AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780035957.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780035957.01.T01 MTR_7g006030 97.170 212 6 0 23 234 376 587 7.77e-151 435
MsG0780035957.01.T01 MTR_1g116210 84.434 212 33 0 23 234 453 664 1.92e-132 390
MsG0780035957.01.T01 MTR_1g007150 80.184 217 43 0 18 234 456 672 1.22e-124 371
MsG0780035957.01.T01 MTR_7g085540 80.184 217 43 0 18 234 480 696 1.38e-123 369
MsG0780035957.01.T01 MTR_3g110240 77.419 217 49 0 18 234 453 669 2.46e-120 360
MsG0780035957.01.T01 MTR_8g014050 71.889 217 61 0 18 234 463 679 3.25e-103 316
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780035957.01.T01 AT3G13670 84.305 223 34 1 23 244 480 702 1.22e-133 394
MsG0780035957.01.T01 AT2G25760 76.147 218 52 0 17 234 444 661 4.61e-122 364
MsG0780035957.01.T01 AT2G25760 76.147 218 52 0 17 234 447 664 5.56e-122 363
MsG0780035957.01.T01 AT3G03940 78.341 217 47 0 18 234 473 689 3.59e-121 362
MsG0780035957.01.T01 AT5G18190 73.799 229 55 1 18 246 463 686 7.01e-119 356
MsG0780035957.01.T01 AT5G18190 73.799 229 55 1 18 246 463 686 7.01e-119 356
MsG0780035957.01.T01 AT3G03930 68.545 213 67 0 23 235 65 277 1.17e-107 314

Find 77 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCTCTGGGCACTTATTA+TGG 0.176547 7:+532052 MsG0780035957.01.T01:CDS
TTGATTCTGTTTATGTTTAC+AGG 0.182561 7:+534246 MsG0780035957.01.T01:CDS
TGGCTTCTTGTTCCAATCTC+TGG 0.237696 7:+532039 MsG0780035957.01.T01:CDS
CAAGCACACATGTTAAGGTT+AGG 0.330124 7:+534168 MsG0780035957.01.T01:CDS
AACCATTATCCCATCGTCTA+TGG 0.333296 7:-534034 None:intergenic
TCTATAGCTGGGGTTACTAA+TGG 0.339143 7:+532271 MsG0780035957.01.T01:CDS
CTTATTATGGATGCTGGAAC+TGG 0.352603 7:+532065 MsG0780035957.01.T01:CDS
GGCTTCTTGTTCCAATCTCT+GGG 0.354817 7:+532040 MsG0780035957.01.T01:CDS
TACCTTGCTTGCTTGTGCTA+TGG 0.369695 7:+534289 MsG0780035957.01.T01:CDS
CATAATAAGTGCCCAGAGAT+TGG 0.371273 7:-532051 None:intergenic
GACGATGGGATAATGGTTAC+AGG 0.373311 7:+534039 MsG0780035957.01.T01:CDS
ATTTCCAAGCACACATGTTA+AGG 0.378927 7:+534163 MsG0780035957.01.T01:CDS
GGCCACTGCTGGAAGTCGTT+GGG 0.383031 7:+533113 MsG0780035957.01.T01:CDS
ACCTTGCTTGCTTGTGCTAT+GGG 0.388384 7:+534290 MsG0780035957.01.T01:CDS
CTTCTTGTTTATCCATTTGA+AGG 0.400317 7:-533061 None:intergenic
TATTACATTACTTCTATAGC+TGG 0.401862 7:+532259 MsG0780035957.01.T01:CDS
ATCCATAGACGATGGGATAA+TGG 0.409318 7:+534032 MsG0780035957.01.T01:CDS
TGAAAAGTGGCTGTACTGTT+AGG 0.434490 7:+531937 MsG0780035957.01.T01:intron
CTATAGCTGGGGTTACTAAT+GGG 0.437207 7:+532272 MsG0780035957.01.T01:CDS
AAGCACACATGTTAAGGTTA+GGG 0.438167 7:+534169 MsG0780035957.01.T01:CDS
GCGAGTCTTTCCCCTTCAAA+TGG 0.445977 7:+533049 MsG0780035957.01.T01:CDS
TCTCTTGTGGTGATGTCAAA+AGG 0.451724 7:+532298 MsG0780035957.01.T01:CDS
GTTTCCTGAGTTTCGTCAGC+AGG 0.453762 7:-534125 None:intergenic
CGCTATTTGACAACACTGAA+AGG 0.469020 7:-534331 None:intergenic
GAATCTATGTTACATAAGTA+CGG 0.472499 7:+531199 None:intergenic
GTGACTTCAATGGCCACTGC+TGG 0.476110 7:+533102 MsG0780035957.01.T01:CDS
ATTACATTACTTCTATAGCT+GGG 0.477779 7:+532260 MsG0780035957.01.T01:CDS
GGAATGGATCATGGAGCAAT+GGG 0.480666 7:+532228 MsG0780035957.01.T01:intron
GTTGTTATGTCACGGAATGC+TGG 0.481715 7:+533138 MsG0780035957.01.T01:CDS
CGTCTATGGATTCCCTCACT+AGG 0.494306 7:-534020 None:intergenic
TCGTCAGCAGGTCTTCGCCT+TGG 0.501723 7:-534113 None:intergenic
ATAAGTACGGGTACGGTACC+CGG 0.505766 7:+531212 MsG0780035957.01.T01:CDS
TGGCCACTGCTGGAAGTCGT+TGG 0.506701 7:+533112 MsG0780035957.01.T01:CDS
