCCGGTGCACAAGACACGACAATGAGCGGCTCCCGACAACTTTTAGACGAACCGAATCACACCGGAATGAGATGGATCCCGAGGCCGTGCAGGTATGGGACTACATGGTTGAAGGAAAGCTTATAAGAATTATTTGGATGATGATTGATTACAAAGTCGAGATGATCAATGATGGCATGCAACAATTCTTTCTTGAATTCCATTGCCCAAAACACAGTCCATATCAAGAAGGTGTATGGAAGATAAGAGTGGAGCTACCTGATGTTTATCCTTATAAGTCTCCTTCTATGGGTTCTGTTAATAAAGTTTACCATCCTAATGTTGATGAAATCTTTAATTCTCGCAAACGTAAACGGGAATCGTTATCTGGAACGAAGGTGAAGATGCATCCTGCCATGTATAATAATCCTGTTCCCCTTGGTCACCAAGGTAGAGTGACATTGAGACGTAGTGAAAGGAGGCCTATCTCAGTCAAACCAGATGTCTTCATCCAAAAGAAAAAATCAACTGCCAAAGCAGATGTAACCAAAAAGAAAAAATCTGAGCCATCTTGGGATGATTCTCGTGAAAAGCTTGTTCATGTAGGTCGTCTTTTCCAAGCAGAAGTCCCGCAATGGACCGGTGTAGTTTATGAGAAAACAGATCTTGTTGGGAGAGGAAGACGAGGAAAGTGTAGCTGCAATGCTCAAGGTTCTGTTGACTGTGTCAGACTTCATATTGCTGCAAACAGGACCAAACTGAAGCTTGAATTGGGTTCTGCATTTTACCATTGGGGATTTGATAAAATGGGCGAAGAAGTTTCACTTCGATGGACAGCTGATGAAGAAAAGAGATTTAAGGATGCGATGAGGTTAAAAATCCCTTCCCAAAACAAGTCTTTTTGGAACAATCCATCCATATACTTCTTTCAAAGGAAGACAAGAAAAGACATGGTGAGCTATTGCTTCAATGTATATCTTATTCAACTAAGAAGCTATCAGAATCGAGTGACTCCGAAGACTGTTGACTGCAACAATGAGGAAGTTGAATTTGGATCGTTTGGTTATGGTTTCGGGATGAAAGCTATCAAGCATCCATCTATGGAATTCATGGAGTGTTCAGAGAACACACAATGCTTTGATTTTGAGGAGACAAGACAGTTGATGACTGATTACAAGGTGGAGATGATCAATGATTGCATGCAAGAGTTCTTTGTTGAATTCCATGTCCCTAAACACATAATTCTTTGGACACTGAAAACCAAAATATCAAATGCGACTGTTCAAAATGCTAACGGTAATGGTAATGACAATGACGATGAAATTTTCTGCACTGGTGTTAAGGATGATCTGACCACCTCTTGTGTAGAAACTTCTGAGAAGGAATTTAATTCTCGCAAACGTAAACGGGAATCGTTACTGGAATGGTTGATGACTGATTACAAAGTGGAGATGATGAATGATGGCATGCAAGACTTCTTTGTTCAATTTCATAAACCTAAACACAGTCCTTATCAAGAAGGTGTATGGAAGATAAGAGTGGAGCTACCCGATGCTTATCCTTATAAGTCTCCTTCTATTGGTTTTGTCAACTACATTTACCATCTTAGTGTTGATGCAATTCTAGAAGTAGAGAGTCAAAAGTCCATGGCAAATGGGTCTTTCCTTGATTGCCTCAAAGCTGAAACTTTTTCTGAGTTTCATGGAAACAGTGGTTGTCTTGTTGAGGATCGTTTTGATAGTGCTGATCATGTCAAAGATAAACAAAAATCTTTGTTTTCTCAAATTTTTGGGGTTTACCTAAAGGAGAATTGTCGTAAGGGCAATGTGAGGCCTGTGCCAGTGATGCTTGGTGATGGTCAATTGCTTGATTTATATCAATTATTCTCCCTTGTGAAGGAAAAAGGTGGGTATGATGCGATATCGAGAAAAGGGTTGTGGGATTCCGTGATAGATGAACTGGGTTTGGACCTTCGTATTTTGGCTTCGGTGAAATTAGTATATGAAAAATATCTGAGTGATTTCGAAGGTTGGCTTAGAAAAACATTTGAAGAGAAGAGTTGCAAAAATGGGAGTCATGGGTATTTGAATTCATTTCTGATAGATCTAGAAGAAGAGTTTCAAAGCCTTTTATGCTCAAATCTAAAGGACAAAGATGATGATTTTGTCCCGTTAGAATCCAATAACATCATAAAGCACATTGATTTTGTTAACCACAAGAGTGATGGTTATTTATTGGACCCTAATTACCAAAATAACAAATGCAAAGCTGTCCACAATGTTAACAGTGATGGTAATGCGGATGATGATGAAAAATTCGGTACTGGTGTTAAGAATGATCTAACCACCTCTTGTGCGGGAACTTCTGAGAAGGAATTCTATTCTCGCAAGCGTAAACGGGAATCGTTATCAGGAATGGTAAACTGGACAAGGAATATCGCAAAACATCTGTTTGATCCTCTAGCTCAACCATTACCAGAAATATCAAAGTGGAAGGACTATAAAGGAAGCCAGGACTTCTTTTTTCAGATGCTGAGGGCAAGAGACGTTCTGTCGGTCAGAAAGCATGCAGAACCAAACAGTGGATCATCATCCAAGAAGGTGAAGATGCATCCTGCCATGTATGAGGATCCTGTTTCTCTTGGTCACCAAGGTACGGTGAATTTGAGACGTAGTGAAAGGCTTCCTATCTGTGTTAAATTGCATGGTCCAGTCAAGATGAAATCAGAAAAGTGTCCTCTGGAGAAAACAACTGGCAAACCAGATGTCGTGATCAAAAAGAAAAAATCTGAGCCATCTATGGATGATTTTCGTGAAAAGGTTGTTTCTGTAGGCAACTTTTTTCAAGCGGAAGTTCCGGAATGGACTGGTGTAGTTTCTGAGAGTGACTCTAAATGGTTAGGCACACAGGTGTGGCCTGTTAAAGATGATTCAAATTTTACGACCGAAACAGATCTTGTTGGGAGAGGAAGACGAGGAAAGTGTAACTGCAACGTTCAAGGTTCTGTTGACTGTGTCAGATTCCATATTGCTGATAACAGGATGAAGCTGAAGGTTGAATTGCGTTCTGTGTTTTATCATTGGGGATTTGATAAAATGGGCGAGGAAGTTTCACTTCGATGGACAGCTGATGAAGAAAAGAGATTTAAGGATGCAATGGGTTTAAAAATCCCCTCTCAAAACAAGTCTTATTGGAACAATCCATCCAGATGCTTTCGAAGGAAGGCAAGAAAAGACTTGGTGAGGTATTACTTCAATGTATATCTTATTCAACTAAGAAGCTATCAGAATCGAGTGACTCCGAATGCTGTTGACAGTGATGATGACGAAGTGGAATTTGGATCTTTTGATGATGGTTTCGGAAGGAAAGCTATCAGGCATCCATCTATGGAATTCATGGAGTGTACAGAGAACAAGCAATGCTTTGATTTTGAGTAG

Protein sequence

>MsG0480023660.01.T01

MVNGRRCTRHDNERLPTTFRRTESHRNEMDPEAVQVWDYMVEGKLIRIIWMMIDYKVEMINDGMQQFFLEFHCPKHSPYQEGVWKIRVELPDVYPYKSPSMGSVNKVYHPNVDEIFNSRKRKRESLSGTKVKMHPAMYNNPVPLGHQGRVTLRRSERRPISVKPDVFIQKKKSTAKADVTKKKKSEPSWDDSREKLVHVGRLFQAEVPQWTGVVYEKTDLVGRGRRGKCSCNAQGSVDCVRLHIAANRTKLKLELGSAFYHWGFDKMGEEVSLRWTADEEKRFKDAMRLKIPSQNKSFWNNPSIYFFQRKTRKDMVSYCFNVYLIQLRSYQNRVTPKTVDCNNEEVEFGSFGYGFGMKAIKHPSMEFMECSENTQCFDFEETRQLMTDYKVEMINDCMQEFFVEFHVPKHIILWTLKTKISNATVQNANGNGNDNDDEIFCTGVKDDLTTSCVETSEKEFNSRKRKRESLLEWLMTDYKVEMMNDGMQDFFVQFHKPKHSPYQEGVWKIRVELPDAYPYKSPSIGFVNYIYHLSVDAILEVESQKSMANGSFLDCLKAETFSEFHGNSGCLVEDRFDSADHVKDKQKSLFSQIFGVYLKENCRKGNVRPVPVMLGDGQLLDLYQLFSLVKEKGGYDAISRKGLWDSVIDELGLDLRILASVKLVYEKYLSDFEGWLRKTFEEKSCKNGSHGYLNSFLIDLEEEFQSLLCSNLKDKDDDFVPLESNNIIKHIDFVNHKSDGYLLDPNYQNNKCKAVHNVNSDGNADDDEKFGTGVKNDLTTSCAGTSEKEFYSRKRKRESLSGMVNWTRNIAKHLFDPLAQPLPEISKWKDYKGSQDFFFQMLRARDVLSVRKHAEPNSGSSSKKVKMHPAMYEDPVSLGHQGTVNLRRSERLPICVKLHGPVKMKSEKCPLEKTTGKPDVVIKKKKSEPSMDDFREKVVSVGNFFQAEVPEWTGVVSESDSKWLGTQVWPVKDDSNFTTETDLVGRGRRGKCNCNVQGSVDCVRFHIADNRMKLKVELRSVFYHWGFDKMGEEVSLRWTADEEKRFKDAMGLKIPSQNKSYWNNPSRCFRRKARKDLVRYYFNVYLIQLRSYQNRVTPNAVDSDDDEVEFGSFDDGFGRKAIRHPSMEFMECTENKQCFDFE*