GAATGCTGGATTCAGTGATC+AGG 0.508380 7:+533152 MsG0780035957.01.T01:CDS
TTCTTGTTTATCCATTTGAA+GGG 0.516197 7:-533060 None:intergenic
ACAATACGGGTACCGACTAC+CGG 0.518703 7:+531236 MsG0780035957.01.T01:CDS
TGGGCACTTATTATGGATGC+TGG 0.523125 7:+532059 MsG0780035957.01.T01:CDS
TCACAGCAACTGCAGCTACA+TGG 0.524987 7:+534063 MsG0780035957.01.T01:CDS
CTAACCTTAACATGTGTGCT+TGG 0.525324 7:-534167 None:intergenic
AGCACAAGCAAGCAAGGTAA+AGG 0.526556 7:-534285 None:intergenic
TCAAATGGATAAACAAGAAG+TGG 0.528244 7:+533064 MsG0780035957.01.T01:CDS
AGTCGGTACCCGTATTGTAC+CGG 0.529579 7:-531231 None:intergenic
ACGAAACTCAGGAAACTCTT+CGG 0.529891 7:+534132 MsG0780035957.01.T01:CDS
TTCTTTATAGGAATGGATCA+TGG 0.534028 7:+532219 MsG0780035957.01.T01:intron
CGGCCTTCTTATTAGTTGTG+TGG 0.534547 7:+532019 MsG0780035957.01.T01:CDS
AGGAATGGATCATGGAGCAA+TGG 0.542705 7:+532227 MsG0780035957.01.T01:intron
TACGGTACCCGGTACAATAC+GGG 0.543157 7:+531223 MsG0780035957.01.T01:CDS
TACTAATGGGAGCTCTCTTG+TGG 0.544290 7:+532285 MsG0780035957.01.T01:CDS
AAGCCACACAACTAATAAGA+AGG 0.555747 7:-532022 None:intergenic
AAGACCTGCTGACGAAACTC+AGG 0.556055 7:+534121 MsG0780035957.01.T01:CDS
GTACGGTACCCGGTACAATA+CGG 0.557150 7:+531222 MsG0780035957.01.T01:CDS
CTTTCAGTGTTGTCAAATAG+CGG 0.557757 7:+534332 MsG0780035957.01.T01:CDS
CACAGCAACTGCAGCTACAT+GGG 0.559415 7:+534064 MsG0780035957.01.T01:CDS
CATATTCTCGTACCGGTAGT+CGG 0.568558 7:-531248 None:intergenic
AATCTATGTTACATAAGTAC+GGG 0.570069 7:+531200 None:intergenic
GGATTCCCTCACTAGGGTAG+AGG 0.571629 7:-534013 None:intergenic
GCTATTTGACAACACTGAAA+GGG 0.573079 7:-534330 None:intergenic
ATAAACAAGAAGTGGAGAGA+AGG 0.576509 7:+533072 MsG0780035957.01.T01:CDS
GTTGGGGTGTTGTTATGTCA+CGG 0.581602 7:+533130 MsG0780035957.01.T01:CDS
GCCCATAGCACAAGCAAGCA+AGG 0.584968 7:-534291 None:intergenic
TATCATTACAATGTAGCGGA+TGG 0.588065 7:+531960 MsG0780035957.01.T01:CDS
TGATTTCCTCTACCCTAGTG+AGG 0.596385 7:+534007 MsG0780035957.01.T01:CDS
GATTTCCTCTACCCTAGTGA+GGG 0.598868 7:+534008 MsG0780035957.01.T01:CDS
GTCGGTACCCGTATTGTACC+GGG 0.602247 7:-531230 None:intergenic
ATGTTACATAAGTACGGGTA+CGG 0.602806 7:+531205 MsG0780035957.01.T01:CDS
GTCTATGGATTCCCTCACTA+GGG 0.605702 7:-534019 None:intergenic
TGAGGGAATCCATAGACGAT+GGG 0.610527 7:+534025 MsG0780035957.01.T01:CDS
TCTTGTTTATCCATTTGAAG+GGG 0.615159 7:-533059 None:intergenic
GTGAGGGAATCCATAGACGA+TGG 0.620456 7:+534024 MsG0780035957.01.T01:CDS
ACCCCAACGACTTCCAGCAG+TGG 0.622356 7:-533115 None:intergenic
TTACATTACTTCTATAGCTG+GGG 0.629898 7:+532261 MsG0780035957.01.T01:CDS
GTAGAGCGAGGGATTGCAGA+CGG 0.643300 7:+531999 MsG0780035957.01.T01:CDS
CTCTTATATTAAGCAAACCA+AGG 0.643646 7:+534096 MsG0780035957.01.T01:CDS
GCCACTGCTGGAAGTCGTTG+GGG 0.646395 7:+533114 MsG0780035957.01.T01:CDS
TTAGCGCAGCATGTAGAGCG+AGG 0.648996 7:+531987 MsG0780035957.01.T01:CDS
TAGCGCAGCATGTAGAGCGA+GGG 0.654538 7:+531988 MsG0780035957.01.T01:CDS
TAGGTATCATTACAATGTAG+CGG 0.659418 7:+531956 MsG0780035957.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAATAAATTAAACCA+AGG - Chr7:533825-533844 None:intergenic 10.0%
!!! TTTTTTAAAAAATTAAGGTA+CGG + Chr7:531275-531294 MsG0780035957.01.T01:intron 10.0%
!! AAAAATTTGAAAATTAGTGT+TGG + Chr7:531390-531409 MsG0780035957.01.T01:intron 15.0%
!!! AAAAAAAGAAAACCATTTTT+TGG - Chr7:532437-532456 None:intergenic 15.0%
!!! AAAAAAGAAAACCATTTTTT+GGG - Chr7:532436-532455 None:intergenic 15.0%
!!! ATAAGTTGCATATTTTAATT+TGG + Chr7:532736-532755 MsG0780035957.01.T01:intron 15.0%
!!! GGCAATTTTTTAAAAAATTA+AGG + Chr7:531270-531289 MsG0780035957.01.T01:intron 15.0%
!!! TAAATTTTATCAAACTTTGT+TGG - Chr7:533397-533416 None:intergenic 15.0%
!!! TAACAAAATTCATGATTTTA+TGG - Chr7:531307-531326 None:intergenic 15.0%
!!! TTTTTAAAAAATTAAGGTAC+GGG + Chr7:531276-531295 MsG0780035957.01.T01:intron 15.0%
!! AGTTTCAAAAAACTGAAAAT+AGG - Chr7:532182-532201 None:intergenic 20.0%
!! GATTTACTTGGTTAATATAT+GGG + Chr7:531726-531745 MsG0780035957.01.T01:intron 20.0%
!! TAATCTGTGATATGATATAA+TGG + Chr7:533196-533215 MsG0780035957.01.T01:intron 20.0%
!! TGATTTACTTGGTTAATATA+TGG + Chr7:531725-531744 MsG0780035957.01.T01:intron 20.0%
!! TTAAGTTAGTTAGGTAATTA+GGG + Chr7:532400-532419 MsG0780035957.01.T01:intron 20.0%
!! TTAGATTAGACTAACATTAT+AGG - Chr7:531652-531671 None:intergenic 20.0%
!!! GTACAAAACATTTTGAATAA+AGG - Chr7:533252-533271 None:intergenic 20.0%
!!! TTTAAGTTAGTTAGGTAATT+AGG + Chr7:532399-532418 MsG0780035957.01.T01:intron 20.0%
! AACAAGTCAATAACCATATT+GGG - Chr7:533567-533586 None:intergenic 25.0%
! AATTTGAAAGTCTATTCACA+TGG + Chr7:532762-532781 MsG0780035957.01.T01:intron 25.0%
! AGATAGTAAAACAGCATATA+AGG - Chr7:531627-531646 None:intergenic 25.0%
! ATTACATTACTTCTATAGCT+GGG + Chr7:532260-532279 MsG0780035957.01.T01:CDS 25.0%
! CTAGATAAGAGTTTAGAAAA+AGG - Chr7:533508-533527 None:intergenic 25.0%
! GTTTATGTTTACAGGAAAAA+TGG + Chr7:534254-534273 MsG0780035957.01.T01:CDS 25.0%
! TAAAAAATTGAAAGTCACAC+AGG - Chr7:532879-532898 None:intergenic 25.0%
! TATTAAGAAATTGCAACTGT+AGG + Chr7:533695-533714 MsG0780035957.01.T01:intron 25.0%
! TATTACATTACTTCTATAGC+TGG + Chr7:532259-532278 MsG0780035957.01.T01:CDS 25.0%
! TGAGTATTACTATTACTACA+TGG + Chr7:533285-533304 MsG0780035957.01.T01:intron 25.0%
! TTGATTCTGTTTATGTTTAC+AGG + Chr7:534246-534265 MsG0780035957.01.T01:CDS 25.0%
!! AAAACATTTTGAATAAAGGC+AGG - Chr7:533248-533267 None:intergenic 25.0%
!! TCAAAACAATTCTTGTTTGT+TGG + Chr7:533637-533656 MsG0780035957.01.T01:intron 25.0%
!! TTCTTGTTTATCCATTTGAA+GGG - Chr7:533063-533082 None:intergenic 25.0%
!!! AATTTTTTAGCAGATCTATC+TGG + Chr7:532890-532909 MsG0780035957.01.T01:intron 25.0%
!!! ATACATTGTTTTTGAATACC+CGG + Chr7:532628-532647 MsG0780035957.01.T01:intron 25.0%
!!! GTTTTGTTATGATGATGTTA+TGG + Chr7:531909-531928 MsG0780035957.01.T01:intron 25.0%
!!! TGAGAAAAATCACTTTTTGA+AGG - Chr7:534226-534245 None:intergenic 25.0%
AACAAACCAAGCTAGAAAAT+AGG - Chr7:533431-533450 None:intergenic 30.0%
AACTAATGAAGTGAAGGAAA+AGG - Chr7:533802-533821 None:intergenic 30.0%
AAGTCAGATAAACAAACACA+AGG - Chr7:531831-531850 None:intergenic 30.0%
AATTTCCCATTTAGTGTAGA+GGG - Chr7:532586-532605 None:intergenic 30.0%
ACAAGTCAATAACCATATTG+GGG - Chr7:533566-533585 None:intergenic 30.0%
ATAAAGAAGCAGAATTGGAT+GGG - Chr7:532207-532226 None:intergenic 30.0%
ATCAACATTGGATCCAATTT+CGG + Chr7:532371-532390 MsG0780035957.01.T01:intron 30.0%
ATCCAATGTTGATGCATTTA+CGG - Chr7:532364-532383 None:intergenic 30.0%
ATCCAATTCTGCTTCTTTAT+AGG + Chr7:532207-532226 MsG0780035957.01.T01:intron 30.0%
ATTCTGCTTCTTTATAGGAA+TGG + Chr7:532212-532231 MsG0780035957.01.T01:intron 30.0%
ATTTAACCATCTGATATGTC+TGG + Chr7:531767-531786 MsG0780035957.01.T01:intron 30.0%
CAACAAGTCAATAACCATAT+TGG - Chr7:533568-533587 None:intergenic 30.0%
CACCAGTTTGATATATTACT+CGG - Chr7:533325-533344 None:intergenic 30.0%
CCAATAAACAATAGTGCTAT+GGG - Chr7:533779-533798 None:intergenic 30.0%
CTCTGCTTTAATACTATAGA+GGG + Chr7:532946-532965 MsG0780035957.01.T01:intron 30.0%
CTCTTATATTAAGCAAACCA+AGG + Chr7:534096-534115 MsG0780035957.01.T01:CDS 30.0%
GATAAGAGTTTAGAAAAAGG+AGG - Chr7:533505-533524 None:intergenic 30.0%
GGACATCATTATGATAGATT+TGG - Chr7:531586-531605 None:intergenic 30.0%
TAACACATGTCGTATAGATA+TGG + Chr7:531669-531688 MsG0780035957.01.T01:intron 30.0%
TAATTTCCCATTTAGTGTAG+AGG - Chr7:532587-532606 None:intergenic 30.0%
TAGGTATCATTACAATGTAG+CGG + Chr7:531956-531975 MsG0780035957.01.T01:CDS 30.0%
TAGTAAAACAGCATATAAGG+TGG - Chr7:531624-531643 None:intergenic 30.0%
TATAAAGAAGCAGAATTGGA+TGG - Chr7:532208-532227 None:intergenic 30.0%
TCAAATGGATAAACAAGAAG+TGG + Chr7:533064-533083 MsG0780035957.01.T01:CDS 30.0%
TCAACCTTGTGTAAGAAAAA+AGG - Chr7:532119-532138 None:intergenic 30.0%
TCTCTGCTTTAATACTATAG+AGG + Chr7:532945-532964 MsG0780035957.01.T01:intron 30.0%
TGCACATGTCATATAGATAT+CGG + Chr7:531692-531711 MsG0780035957.01.T01:intron 30.0%
TGCTCAAATTTCAGAGATAT+GGG - Chr7:532518-532537 None:intergenic 30.0%
TGTGTTTGTTTATCTGACTT+GGG + Chr7:531831-531850 MsG0780035957.01.T01:intron 30.0%
TGTTATGGTTTACTGAAAAG+TGG + Chr7:531924-531943 MsG0780035957.01.T01:intron 30.0%
TTACATTACTTCTATAGCTG+GGG + Chr7:532261-532280 MsG0780035957.01.T01:CDS 30.0%
TTCCTATAAAGAAGCAGAAT+TGG - Chr7:532212-532231 None:intergenic 30.0%
TTCTTTATAGGAATGGATCA+TGG + Chr7:532219-532238 MsG0780035957.01.T01:intron 30.0%
TTGTGTTTGTTTATCTGACT+TGG + Chr7:531830-531849 MsG0780035957.01.T01:intron 30.0%
TTTAACCATCTGATATGTCT+GGG + Chr7:531768-531787 MsG0780035957.01.T01:intron 30.0%
TTTATCAAACTTTGTTGGCA+GGG - Chr7:533392-533411 None:intergenic 30.0%
! CTTCTTGTTTATCCATTTGA+AGG - Chr7:533064-533083 None:intergenic 30.0%
! TCTTGTTTATCCATTTGAAG+GGG - Chr7:533062-533081 None:intergenic 30.0%
! TTTTATCAAACTTTGTTGGC+AGG - Chr7:533393-533412 None:intergenic 30.0%
!! AACTTCATTGTGATTTGTTC+TGG + Chr7:532984-533003 MsG0780035957.01.T01:intron 30.0%
!! ATATCTCTGAAATTTGAGCA+GGG + Chr7:532518-532537 MsG0780035957.01.T01:intron 30.0%
!! CAATATGGTTATTGACTTGT+TGG + Chr7:533566-533585 MsG0780035957.01.T01:intron 30.0%
!! GATTGTTGATTCAATAAGCT+TGG + Chr7:532691-532710 MsG0780035957.01.T01:intron 30.0%
!! TAGCTTGGTTTGTTGAAATT+GGG + Chr7:533437-533456 MsG0780035957.01.T01:intron 30.0%
!! TGGCGTTTTGAATATACTAA+TGG - Chr7:532461-532480 None:intergenic 30.0%
AAACAGCATATAAGGTGGTT+CGG - Chr7:531619-531638 None:intergenic 35.0%
AAACCAAGCTAGAAAATAGG+TGG - Chr7:533428-533447 None:intergenic 35.0%
AAATTGCCATATTCTCGTAC+CGG - Chr7:531258-531277 None:intergenic 35.0%
AACAACCTACAGATAAAACG+TGG - Chr7:533982-534001 None:intergenic 35.0%
AACGCCAGTAAACTATGATA+AGG + Chr7:532474-532493 MsG0780035957.01.T01:intron 35.0%
AACTAGTGAAGTGAAGGAAA+AGG - Chr7:533663-533682 None:intergenic 35.0%
AAGCACACATGTTAAGGTTA+GGG + Chr7:534169-534188 MsG0780035957.01.T01:CDS 35.0%
AAGCATGAGTGCTTGTAAAA+AGG - Chr7:531556-531575 None:intergenic 35.0%
AAGCCACACAACTAATAAGA+AGG - Chr7:532025-532044 None:intergenic 35.0%
ACCAGAATGAGTTCAATAAG+AGG - Chr7:533612-533631 None:intergenic 35.0%
ACCATGAAATTAGCAACAAG+AGG - Chr7:532561-532580 None:intergenic 35.0%
ACCTCTTGTTGCTAATTTCA+TGG + Chr7:532557-532576 MsG0780035957.01.T01:intron 35.0%
ACGCCAGTAAACTATGATAA+GGG + Chr7:532475-532494 MsG0780035957.01.T01:intron 35.0%
AGTAAAACGTATCTACTGCT+TGG + Chr7:531884-531903 MsG0780035957.01.T01:intron 35.0%
ATAAACAAGAAGTGGAGAGA+AGG + Chr7:533072-533091 MsG0780035957.01.T01:CDS 35.0%
ATGCCCTTATCATAGTTTAC+TGG - Chr7:532481-532500 None:intergenic 35.0%
ATGTTACATAAGTACGGGTA+CGG + Chr7:531205-531224 MsG0780035957.01.T01:CDS 35.0%
ATGTTGTACATCATTGCATG+TGG + Chr7:532144-532163 MsG0780035957.01.T01:intron 35.0%
ATTACTATTACTACATGGCC+TGG + Chr7:533290-533309 MsG0780035957.01.T01:intron 35.0%
ATTACTGATCCAATCCAAAG+AGG - Chr7:533358-533377 None:intergenic 35.0%
ATTTCCAAGCACACATGTTA+AGG + Chr7:534163-534182 MsG0780035957.01.T01:CDS 35.0%
ATTTCCCATTTAGTGTAGAG+GGG - Chr7:532585-532604 None:intergenic 35.0%
CAAGTCAATAACCATATTGG+GGG - Chr7:533565-533584 None:intergenic 35.0%
CCCATAGCACTATTGTTTAT+TGG + Chr7:533776-533795 MsG0780035957.01.T01:intron 35.0%
CCTTACAAAATCAGCTTGTA+AGG + Chr7:533470-533489 MsG0780035957.01.T01:intron 35.0%
CTCCGAGTAATATATCAAAC+TGG + Chr7:533320-533339 MsG0780035957.01.T01:intron 35.0%
CTGCTCAAATTTCAGAGATA+TGG - Chr7:532519-532538 None:intergenic 35.0%
CTTTCAGTGTTGTCAAATAG+CGG + Chr7:534332-534351 MsG0780035957.01.T01:CDS 35.0%
GCCAATAAACAATAGTGCTA+TGG - Chr7:533780-533799 None:intergenic 35.0%
GCTATTTGACAACACTGAAA+GGG - Chr7:534333-534352 None:intergenic 35.0%
GGATTGGATCAGTAATTTAG+TGG + Chr7:533362-533381 MsG0780035957.01.T01:intron 35.0%
GTAAAACGTATCTACTGCTT+GGG + Chr7:531885-531904 MsG0780035957.01.T01:intron 35.0%
TCAACATTGGATCCAATTTC+GGG + Chr7:532372-532391 MsG0780035957.01.T01:intron 35.0%
TCCAATTTCCTGTACAAGTA+TGG + Chr7:532827-532846 MsG0780035957.01.T01:intron 35.0%
TCCTCTTATTGAACTCATTC+TGG + Chr7:533608-533627 MsG0780035957.01.T01:intron 35.0%
TCTGTAGGATCCACATAAAT+GGG + Chr7:532654-532673 MsG0780035957.01.T01:intron 35.0%
TTGTTTGTTCACTTGCATGA+GGG + Chr7:532916-532935 MsG0780035957.01.T01:intron 35.0%
! ACTTGTTGGATAGATCATAG+GGG + Chr7:533580-533599 MsG0780035957.01.T01:intron 35.0%
! ATCATCCACGTTTTATCTGT+AGG + Chr7:533974-533993 MsG0780035957.01.T01:intron 35.0%
! CTGATTTTGTAAGGATGAGT+TGG - Chr7:533464-533483 None:intergenic 35.0%
! TATCATTACAATGTAGCGGA+TGG + Chr7:531960-531979 MsG0780035957.01.T01:CDS 35.0%
! TTGGGTTGTTAAGCATTGTA+AGG + Chr7:533726-533745 MsG0780035957.01.T01:intron 35.0%
!! CATATCTCTGAAATTTGAGC+AGG + Chr7:532517-532536 MsG0780035957.01.T01:intron 35.0%
!! CCTTACAAGCTGATTTTGTA+AGG - Chr7:533473-533492 None:intergenic 35.0%
!! CTAGCTTGGTTTGTTGAAAT+TGG + Chr7:533436-533455 MsG0780035957.01.T01:intron 35.0%
!! GACTTGTTGGATAGATCATA+GGG + Chr7:533579-533598 MsG0780035957.01.T01:intron 35.0%
!! GCTAGAAAATAGGTGGATTT+TGG - Chr7:533421-533440 None:intergenic 35.0%
!! TATCTCTGAAATTTGAGCAG+GGG + Chr7:532519-532538 MsG0780035957.01.T01:intron 35.0%
!! TGACTTGTTGGATAGATCAT+AGG + Chr7:533578-533597 MsG0780035957.01.T01:intron 35.0%
!!! AATCCACCTATTTTCTAGCT+TGG + Chr7:533422-533441 MsG0780035957.01.T01:intron 35.0%
!!! GTCACCTTTTTTCTTACACA+AGG + Chr7:532112-532131 MsG0780035957.01.T01:CDS 35.0%
AACATTGGATCCAATTTCGG+GGG + Chr7:532374-532393 MsG0780035957.01.T01:intron 40.0%
AACCATTATCCCATCGTCTA+TGG - Chr7:534037-534056 None:intergenic 40.0%
AACTTAAAGACCCCCGAAAT+TGG - Chr7:532387-532406 None:intergenic 40.0%
ACCTTGAACTAGTGAAGTGA+AGG - Chr7:533669-533688 None:intergenic 40.0%
ACGAAACTCAGGAAACTCTT+CGG + Chr7:534132-534151 MsG0780035957.01.T01:CDS 40.0%
AGAGTCCTATCTTTCCAACA+CGG + Chr7:533526-533545 MsG0780035957.01.T01:intron 40.0%
AGTGCTATGGGACAGTATTA+TGG - Chr7:533767-533786 None:intergenic 40.0%
ATCCACATAAATGGGAGTGA+GGG + Chr7:532662-532681 MsG0780035957.01.T01:intron 40.0%
ATCCATAGACGATGGGATAA+TGG + Chr7:534032-534051 MsG0780035957.01.T01:CDS 40.0%
CAAAATCAGCTTGTAAGGTG+AGG + Chr7:533475-533494 MsG0780035957.01.T01:intron 40.0%
CAACATTGGATCCAATTTCG+GGG + Chr7:532373-532392 MsG0780035957.01.T01:intron 40.0%
CAAGCACACATGTTAAGGTT+AGG + Chr7:534168-534187 MsG0780035957.01.T01:CDS 40.0%
CAATCTCTGGGCACTTATTA+TGG + Chr7:532052-532071 MsG0780035957.01.T01:CDS 40.0%
CATAATAAGTGCCCAGAGAT+TGG - Chr7:532054-532073 None:intergenic 40.0%
CCAAGGAACTAATGAAGTGA+AGG - Chr7:533808-533827 None:intergenic 40.0%
CCTTCACTTCATTAGTTCCT+TGG + Chr7:533805-533824 MsG0780035957.01.T01:intron 40.0%
CGCTATTTGACAACACTGAA+AGG - Chr7:534334-534353 None:intergenic 40.0%
CTAACCTTAACATGTGTGCT+TGG - Chr7:534170-534189 None:intergenic 40.0%
CTATAGCTGGGGTTACTAAT+GGG + Chr7:532272-532291 MsG0780035957.01.T01:CDS 40.0%
CTCCGTAAATGCATCAACAT+TGG + Chr7:532359-532378 MsG0780035957.01.T01:intron 40.0%
CTTATTATGGATGCTGGAAC+TGG + Chr7:532065-532084 MsG0780035957.01.T01:CDS 40.0%
CTTGTACAGGAAATTGGAAC+AGG - Chr7:532825-532844 None:intergenic 40.0%
GCCATACTTGTACAGGAAAT+TGG - Chr7:532831-532850 None:intergenic 40.0%
GTCTCTGTGTTCCCAAAAAA+TGG + Chr7:532422-532441 MsG0780035957.01.T01:intron 40.0%
GTCTGTAGGATCCACATAAA+TGG + Chr7:532653-532672 MsG0780035957.01.T01:intron 40.0%
GTGCTATGGGACAGTATTAT+GGG - Chr7:533766-533785 None:intergenic 40.0%
GTTGTTTGTTCACTTGCATG+AGG + Chr7:532915-532934 MsG0780035957.01.T01:intron 40.0%
TCCTTCACTTCACTAGTTCA+AGG + Chr7:533665-533684 MsG0780035957.01.T01:intron 40.0%
TCTATAGCTGGGGTTACTAA+TGG + Chr7:532271-532290 MsG0780035957.01.T01:CDS 40.0%
TGAAAAGTGGCTGTACTGTT+AGG + Chr7:531937-531956 MsG0780035957.01.T01:intron 40.0%
! AGGTTTTCACGTGACTTCAA+TGG + Chr7:533092-533111 MsG0780035957.01.T01:CDS 40.0%
! GTGTCTTGCTGTGATTTACT+TGG + Chr7:531714-531733 MsG0780035957.01.T01:intron 40.0%
! TCTCTTGTGGTGATGTCAAA+AGG + Chr7:532298-532317 MsG0780035957.01.T01:CDS 40.0%
!! CAACTGTAGGAAGCACTATT+GGG + Chr7:533708-533727 MsG0780035957.01.T01:intron 40.0%
!! TGATTTGTTCTGGTTTCCAC+AGG + Chr7:532994-533013 MsG0780035957.01.T01:intron 40.0%
!!! CTTGGTTTTTTCCCCCAATA+TGG + Chr7:533551-533570 MsG0780035957.01.T01:intron 40.0%
AACCGAACTTTGTGCAGAGA+AGG - Chr7:533909-533928 None:intergenic 45.0%
AACTTTGTGCAGAGAAGGCA+AGG - Chr7:533904-533923 None:intergenic 45.0%
AAGTCCCGTGTTGGAAAGAT+AGG - Chr7:533534-533553 None:intergenic 45.0%
ACCTTGCTTGCTTGTGCTAT+GGG + Chr7:534290-534309 MsG0780035957.01.T01:CDS 45.0%
ACGTGGATGATGAGAAAGCA+AGG - Chr7:533965-533984 None:intergenic 45.0%
AGCACAAGCAAGCAAGGTAA+AGG - Chr7:534288-534307 None:intergenic 45.0%
AGGAATGGATCATGGAGCAA+TGG + Chr7:532227-532246 MsG0780035957.01.T01:intron 45.0%
ATTACTACATGGCCTGGCTT+TGG + Chr7:533296-533315 MsG0780035957.01.T01:intron 45.0%
CCTCTTTGCCATACTTGTAC+AGG - Chr7:532838-532857 None:intergenic 45.0%
CCTGTACAAGTATGGCAAAG+AGG + Chr7:532835-532854 MsG0780035957.01.T01:intron 45.0%
CGGCCTTCTTATTAGTTGTG+TGG + Chr7:532019-532038 MsG0780035957.01.T01:CDS 45.0%
GAAAAAACCAAGTCCCGTGT+TGG - Chr7:533543-533562 None:intergenic 45.0%
GAATGCTGGATTCAGTGATC+AGG + Chr7:533152-533171 MsG0780035957.01.T01:CDS 45.0%
GAGTCCTATCTTTCCAACAC+GGG + Chr7:533527-533546 MsG0780035957.01.T01:intron 45.0%
GATCCACATAAATGGGAGTG+AGG + Chr7:532661-532680 MsG0780035957.01.T01:intron 45.0%
GATTTCCTCTACCCTAGTGA+GGG + Chr7:534008-534027 MsG0780035957.01.T01:CDS 45.0%
GCTTGCAATCCTCTTTGGAT+TGG + Chr7:533346-533365 MsG0780035957.01.T01:intron 45.0%
GGAATGGATCATGGAGCAAT+GGG + Chr7:532228-532247 MsG0780035957.01.T01:intron 45.0%
GGCTTCTTGTTCCAATCTCT+GGG + Chr7:532040-532059 MsG0780035957.01.T01:CDS 45.0%
GGTTCCCCTCTACACTAAAT+GGG + Chr7:532578-532597 MsG0780035957.01.T01:intron 45.0%
GTACAGGAAATTGGAACAGG+CGG - Chr7:532822-532841 None:intergenic 45.0%
GTCTATGGATTCCCTCACTA+GGG - Chr7:534022-534041 None:intergenic 45.0%
GTTGGATAGATCATAGGGGT+TGG + Chr7:533584-533603 MsG0780035957.01.T01:intron 45.0%
GTTGTTATGTCACGGAATGC+TGG + Chr7:533138-533157 MsG0780035957.01.T01:CDS 45.0%
TACAGGAAATTGGAACAGGC+GGG - Chr7:532821-532840 None:intergenic 45.0%
TACCTTGCTTGCTTGTGCTA+TGG + Chr7:534289-534308 MsG0780035957.01.T01:CDS 45.0%
TACTAATGGGAGCTCTCTTG+TGG + Chr7:532285-532304 MsG0780035957.01.T01:CDS 45.0%
TATCTTTCCAACACGGGACT+TGG + Chr7:533533-533552 MsG0780035957.01.T01:intron 45.0%
TGAGGGAATCCATAGACGAT+GGG + Chr7:534025-534044 MsG0780035957.01.T01:CDS 45.0%
TGATTTCCTCTACCCTAGTG+AGG + Chr7:534007-534026 MsG0780035957.01.T01:CDS 45.0%
TGCCTTCTCTGCACAAAGTT+CGG + Chr7:533904-533923 MsG0780035957.01.T01:intron 45.0%
TGGCTTCTTGTTCCAATCTC+TGG + Chr7:532039-532058 MsG0780035957.01.T01:CDS 45.0%
TGGGCACTTATTATGGATGC+TGG + Chr7:532059-532078 MsG0780035957.01.T01:CDS 45.0%
TGGTTCCCCTCTACACTAAA+TGG + Chr7:532577-532596 MsG0780035957.01.T01:intron 45.0%
TTGTGTATACTGTGTGCCTG+TGG - Chr7:533013-533032 None:intergenic 45.0%
! AAAAGGTGAAGTACCCGTAC+CGG - Chr7:531539-531558 None:intergenic 45.0%
! CATATTCTCGTACCGGTAGT+CGG - Chr7:531251-531270 None:intergenic 45.0%
! CGGGGGTCTTTAAGTTAGTT+AGG + Chr7:532391-532410 MsG0780035957.01.T01:intron 45.0%
! GACGATGGGATAATGGTTAC+AGG + Chr7:534039-534058 MsG0780035957.01.T01:CDS 45.0%
! TCTGAAATTTGAGCAGGGGT+GGG + Chr7:532523-532542 MsG0780035957.01.T01:intron 45.0%
!! GCAACTGTAGGAAGCACTAT+TGG + Chr7:533707-533726 MsG0780035957.01.T01:intron 45.0%
!! GTTGGGGTGTTGTTATGTCA+CGG + Chr7:533130-533149 MsG0780035957.01.T01:CDS 45.0%
AAGACCTGCTGACGAAACTC+AGG + Chr7:534121-534140 MsG0780035957.01.T01:CDS 50.0%
AGTCGGTACCCGTATTGTAC+CGG - Chr7:531234-531253 None:intergenic 50.0%
ATAAGTACGGGTACGGTACC+CGG + Chr7:531212-531231 MsG0780035957.01.T01:CDS 50.0%
ATGTGGATCCTACAGACAGC+CGG - Chr7:532650-532669 None:intergenic 50.0%
ATTACTCGGAGACCAAAGCC+AGG - Chr7:533311-533330 None:intergenic 50.0%
CACAGCAACTGCAGCTACAT+GGG + Chr7:534064-534083 MsG0780035957.01.T01:CDS 50.0%
CACCCTCACTCCCATTTATG+TGG - Chr7:532667-532686 None:intergenic 50.0%
CGACTACCGGTACGAGAATA+TGG + Chr7:531249-531268 MsG0780035957.01.T01:intron 50.0%
CGTCTATGGATTCCCTCACT+AGG - Chr7:534023-534042 None:intergenic 50.0%
CTGAAATTTGAGCAGGGGTG+GGG + Chr7:532524-532543 MsG0780035957.01.T01:intron 50.0%
GCACTCCCAGACATATCAGA+TGG - Chr7:531776-531795 None:intergenic 50.0%
GCGAGTCTTTCCCCTTCAAA+TGG + Chr7:533049-533068 MsG0780035957.01.T01:CDS 50.0%
GGTGTGCTTGCAATCCTCTT+TGG + Chr7:533341-533360 MsG0780035957.01.T01:intron 50.0%
GTACGGTACCCGGTACAATA+CGG + Chr7:531222-531241 MsG0780035957.01.T01:CDS 50.0%
GTGAGGGAATCCATAGACGA+TGG + Chr7:534024-534043 MsG0780035957.01.T01:CDS 50.0%
GTTTCCTGAGTTTCGTCAGC+AGG - Chr7:534128-534147 None:intergenic 50.0%
TACCGTATGTGTACCCGGTA+CGG + Chr7:531522-531541 MsG0780035957.01.T01:intron 50.0%
TACGGTACCCGGTACAATAC+GGG + Chr7:531223-531242 MsG0780035957.01.T01:CDS 50.0%
TCACAGCAACTGCAGCTACA+TGG + Chr7:534063-534082 MsG0780035957.01.T01:CDS 50.0%
TTGAATACCCGGCTGTCTGT+AGG + Chr7:532639-532658 MsG0780035957.01.T01:intron 50.0%
! AAAGGTGAAGTACCCGTACC+GGG - Chr7:531538-531557 None:intergenic 50.0%
! ACGAGTACCGTATGTGTACC+CGG + Chr7:531517-531536 MsG0780035957.01.T01:intron 50.0%
!! ACAATACGGGTACCGACTAC+CGG + Chr7:531236-531255 MsG0780035957.01.T01:CDS 50.0%
!! CTCTGAAATTTGAGCAGGGG+TGG + Chr7:532522-532541 MsG0780035957.01.T01:intron 50.0%
ACCCGTACCGGGTACACATA+CGG - Chr7:531527-531546 None:intergenic 55.0%
ACCGTATGTGTACCCGGTAC+GGG + Chr7:531523-531542 MsG0780035957.01.T01:intron 55.0%
GCCCATAGCACAAGCAAGCA+AGG - Chr7:534294-534313 None:intergenic 55.0%
GGATTCCCTCACTAGGGTAG+AGG - Chr7:534016-534035 None:intergenic 55.0%
GGGTACACATACGGTACTCG+TGG - Chr7:531518-531537 None:intergenic 55.0%
GTAGAGCGAGGGATTGCAGA+CGG + Chr7:531999-532018 MsG0780035957.01.T01:CDS 55.0%
GTCGGTACCCGTATTGTACC+GGG - Chr7:531233-531252 None:intergenic 55.0%
GTGACTTCAATGGCCACTGC+TGG + Chr7:533102-533121 MsG0780035957.01.T01:CDS 55.0%
TAGCGCAGCATGTAGAGCGA+GGG + Chr7:531988-532007 MsG0780035957.01.T01:CDS 55.0%
TGTGGATCCTACAGACAGCC+GGG - Chr7:532649-532668 None:intergenic 55.0%
TTAGCGCAGCATGTAGAGCG+AGG + Chr7:531987-532006 MsG0780035957.01.T01:CDS 55.0%
! AGGTGGTTCGGACACGTGTT+TGG - Chr7:531607-531626 None:intergenic 55.0%
ACCCCAACGACTTCCAGCAG+TGG - Chr7:533118-533137 None:intergenic 60.0%
GCCACTGCTGGAAGTCGTTG+GGG + Chr7:533114-533133 MsG0780035957.01.T01:CDS 60.0%
GGCCACTGCTGGAAGTCGTT+GGG + Chr7:533113-533132 MsG0780035957.01.T01:CDS 60.0%
TCGTCAGCAGGTCTTCGCCT+TGG - Chr7:534116-534135 None:intergenic 60.0%
TGGCCACTGCTGGAAGTCGT+TGG + Chr7:533112-533131 MsG0780035957.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 531205 534364 531205 ID=MsG0780035957.01;Name=MsG0780035957.01
Chr7 mRNA 531205 534364 531205 ID=MsG0780035957.01.T01;Parent=MsG0780035957.01;Name=MsG0780035957.01.T01;_AED=0.45;_eAED=0.58;_QI=0|0.75|0.4|1|0.75|0.6|5|0|286
Chr7 exon 531205 531257 531205 ID=MsG0780035957.01.T01:exon:38261;Parent=MsG0780035957.01.T01
Chr7 exon 531944 532133 531944 ID=MsG0780035957.01.T01:exon:38262;Parent=MsG0780035957.01.T01
Chr7 exon 532229 532319 532229 ID=MsG0780035957.01.T01:exon:38263;Parent=MsG0780035957.01.T01
Chr7 exon 533016 533173 533016 ID=MsG0780035957.01.T01:exon:38264;Parent=MsG0780035957.01.T01
Chr7 exon 533996 534364 533996 ID=MsG0780035957.01.T01:exon:38265;Parent=MsG0780035957.01.T01
Chr7 CDS 531205 531257 531205 ID=MsG0780035957.01.T01:cds;Parent=MsG0780035957.01.T01
Chr7 CDS 531944 532133 531944 ID=MsG0780035957.01.T01:cds;Parent=MsG0780035957.01.T01
Chr7 CDS 532229 532319 532229 ID=MsG0780035957.01.T01:cds;Parent=MsG0780035957.01.T01
Chr7 CDS 533016 533173 533016 ID=MsG0780035957.01.T01:cds;Parent=MsG0780035957.01.T01
Chr7 CDS 533996 534364 533996 ID=MsG0780035957.01.T01:cds;Parent=MsG0780035957.01.T01
Gene Sequence

>MsG0780035957.01.T01

ATGTTACATAAGTACGGGTACGGTACCCGGTACAATACGGGTACCGACTACCGTGGCTGTACTGTTAGGTATCATTACAATGTAGCGGATGGACGATTAGCGCAGCATGTAGAGCGAGGGATTGCAGACGGCCTTCTTATTAGTTGTGTGGCTTCTTGTTCCAATCTCTGGGCACTTATTATGGATGCTGGAACTGGATTTACAAATCAAGTTTACAAGTTGTCACCTTTTTTCTTACACAAGGAATGGATCATGGAGCAATGGGAGAAGAACTATTACATTACTTCTATAGCTGGGGTTACTAATGGGAGCTCTCTTGTGGTGATGTCAAAAGGCACACAGTATACACAACAATCATACAAAGTAAGCGAGTCTTTCCCCTTCAAATGGATAAACAAGAAGTGGAGAGAAGGTTTTCACGTGACTTCAATGGCCACTGCTGGAAGTCGTTGGGGTGTTGTTATGTCACGGAATGCTGGATTCAGTGATCAGGTTGTTGAACTTGATTTCCTCTACCCTAGTGAGGGAATCCATAGACGATGGGATAATGGTTACAGGATCACAGCAACTGCAGCTACATGGGATCAATCTGCTCTTATATTAAGCAAACCAAGGCGAAGACCTGCTGACGAAACTCAGGAAACTCTTCGGACATCTCAATTTCCAAGCACACATGTTAAGGTTAGGGTTGATAAATCAATACTTGATTTTGTTAGCTACCTTCAAAAAGTGATTTTTCTCATTGATTCTGTTTATGTTTACAGGAAAAATGGTCAAAAAACCTTTACCTTGCTTGCTTGTGCTATGGGCGTACAGTATGTTGATTCCCTTTCAGTGTTGTCAAATAGCGGCTTGTTGTAG

Protein sequence

>MsG0780035957.01.T01

MLHKYGYGTRYNTGTDYRGCTVRYHYNVADGRLAQHVERGIADGLLISCVASCSNLWALIMDAGTGFTNQVYKLSPFFLHKEWIMEQWEKNYYITSIAGVTNGSSLVVMSKGTQYTQQSYKVSESFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWDNGYRITATAATWDQSALILSKPRRRPADETQETLRTSQFPSTHVKVRVDKSILDFVSYLQKVIFLIDSVYVYRKNGQKTFTLLACAMGVQYVDSLSVLSNSGLL*